******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/zf30C.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:14790880-14791000 1.0000 120 chr3R:11992678-11992798 1.0000 120 chr3R:8140503-8140623 1.0000 120 chr3L:8824573-8824693 1.0000 120 chrX:6996269-6996389 1.0000 120 chr3L:9136762-9136882 1.0000 120 chr2R:21529423-21529543 1.0000 120 chrX:464099-464219 1.0000 120 chr2R:17703620-17703740 1.0000 120 chr3R:19324937-19325057 1.0000 120 chrX:512645-512765 1.0000 120 chr3R:19315761-19315881 1.0000 120 chr4:850503-850623 1.0000 120 chrX:15733687-15733807 1.0000 120 chrX:17379631-17379751 1.0000 120 chrX:766298-766418 1.0000 120 chr3R:25176690-25176810 1.0000 120 chr3R:8867487-8867607 1.0000 120 chr3L:17417560-17417680 1.0000 120 chr2L:11226182-11226302 1.0000 120 chrX:2304811-2304931 1.0000 120 chrX:5075997-5076117 1.0000 120 chr2L:285014-285134 1.0000 120 chrX:6719439-6719559 1.0000 120 chr2R:19811371-19811491 1.0000 120 chr2R:13188814-13188934 1.0000 120 chr3L:10518113-10518233 1.0000 120 chr3L:22405846-22405966 1.0000 120 chr3L:1418939-1419059 1.0000 120 chr2R:10819367-10819487 1.0000 120 chr2R:9944561-9944681 1.0000 120 chr2R:23209350-23209470 1.0000 120 chr3R:18050772-18050892 1.0000 120 chrX:19788938-19789058 1.0000 120 chr3R:10553643-10553763 1.0000 120 chr2L:8957312-8957432 1.0000 120 chr3R:8689121-8689241 1.0000 120 chr3R:8288929-8289049 1.0000 120 chrX:12256789-12256909 1.0000 120 chrX:12647288-12647408 1.0000 120 chr3L:14639892-14640012 1.0000 120 chrX:2298526-2298646 1.0000 120 chr2R:11101334-11101454 1.0000 120 chr3R:31683172-31683292 1.0000 120 chr2R:17803428-17803548 1.0000 120 chrX:3837816-3837936 1.0000 120 chr3R:21636490-21636610 1.0000 120 chrX:454230-454350 1.0000 120 chr3L:15517698-15517818 1.0000 120 chrX:5993943-5994063 1.0000 120 chrX:10110954-10111074 1.0000 120 chr3L:3863595-3863715 1.0000 120 chr3R:27280820-27280940 1.0000 120 chr2L:7263013-7263133 1.0000 120 chr3L:18316527-18316647 1.0000 120 chr2L:5050281-5050401 1.0000 120 chr2L:11239921-11240041 1.0000 120 chr2L:2167419-2167539 1.0000 120 chr3L:6993424-6993544 1.0000 120 chrX:10809722-10809842 1.0000 120 chr2L:1972340-1972460 1.0000 120 chr3R:5682468-5682588 1.0000 120 chr2R:24805899-24806019 1.0000 120 chr2R:25099565-25099685 1.0000 120 chr4:400885-401005 1.0000 120 chrX:19782733-19782853 1.0000 120 chr2L:19229273-19229393 1.0000 120 chr2L:4110339-4110459 1.0000 120 chr3L:126801-126921 1.0000 120 chr2R:11512842-11512962 1.0000 120 chrX:12671613-12671733 1.0000 120 chr2R:12910299-12910419 1.0000 120 chr2R:10682694-10682814 1.0000 120 chr2L:11234782-11234902 1.0000 120 chrX:4584286-4584406 1.0000 120 chr2L:3532659-3532779 1.0000 120 chrX:17836544-17836664 1.0000 120 chr2L:709546-709666 1.0000 120 chr3L:11242499-11242619 1.0000 120 chr3L:3142985-3143105 1.0000 120 chr2L:2863396-2863516 1.0000 120 chr3L:816603-816723 1.0000 120 chr2L:8296566-8296686 1.0000 120 chr2L:1474365-1474485 1.0000 120 chrX:8636802-8636922 1.0000 120 chr2R:18437842-18437962 1.0000 120 chr3L:722021-722141 1.0000 120 chr2R:11547227-11547347 1.0000 120 chr3L:22949734-22949854 1.0000 120 chr3R:22287653-22287773 1.0000 120 chr2L:27045-27165 1.0000 120 chrX:8775308-8775428 1.0000 120 chr3R:19340475-19340595 1.0000 120 chr2L:14448082-14448202 1.0000 120 chr3L:9423924-9424044 1.0000 120 chr3R:17681385-17681505 1.0000 120 chr2R:15117736-15117856 1.0000 120 chr3R:4974075-4974195 1.0000 120 chrX:7258507-7258627 1.0000 120 chr2L:918489-918609 1.0000 120 chr2R:12278081-12278201 1.0000 120 chr3R:20753407-20753527 1.0000 120 chrX:20753263-20753383 1.0000 120 chrX:17179313-17179433 1.0000 120 chr3L:18629438-18629558 1.0000 120 chr3R:26093896-26094016 1.0000 120 chrX:8414552-8414672 1.0000 120 chrX:19716648-19716768 1.0000 120 chrX:1233387-1233507 1.0000 120 chrX:11800111-11800231 1.0000 120 chrX:13821402-13821522 1.0000 120 chrX:16808737-16808857 1.0000 120 chr2L:3543285-3543405 1.0000 120 chr3L:5817347-5817467 1.0000 120 chr2R:15927591-15927711 1.0000 120 chr3L:20306391-20306511 1.0000 120 chr3R:30903562-30903682 1.0000 120 chr3L:10526038-10526158 1.0000 120 chr3R:30021072-30021192 1.0000 120 chr2R:14933885-14934005 1.0000 120 chr3R:19301544-19301664 1.0000 120 chr2R:16395272-16395392 1.0000 120 chr2L:1652074-1652194 1.0000 120 chr3L:14576190-14576310 1.0000 120 chrX:17797164-17797284 1.0000 120 chr2R:9072729-9072849 1.0000 120 chr4:396059-396179 1.0000 120 chr2L:19103967-19104087 1.0000 120 chr3L:10867360-10867480 1.0000 120 chrX:3861946-3862066 1.0000 120 chr2L:8818346-8818466 1.0000 120 chr3L:20644893-20645013 1.0000 120 chr3R:14445216-14445336 1.0000 120 chrX:14267042-14267162 1.0000 120 chr2R:23595204-23595324 1.0000 120 chr2L:285214-285334 1.0000 120 chrX:17712319-17712439 1.0000 120 chr2L:19816089-19816209 1.0000 120 chr2L:11794907-11795027 1.0000 120 chr2L:4104062-4104182 1.0000 120 chr3R:8163692-8163812 1.0000 120 chrX:17912641-17912761 1.0000 120 chrX:17733076-17733196 1.0000 120 chrX:8399234-8399354 1.0000 120 chr2L:6990245-6990365 1.0000 120 chrX:10815129-10815249 1.0000 120 chr2L:11223013-11223133 1.0000 120 chr3L:591494-591614 1.0000 120 chr2R:12906041-12906161 1.0000 120 chr3R:5023852-5023972 1.0000 120 chr2R:6597664-6597784 1.0000 120 chr2R:23642094-23642214 1.0000 120 chr3R:4964175-4964295 1.0000 120 chr2R:24842756-24842876 1.0000 120 chr3R:15313843-15313963 1.0000 120 chr2R:24034595-24034715 1.0000 120 chrX:20520593-20520713 1.0000 120 chr2R:18442477-18442597 1.0000 120 chr3R:18927792-18927912 1.0000 120 chr3R:25246992-25247112 1.0000 120 chrX:2394388-2394508 1.0000 120 chr3L:14151554-14151674 1.0000 120 chr3R:6663053-6663173 1.0000 120 chr3R:29218156-29218276 1.0000 120 chr3L:19147389-19147509 1.0000 120 chr2L:20995151-20995271 1.0000 120 chr2R:17581898-17582018 1.0000 120 chrX:3348837-3348957 1.0000 120 chrX:18565222-18565342 1.0000 120 chr3R:14457135-14457255 1.0000 120 chrX:9285824-9285944 1.0000 120 chr2L:4043022-4043142 1.0000 120 chr3R:28591227-28591347 1.0000 120 chr2L:10607357-10607477 1.0000 120 chr3R:15580050-15580170 1.0000 120 chr2R:6515154-6515274 1.0000 120 chr3L:1165990-1166110 1.0000 120 chr3R:29269406-29269526 1.0000 120 chrX:4561993-4562113 1.0000 120 chr3R:31939298-31939418 1.0000 120 chr2R:10976881-10977001 1.0000 120 chr2L:11346180-11346300 1.0000 120 chr2R:22699361-22699481 1.0000 120 chrX:16800107-16800227 1.0000 120 chr2R:6750493-6750613 1.0000 120 chr3R:16836139-16836259 1.0000 120 chrX:842074-842194 1.0000 120 chrX:17258406-17258526 1.0000 120 chr3L:810269-810389 1.0000 120 chr3R:16259793-16259913 1.0000 120 chr2R:21056602-21056722 1.0000 120 chr2R:15471921-15472041 1.0000 120 chr3L:11427114-11427234 1.0000 120 chr2L:15370216-15370336 1.0000 120 chrX:21497082-21497202 1.0000 120 chrX:9248142-9248262 1.0000 120 chr2L:3849734-3849854 1.0000 120 chr2L:14586862-14586982 1.0000 120 chr3R:30310097-30310217 1.0000 120 chrX:17193225-17193345 1.0000 120 chr3L:12453703-12453823 1.0000 120 chr2R:5362480-5362600 1.0000 120 chr3R:30794613-30794733 1.0000 120 chrX:21374662-21374782 1.0000 120 chrX:3031851-3031971 1.0000 120 chr3L:15798503-15798623 1.0000 120 chr2R:15902659-15902779 1.0000 120 chrX:2951838-2951958 1.0000 120 chrX:2307811-2307931 1.0000 120 chr2R:23573818-23573938 1.0000 120 chr2R:20666039-20666159 1.0000 120 chr3R:4979324-4979444 1.0000 120 chrX:17342593-17342713 1.0000 120 chr2L:3740621-3740741 1.0000 120 