******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/zen.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:9700160-9700280 1.0000 120 chr3R:5211540-5211660 1.0000 120 chr3L:16772894-16773014 1.0000 120 chr2L:89297-89417 1.0000 120 chr2R:24808749-24808869 1.0000 120 chr3R:19332191-19332311 1.0000 120 chr3L:8826177-8826297 1.0000 120 chr3L:1471176-1471296 1.0000 120 chr3L:9013884-9014004 1.0000 120 chr3R:29307209-29307329 1.0000 120 chrX:19786982-19787102 1.0000 120 chr3R:27445450-27445570 1.0000 120 chr3R:19839064-19839184 1.0000 120 chr2L:19341546-19341666 1.0000 120 chr2R:25107764-25107884 1.0000 120 chr3R:12382689-12382809 1.0000 120 chr2L:8872467-8872587 1.0000 120 chr3L:15039649-15039769 1.0000 120 chr3L:2408084-2408204 1.0000 120 chr3L:9017553-9017673 1.0000 120 chr3R:4270007-4270127 1.0000 120 chrX:17177717-17177837 1.0000 120 chr3L:16012429-16012549 1.0000 120 chr2L:3614678-3614798 1.0000 120 chr2L:15330780-15330900 1.0000 120 chr3R:21734612-21734732 1.0000 120 chr3R:15649064-15649184 1.0000 120 chr3L:22182887-22183007 1.0000 120 chrX:7035031-7035151 1.0000 120 chr3L:2385773-2385893 1.0000 120 chr3R:8203506-8203626 1.0000 120 chr2L:21339268-21339388 1.0000 120 chr2R:9981087-9981207 1.0000 120 chr2R:14454005-14454125 1.0000 120 chr3L:15508872-15508992 1.0000 120 chr2L:11756791-11756911 1.0000 120 chr3L:11692992-11693112 1.0000 120 chr3R:5118835-5118955 1.0000 120 chr2R:15002749-15002869 1.0000 120 chr3R:16506297-16506417 1.0000 120 chr3R:27931600-27931720 1.0000 120 chr3L:14989989-14990109 1.0000 120 chr3R:21458614-21458734 1.0000 120 chr3L:6500609-6500729 1.0000 120 chr3L:9002699-9002819 1.0000 120 chr2L:1508279-1508399 1.0000 120 chr2L:9146409-9146529 1.0000 120 chr2L:22151589-22151709 1.0000 120 chr3L:16564305-16564425 1.0000 120 chr2L:1511008-1511128 1.0000 120 chr3R:15654977-15655097 1.0000 120 chrX:4207737-4207857 1.0000 120 chr2R:12775848-12775968 1.0000 120 chr2L:12666106-12666226 1.0000 120 chr2L:14439767-14439887 1.0000 120 chr3R:13731136-13731256 1.0000 120 chr2R:7592821-7592941 1.0000 120 chrX:7059120-7059240 1.0000 120 chr3L:8687691-8687811 1.0000 120 chr2R:16252115-16252235 1.0000 120 chr2R:21529146-21529266 1.0000 120 chr3L:6068316-6068436 1.0000 120 chr2L:2448320-2448440 1.0000 120 chr2L:14773506-14773626 1.0000 120 chr2R:17803361-17803481 1.0000 120 chr2R:6511453-6511573 1.0000 120 chr3R:13811894-13812014 1.0000 120 chr2L:16329818-16329938 1.0000 120 chr3L:22181680-22181800 1.0000 120 chr3R:21478142-21478262 1.0000 120 chr3R:13879501-13879621 1.0000 120 chr2R:20033599-20033719 1.0000 120 chr3R:30568469-30568589 1.0000 120 chr3R:13899949-13900069 1.0000 120 chr2R:14983033-14983153 1.0000 120 chr3R:4634654-4634774 1.0000 120 chr2L:18135627-18135747 1.0000 120 chr3L:2385976-2386096 1.0000 120 chr3R:29459672-29459792 1.0000 120 chr3L:22783089-22783209 1.0000 120 