chr3R:7142224-7142344 1.0000 120 chr4:1093481-1093601 1.0000 120 chr2R:11559276-11559396 1.0000 120 chr3R:8930620-8930740 1.0000 120 chr2L:2901567-2901687 1.0000 120 chr3L:15665898-15666018 1.0000 120 chr3R:30770223-30770343 1.0000 120 chr3L:19556089-19556209 1.0000 120 chr2R:15737193-15737313 1.0000 120 chrX:16205280-16205400 1.0000 120 chr2L:15315083-15315203 1.0000 120 chr3R:21295191-21295311 1.0000 120 chrX:7122110-7122230 1.0000 120 chr2R:14432633-14432753 1.0000 120 chr2R:16080679-16080799 1.0000 120 chr3R:23212463-23212583 1.0000 120 chr3R:24031008-24031128 1.0000 120 chr3R:8799573-8799693 1.0000 120 chr3L:10525246-10525366 1.0000 120 chr2L:14483550-14483670 1.0000 120 chrX:7909631-7909751 1.0000 120 chr2R:18675253-18675373 1.0000 120 chr3R:7135044-7135164 1.0000 120 chr3L:15640104-15640224 1.0000 120 chr3R:18228861-18228981 1.0000 120 chr3R:14879095-14879215 1.0000 120 chr3R:21094683-21094803 1.0000 120 chr3R:10226332-10226452 1.0000 120 chr2R:23648125-23648245 1.0000 120 chr2L:15319266-15319386 1.0000 120 chr3L:7953915-7954035 1.0000 120 chr2R:15667247-15667367 1.0000 120 chrX:4669483-4669603 1.0000 120 chr3R:14467430-14467550 1.0000 120 chr3L:18367824-18367944 1.0000 120 chr3L:18329165-18329285 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_zf30C/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/zf30C.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.193 G 0.194 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.193 G 0.194 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CASTGHRM MEME-1 width = 8 sites = 149 llr = 1060 E-value = 1.0e-059 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:1:365 pos.-specific C a:6::3:2 probability G ::4:a142 matrix T :::9:3:1 bits 2.4 * * 2.1 * * 1.9 * * 1.7 ** * Relative 1.4 *** * Entropy 1.2 ***** (10.3 bits) 0.9 ***** * 0.7 ***** * 0.5 ***** * 0.2 ***** ** 0.0 -------- Multilevel CACTGAAA consensus G TGC sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3849734-3849854 74 1.22e-05 TCACAGATAA CACTGCAA GAAAATAAGC chrX:9285824-9285944 42 1.22e-05 GACCCGCACA CACTGCAA GAAAAAAAGG chrX:17712319-17712439 40 1.22e-05 cacacaAGTA CACTGCAA ATACCCAGGC chr2L:19103967-19104087 34 1.22e-05 TACACAACTA CACTGCAA CAAAAGAGCA chr3R:20753407-20753527 56 1.22e-05 CAACAAAATA CACTGCAA AAAATTATTG chrX:17836544-17836664 49 1.22e-05 TTAATGGCTG CACTGCAA CAAAATGGGC chrX:12647288-12647408 42 1.22e-05 CACCCACCAC CACTGCAA CGACGCCTCC chr2L:15319266-15319386 11 3.92e-05 CATTTTCCTG CACTGAAA TAATTTACAT chr3R:30770223-30770343 15 3.92e-05 AAAGGTGCGA CACTGAAA GAAACCGTCA chr3R:30794613-30794733 21 3.92e-05 GACATTCCTG CACTGAAA GAAATACCCC chrX:21497082-21497202 38 3.92e-05 AACGCACATG CACTGAAA AAAACCGCAC chr2L:11346180-11346300 92 3.92e-05 TTGCGCAGTG CACTGCGA AGGAGCACTT chr3R:28591227-28591347 65 3.92e-05 ACTGGAGCTG CACTGAAA GAAATATAGT chr2L:4043022-4043142 71 3.92e-05 TCGATTAGTA CACTGAAA ATAAAATGAT chrX:2394388-2394508 22 3.92e-05 TTGTCCAGTG CACTGAAA GAAATATTCT chr2R:6597664-6597784 26 3.92e-05 TCCCTTTGCG CACTGAAA GAAATCAATC chrX:8399234-8399354 52 3.92e-05 AAAAGCCGCA CACTGCGA AAATTTTCCT chr3R:30903562-30903682 49 3.92e-05 AGGGAGGACG CACTGAAA AAAAAAATAT chr3L:20306391-20306511 72 3.92e-05 TGTATGTGTG CACTGAAA GAAAAATGTT chrX:16808737-16808857 38 3.92e-05 CCTCAGTTGA CACTGAAA AAAAATATAG chr2R:12278081-12278201 56 3.92e-05 ACCACACATA CACTGAAA ACAATTTCCG chrX:8775308-8775428 65 3.92e-05 GCTGTGGCTG CACTGCGA AAAATTCTAG chr3L:22949734-22949854 58 3.92e-05 AGCGATACTA CACTGAAA GACATTTATG chr2L:1972340-1972460 8 3.92e-05 GCGAGCA CACTGAAA GAAATAAAGG chr3R:27280820-27280940 15 3.92e-05 CACACAGATA CACTGCGA CAAAGTGGCA chr3L:14639892-14640012 24 3.92e-05 TGGAACACAA CACTGAAA AAAACGGTAG chr3R:10553643-10553763 21 3.92e-05 AGAAAGATTA CACTGCGA AAAATGACAT chr2R:23209350-23209470 31 3.92e-05 CGTAGCACTG CACTGCGA GAAATTGTGT chr3L:1418939-1419059 26 3.92e-05 TGGGGCAGTG CACTGCGA AAAACAAAGG chr3R:8140503-8140623 45 3.92e-05 GCCACAGGAC CACTGAAA AAAAACGGAA chr3L:18367824-18367944 72 7.14e-05 ATTTTATCGG CACTGAGA AAAAACATGT chrX:7122110-7122230 15 7.14e-05 GTAAGCGCTG CACTGAGA GAAAAAGTAT chr2L:3740621-3740741 73 7.14e-05 GATTTTTTTC CAGTGCAA TCTTAGCCTA chr3R:30310097-30310217 1 7.14e-05 . CACTGAGA AAATTACCAC chrX:17912641-17912761 60 7.14e-05 GCACTTCTCG CACTGCAC TGCTTGCATC chr2R:10682694-10682814 41 7.14e-05 ATTCCTCTTA CACTGCAC GAAAATTCTG chrX:2298526-2298646 32 7.14e-05 AATCGCTTAG CACTGAGA AAAATATAGG chr2R:9944561-9944681 29 7.14e-05 CACAGCCGCA CACTGAGA GATATATTTT chr3R:8867487-8867607 57 7.14e-05 TCGTCGAAAA CACTGAGA AAATTGGGAG chr3R:10226332-10226452 103 1.43e-04 GGGGGCGTGC CACTGCGC AGTCTCCCCA chr3L:10525246-10525366 22 1.43e-04 CGTTCATTTG CAGTGAAA TAAAATAATG chr3R:24031008-24031128 57 1.43e-04 GTAGTATACA CAGTGAAA AACGAGGGGT chr3R:21295191-21295311 44 1.43e-04 CGCCAGGCTA CACTGAAC GCATTCGGGG chr3R:15313843-15313963 51 1.43e-04 CTTATCTATA CACTGTAA ATAATCTGTT chr3L:15517698-15517818 40 1.43e-04 TTAAGTCATG CACTGAAC GGCTTTGGTT chr3R:18228861-18228981 17 2.00e-04 GCCCAGCTTA CACTGAGC GAAGGCATAG chr2R:14432633-14432753 35 2.00e-04 CCCAATATTG CAGTGAGA GAAAAAGCAA chr3L:15798503-15798623 30 2.00e-04 CAAATATATA CACTGAGC CATCACTTCT chr3L:11427114-11427234 106 2.00e-04 TGATCTTTCT CAGTGCAC CACCAAG chr2R:15471921-15472041 54 2.00e-04 AACCGAAGTG CACTGAAG AAAAATAGAG chr3L:810269-810389 101 2.00e-04 CTTGTTGACT CAGTGCAC AAACTCCCGG chr3R:16836139-16836259 15 2.00e-04 CCTCGTTGTG CACTGTGA AAAAATTCCA chr3L:9423924-9424044 23 2.00e-04 CGACCCAGTA CACTGAGC AAAAACGTGA chr2R:11547227-11547347 3 2.00e-04 CA CAGTGAGA AAAATCTACT chr3L:722021-722141 24 2.00e-04 AACCCAGGCA CACTGAGC AAAATCATGA chr3R:5682468-5682588 86 2.00e-04 TTTTTTCTTG CAGTGCAC TCATTTCAAC chrX:454230-454350 54 2.00e-04 AAATTTCTTA CAGTGCAC TGCAGTCCTT chr3R:31683172-31683292 1 2.00e-04 . CACTGAGC AAAATCGGTG chr3R:8288929-8289049 24 2.00e-04 TTCGTTGCTG CACTGTGA ACGACGAGAG chr3R:19315761-19315881 44 2.00e-04 GGAAATCTTA CACTGAGC GAAGAGCAGC chr3R:8799573-8799693 43 2.65e-04 CTGTTTCTTG CAGTGTAA TGACGTCAAT chr2R:15737193-15737313 27 2.65e-04 GTGAAAAGTG CACTGAGG AAAATGTGGG chrX:2951838-2951958 94 2.65e-04 CCTTTTTCCA CAGTGCAG TAGCTCCGAC chr2L:14586862-14586982 96 2.65e-04 AGATTTTCCA CAGTGCAG CCACGATTTT chr2L:15370216-15370336 47 2.65e-04 TTTTTTATGC CAGTGCAG ACAGTCTGTC chr3R:14445216-14445336 89 2.65e-04 TGCGCATGCG CAGTGTAA TAATGTGCGC chr3L:20644893-20645013 72 2.65e-04 AAGATTTTTT CAGTGTAA GCTTCAGCCG chr2L:1652074-1652194 38 2.65e-04 GGCGCAATAC CAGTGAAC TGAACCCCTT chr3R:19301544-19301664 66 2.65e-04 TCTTTTCTCG CAGTGCAG AGTTGCTTAA chrX:11800111-11800231 56 2.65e-04 gGGCGGCCCA CACTGAGG AAAACAATTT chrX:19716648-19716768 108 2.65e-04 AATCCCAACG CAGTGAAC TTATG chrX:12671613-12671733 10 2.65e-04 TTTTTCGTT CAGTGCAG CTTGTTGCTT chr2L:4110339-4110459 63 2.65e-04 ATATTTTTTC CAGTGTAA AATTGTGCTC chrX:10809722-10809842 17 2.65e-04 AACGTAGGTA CACTGAGG ACAACAACGC chr3R:8689121-8689241 79 2.65e-04 TTTGTATATA CACTGAGG GAAAATTTAT chr2R:19811371-19811491 3 2.65e-04 TG CACTGAGG AAAATAGCGT chrX:464099-464219 5 2.65e-04 AGTA CACTGAGG AAACAACACG chrX:3348837-3348957 77 3.23e-04 TTATTTCGCT CAGTGTGA CCACACACAC chr3R:30021072-30021192 55 3.23e-04 AATAGCAGTA CACTGTGC GGAGTTTCGA chr2L:11239921-11240041 33 3.23e-04 GTGTAAGCTC CAGTGTGA GCAAGAATAT chr2R:23648125-23648245 24 3.51e-04 CACGCACACA CACTGTGG GAAAAGGGGG chr3R:14879095-14879215 76 3.51e-04 ATATTTCTTG CAGTGTAC ACGCTTGGGC chr2R:15902659-15902779 62 3.51e-04 GAATTTGGCT CAGTGTAC GCCCGTTTAC chrX:21374662-21374782 69 3.51e-04 CGAAATTTTG CAGTGTAC ATGTGAGTGG chr2R:21056602-21056722 61 3.51e-04 TCGTTTCTCT CAGTGTAC CGTTTGTTTG chr2R:12906041-12906161 94 3.51e-04 CATTTTCCGT CAGTGTAC GCTCTTAAGC chr2L:6990245-6990365 62 3.51e-04 ACTTTTCTGC CAGTGTAC GCATGGATGG chr2L:8818346-8818466 90 3.51e-04 GGATTTTGCA CAGTGTAC TTTCTGCTAA chrX:5993943-5994063 45 3.51e-04 AAACTATCCT CAGTGTAC TATGGTTTCA chr3R:21636490-21636610 88 3.51e-04 AGACTTTTAG CAGTGTAC TAGCTCTTAG chr3L:22405846-22405966 80 3.51e-04 TGATTTCTGT CAGTGTAC AATCAGGCAG chr2R:17703620-17703740 100 3.51e-04 CTTTTTCGGC CAGTGTAC GAACCTAACT chr2L:14483550-14483670 62 3.83e-04 CCTTTTCTCG CAgtgtgc gtgtgtgtgt chr3R:23212463-23212583 84 3.83e-04 CGACTTCTTA CAGTGTAG CCAGTTACAG chr2L:2901567-2901687 20 3.83e-04 CACATGACTG CACTGGAA AAAATATTTG chr2R:23573818-23573938 77 3.83e-04 CAATAACGCG CAGTGTAG GATGTGTAGG chr3L:1165990-1166110 50 3.83e-04 TTCGTTCGCT CAGTGTAG CTGCATCTGT chrX:18565222-18565342 54 3.83e-04 CCGCATTGTT CAGTGTAG TGAGTGCATT chr2R:24034595-24034715 48 3.83e-04 GTGTGTGCTG CAGTGTGC GTTTCCTACA chrX:17733076-17733196 69 3.83e-04 aAATTTCTTG CAGTGTAG CAAGGAAAAG chrX:1233387-1233507 82 3.83e-04 TAATTTATTG CAGTGTAG GCACATATTA chr2L:3532659-3532779 14 3.83e-04 GAGATAGCTG CACTGGAA AAAAATACGC chr2L:8957312-8957432 57 3.83e-04 CATTTGTCTT CAGTGTAG TGCGAAAATC chr2L:11226182-11226302 96 3.83e-04 TGATTTCTTT CAGTGTGC CCTCCTTCCT chr3L:8824573-8824693 49 3.83e-04 ACTTTTCTCG CAGTGTAG GGCCCCTGCA chr3R:29269406-29269526 86 3.99e-04 TCTTTTCGCT CAGTGTGG GAAACGGAAG chr2R:6515154-6515274 18 3.99e-04 TGGAACGGTA CACTGGGA AAAGTGGTCC chr2R:23642094-23642214 53 3.99e-04 GTTCTAGGTG CACTGGGA GAAATGTTGT chrX:5075997-5076117 62 3.99e-04 GCAAATTACA CACTGGGA GAAAAGGTTT chrX:766298-766418 13 3.99e-04 ATAGTTTCGA CACTGGGA GAAAGTGCAG chrX:512645-512765 30 3.99e-04 TGGCTCAATA CACTGGGA GCAAAAAAGC chrX:6996269-6996389 112 3.99e-04 ATATTGTTTC CAGTGTGG C chrX:20520593-20520713 43 4.40e-04 GCATTGTTTA CACTGGGC GAAAATGCGT chr2L:285214-285334 49 4.40e-04 AACTTTTATA CACTGGAG ACCTTGACAA chr3R:4979324-4979444 81 4.65e-04 TAGTTTCTCT CAGTGGAG GTGTAAGGCG chrX:17193225-17193345 85 4.65e-04 TATATCGAAG CAGTGGAG GCGATTCCAC chrX:10815129-10815249 74 4.65e-04 GTTTTTTTCT CAGTGGAG ATGATAGTTT chr2R:5362480-5362600 34 5.22e-04 GACCATCATA CACAGCAA AAAACGATGT chrX:9248142-9248262 60 5.73e-04 CGCACAGGTA CACAGCGA GAAAAAACTT chr2R:10976881-10977001 107 5.73e-04 AGATTTCTCG CAGTGCAT TGCTCT chr2L:4104062-4104182 23 5.73e-04 GCATTTCTTT CAGTGCAT GCCTAATGCC chr3L:10867360-10867480 35 5.73e-04 CAGTTTTTTC CAGTGCAT GTCACATAAT chr3R:26093896-26094016 75 5.73e-04 GAATCTTTTG CAGTGCAT TGTCCATACT chr3L:816603-816723 21 5.73e-04 AAAAAAACTA CACAGAAA AAAAAAGAAT chr3L:11242499-11242619 57 5.73e-04 gtgtatcttg cagtgcat cttgcagtgt chr3L:6993424-6993544 33 5.73e-04 GGTTGAGCTA CACAGCGA GAAATTGTGG chr3L:9136762-9136882 54 5.73e-04 TTATTTCTTT CAGTGCAT TTTCCCCAGT chrX:17258406-17258526 63 6.52e-04 GTTGAACGTG CACAGAGA GAAAATGCTA chrX:842074-842194 9 6.52e-04 ATGTAATG CACAGAGA GAAATGGGAG chr3R:4964175-4964295 57 6.52e-04 GTACCTGGCA CACAGAGA AAAAATATGG chr3R:4974075-4974195 86 6.52e-04 CCGCTAGATA CACAGAGA AATAAAATGT chr3R:11992678-11992798 30 6.52e-04 AACGCTACTA CACAGCAC GAAAAACTTG chr2R:15667247-15667367 75 7.48e-04 CAAAAATTTC CACTGTGT ATCTGCTTTG chr3R:15580050-15580170 103 7.48e-04 TTATTTATTC CAGAGAAA TTGAGCTAAT chr2L:15315083-15315203 94 8.24e-04 TTTTTGCCGG CAGTGTAT GTGAGAGGCT chrX:8414552-8414672 59 8.24e-04 AAATCTTGGA CAGAGAGA GAAATAAGTG chr3R:22287653-22287773 90 8.24e-04 TTTTTCCCCC CAGTGTAT GTATGCCCCT chr3R:18050772-18050892 65 8.24e-04 CGCTGCCGCT CAGTGTAT CCGATACCAA chrX:15733687-15733807 37 8.24e-04 TGGCTTACTG CAGTGTAT ACTGCGGCAA chr3L:19147389-19147509 99 9.01e-04 GGTTTTTTCT CAGTGTGT GCTTGATAAA chr3R:25246992-25247112 68 9.01e-04 TCAACAAATG CAGAGCAG ACTCCAGGCA chr3L:3863595-3863715 74 9.01e-04 TCTTCTGTTG CACAGTAC AACATAATTA chrX:2307811-2307931 21 9.58e-04 GGGCGCGGGG CACAGTGC TCGACTACAC chr3L:14151554-14151674 68 9.58e-04 TAGAAAAATG CAGAGAAG TCGTTTCTTC chrX:19788938-19789058 25 9.58e-04 GCGAAATGAG CAGAGAAG AAAACATCGC chr2R:24842756-24842876 13 1.04e-03 TGGACTAGTA CACAGGAA AAAAGATTGA chr3R:14467430-14467550 30 1.07e-03 CACACACACA CACAGGGA TTTCAAATCG chr3L:5817347-5817467 41 1.07e-03 GCATCGAGTG CACAGGGA GAAAATATTC chrX:8636802-8636922 92 1.11e-03 TCTTTTAGTG CACAGGAG CTGCAGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3849734-3849854 1.2e-05 73_[+1]_39 chrX:9285824-9285944 1.2e-05 41_[+1]_71 chrX:17712319-17712439 1.2e-05 39_[+1]_73 chr2L:19103967-19104087 1.2e-05 33_[+1]_79 chr3R:20753407-20753527 1.2e-05 55_[+1]_57 chrX:17836544-17836664 1.2e-05 48_[+1]_64 chrX:12647288-12647408 1.2e-05 41_[+1]_71 chr2L:15319266-15319386 3.9e-05 10_[+1]_102 chr3R:30770223-30770343 3.9e-05 14_[+1]_98 chr3R:30794613-30794733 3.9e-05 20_[+1]_92 chrX:21497082-21497202 3.9e-05 37_[+1]_75 chr2L:11346180-11346300 3.9e-05 91_[+1]_21 chr3R:28591227-28591347 3.9e-05 64_[+1]_48 chr2L:4043022-4043142 3.9e-05 70_[+1]_42 chrX:2394388-2394508 3.9e-05 21_[+1]_91 chr2R:6597664-6597784 3.9e-05 25_[+1]_87 chrX:8399234-8399354 3.9e-05 51_[+1]_61 chr3R:30903562-30903682 3.9e-05 48_[+1]_64 chr3L:20306391-20306511 3.9e-05 71_[+1]_41 chrX:16808737-16808857 3.9e-05 37_[+1]_75 chr2R:12278081-12278201 3.9e-05 55_[+1]_57 chrX:8775308-8775428 3.9e-05 64_[+1]_48 chr3L:22949734-22949854 3.9e-05 57_[+1]_55 chr2L:1972340-1972460 3.9e-05 7_[+1]_105 chr3R:27280820-27280940 3.9e-05 14_[+1]_98 chr3L:14639892-14640012 3.9e-05 23_[+1]_89 chr3R:10553643-10553763 3.9e-05 20_[+1]_92 chr2R:23209350-23209470 3.9e-05 30_[+1]_82 chr3L:1418939-1419059 3.9e-05 25_[+1]_87 chr3R:8140503-8140623 3.9e-05 44_[+1]_68 chr3L:18367824-18367944 7.1e-05 71_[+1]_41 chrX:7122110-7122230 7.1e-05 14_[+1]_98 chr2L:3740621-3740741 7.1e-05 72_[+1]_40 chr3R:30310097-30310217 7.1e-05 [+1]_112 chrX:17912641-17912761 7.1e-05 59_[+1]_53 chr2R:10682694-10682814 7.1e-05 40_[+1]_72 chrX:2298526-2298646 7.1e-05 31_[+1]_81 chr2R:9944561-9944681 7.1e-05 28_[+1]_84 chr3R:8867487-8867607 7.1e-05 56_[+1]_56 chr3R:10226332-10226452 0.00014 102_[+1]_10 chr3L:10525246-10525366 0.00014 21_[+1]_91 chr3R:24031008-24031128 0.00014 56_[+1]_56 chr3R:21295191-21295311 0.00014 43_[+1]_69 chr3R:15313843-15313963 0.00014 50_[+1]_62 chr3L:15517698-15517818 0.00014 39_[+1]_73 chr3R:18228861-18228981 0.0002 16_[+1]_96 chr2R:14432633-14432753 0.0002 34_[+1]_78 chr3L:15798503-15798623 0.0002 29_[+1]_83 chr3L:11427114-11427234 0.0002 105_[+1]_7 chr2R:15471921-15472041 0.0002 53_[+1]_59 chr3L:810269-810389 0.0002 100_[+1]_12 chr3R:16836139-16836259 0.0002 14_[+1]_98 chr3L:9423924-9424044 0.0002 22_[+1]_90 chr2R:11547227-11547347 0.0002 2_[+1]_110 chr3L:722021-722141 0.0002 23_[+1]_89 chr3R:5682468-5682588 0.0002 85_[+1]_27 chrX:454230-454350 0.0002 53_[+1]_59 chr3R:31683172-31683292 0.0002 [+1]_112 chr3R:8288929-8289049 0.0002 23_[+1]_89 chr3R:19315761-19315881 0.0002 43_[+1]_69 chr3R:8799573-8799693 0.00026 42_[+1]_70 chr2R:15737193-15737313 0.00026 26_[+1]_86 chrX:2951838-2951958 0.00026 93_[+1]_19 chr2L:14586862-14586982 0.00026 95_[+1]_17 chr2L:15370216-15370336 0.00026 46_[+1]_66 chr3R:14445216-14445336 0.00026 88_[+1]_24 chr3L:20644893-20645013 0.00026 71_[+1]_41 chr2L:1652074-1652194 0.00026 37_[+1]_75 chr3R:19301544-19301664 0.00026 65_[+1]_47 chrX:11800111-11800231 0.00026 55_[+1]_57 chrX:19716648-19716768 0.00026 