chrX:19849378-19849498 1.0000 120 chr3R:4847550-4847670 1.0000 120 chr2L:11071008-11071128 1.0000 120 chr2L:12899416-12899536 1.0000 120 chr2L:15323344-15323464 1.0000 120 chrX:20678374-20678494 1.0000 120 chr2L:4281331-4281451 1.0000 120 chr3L:8660939-8661059 1.0000 120 chr3L:13056883-13057003 1.0000 120 chr3R:29771119-29771239 1.0000 120 chr3L:8481100-8481220 1.0000 120 chr3R:12123741-12123861 1.0000 120 chr2R:15034211-15034331 1.0000 120 chr2R:9405330-9405450 1.0000 120 chr3R:4923016-4923136 1.0000 120 chr3R:21825880-21826000 1.0000 120 chr2L:5238038-5238158 1.0000 120 chr3R:30856454-30856574 1.0000 120 chrX:3843715-3843835 1.0000 120 chr3R:30866008-30866128 1.0000 120 chr2R:10077298-10077418 1.0000 120 chrX:417392-417512 1.0000 120 chr3R:24726452-24726572 1.0000 120 chrX:2436507-2436627 1.0000 120 chr3L:14964948-14965068 1.0000 120 chr2L:15324574-15324694 1.0000 120 chr3R:26015287-26015407 1.0000 120 chr3R:25173134-25173254 1.0000 120 chr3R:16570623-16570743 1.0000 120 chr3L:8497541-8497661 1.0000 120 chr3R:8275140-8275260 1.0000 120 chr2L:9602188-9602308 1.0000 120 chr2R:19662017-19662137 1.0000 120 chr2R:25057047-25057167 1.0000 120 chr3R:8841408-8841528 1.0000 120 chr3R:4858176-4858296 1.0000 120 chr3R:4458436-4458556 1.0000 120 chr2R:8654926-8655046 1.0000 120 chr3L:15703484-15703604 1.0000 120 chrX:9789848-9789968 1.0000 120 chr3R:12128725-12128845 1.0000 120 chr2L:8510473-8510593 1.0000 120 chr2L:6543894-6544014 1.0000 120 chr3R:21506441-21506561 1.0000 120 chr2R:11532536-11532656 1.0000 120 chr3L:12647439-12647559 1.0000 120 chr3R:18991054-18991174 1.0000 120 chr2L:3541186-3541306 1.0000 120 chr2L:14577314-14577434 1.0000 120 chr3R:16526395-16526515 1.0000 120 chr3L:12465383-12465503 1.0000 120 chrX:15684531-15684651 1.0000 120 chr2L:600749-600869 1.0000 120 chr3L:1480927-1481047 1.0000 120 chr2L:11075225-11075345 1.0000 120 chr2R:24800863-24800983 1.0000 120 chr3R:29463761-29463881 1.0000 120 chrX:2982551-2982671 1.0000 120 chr3L:2438518-2438638 1.0000 120 chr3R:16390448-16390568 1.0000 120 chr3L:14153735-14153855 1.0000 120 chr3R:10222529-10222649 1.0000 120 chr3L:15701803-15701923 1.0000 120 chr2L:6373280-6373400 1.0000 120 chr3R:16570828-16570948 1.0000 120 chr3R:22223519-22223639 1.0000 120 chr2L:9150230-9150350 1.0000 120 chr3R:31852331-31852451 1.0000 120 chr2L:21853519-21853639 1.0000 120 chr3L:10966754-10966874 1.0000 120 chr2L:11794057-11794177 1.0000 120 chr2R:19840779-19840899 1.0000 120 chr3R:24846058-24846178 1.0000 120 chr2L:3078344-3078464 1.0000 120 chr3L:12603368-12603488 1.0000 120 chr2R:21193033-21193153 1.0000 120 chr2R:15904408-15904528 1.0000 120 chrX:8216278-8216398 1.0000 120 chr2L:15742832-15742952 1.0000 120 chr3L:14195439-14195559 1.0000 120 chr3L:4408962-4409082 1.0000 120 chr2R:20471210-20471330 1.0000 120 chr3L:19083283-19083403 1.0000 120 chr2R:15033030-15033150 1.0000 120 chr3L:25676960-25677080 1.0000 120 chr3L:735466-735586 1.0000 120 chr3L:4643927-4644047 1.0000 120 chr2R:8246285-8246405 1.0000 120 chr3R:29559716-29559836 1.0000 120 chr2R:5677808-5677928 1.0000 120 chr3R:7035820-7035940 1.0000 120 chr2L:3549847-3549967 1.0000 120 chr2R:20911166-20911286 1.0000 120 chr3R:23195821-23195941 1.0000 120 chr2L:1958542-1958662 1.0000 120 chr2L:18334018-18334138 1.0000 120 chr3R:18072265-18072385 1.0000 120 chr2R:21553403-21553523 1.0000 120 chr3R:28320783-28320903 1.0000 120 chr3R:30041016-30041136 1.0000 120 chrX:20739720-20739840 1.0000 120 chrX:17322262-17322382 1.0000 120 chr3L:14185233-14185353 1.0000 120 chr2L:2457136-2457256 1.0000 120 chr3R:13989047-13989167 1.0000 120 chr2L:20768486-20768606 1.0000 120 chr3R:4340322-4340442 1.0000 120 chr2R:14291303-14291423 1.0000 120 chrX:4613757-4613877 1.0000 120 chr3L:8653159-8653279 1.0000 120 chr3R:12645910-12646030 1.0000 120 chr3R:8965689-8965809 1.0000 120 chr3L:1772728-1772848 1.0000 120 chr3L:1410486-1410606 1.0000 120 chr3L:47774-47894 1.0000 120 chr3R:4875356-4875476 1.0000 120 chr3R:8151199-8151319 1.0000 120 chr2L:12466649-12466769 1.0000 120 chr2R:8638473-8638593 1.0000 120 chr2L:8849317-8849437 1.0000 120 chr2L:7296812-7296932 1.0000 120 chr3L:18218640-18218760 1.0000 120 chr3L:12649170-12649290 1.0000 120 chr2R:6557957-6558077 1.0000 120 chr3L:10105922-10106042 1.0000 120 chr3L:5983063-5983183 1.0000 120 chr3R:14477982-14478102 1.0000 120 chr3R:25195122-25195242 1.0000 120 chr2L:8875954-8876074 1.0000 120 chr2L:4823901-4824021 1.0000 120 chr3R:16554399-16554519 1.0000 120 chr2R:11191697-11191817 1.0000 120 chr3R:30313577-30313697 1.0000 120 chr3L:18307242-18307362 1.0000 120 chr2R:9419908-9420028 1.0000 120 chr2L:16274165-16274285 1.0000 120 chr2L:6241206-6241326 1.0000 120 chr2L:5234070-5234190 1.0000 120 chr3R:15583568-15583688 1.0000 120 chr2R:12530782-12530902 1.0000 120 chr3R:14037479-14037599 1.0000 120 chr3R:7155669-7155789 1.0000 120 chr2R:21367521-21367641 1.0000 120 chr2R:20959333-20959453 1.0000 120 chr2L:3818217-3818337 1.0000 120 chr2R:19979101-19979221 1.0000 120 chr2R:17753427-17753547 1.0000 120 chrX:20703065-20703185 1.0000 120 chr3L:9012339-9012459 1.0000 120 chr3R:15640110-15640230 1.0000 120 chrX:20717358-20717478 1.0000 120 chr3R:16829302-16829422 1.0000 120 chr3R:16534052-16534172 1.0000 120 chr2L:4282266-4282386 1.0000 120 chr2L:3822663-3822783 1.0000 120 chr2R:20056869-20056989 1.0000 120 chr3L:13069186-13069306 1.0000 120 chr3R:25173728-25173848 1.0000 120 chrX:5551003-5551123 1.0000 120 chr2R:12455137-12455257 1.0000 120 chr3L:9037737-9037857 1.0000 120 chr2R:7947879-7947999 1.0000 120 chr2L:5890705-5890825 1.0000 120 chr3L:17416652-17416772 1.0000 120 chr3L:17555915-17556035 1.0000 120 chr3L:15756087-15756207 1.0000 120 chrX:3841797-3841917 1.0000 120 chr3L:5856566-5856686 1.0000 120 chrX:11989021-11989141 1.0000 120 chr2L:12080093-12080213 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_zen/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/zen.