107_[+1]_5 chrX:12671613-12671733 0.00026 9_[+1]_103 chr2L:4110339-4110459 0.00026 62_[+1]_50 chrX:10809722-10809842 0.00026 16_[+1]_96 chr3R:8689121-8689241 0.00026 78_[+1]_34 chr2R:19811371-19811491 0.00026 2_[+1]_110 chrX:464099-464219 0.00026 4_[+1]_108 chrX:3348837-3348957 0.00032 76_[+1]_36 chr3R:30021072-30021192 0.00032 54_[+1]_58 chr2L:11239921-11240041 0.00032 32_[+1]_80 chr2R:23648125-23648245 0.00035 23_[+1]_89 chr3R:14879095-14879215 0.00035 75_[+1]_37 chr2R:15902659-15902779 0.00035 61_[+1]_51 chrX:21374662-21374782 0.00035 68_[+1]_44 chr2R:21056602-21056722 0.00035 60_[+1]_52 chr2R:12906041-12906161 0.00035 93_[+1]_19 chr2L:6990245-6990365 0.00035 61_[+1]_51 chr2L:8818346-8818466 0.00035 89_[+1]_23 chrX:5993943-5994063 0.00035 44_[+1]_68 chr3R:21636490-21636610 0.00035 87_[+1]_25 chr3L:22405846-22405966 0.00035 79_[+1]_33 chr2R:17703620-17703740 0.00035 99_[+1]_13 chr2L:14483550-14483670 0.00038 61_[+1]_51 chr3R:23212463-23212583 0.00038 83_[+1]_29 chr2L:2901567-2901687 0.00038 19_[+1]_93 chr2R:23573818-23573938 0.00038 76_[+1]_36 chr3L:1165990-1166110 0.00038 49_[+1]_63 chrX:18565222-18565342 0.00038 53_[+1]_59 chr2R:24034595-24034715 0.00038 47_[+1]_65 chrX:17733076-17733196 0.00038 68_[+1]_44 chrX:1233387-1233507 0.00038 81_[+1]_31 chr2L:3532659-3532779 0.00038 13_[+1]_99 chr2L:8957312-8957432 0.00038 56_[+1]_56 chr2L:11226182-11226302 0.00038 95_[+1]_17 chr3L:8824573-8824693 0.00038 48_[+1]_64 chr3R:29269406-29269526 0.0004 85_[+1]_27 chr2R:6515154-6515274 0.0004 17_[+1]_95 chr2R:23642094-23642214 0.0004 52_[+1]_60 chrX:5075997-5076117 0.0004 61_[+1]_51 chrX:766298-766418 0.0004 12_[+1]_100 chrX:512645-512765 0.0004 29_[+1]_83 chrX:6996269-6996389 0.0004 111_[+1]_1 chrX:20520593-20520713 0.00044 42_[+1]_70 chr2L:285214-285334 0.00044 48_[+1]_64 chr3R:4979324-4979444 0.00047 80_[+1]_32 chrX:17193225-17193345 0.00047 84_[+1]_28 chrX:10815129-10815249 0.00047 73_[+1]_39 chr2R:5362480-5362600 0.00052 33_[+1]_79 chrX:9248142-9248262 0.00057 59_[+1]_53 chr2R:10976881-10977001 0.00057 106_[+1]_6 chr2L:4104062-4104182 0.00057 22_[+1]_90 chr3L:10867360-10867480 0.00057 34_[+1]_78 chr3R:26093896-26094016 0.00057 74_[+1]_38 chr3L:816603-816723 0.00057 20_[+1]_92 chr3L:11242499-11242619 0.00057 56_[+1]_56 chr3L:6993424-6993544 0.00057 32_[+1]_80 chr3L:9136762-9136882 0.00057 53_[+1]_59 chrX:17258406-17258526 0.00065 62_[+1]_50 chrX:842074-842194 0.00065 8_[+1]_104 chr3R:4964175-4964295 0.00065 56_[+1]_56 chr3R:4974075-4974195 0.00065 85_[+1]_27 chr3R:11992678-11992798 0.00065 29_[+1]_83 chr2R:15667247-15667367 0.00075 74_[+1]_38 chr3R:15580050-15580170 0.00075 102_[+1]_10 chr2L:15315083-15315203 0.00082 93_[+1]_19 chrX:8414552-8414672 0.00082 58_[+1]_54 chr3R:22287653-22287773 0.00082 89_[+1]_23 chr3R:18050772-18050892 0.00082 64_[+1]_48 chrX:15733687-15733807 0.00082 36_[+1]_76 chr3L:19147389-19147509 0.0009 98_[+1]_14 chr3R:25246992-25247112 0.0009 67_[+1]_45 chr3L:3863595-3863715 0.0009 73_[+1]_39 chrX:2307811-2307931 0.00096 20_[+1]_92 chr3L:14151554-14151674 0.00096 67_[+1]_45 chrX:19788938-19789058 0.00096 24_[+1]_88 chr2R:24842756-24842876 0.001 12_[+1]_100 chr3R:14467430-14467550 0.0011 29_[+1]_83 chr3L:5817347-5817467 0.0011 40_[+1]_72 chrX:8636802-8636922 0.0011 91_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGHRM width=8 seqs=149 chr2L:3849734-3849854 ( 74) CACTGCAA 1 chrX:9285824-9285944 ( 42) CACTGCAA 1 chrX:17712319-17712439 ( 40) CACTGCAA 1 chr2L:19103967-19104087 ( 34) CACTGCAA 1 chr3R:20753407-20753527 ( 56) CACTGCAA 1 chrX:17836544-17836664 ( 49) CACTGCAA 1 chrX:12647288-12647408 ( 42) CACTGCAA 1 chr2L:15319266-15319386 ( 11) CACTGAAA 1 chr3R:30770223-30770343 ( 15) CACTGAAA 1 chr3R:30794613-30794733 ( 21) CACTGAAA 1 chrX:21497082-21497202 ( 38) CACTGAAA 1 chr2L:11346180-11346300 ( 92) CACTGCGA 1 chr3R:28591227-28591347 ( 65) CACTGAAA 1 chr2L:4043022-4043142 ( 71) CACTGAAA 1 chrX:2394388-2394508 ( 22) CACTGAAA 1 chr2R:6597664-6597784 ( 26) CACTGAAA 1 chrX:8399234-8399354 ( 52) CACTGCGA 1 chr3R:30903562-30903682 ( 49) CACTGAAA 1 chr3L:20306391-20306511 ( 72) CACTGAAA 1 chrX:16808737-16808857 ( 38) CACTGAAA 1 chr2R:12278081-12278201 ( 56) CACTGAAA 1 chrX:8775308-8775428 ( 65) CACTGCGA 1 chr3L:22949734-22949854 ( 58) CACTGAAA 1 chr2L:1972340-1972460 ( 8) CACTGAAA 1 chr3R:27280820-27280940 ( 15) CACTGCGA 1 chr3L:14639892-14640012 ( 24) CACTGAAA 1 chr3R:10553643-10553763 ( 21) CACTGCGA 1 chr2R:23209350-23209470 ( 31) CACTGCGA 1 chr3L:1418939-1419059 ( 26) CACTGCGA 1 chr3R:8140503-8140623 ( 45) CACTGAAA 1 chr3L:18367824-18367944 ( 72) CACTGAGA 1 chrX:7122110-7122230 ( 15) CACTGAGA 1 chr2L:3740621-3740741 ( 73) CAGTGCAA 1 chr3R:30310097-30310217 ( 1) CACTGAGA 1 chrX:17912641-17912761 ( 60) CACTGCAC 1 chr2R:10682694-10682814 ( 41) CACTGCAC 1 chrX:2298526-2298646 ( 32) CACTGAGA 1 chr2R:9944561-9944681 ( 29) CACTGAGA 1 chr3R:8867487-8867607 ( 57) CACTGAGA 1 chr3R:10226332-10226452 ( 103) CACTGCGC 1 chr3L:10525246-10525366 ( 22) CAGTGAAA 1 chr3R:24031008-24031128 ( 57) CAGTGAAA 1 chr3R:21295191-21295311 ( 44) CACTGAAC 1 chr3R:15313843-15313963 ( 51) CACTGTAA 1 chr3L:15517698-15517818 ( 40) CACTGAAC 1 chr3R:18228861-18228981 ( 17) CACTGAGC 1 chr2R:14432633-14432753 ( 35) CAGTGAGA 1 chr3L:15798503-15798623 ( 30) CACTGAGC 1 chr3L:11427114-11427234 ( 106) CAGTGCAC 1 chr2R:15471921-15472041 ( 54) CACTGAAG 1 chr3L:810269-810389 ( 101) CAGTGCAC 1 chr3R:16836139-16836259 ( 15) CACTGTGA 1 chr3L:9423924-9424044 ( 23) CACTGAGC 1 chr2R:11547227-11547347 ( 3) CAGTGAGA 1 chr3L:722021-722141 ( 24) CACTGAGC 1 chr3R:5682468-5682588 ( 86) CAGTGCAC 1 chrX:454230-454350 ( 54) CAGTGCAC 1 chr3R:31683172-31683292 ( 1) CACTGAGC 1 chr3R:8288929-8289049 ( 24) CACTGTGA 1 chr3R:19315761-19315881 ( 44) CACTGAGC 1 chr3R:8799573-8799693 ( 43) CAGTGTAA 1 chr2R:15737193-15737313 ( 27) CACTGAGG 1 chrX:2951838-2951958 ( 94) CAGTGCAG 1 chr2L:14586862-14586982 ( 96) CAGTGCAG 1 chr2L:15370216-15370336 ( 47) CAGTGCAG 1 chr3R:14445216-14445336 ( 89) CAGTGTAA 1 chr3L:20644893-20645013 ( 72) CAGTGTAA 1 chr2L:1652074-1652194 ( 38) CAGTGAAC 1 chr3R:19301544-19301664 ( 66) CAGTGCAG 1 chrX:11800111-11800231 ( 56) CACTGAGG 1 chrX:19716648-19716768 ( 108) CAGTGAAC 1 chrX:12671613-12671733 ( 10) CAGTGCAG 1 chr2L:4110339-4110459 ( 63) CAGTGTAA 1 chrX:10809722-10809842 ( 17) CACTGAGG 1 chr3R:8689121-8689241 ( 79) CACTGAGG 1 chr2R:19811371-19811491 ( 3) CACTGAGG 1 chrX:464099-464219 ( 5) CACTGAGG 1 chrX:3348837-3348957 ( 77) CAGTGTGA 1 chr3R:30021072-30021192 ( 55) CACTGTGC 1 chr2L:11239921-11240041 ( 33) CAGTGTGA 1 chr2R:23648125-23648245 ( 24) CACTGTGG 1 chr3R:14879095-14879215 ( 76) CAGTGTAC 1 chr2R:15902659-15902779 ( 62) CAGTGTAC 1 chrX:21374662-21374782 ( 69) CAGTGTAC 1 chr2R:21056602-21056722 ( 61) CAGTGTAC 1 chr2R:12906041-12906161 ( 94) CAGTGTAC 1 chr2L:6990245-6990365 ( 62) CAGTGTAC 1 chr2L:8818346-8818466 ( 90) CAGTGTAC 1 chrX:5993943-5994063 ( 45) CAGTGTAC 1 chr3R:21636490-21636610 ( 88) CAGTGTAC 1 chr3L:22405846-22405966 ( 80) CAGTGTAC 1 chr2R:17703620-17703740 ( 100) CAGTGTAC 1 chr2L:14483550-14483670 ( 62) CAGTGTGC 1 chr3R:23212463-23212583 ( 84) CAGTGTAG 1 chr2L:2901567-2901687 ( 20) CACTGGAA 1 chr2R:23573818-23573938 ( 77) CAGTGTAG 1 chr3L:1165990-1166110 ( 50) CAGTGTAG 1 chrX:18565222-18565342 ( 54) CAGTGTAG 1 chr2R:24034595-24034715 ( 48) CAGTGTGC 1 chrX:17733076-17733196 ( 69) CAGTGTAG 1 chrX:1233387-1233507 ( 