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.238 G 0.247 T 0.258 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.238 G 0.248 T 0.258 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF NTAATTAV MEME-1 width = 8 sites = 210 llr = 1189 E-value = 6.7e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 219a::72 pos.-specific C 331::::3 probability G 3::::324 matrix T 36::a711 bits 2.1 1.9 ** 1.7 ** 1.5 *** Relative 1.2 *** Entropy 1.0 ***** (8.2 bits) 0.8 ***** 0.6 ****** 0.4 ****** 0.2 ****** 0.0 -------- Multilevel CTAATTAG consensus GC G C sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14037479-14037599 26 1.72e-05 AATTATGGTG CTAATTAG CGCAGCACAT chr3R:15583568-15583688 66 1.72e-05 TGCAGATCCT CTAATTAG TGCAAAGAAC chr2R:20911166-20911286 27 1.72e-05 TAGTAATTCA CTAATTAG TCGTTCAAAG chr2L:3541186-3541306 46 1.72e-05 CAATTAGAGT CTAATTAG CTAAGCGATT chr3L:6500609-6500729 7 1.72e-05 CCCCTG CTAATTAG CAGGTTCTGC chr3L:9013884-9014004 4 1.72e-05 TTG CTAATTAG AGGCAGACTG chr3L:19083283-19083403 75 3.37e-05 CCCGATTCTC CTAATTAC CTGTGCACAG chr3R:4458436-4458556 108 3.37e-05 CATTCCGCAG CTAATTAC CGAGT chr3R:16554399-16554519 112 7.03e-05 TATCGGGTCC GTAATTAG T chr3R:4340322-4340442 15 7.03e-05 CATCATTAGT TTAATTAG TTTTCAGGGC chr2R:10077298-10077418 29 7.03e-05 CCCGCTACCC GTAATTAG AACCCGTACT chr3L:6068316-6068436 65 7.03e-05 ACCAAATTGT TTAATTAG CAACAGCGCA chr3L:8687691-8687811 29 7.03e-05 TGGCTTAGGG GTAATTAG CACCGCCAAA chr3R:19839064-19839184 88 7.03e-05 GGCTAATGAC TTAATTAG CCCGCCAGTC chr2R:7947879-7947999 73 1.05e-04 AAGACCGTCC TTAATTAC AATGGGCCGG chr3R:16829302-16829422 42 1.05e-04 ACGTTTTGCT TTAATTAC TTTGTTTAAA chr2R:6557957-6558077 37 1.05e-04 GAAAAGCGAC TTAATTAC ACTCACTCAT chr2R:15904408-15904528 12 1.05e-04 ggcgCACGAG TTAATTAC GGTCCATTAG chr3R:24726452-24726572 31 1.05e-04 TAAGCGATTT TTAATTAC CTGTTATTGT chr2L:11756791-11756911 51 1.05e-04 GGTACTAAAG TTAATTAC TGCAATTTCC chr3R:27445450-27445570 3 1.05e-04 CA TTAATTAC AAAATGCGTG chr2L:6241206-6241326 24 1.24e-04 TCAACGCTGC ATAATTAG ACACCCCCCA chr2L:4823901-4824021 68 1.24e-04 TGGCAGCTCA ATAATTAG GCCGGAAAAA chr3R:22223519-22223639 41 1.24e-04 ATATAGCATA ATAATTAG GTGTAGAGTC chrX:2436507-2436627 64 1.24e-04 TTTTCGACGC ATAATTAG AAGCGGACTG chr2R:24808749-24808869 56 1.24e-04 GTACCAAAAT ATAATTAG CGAGCCGGGC chr3L:17555915-17556035 80 1.60e-04 GCAACTGAGG ATAATTAC CGCGAGGGAC chr3L:25676960-25677080 46 1.60e-04 ccttacaaga ctaattaa aatgtgatta chr3L:17416652-17416772 54 2.30e-04 TGGCATAATG CTAATGAG TTCCTAGTTT chr3L:18218640-18218760 92 2.30e-04 AATACATAAT CCAATTAG CATTTAACAG chr3R:8151199-8151319 113 2.30e-04 TCATTTGCCG TTAATTAA chr3R:7035820-7035940 37 2.30e-04 GGCCAGCTCT GTAATTAA GAAGTTGGCT chrX:2982551-2982671 22 2.30e-04 CTAAAGACAT CTAATGAG CATCATTAGG chrX:15684531-15684651 26 2.30e-04 TCGTCTCATG CTAATGAG GATACCTGTA chr2L:14439767-14439887 6 2.30e-04 GGGAA GTAATTAA AGATTTCCAA chr3L:9017553-9017673 77 2.30e-04 GCGCCTGCAT CTAATGAG CCTTTAACAG chr2R:14291303-14291423 98 2.79e-04 CAGCGCACGA CTAATGAC TCTCCACTCT chr2L:20768486-20768606 19 2.79e-04 TTGTGCGCCC CTAATGAC TTCCAGGTAA chr3R:10222529-10222649 32 2.79e-04 CATTTCCCGG CTAATGAC ACCAGGAAAA chr3L:1480927-1481047 75 2.79e-04 GGGGGTCCGT CTAATTAT CACATTTTTA chr3R:4858176-4858296 77 2.79e-04 GTCTGCTCGC CTAATGAC GAATGCATTT chr2L:9602188-9602308 51 2.79e-04 CGGCCTGACG CTAATGAC ACCAAACACC chr2L:5238038-5238158 18 2.79e-04 GTAGTCGTTG CTAATTAT GGCCTAGACT chr3R:15654977-15655097 51 2.79e-04 TAATTTGCTG CTAATGAC GTCGGTCGAC chr3L:9002699-9002819 44 2.79e-04 CGCGAGTGCG CTAATGAC ACAAATCCGT chr2R:12455137-12455257 83 3.67e-04 CATTTGGAAA GCAATTAG TGTAACTAAT chr2L:4282266-4282386 67 3.67e-04 ATTCTTGGGC ATAATTAA AAAGCCATTT chr3L:10105922-10106042 69 3.67e-04 GTTGGCCGGC TCAATTAG TCAACAATTA chr3R:4875356-4875476 73 3.67e-04 TGTTTGGTTA GCAATTAG GTGCATCCCG chr3L:1410486-1410606 16 3.67e-04 ATCGCAATTA GCAATTAG CACAACATTA chr2L:6373280-6373400 56 3.67e-04 GTTCGCGAAA ATAATTAA ATATCGGTTA chr2L:11075225-11075345 20 3.67e-04 ATCAGGCGGG GCAATTAG TTTTCCCTTT chrX:9789848-9789968 12 3.67e-04 CGGGGTCAAA GCAATTAG CAAACAGTGG chr2R:19662017-19662137 67 3.67e-04 TCGCAGAACT GCAATTAG GTTAGGACCA chr3R:16570623-16570743 29 3.67e-04 GTTGACATTT GCAATTAG CGCTAACAAA chr2L:4281331-4281451 72 3.67e-04 TATGAAATTG GCAATTAG TTGACTGTTG chrX:19849378-19849498 53 3.67e-04 ACCTCTGCGC GCAATTAG GCAAATTTGA chr3L:2385976-2386096 85 3.67e-04 GCTAGGGATG TCAATTAG CTTAtgttgc chr3R:13879501-13879621 67 3.67e-04 ATATCGGCAC TCAATTAG ATACGCTGGC chr2L:22151589-22151709 98 3.67e-04 TATAAACCGC GTAATGAG AGAAACAATT chr3L:1471176-1471296 44 3.67e-04 GTTTTGCGGC TCAATTAG GCGGCGGAGT chr3L:16772894-16773014 52 3.67e-04 TCTGGTGCGG TCAATTAG TCTGGACGTG chr2R:9700160-9700280 36 3.67e-04 GTTGGGCAAA TCAATTAG TCACAATGGC chr3L:5983063-5983183 64 4.71e-04 CACCAAGCAG TTAATGAC GTTGCAATGG chrX:17322262-17322382 61 4.71e-04 TGGCACAAGA TTAATGAC AAAACAATTA chr3R:18072265-18072385 67 4.71e-04 TAAGTAGTAT TTAATTAT TTTATGGACG chr2R:15033030-15033150 64 4.71e-04 TTTGTATGAG TTAATGAC TTGTAGATAG chr3L:12465383-12465503 53 4.71e-04 TAAAGTTACT GTAATGAC GGGTTTAAAA chr3R:8841408-8841528 26 4.71e-04 ACATGACGAA TTAATGAC AAGAATGTTA chr3R:30856454-30856574 11 4.71e-04 TTATCCAGGC GCAATTAC CTAGCGAAAC chr2R:15034211-15034331 73 4.71e-04 TCTTCCTCCC GTAATGAC ACTAAATGAG chr2L:18135627-18135747 30 4.71e-04 GGATGCCGAG GCAATTAC TGGCATCCAA chr2R:17803361-17803481 57 4.71e-04 CTACCAAGAA GTAATTAT AAACGCATCA chr3R:13731136-13731256 24 4.71e-04 gcacactcac TTAATTAT GCATTAGgct chr3R:5118835-5118955 38 4.71e-04 ATCTGGTTCC TTAATGAC AGGTTGAGAG