82) CAGTGTAG 1 chr2L:3532659-3532779 ( 14) CACTGGAA 1 chr2L:8957312-8957432 ( 57) CAGTGTAG 1 chr2L:11226182-11226302 ( 96) CAGTGTGC 1 chr3L:8824573-8824693 ( 49) CAGTGTAG 1 chr3R:29269406-29269526 ( 86) CAGTGTGG 1 chr2R:6515154-6515274 ( 18) CACTGGGA 1 chr2R:23642094-23642214 ( 53) CACTGGGA 1 chrX:5075997-5076117 ( 62) CACTGGGA 1 chrX:766298-766418 ( 13) CACTGGGA 1 chrX:512645-512765 ( 30) CACTGGGA 1 chrX:6996269-6996389 ( 112) CAGTGTGG 1 chrX:20520593-20520713 ( 43) CACTGGGC 1 chr2L:285214-285334 ( 49) CACTGGAG 1 chr3R:4979324-4979444 ( 81) CAGTGGAG 1 chrX:17193225-17193345 ( 85) CAGTGGAG 1 chrX:10815129-10815249 ( 74) CAGTGGAG 1 chr2R:5362480-5362600 ( 34) CACAGCAA 1 chrX:9248142-9248262 ( 60) CACAGCGA 1 chr2R:10976881-10977001 ( 107) CAGTGCAT 1 chr2L:4104062-4104182 ( 23) CAGTGCAT 1 chr3L:10867360-10867480 ( 35) CAGTGCAT 1 chr3R:26093896-26094016 ( 75) CAGTGCAT 1 chr3L:816603-816723 ( 21) CACAGAAA 1 chr3L:11242499-11242619 ( 57) CAGTGCAT 1 chr3L:6993424-6993544 ( 33) CACAGCGA 1 chr3L:9136762-9136882 ( 54) CAGTGCAT 1 chrX:17258406-17258526 ( 63) CACAGAGA 1 chrX:842074-842194 ( 9) CACAGAGA 1 chr3R:4964175-4964295 ( 57) CACAGAGA 1 chr3R:4974075-4974195 ( 86) CACAGAGA 1 chr3R:11992678-11992798 ( 30) CACAGCAC 1 chr2R:15667247-15667367 ( 75) CACTGTGT 1 chr3R:15580050-15580170 ( 103) CAGAGAAA 1 chr2L:15315083-15315203 ( 94) CAGTGTAT 1 chrX:8414552-8414672 ( 59) CAGAGAGA 1 chr3R:22287653-22287773 ( 90) CAGTGTAT 1 chr3R:18050772-18050892 ( 65) CAGTGTAT 1 chrX:15733687-15733807 ( 37) CAGTGTAT 1 chr3L:19147389-19147509 ( 99) CAGTGTGT 1 chr3R:25246992-25247112 ( 68) CAGAGCAG 1 chr3L:3863595-3863715 ( 74) CACAGTAC 1 chrX:2307811-2307931 ( 21) CACAGTGC 1 chr3L:14151554-14151674 ( 68) CAGAGAAG 1 chrX:19788938-19789058 ( 25) CAGAGAAG 1 chr2R:24842756-24842876 ( 13) CACAGGAA 1 chr3R:14467430-14467550 ( 30) CACAGGGA 1 chr3L:5817347-5817467 ( 41) CACAGGGA 1 chrX:8636802-8636922 ( 92) CACAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.44197 E= 1.0e-059 -1386 237 -1386 -1386 171 -1386 -1386 -1386 -1386 155 117 -1386 -118 -1386 -1386 149 -1386 -1386 237 -1386 19 40 -85 -9 102 -1386 98 -1386 62 33 10 -194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 1.0e-059 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.563758 0.436242 0.000000 0.134228 0.000000 0.000000 0.865772 0.000000 0.000000 1.000000 0.000000 0.348993 0.255034 0.107383 0.288591 0.617450 0.000000 0.382550 0.000000 0.469799 0.241611 0.208054 0.080537 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGHRM MEME-1 regular expression -------------------------------------------------------------------------------- CA[CG]TG[ATC][AG][ACG] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAY MEME-2 width = 8 sites = 32 llr = 283 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9:a:6:a1 pos.-specific C 1a:a2a:5 probability G ::::2::2 matrix T :::::::3 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 *** ** Relative 1.4 *** ** Entropy 1.2 **** ** (12.7 bits) 0.9 **** ** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14467430-14467550 21 1.20e-05 tatatGGCAC ACACACAC ACACAGGGAT chr3R:18228861-18228981 47 1.20e-05 TGTTTGTCGG ACACACAC CAGATGGATG chr2R:16080679-16080799 65 1.20e-05 AGCCACACAA ACACACAC GCGATAGACA chrX:17193225-17193345 35 1.20e-05 ccacacaaac acacacac cacacaATAA chrX:3348837-3348957 87 1.20e-05 CAGTGTGACC ACACACAC ATAGGGGGAA chrX:17712319-17712439 23 1.20e-05 GTGAAAacac acacacac acacaAGTAC chr2L:8296566-8296686 14 1.20e-05 GGactcacgc acacacac aaacgcacca chrX:19782733-19782853 44 1.20e-05 GCACACTAAC ACACACAC TCGAAAAAAA chr2R:9944561-9944681 2 1.20e-05 C ACACACAC ACGGCGACGC chr2R:23648125-23648245 13 2.72e-05 TGTCACATAC ACACGCAC ACACACTGTG chr3R:21094683-21094803 1 2.72e-05 . ACACCCAC TTACAGACGA chrX:16800107-16800227 31 2.72e-05 AGCAACAATT ACACGCAC GCCAGCGAAG chr3R:15313843-15313963 90 2.72e-05 GAATGTGGCC ACACCCAC ACGACCAGTT chr4:1093481-1093601 24 5.85e-05 CAAATAATAT ACACACAT ATGTTTTCCT chrX:21497082-21497202 1 5.85e-05 . ACACACAT TCGCAGGATG chr2R:10976881-10977001 91 5.85e-05 GTAACGATGC ACACACAG ATTTCTCGCA chr3R:19301544-19301664 10 5.85e-05 TTCTAGAAT ACACACAT ATCCTGATTA chrX:11800111-11800231 35 5.85e-05 acagatacat acacacat acagGGCGGC chrX:17179313-17179433 22 5.85e-05 CTTGACATGC ACACACAT ACACTCGAAA chr3R:4974075-4974195 46 5.85e-05 CGCTCGTTCG ACACACAT AATGGATGTC chr3R:30310097-30310217 15 6.61e-05 GAGAAAATTA CCACACAC AAAAAAAAAA chr2L:2901567-2901687 2 1.25e-04 A ACACGCAG CACATGACTG chrX:454230-454350 97 1.25e-04 CCTTGTAAAA ACACCCAG CATGTGGGCA chr3L:10518113-10518233 54 1.25e-04 CCCTGCAAAT ACACGCAG CGAAATAGTT chrX:512645-512765 113 1.25e-04 TCGAGAGAGA ACACACAA chr3L:14790880-14791000 48 1.25e-04 ACGCACGCAT ACACGCAG CGAAAAAAGT chrX:12647288-12647408 31 1.34e-04 TCAATGTCAC CCACCCAC CACCACTGCA chr2R:6597664-6597784 79 1.58e-04 CTTTCTAATA ACACCCAA TAGTTCGAAT chr2L:11794907-11795027 29 1.58e-04 AAATCCAAAA ACACCCAA AAACTAACAC chrX:12671613-12671733 58 1.58e-04 GGAATAAAAA ACACGCAA AGAAAATCAG chr3R:20753407-20753527 81 1.78e-04 TTGTACCTGA CCACACAT TGAAACCATG chr2R:12278081-12278201 47 1.78e-04 TACTCAGACA CCACACAT ACACTGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14467430-14467550 1.2e-05 20_[+2]_92 chr3R:18228861-18228981 1.2e-05 46_[+2]_66 chr2R:16080679-16080799 1.2e-05 64_[+2]_48 chrX:17193225-17193345 1.2e-05 34_[+2]_78 chrX:3348837-3348957 1.2e-05 86_[+2]_26 chrX:17712319-17712439 1.2e-05 22_[+2]_90 chr2L:8296566-8296686 1.2e-05 13_[+2]_99 chrX:19782733-19782853 1.2e-05 43_[+2]_69 chr2R:9944561-9944681 1.2e-05 1_[+2]_111 chr2R:23648125-23648245 2.7e-05 12_[+2]_100 chr3R:21094683-21094803 2.7e-05 [+2]_112 chrX:16800107-16800227 2.7e-05 30_[+2]_82 chr3R:15313843-15313963 2.7e-05 89_[+2]_23 chr4:1093481-1093601 5.8e-05 23_[+2]_89 chrX:21497082-21497202 5.8e-05 [+2]_112 chr2R:10976881-10977001 5.8e-05 90_[+2]_22 chr3R:19301544-19301664 5.8e-05 9_[+2]_103 chrX:11800111-11800231 5.8e-05 34_[+2]_78 chrX:17179313-17179433 5.8e-05 21_[+2]_91 chr3R:4974075-4974195 5.8e-05 45_[+2]_67 chr3R:30310097-30310217 6.6e-05 14_[+2]_98 chr2L:2901567-2901687 0.00012 1_[+2]_111 chrX:454230-454350 0.00012 96_[+2]_16 chr3L:10518113-10518233 0.00012 53_[+2]_59 chrX:512645-512765 0.00012 112_[+2] chr3L:14790880-14791000 0.00012 47_[+2]_65 chrX:12647288-12647408 0.00013 30_[+2]_82 chr2R:6597664-6597784 0.00016 78_[+2]_34 chr2L:11794907-11795027 0.00016 28_[+2]_84 chrX:12671613-12671733 0.00016 57_[+2]_55 chr3R:20753407-20753527 0.00018 80_[+2]_32 chr2R:12278081-12278201 0.00018 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAY width=8 seqs=32 chr3R:14467430-14467550 ( 21) ACACACAC 1 chr3R:18228861-18228981 ( 47) ACACACAC 1 chr2R:16080679-16080799 ( 65) ACACACAC 1 chrX:17193225-17193345 ( 35) ACACACAC 1 chrX:3348837-3348957 ( 87) ACACACAC 1 chrX:17712319-17712439 ( 23) ACACACAC 1 chr2L:8296566-8296686 ( 14) ACACACAC 1 chrX:19782733-19782853 ( 44) ACACACAC 1 chr2R:9944561-9944681 ( 2) ACACACAC 1 chr2R:23648125-23648245 ( 13) ACACGCAC 1 chr3R:21094683-21094803 ( 1) ACACCCAC 1 chrX:16800107-16800227 ( 31) ACACGCAC 1 chr3R:15313843-15313963 ( 90) ACACCCAC 1 chr4:1093481-1093601 ( 24) ACACACAT 1 chrX:21497082-21497202 ( 1) ACACACAT 1 chr2R:10976881-10977001 ( 91) ACACACAG 1 chr3R:19301544-19301664 ( 10) ACACACAT 1 chrX:11800111-11800231 ( 35) ACACACAT 1 chrX:17179313-17179433 ( 22) ACACACAT 1 chr3R:4974075-4974195 ( 46) ACACACAT 1 chr3R:30310097-30310217 ( 15) CCACACAC 1 chr2L:2901567-2901687 ( 2) ACACGCAG 1 chrX:454230-454350 ( 97) ACACCCAG 1 chr3L:10518113-10518233 ( 54) ACACGCAG 1 chrX:512645-512765 ( 113) ACACACAA 1 chr3L:14790880-14791000 ( 48) ACACGCAG 1 chrX:12647288-12647408 ( 31) CCACCCAC 1 chr2R:6597664-6597784 ( 79) ACACCCAA 1 chr2L:11794907-11795027 ( 29) ACACCCAA 1 chrX:12671613-12671733 ( 58) ACACGCAA 1 chr3R:20753407-20753527 ( 81) CCACACAT 1 chr2R:12278081-12278201 ( 47) CCACACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 3.1e-001 152 -63 -1164 -1164 -1164 237 -1164 -1164 171 -1164 -1164 -1164 -1164 237 -1164 -1164 103 -4 -5 -1164 -1164 237 -1164 -1164 171 -1164 -1164 -1164 -129 128 -31 -30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.1e-001 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.187500 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.468750 0.156250 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAY MEME-2 regular expression -------------------------------------------------------------------------------- ACACACA[CT] -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-3 width = 8 sites = 24 llr = 221 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::1:::: pos.-specific C :2:::::: probability G 18191a:a matrix T 8:9:9:a: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * *** Relative 1.4 ******* Entropy 1.2 ******* (13.3 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14483550-14483670 73 1.27e-05 Agtgtgcgtg tgtgtgtg tgtTTTGGAC chr2R:24034595-24034715 37 1.27e-05 TGTGTATGCA TGTGTGTG CTGCAGTGTG chr2L:6990245-6990365 1 1.27e-05 . TGTGTGTG CCCGCCGACC chrX:8399234-8399354 12 1.27e-05 tgtttgtgtg tgtgtgtg tgtgcgagtg chr2L:1652074-1652194 80 1.27e-05 tttatgtgtg tgtgtgtg tgtgtgtgtg chrX:13821402-13821522 108 1.27e-05 tgtgcgtgcg tgtgtgtg tatgt chr2R:18437842-18437962 76 1.27e-05 AGTGTAAGAG TGTGTGTG GAGAGGGAAT chr3R:24031008-24031128 83 2.08e-05 GTGGTTGGTG GGTGTGTG GGtttcttct chr3R:17681385-17681505 76 2.08e-05 TGTTTTTTGC GGTGTGTG GTGTCTTCTT chr3L:3142985-3143105 4 2.08e-05 CGT GGTGTGTG TTTGTTTGTT chrX:842074-842194 57 3.35e-05 TAAGGGTTCT TCTGTGTG CATAAAGTAT chrX:16800107-16800227 73 3.35e-05 CCCGtttctt tctgtgtg tttatctgtt chr4:396059-396179 112 3.35e-05 TCCACGTGAG TCTGTGTG C chr2R:13188814-13188934 83 3.35e-05 GAAAAATTTC TCTGTGTG TATTTCTGTA chrX:2307811-2307931 102 4.61e-05 GATTTCTTCG AGTGTGTG GCATACAATG chr2L:11794907-11795027 80 4.61e-05 GACGTGTGAT AGTGTGTG TTTGCGACTT chr3L:722021-722141 44 4.61e-05 AATCATGATC AGTGTGTG GTAATTGTCT chr3R:21094683-21094803 74 6.21e-05 CTGTTTATTT TGGGTGTG TTTTCAAAAA chrX:9248142-9248262 25 6.21e-05 TGTTTGTTGG TGTGGGTG GTGCTCCTTT chr2L:2863396-2863516 58 6.21e-05 AACATCCAAA TGGGTGTG CAAATGCATA chr3L:6993424-6993544 46 6.21e-05 AGCGAGAAAT TGTGGGTG GGGTGTATAC chr3L:20306391-20306511 62 8.22e-05 TTTGTATGTA TGTATGTG TGCACTGAAA chr2R:10819367-10819487 67 8.22e-05 TGTATGCGCA TGTATGTG TGCCTCACGT chrX:464099-464219 98 8.22e-05 GCTGTGTATA TGTATGTG TTGGCGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14483550-14483670 1.3e-05 72_[+3]_40 chr2R:24034595-24034715 1.3e-05 36_[+3]_76 chr2L:6990245-6990365 1.3e-05 [+3]_112 chrX:8399234-8399354 1.3e-05 11_[+3]_101 chr2L:1652074-1652194 1.3e-05 79_[+3]_33 chrX:13821402-13821522 1.3e-05 107_[+3]_5 chr2R:18437842-18437962 1.3e-05 75_[+3]_37 chr3R:24031008-24031128 2.1e-05 82_[+3]_30 chr3R:17681385-17681505 2.1e-05 75_[+3]_37 chr3L:3142985-3143105 2.1e-05 3_[+3]_109 chrX:842074-842194 3.3e-05 56_[+3]_56 chrX:16800107-16800227 3.3e-05 72_[+3]_40 chr4:396059-396179 3.3e-05 111_[+3]_1 chr2R:13188814-13188934 3.3e-05 82_[+3]_30 chrX:2307811-2307931 4.6e-05 101_[+3]_11 chr2L:11794907-11795027 4.6e-05 79_[+3]_33 chr3L:722021-722141 4.6e-05 43_[+3]_69 chr3R:21094683-21094803 6.2e-05 73_[+3]_39 chrX:9248142-9248262 6.2e-05 24_[+3]_88 chr2L:2863396-2863516 6.2e-05 57_[+3]_55 chr3L:6993424-6993544 6.2e-05 45_[+3]_67 chr3L:20306391-20306511 8.2e-05 61_[+3]_51 chr2R:10819367-10819487 8.2e-05 66_[+3]_46 chrX:464099-464219 8.2e-05 97_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=24 chr2L:14483550-14483670 ( 73) TGTGTGTG 1 chr2R:24034595-24034715 ( 37) TGTGTGTG 1 chr2L:6990245-6990365 ( 1) TGTGTGTG 1 chrX:8399234-8399354 ( 12) TGTGTGTG 1 chr2L:1652074-1652194 ( 80) TGTGTGTG 1 chrX:13821402-13821522 ( 108) TGTGTGTG 1 chr2R:18437842-18437962 ( 76) TGTGTGTG 1 chr3R:24031008-24031128 ( 83) GGTGTGTG 1 chr3R:17681385-17681505 ( 76) GGTGTGTG 1 chr3L:3142985-3143105 ( 4) GGTGTGTG 1 chrX:842074-842194 ( 57) TCTGTGTG 1 chrX:16800107-16800227 ( 73) TCTGTGTG 1 chr4:396059-396179 ( 112) TCTGTGTG 1 chr2R:13188814-13188934 ( 83) TCTGTGTG 1 chrX:2307811-2307931 ( 102) AGTGTGTG 1 chr2L:11794907-11795027 ( 80) AGTGTGTG 1 chr3L:722021-722141 ( 44) AGTGTGTG 1 chr3R:21094683-21094803 ( 74) TGGGTGTG 1 chrX:9248142-9248262 ( 25) TGTGGGTG 1 chr2L:2863396-2863516 ( 58) TGGGTGTG 1 chr3L:6993424-6993544 ( 46) TGTGGGTG 1 chr3L:20306391-20306511 ( 62) TGTATGTG 1 chr2R:10819367-10819487 ( 67) TGTATGTG 1 chrX:464099-464219 ( 98) TGTATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 1.8e+002 -129 -1123 -63 128 -1123 -21 210 -1123 -1123 -1123 -122 157 -129 -1123 217 -1123 -1123 -1123 -122 157 -1123 -1123 237 -1123 -1123 -1123 -1123 170 -1123 -1123 237 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.8e+002 0.125000 0.000000 0.125000 0.750000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.083333 0.916667 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAGTGCA MEME-4 width = 8 sites = 7 llr = 79 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C ::::::a: probability G :a:a:a:: matrix T a:::a::: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10226332-10226452 56 1.24e-05 TATTTTCTTT TGAGTGCA CGAATTGTCA chrX:18565222-18565342 62 1.24e-05 TTCAGTGTAG TGAGTGCA TTGCGGCATC chrX:20520593-20520713 28 1.24e-05 ACAGGGATGG TGAGTGCA TTGTTTACAC chr2L:3543285-3543405 50 1.24e-05 GTTTTTTTTC TGAGTGCA GGACTTGAGC chr2L:7263013-7263133 112 1.24e-05 AGTTTTTTTC TGAGTGCA G chrX:10110954-10111074 57 1.24e-05 CCGGTTTTTA TGAGTGCA TCATGAATAC chr3L:17417560-17417680 101 1.24e-05 GTTACCAAAA TGAGTGCA GAGCCATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10226332-10226452 1.2e-05 55_[+4]_57 chrX:18565222-18565342 1.2e-05 61_[+4]_51 chrX:20520593-20520713 1.2e-05 27_[+4]_85 chr2L:3543285-3543405 1.2e-05 49_[+4]_63 chr2L:7263013-7263133 1.2e-05 111_[+4]_1 chrX:10110954-10111074 1.2e-05 56_[+4]_56 chr3L:17417560-17417680 1.2e-05 100_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAGTGCA width=8 seqs=7 chr3R:10226332-10226452 ( 56) TGAGTGCA 1 chrX:18565222-18565342 ( 62) TGAGTGCA 1 chrX:20520593-20520713 ( 28) TGAGTGCA 1 chr2L:3543285-3543405 ( 50) TGAGTGCA 1 chr2L:7263013-7263133 ( 112) TGAGTGCA 1 chrX:10110954-10111074 ( 57) TGAGTGCA 1 chr3L:17417560-17417680 ( 101) TGAGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 2.4e+004 -945 -945 -945 170 -945 -945 236 -945 171 -945 -945 -945 -945 -945 236 -945 -945 -945 -945 170 -945 -945 236 -945 -945 237 -945 -945 171 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAGTGCA MEME-4 regular expression -------------------------------------------------------------------------------- TGAGTGCA -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYTYKC MEME-5 width = 8 sites = 76 llr = 550 E-value = 4.