chr3L:15508872-15508992 51 4.71e-04 TGCGGAAATT TTAATTAT GAGCAGGTAG chrX:19786982-19787102 56 4.71e-04 TGTGCCGCAG TTAATGAC TTTTTAATTG chr3R:5211540-5211660 65 4.71e-04 acggacagac gtaatgac agaccgtcgc chr2L:1958542-1958662 48 5.06e-04 GCTCTTTTTT ACAATTAG CTGCGGCCGC chr2L:15742832-15742952 60 6.09e-04 GCAACTTCCT CTAATGAA GATTAAGTGA chr2L:11794057-11794177 25 6.09e-04 ACTTGGAATA CTAATGAA TTCACGCAGT chr3L:10966754-10966874 98 6.09e-04 CGTGGGAATG CCAATTAA GCGGGGATGG chr3R:30866008-30866128 32 6.09e-04 AGACCGCCGG ATAatgac gatggtaatg chr2R:15002749-15002869 17 6.09e-04 CTGCGCAGCG CTAATGAA ATCAGACAAC chr2R:20056869-20056989 34 6.25e-04 TCTGGCATTA CTAATTGC CGATTCGTTA chr2R:19979101-19979221 17 6.25e-04 ACTCAGGTAG CTAATTGC AGTGAGACAG chr3R:16526395-16526515 42 6.25e-04 GGCTCTGCTC CTAATTGC CCCTTGTTCC chr3R:15649064-15649184 66 6.25e-04 TGTGGCATGC CTAATTGC GTCCCTTTCA chr3R:19332191-19332311 1 6.25e-04 . CTAATTGC CAAAGACAGC chr2L:89297-89417 42 6.25e-04 GTCTCAATCA CTAATTGC TTTTAGTCTG chr3L:1772728-1772848 93 7.47e-04 GGGACTTGAG GCAATTAA AGAGCGGCTC chrX:8216278-8216398 83 7.47e-04 TCATTAAATT GCAATTAA AGCGCTcaga chr2R:19840779-19840899 99 7.47e-04 CAAGAAATGG GCAATTAA ATTCCGGGAA chr3L:8497541-8497661 107 7.47e-04 AAATGCAATT TTAATGAA GCCAAA chr3R:21825880-21826000 76 7.47e-04 aacagcggca GCAATTAA CTGCAAAATG chr3R:12382689-12382809 66 7.47e-04 TCCTTGTTTT GCAATTAA TGTCACAAAT chr3R:29307209-29307329 74 7.47e-04 TGGTGGCTTT GCAATTAA CTGCATTGTT chr3L:8826177-8826297 50 7.47e-04 TAGTATCTTG TTAATGAA GAAATAGATA chrX:3841797-3841917 90 8.30e-04 CGGCTGCACC TTAATTGC CAACATGCAG chr3L:9012339-9012459 36 8.30e-04 GTCGAGCTAT TTAATTGC AAACAAATTA chrX:17177717-17177837 13 8.30e-04 AAGGAAACAG CTAATGAT GATGATTACC chr3L:2408084-2408204 7 8.30e-04 ATCCCG CTAATGAT GATGAACGGC chr3L:15039649-15039769 23 8.30e-04 AAGCGTTGGC CTAATGAT CTTTTAACAG chr2L:19341546-19341666 110 8.30e-04 ACGTCTTATG CTAATGAT AAT chr2R:21553403-21553523 77 9.49e-04 CTAAGGATTA CAAATTAG CCTTTTTGTG chr2R:20471210-20471330 90 9.49e-04 AAAATCCATC ACAATTAA AATCATTTTC chr2L:21853519-21853639 63 9.49e-04 TTCGTTCTGC CAAATTAG CCGGGCCCCG chr3R:29463761-29463881 32 9.49e-04 AGGACACAAA ACAATTAA CAACTTAACT chr2L:8510473-8510593 29 9.49e-04 CTGGAACCCA CTCATTAG CAGGCAGAAT chrX:3843715-3843835 4 9.49e-04 ATT CTCATTAG GAAGGGCCCA chr3R:13899949-13900069 105 9.49e-04 TCTTTATTCG CTCATTAG CAGCACGA chrX:7035031-7035151 94 9.49e-04 CCATTAAATG CTCATTAG AGTAAACAAA chr2L:12080093-12080213 85 1.12e-03 GCAATCATCG TTAATGAT GGCAATGTCC chrX:5551003-5551123 10 1.12e-03 TTGAGTGCG CAAATTAC GAGGAACAGG chr2L:3822663-3822783 78 1.12e-03 CACATTACGA TCAATTAT GAGACTGAAT chr2R:20959333-20959453 64 1.12e-03 CAGCGAGCAT CAAATTAC GAGGCTCACA chr2R:21367521-21367641 75 1.12e-03 CATAAAAATG TTAATGAT CTTTGACGGG chr2R:8638473-8638593 49 1.12e-03 CACGGCGTTG ATAATTGC CAAGACAGAC chr3L:14195439-14195559 97 1.12e-03 TGTGGACTTA CTAATTGA TTTTAAAGTA chr2R:9405330-9405450 5 1.12e-03 GAGT TTAATGAT CGCCGACTGC chr3L:8481100-8481220 47 1.12e-03 AAAGGGAAGT TTAATGAT TTTTAAATTA chr2L:12666106-12666226 12 1.12e-03 AGCCATTAAA TTAATGAT CTATCTGCAA chrX:4207737-4207857 82 1.12e-03 GCCGAGAACT GCAATTAT TTAACAATTA chr3R:21734612-21734732 10 1.12e-03 GCATCTTCT GCAATTAT TTGTGCATTA chr2L:8872467-8872587 53 1.12e-03 ACGCCTAAAA CTAATTGA GACCGCCCTC chr3R:25173728-25173848 36 1.21e-03 CATAAGAATC ACAATGAG GCCCGGAGTC chr3R:15640110-15640230 78 1.21e-03 TGCTAATGGC TTCATTAG GCTGTGCAGG chr3L:4643927-4644047 33 1.21e-03 AAAAATCCCA TAAATTAG GGCTTGCTGC chr3R:16390448-16390568 69 1.21e-03 GCGCGGCGTT GAAATTAG TTTTGAATCA chr3R:4634654-4634774 29 1.21e-03 TGGGATCCGC GTCATTAG CCCCTTGTCG chrX:7059120-7059240 6 1.21e-03 TTTTG GTCATTAG CGAAATGCAA chr3L:18307242-18307362 7 1.41e-03 TCAAGA ACAATTAT AGTTTAATAC chr2R:11191697-11191817 73 1.41e-03 GATGCACAGC ATAATGAT GCCATACCGT chr3R:30041016-30041136 2 1.41e-03 A ACAATTAT TGACGGAAAG chr2L:14577314-14577434 113 1.41e-03 CTACAAAATA ATAATGAT chr3R:8275140-8275260 96 1.41e-03 GCGTGCCCAA ACAATGAC ACAGTGGGCG chr3R:29771119-29771239 68 1.41e-03 GACACCTCAC CTAATGGG CCTCGCatcg chr3L:11692992-11693112 51 1.41e-03 CAAGGTCGAA GTCATTAC AGCAGGCAAA chr2R:12530782-12530902 64 1.51e-03 AAGAGTCATT ATCATTAG CTCAAAGCCA chr3R:12645910-12646030 32 1.51e-03 TAATCCCCTG CTAATGGC TTCTTGATGC chr2L:6543894-6544014 67 1.51e-03 AATATTTGTA ATCATTAG AGGGCATTAG chr2L:15324574-15324694 113 1.51e-03 TTTTCCATTT CTAATGGC chr3L:13056883-13057003 21 1.51e-03 TTTGGCCAAG ATCATTAG GAGAACACCG chr3R:8203506-8203626 65 1.51e-03 CCCAGAACCG ATCATTAG CATAAAGCCA chr3L:5856566-5856686 6 1.71e-03 AGCGG ATAATTGA GCCTAATAGG chrX:4613757-4613877 75 1.71e-03 TCCGGCAAAG TCAATTGG TTTCTAACGA chr3L:12603368-12603488 75 1.71e-03 GCCTGCCTGC ATAATTGA TGATTGCTTT chr2L:3078344-3078464 30 1.71e-03 TCCTGTCCAG CAAATTAA TAGCCATCAT chr3R:24846058-24846178 8 1.71e-03 GCAATAT CTCATTAA GCGTACCTAA chr2L:9150230-9150350 79 1.71e-03 AAAGAGCTAG GCAATTGG AATTGAAACG chrX:417392-417512 12 1.71e-03 TCAAATACCT AAAATTAC CTTGAAATGA chrX:20678374-20678494 8 1.71e-03 CCAACTC ATAATTGA AGTGTCTGCA chr3L:22783089-22783209 92 1.71e-03 CTTGGAAAAT GCAATGAA AGAGATTTAC chr2R:14454005-14454125 22 1.71e-03 CGCCAGACCC ATCATTAC CCCTTGACAG chr2R:8654926-8655046 69 1.87e-03 CAAGTTAACT GTAATTTG ACATGCTGGG chr3R:4923016-4923136 4 1.87e-03 GCC TTAATGGC AAGCTACATT chr2L:14773506-14773626 45 1.87e-03 TAATGTGAAT GTAATTTG TAGTTAATGT chr2R:21529146-21529266 48 1.87e-03 TGCAGCGGAA GTAATTTG AGGCTGATGA chr3R:27931600-27931720 76 1.87e-03 TAATTTAATT TTAATTGT TTAGGTCTTG chr3L:16012429-16012549 15 1.87e-03 ACTAATCAGT TTAATGGC CCGAAATGGC chr2L:5890705-5890825 96 2.07e-03 CGAATGCGAT TTAATTTC CATTGTCCCA chr2L:16274165-16274285 31 2.07e-03 ATGCAACAAA GTCATTAA ATCCGGCGAG chr2L:18334018-18334138 22 2.07e-03 ACATGGGATT TTCATTAA