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::31519 probability G ::::::4: matrix T 9aa79561 bits 2.4 2.1 1.9 1.7 ** * Relative 1.4 ** * Entropy 1.2 *** * * (10.5 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTCTC consensus C TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8799573-8799693 81 5.18e-05 TCAATCAACT TTTTTCGC GCACAGACCA chrX:16800107-16800227 50 5.18e-05 CCAGCGAAGC TTTTTCGC TGCCCCCCGt chr3R:14457135-14457255 67 5.18e-05 cctttcccct tttttctc catgtgtatt chr3R:18927792-18927912 43 5.18e-05 TGTGCTTAGT TTTTTCTC TGTGCAATCT chr2R:15117736-15117856 87 5.18e-05 TGTCCCCTCT TTTTTCTC TGTGCATGTT chr2L:14448082-14448202 82 5.18e-05 TTTTCACCAG TTTTTCTC AGTGTCTATT chr3L:3142985-3143105 68 5.18e-05 TCGTTCAGTG TTTTTCGC TGTAGTGCCT chrX:3837816-3837936 48 5.18e-05 GGGACTCCAG TTTTTCGC TGAGTGTGGC chr3R:25176690-25176810 109 5.18e-05 GCACTCGTTA TTTTTCTC CGTG chr2R:16080679-16080799 42 8.43e-05 CGTGTCGAAT TTTCTCGC GGTGCAGCCA chr3L:15798503-15798623 108 8.43e-05 CTGTTTCAGT TTTCTCTC TCTGT chr3L:810269-810389 51 8.43e-05 TCAGCCATAA TTTCTCGC AGTGCACAGA chr2L:10607357-10607477 91 8.43e-05 AACCTCCAAT TTTCTCTC AGTGTTGGGA chr3R:25246992-25247112 44 8.43e-05 ATTGGCACAT TTTCTCTC GGTGTATCAA chr2L:1474365-1474485 84 8.43e-05 GTACTTGGCA TTTCTCTC AGTGTTTAAC chrX:12647288-12647408 61 8.43e-05 GACGCCTCCG TTTCTCGC TGTGTACTCG chr3L:1418939-1419059 98 8.43e-05 CTACTTGTCG TTTCTCGC AGTGCATGAT chrX:2304811-2304931 66 8.43e-05 AAAAGATCCG TTTCTCGC CGTGTATGCG chr3L:19556089-19556209 66 1.67e-04 GAGTCACCGA TTTTTTTC CGTGTTTAAG chr2L:3740621-3740741 65 1.67e-04 TGACACTAGA TTTTTTTC CAGTGCAATC chr2L:11346180-11346300 78 1.67e-04 TAGTAGGATT TTTTTTGC GCAGTGCACT chr2R:17581898-17582018 8 1.67e-04 TTCCTCA TTTTTTTC CAAGACTTAA chr3R:5023852-5023972 46 1.67e-04 TGGTCCTAGC TTTTTTTC ATTCTATGTG chrX:10815129-10815249 65 1.67e-04 AGGGAGGGGG TTTTTTTC TCAGTGGAGA chr2L:4104062-4104182 94 1.67e-04 TCTCATCTTT TTTTTTGC AGTGATTGCC chr4:396059-396179 50 1.67e-04 CTTTCTGGTC TTTTTTTC AAGTGTATTA chr2L:1652074-1652194 54 1.67e-04 ACTGAACCCC TTTTTTGC ACtgtgtgtt chr2L:3543285-3543405 42 1.67e-04 GAGAAGACGT TTTTTTTC TGAGTGCAGG chr2R:12278081-12278201 76 1.67e-04 AATTTCCGAG TTTTTTGC AAAACAAATT chr3R:17681385-17681505 68 1.67e-04 GCGTGGCATG TTTTTTGC GGTGTGTGGT chr2L:8296566-8296686 103 1.67e-04 TCTTCTCTCT TTTTTTTC GGTTAGATTC chrX:4584286-4584406 93 1.67e-04 TTGTTTGCTT TTTTTTTC TTTTACTTTA chr3R:5682468-5682588 75 1.67e-04 AGTAGCCATC TTTTTTTC TTGCAGTGCA chr2L:7263013-7263133 104 1.67e-04 TAAGTTGGAG TTTTTTTC TGAGTGCAG chr2L:8957312-8957432 95 1.67e-04 CCGTAGCCGG TTTTTTTC CGGTTTTGAA chrX:464099-464219 80 1.67e-04 TACTATTTTT TTTTTTTC GCTGTGTATA chr3R:8140503-8140623 68 1.67e-04 CGGAAATTAC TTTTTTGC AATAATTAAC chr3R:24031008-24031128 112 2.19e-04 tcgttctttc tttctttc t chr3R:30310097-30310217 92 2.19e-04 ATATATTACA TTTCTTTC GGTGCCCCCG chrX:842074-842194 105 2.19e-04 ACTGGTTGCC TTTCTTTC GGGCAGTG chrX:3348837-3348957 10 2.19e-04 ATGTTTCCA TTTCTTTC CATTGCTTAA chr2R:18442477-18442597 70 2.19e-04 AGTGATCATA TTTCTTTC TGTGTAGGTT chr2R:24805899-24806019 64 2.19e-04 GGTTACCCTA TTTCTTGC AGTGCTCCCG chr2R:23209350-23209470 113 2.19e-04 GTAAAACTTC TTTCTTTC chrX:8414552-8414672 112 2.39e-04 CTTGACCCCC TTTTTCCC A chr3R:22287653-22287773 80 2.39e-04 CTAGATGGCG TTTTTCCC CCCAGTGTAT chr2R:19811371-19811491 87 2.39e-04 TCCTCTGAGA TTTTTCCC AGTGTTCCTT chr3R:8930620-8930740 60 2.51e-04 CTTGTGATAT TTTCTCCC CGTGTACGAG chrX:8775308-8775428 21 2.51e-04 CCAAAGGACC TTTCTCCC TTTTGTTTTC chrX:4669483-4669603 39 3.16e-04 AGTTGAGATG CTTTTCTC ACCGTGTAAC chr2L:14483550-14483670 53 3.16e-04 ACCCCACACC CTTTTCTC GCAgtgtgcg chr3R:29269406-29269526 77 3.16e-04 ATGATAGCCT CTTTTCGC TCAGTGTGGG chr3R:19301544-19301664 57 3.16e-04 TAGCACTAGT CTTTTCTC GCAGTGCAGA chr3L:20306391-20306511 10 3.16e-04 TCACTCTCG CTTTTCGC CTGCGCAGTT chr3R:4974075-4974195 14 3.16e-04 TGTTGTTTAT TTTTCCTC GCATTTTGTT chr3R:19324937-19325057 47 3.16e-04 TGCCTCATAT TTTTCCGC TGTGTACTAG chr3L:8824573-8824693 40 3.16e-04 TCATGCGTGA CTTTTCTC GCAGTGTAGG chr2R:18675253-18675373 54 3.89e-04 CCTGCATGGG TTTTTTCC AAGTGCACAT chrX:4561993-4562113 65 3.89e-04 TTCGATCCCA TTTCCCTC AATGTATTTC chr3L:591494-591614 107 3.89e-04 AAGCATCCGA TTTCCCGC AGTGCA chr3L:14151554-14151674 79 4.09e-04 AGAGAAGTCG TTTCTTCC AGTGTCTTTT chr3L:7953915-7954035 96 5.12e-04 ATTTTTCCTA TTTTCTTC ATAATTCGAT chr2L:15315083-15315203 83 5.12e-04 AAATGCCTTA CTTTTTGC CGGCAGTGTA chr3L:1165990-1166110 9 5.12e-04 AAAACAGC TTTTCTTC AACCATTATG chr2L:6990245-6990365 54 5.12e-04 ATCAGCCCAC TTTTCTGC CAGTGTACGC chr4:400885-401005 102 5.12e-04 TGGGAACGAT TTTTCTGC GTGTACCCGC chr2R:17803428-17803548 97 5.12e-04 TTATAGATCC CTTTTTTC GGGAGATTCC chr3R:14879095-14879215 52 6.60e-04 AACTTGTTAG TTTTTCGT GATCGAATAT chrX:12671613-12671733 1 6.60e-04 . TTTTTCGT TCAGTGCAGC chrX:2951838-2951958 2 7.12e-04 T TTTCTCTT ATTTTAACCT chr2R:6750493-6750613 96 7.12e-04 AATTCCGCAG TTTCTCGT CTCCAAATGT chr2L:709546-709666 105 7.12e-04 ATAACACTGC TTTCTCTT CGAAATAA chr2L:918489-918609 90 8.69e-04 CTCCCTATGA TTTTTTTT AATGATTTGT chr2R:21529423-21529543 70 8.69e-04 GTATAGTATA TTTTTTTT ACAGTGCTCA chr3L:22949734-22949854 84 9.67e-04 TGTTTATGCA TTTCTTGT GTTATTGCCT chrX:8636802-8636922 80 9.67e-04 ATCGGAAGAT TTTCTTTT AGTGCACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8799573-8799693 5.2e-05 80_[+5]_32 chrX:16800107-16800227 5.2e-05 49_[+5]_63 chr3R:14457135-14457255 5.2e-05 66_[+5]_46 chr3R:18927792-18927912 5.2e-05 42_[+5]_70 chr2R:15117736-15117856 5.2e-05 86_[+5]_26 chr2L:14448082-14448202 5.2e-05 81_[+5]_31 chr3L:3142985-3143105 5.2e-05 67_[+5]_45 chrX:3837816-3837936 5.2e-05 47_[+5]_65 chr3R:25176690-25176810 5.2e-05 108_[+5]_4 chr2R:16080679-16080799 8.4e-05 41_[+5]_71 chr3L:15798503-15798623 8.4e-05 107_[+5]_5 chr3L:810269-810389 8.4e-05 50_[+5]_62 chr2L:10607357-10607477 8.4e-05 90_[+5]_22 chr3R:25246992-25247112 8.4e-05 43_[+5]_69 chr2L:1474365-1474485 8.4e-05 83_[+5]_29 chrX:12647288-12647408 8.4e-05 60_[+5]_52 chr3L:1418939-1419059 8.4e-05 97_[+5]_15 chrX:2304811-2304931 8.4e-05 65_[+5]_47 chr3L:19556089-19556209 0.00017 65_[+5]_47 chr2L:3740621-3740741 0.00017 64_[+5]_48 chr2L:11346180-11346300 0.00017 77_[+5]_35 chr2R:17581898-17582018 0.00017 7_[+5]_105 chr3R:5023852-5023972 0.00017 45_[+5]_67 chrX:10815129-10815249 0.00017 64_[+5]_48 chr2L:4104062-4104182 0.00017 93_[+5]_19 chr4:396059-396179 0.00017 49_[+5]_63 chr2L:1652074-1652194 0.00017 53_[+5]_59 chr2L:3543285-3543405 0.00017 41_[+5]_71 chr2R:12278081-12278201 0.00017 75_[+5]_37 chr3R:17681385-17681505 0.00017 67_[+5]_45 chr2L:8296566-8296686 0.00017 102_[+5]_10 chrX:4584286-4584406 0.00017 92_[+5]_20 chr3R:5682468-5682588 0.00017 74_[+5]_38 chr2L:7263013-7263133 0.00017 103_[+5]_9 chr2L:8957312-8957432 0.00017 94_[+5]_18 chrX:464099-464219 0.00017 79_[+5]_33 chr3R:8140503-8140623 0.00017 67_[+5]_45 chr3R:24031008-24031128 0.00022 111_[+5]_1 chr3R:30310097-30310217 0.00022 91_[+5]_21 chrX:842074-842194 0.00022 104_[+5]_8 chrX:3348837-3348957 0.00022 9_[+5]_103 chr2R:18442477-18442597 0.00022 69_[+5]_43 chr2R:24805899-24806019 0.00022 63_[+5]_49 chr2R:23209350-23209470 0.00022 112_[+5] chrX:8414552-8414672 0.00024 111_[+5]_1 chr3R:22287653-22287773 0.00024 79_[+5]_33 chr2R:19811371-19811491 0.00024 86_[+5]_26 chr3R:8930620-8930740 0.00025 59_[+5]_53 chrX:8775308-8775428 0.00025 20_[+5]_92 chrX:4669483-4669603 0.00032 38_[+5]_74 chr2L:14483550-14483670 0.00032 52_[+5]_60 chr3R:29269406-29269526 0.00032 76_[+5]_36 chr3R:19301544-19301664 0.00032 56_[+5]_56 chr3L:20306391-20306511 0.00032 9_[+5]_103 chr3R:4974075-4974195 0.00032 13_[+5]_99 chr3R:19324937-19325057 0.00032 46_[+5]_66 chr3L:8824573-8824693 0.00032 39_[+5]_73 chr2R:18675253-18675373 0.00039 53_[+5]_59 chrX:4561993-4562113 0.00039 64_[+5]_48 chr3L:591494-591614 0.00039 106_[+5]_6 chr3L:14151554-14151674 0.00041 78_[+5]_34 chr3L:7953915-7954035 0.00051 95_[+5]_17 chr2L:15315083-15315203 0.00051 82_[+5]_30 chr3L:1165990-1166110 0.00051 8_[+5]_104 chr2L:6990245-6990365 0.00051 53_[+5]_59 chr4:400885-401005 0.00051 101_[+5]_11 chr2R:17803428-17803548 0.00051 96_[+5]_16 chr3R:14879095-14879215 0.00066 51_[+5]_61 chrX:12671613-12671733 0.00066 [+5]_112 chrX:2951838-2951958 0.00071 1_[+5]_111 chr2R:6750493-6750613 0.00071 95_[+5]_17 chr2L:709546-709666 0.00071 104_[+5]_8 chr2L:918489-918609 0.00087 89_[+5]_23 chr2R:21529423-21529543 0.00087 69_[+5]_43 chr3L:22949734-22949854 0.00097 83_[+5]_29 chrX:8636802-8636922 0.00097 79_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYTYKC width=8 seqs=76 chr3R:8799573-8799693 ( 81) TTTTTCGC 1 chrX:16800107-16800227 ( 50) TTTTTCGC 1 chr3R:14457135-14457255 ( 67) TTTTTCTC 1 chr3R:18927792-18927912 ( 43) TTTTTCTC 1 chr2R:15117736-15117856 ( 87) TTTTTCTC 1 chr2L:14448082-14448202 ( 82) TTTTTCTC 1 chr3L:3142985-3143105 ( 68) TTTTTCGC 1 chrX:3837816-3837936 ( 48) TTTTTCGC 1 chr3R:25176690-25176810 ( 109) TTTTTCTC 1 chr2R:16080679-16080799 ( 42) TTTCTCGC 1 chr3L:15798503-15798623 ( 108) TTTCTCTC 1 chr3L:810269-810389 ( 51) TTTCTCGC 1 chr2L:10607357-10607477 ( 91) TTTCTCTC 1 chr3R:25246992-25247112 ( 44) TTTCTCTC 1 chr2L:1474365-1474485 ( 84) TTTCTCTC 1 chrX:12647288-12647408 ( 61) TTTCTCGC 1 chr3L:1418939-1419059 ( 98) TTTCTCGC 1 chrX:2304811-2304931 ( 66) TTTCTCGC 1 chr3L:19556089-19556209 ( 66) TTTTTTTC 1 chr2L:3740621-3740741 ( 65) TTTTTTTC 1 chr2L:11346180-11346300 ( 78) TTTTTTGC 1 chr2R:17581898-17582018 ( 8) TTTTTTTC 1 chr3R:5023852-5023972 ( 46) TTTTTTTC 1 chrX:10815129-10815249 ( 65) TTTTTTTC 1 chr2L:4104062-4104182 ( 94) TTTTTTGC 1 chr4:396059-396179 ( 50) TTTTTTTC 1 chr2L:1652074-1652194 ( 54) TTTTTTGC 1 chr2L:3543285-3543405 ( 42) TTTTTTTC 1 chr2R:12278081-12278201 ( 76) TTTTTTGC 1 chr3R:17681385-17681505 ( 68) TTTTTTGC 1 chr2L:8296566-8296686 ( 103) TTTTTTTC 1 chrX:4584286-4584406 ( 93) TTTTTTTC 1 chr3R:5682468-5682588 ( 75) TTTTTTTC 1 chr2L:7263013-7263133 ( 104) TTTTTTTC 1 chr2L:8957312-8957432 ( 95) TTTTTTTC 1 chrX:464099-464219 ( 80) TTTTTTTC 1 chr3R:8140503-8140623 ( 68) TTTTTTGC 1 chr3R:24031008-24031128 ( 112) TTTCTTTC 1 chr3R:30310097-30310217 ( 92) TTTCTTTC 1 chrX:842074-842194 ( 105) TTTCTTTC 1 chrX:3348837-3348957 ( 10) TTTCTTTC 1 chr2R:18442477-18442597 ( 70) TTTCTTTC 1 chr2R:24805899-24806019 ( 64) TTTCTTGC 1 chr2R:23209350-23209470 ( 113) TTTCTTTC 1 chrX:8414552-8414672 ( 112) TTTTTCCC 1 chr3R:22287653-22287773 ( 80) TTTTTCCC 1 chr2R:19811371-19811491 ( 87) TTTTTCCC 1 chr3R:8930620-8930740 ( 60) TTTCTCCC 1 chrX:8775308-8775428 ( 21) TTTCTCCC 1 chrX:4669483-4669603 ( 39) CTTTTCTC 1 chr2L:14483550-14483670 ( 53) CTTTTCTC 1 chr3R:29269406-29269526 ( 77) CTTTTCGC 1 chr3R:19301544-19301664 ( 57) CTTTTCTC 1 chr3L:20306391-20306511 ( 10) CTTTTCGC 1 chr3R:4974075-4974195 ( 14) TTTTCCTC 1 chr3R:19324937-19325057 ( 47) TTTTCCGC 1 chr3L:8824573-8824693 ( 40) CTTTTCTC 1 chr2R:18675253-18675373 ( 54) TTTTTTCC 1 chrX:4561993-4562113 ( 65) TTTCCCTC 1 chr3L:591494-591614 ( 107) TTTCCCGC 1 chr3L:14151554-14151674 ( 79) TTTCTTCC 1 chr3L:7953915-7954035 ( 96) TTTTCTTC 1 chr2L:15315083-15315203 ( 83) CTTTTTGC 1 chr3L:1165990-1166110 ( 9) TTTTCTTC 1 chr2L:6990245-6990365 ( 54) TTTTCTGC 1 chr4:400885-401005 ( 102) TTTTCTGC 1 chr2R:17803428-17803548 ( 97) CTTTTTTC 1 chr3R:14879095-14879215 ( 52) TTTTTCGT 1 chrX:12671613-12671733 ( 1) TTTTTCGT 1 chrX:2951838-2951958 ( 2) TTTCTCTT 1 chr2R:6750493-6750613 ( 96) TTTCTCGT 1 chr2L:709546-709666 ( 105) TTTCTCTT 1 chr2L:918489-918609 ( 90) TTTTTTTT 1 chr2R:21529423-21529543 ( 70) TTTTTTTT 1 chr3L:22949734-22949854 ( 84) TTTCTTGT 1 chrX:8636802-8636922 ( 80) TTTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.43338 E= 4.4e+003 -1289 -87 -1289 154 -1289 -1289 -1289 170 -1289 -1289 -1289 170 -1289 83 -1289 109 -1289 -87 -1289 154 -1289 137 -1289 70 -1289 -107 87 84 -1289 219 -1289 -138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 4.4e+003 0.000000 0.105263 0.000000 0.894737 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.342105 0.000000 0.657895 0.000000 0.105263 0.000000 0.894737 0.000000 0.500000 0.000000 0.500000 0.000000 0.092105 0.355263 0.552632 0.000000 0.881579 0.000000 0.118421 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTYKC MEME-5 regular expression -------------------------------------------------------------------------------- TTT[TC]T[CT][TG]C -------------------------------------------------------------------------------- Time 31.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14790880-14791000 8.12e-02 120 chr3R:11992678-11992798 4.32e-01 120 chr3R:8140503-8140623 3.73e-02 44_[+1(3.92e-05)]_68 chr3L:8824573-8824693 3.45e-02 41_[+5(8.43e-05)]_71 chrX:6996269-6996389 1.97e-01 120 chr3L:9136762-9136882 1.42e-02 120 chr2R:21529423-21529543 4.19e-01 120 chrX:464099-464219 1.54e-03 81_[+5(5.18e-05)]_8_[+3(8.22e-05)]_\ 15 chr2R:17703620-17703740 1.25e-01 120 chr3R:19324937-19325057 1.65e-01 120 chrX:512645-512765 3.92e-03 120 chr3R:19315761-19315881 5.24e-02 120 chr4:850503-850623 4.94e-01 120 chrX:15733687-15733807 1.09e-01 120 chrX:17379631-17379751 2.33e-01 120 chrX:766298-766418 1.74e-01 120 chr3R:25176690-25176810 1.85e-01 108_[+5(5.18e-05)]_4 chr3R:8867487-8867607 3.67e-02 56_[+1(7.14e-05)]_56 chr3L:17417560-17417680 6.94e-02 100_[+4(1.24e-05)]_12 chr2L:11226182-11226302 1.85e-02 120 chrX:2304811-2304931 7.96e-02 65_[+5(8.43e-05)]_47 chrX:5075997-5076117 1.40e-01 120 chr2L:285014-285134 3.54e-01 120 chrX:6719439-6719559 1.24e-01 120 chr2R:19811371-19811491 8.38e-02 120 chr2R:13188814-13188934 1.08e-02 82_[+3(3.35e-05)]_30 chr3L:10518113-10518233 1.06e-01 120 chr3L:22405846-22405966 1.79e-01 120 chr3L:1418939-1419059 7.77e-03 25_[+1(3.92e-05)]_64_[+5(8.43e-05)]_\ 15 chr2R:10819367-10819487 3.28e-02 66_[+3(8.22e-05)]_46 chr2R:9944561-9944681 6.76e-03 1_[+2(1.20e-05)]_19_[+1(7.14e-05)]_\ 84 chr2R:23209350-23209470 2.10e-03 30_[+1(3.92e-05)]_82 chr3R:18050772-18050892 2.07e-01 120 chrX:19788938-19789058 2.53e-01 120 chr3R:10553643-10553763 3.52e-02 20_[+1(3.92e-05)]_92 chr2L:8957312-8957432 1.18e-02 120 chr3R:8689121-8689241 1.34e-01 120 chr3R:8288929-8289049 1.10e-01 120 chrX:12256789-12256909 8.87e-01 120 chrX:12647288-12647408 1.48e-04 41_[+1(1.22e-05)]_11_[+5(8.43e-05)]_\ 52 chr3L:14639892-14640012 1.69e-02 23_[+1(3.92e-05)]_89 chrX:2298526-2298646 1.55e-01 31_[+1(7.14e-05)]_81 chr2R:11101334-11101454 7.85e-01 120 chr3R:31683172-31683292 1.15e-01 120 chr2R:17803428-17803548 5.70e-01 120 chrX:3837816-3837936 1.38e-02 47_[+5(5.18e-05)]_65 chr3R:21636490-21636610 3.50e-01 120 chrX:454230-454350 2.99e-03 120 chr3L:15517698-15517818 4.79e-01 120 chrX:5993943-5994063 3.68e-01 120 chrX:10110954-10111074 8.19e-02 56_[+4(1.24e-05)]_56 chr3L:3863595-3863715 4.31e-01 120 chr3R:27280820-27280940 6.98e-02 14_[+1(3.92e-05)]_98 chr2L:7263013-7263133 1.34e-03 111_[+4(1.24e-05)]_1 chr3L:18316527-18316647 6.33e-01 120 chr2L:5050281-5050401 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************