CAGAAAGGTT chr2R:11532536-11532656 85 2.07e-03 GCAGCAACTG CAAATGAG TTCCCACCGG chr3R:26015287-26015407 85 2.07e-03 TAAAGTCGGA ACAATGAA CAGGACCATC chr3L:14964948-14965068 79 2.07e-03 CGTTAGCAGG ACAATGAA CGACAGGACG chr2R:14983033-14983153 58 2.07e-03 GCGGCGCAAA GTCATTAA CAACAATTTG chr2R:12775848-12775968 68 2.07e-03 GGTGAGAAGG ACAATGAA TGCCCCGAGG chr2L:9146409-9146529 34 2.07e-03 GCGACAGGCG TTCATTAA GAACGTATCC chr3L:12649170-12649290 7 2.29e-03 CCCCTG ATAATTGT TTCTTATCGG chr2L:7296812-7296932 61 2.29e-03 TACCGATCGC ACAATTGC AAATGTTTTT chr3L:14185233-14185353 112 2.29e-03 GGGCGTTTGC CAAATGAC T chr3R:12123741-12123861 59 2.29e-03 TCATCAGCAG ACAATTGC TGGCTACTAT chr2R:20033599-20033719 6 2.29e-03 AACCT ATAATTTG GAAGAACACT chr2L:11071008-11071128 13 2.46e-03 CGCGCCGAAC GCCATTAG TACATTCAAT chr3L:16564305-16564425 18 2.46e-03 TCGAGTGACC GAAATGAG CTACCACATG chr2L:1508279-1508399 34 2.46e-03 GCAGTTTATG TAAATGAG GCTGGACCGC chr3R:21458614-21458734 27 2.46e-03 GGTGCGGCAG TCCATTAG CCACCAACGC chr3R:16506297-16506417 3 2.46e-03 AT TAAATGAG CTGAATGCAT chr3R:12128725-12128845 13 2.73e-03 CGTTTTGTTT GCCATTAC CTTAATGCGT chr3L:15703484-15703604 22 2.73e-03 GGGCCATAAA GTCATGAC ATCCTGCCGG chr2L:1511008-1511128 28 2.73e-03 TTATTAAATT GCCATTAC CTAAGCCGGA chr2R:17753427-17753547 16 2.89e-03 CATGGGGAAA GTAATTTA TGACCCTACA chr2R:9981087-9981207 39 2.89e-03 TTGGCACAAG CCAATGGC TTATTAATGC chr3L:15756087-15756207 34 3.17e-03 GTGCACTTTT CAAATTGG GGCGTGTCCG chr3R:25195122-25195242 86 3.17e-03 TGCGTAAGCA CTAATTTT TGTGTGCGCT chr3L:47774-47894 32 3.17e-03 GGAGAGGCCT CAAATGAA GTAATAAGCA chr3R:16570828-16570948 27 3.17e-03 GGCTCTCTCT ACCATTAC AACCATCTCT chr3R:29459672-29459792 26 3.17e-03 GGGGCACTGA ATAATGGA CATCATGCGG chr2R:9419908-9420028 75 3.39e-03 CACATAGCCG GCAATTGT TTGGCCAACT chr3R:8965689-8965809 52 3.39e-03 GTGCAAATAA CAAATTGC GCAGAAGTCA chr3L:8660939-8661059 40 3.39e-03 GTCGGCGGCG TTAATGTG AGGGCAAACA chr3R:4847550-4847670 70 3.39e-03 CTGCGAGGAT GCAATTTG CCTTCGGCCA chr3R:21478142-21478262 107 3.39e-03 CTTGTCGGTA CAAATTGC ATATAA chr2L:12466649-12466769 40 3.70e-03 TTCGGTGAGA GCCATTAA ATCGTTTTAT chr3R:30568469-30568589 81 3.70e-03 CGGGCAATGT GTAATTTT CGATGTAAAC chr3L:22181680-22181800 31 3.70e-03 CCCTCCAGGC TAAATTGG CTTGAATTTT chr2R:16252115-16252235 62 3.70e-03 TATTCGTGTT TCAATTTC GTTGAAGTTC chr3L:735466-735586 20 3.93e-03 TGCGGCATTA ACAATGGC CTGCGAGACT chr3L:12647439-12647559 60 3.93e-03 GGCGATCGGG GTCATTGC GGTTTTCGGG chr2R:7592821-7592941 51 4.15e-03 GCGGGTGGTC ACCATTAA CACGATTTCA chr3R:21506441-21506561 33 4.39e-03 CAGCGGCCTC CAAATTGA TTTCCCAGCG chr3R:4270007-4270127 75 4.54e-03 TTAATAACTG GCAATTTA GACTAGTGCG chr3L:14153735-14153855 48 4.84e-03 CATTAGTCAG ACAATGGA ATGGGCTAGG chr2L:21339268-21339388 38 4.84e-03 GAAGGCCAAA CAAATGGG CCTATTATAA chr2R:25107764-25107884 96 5.06e-03 AAATCAAATA AACATTAG CAGCATAAGA chr3L:9037737-9037857 71 5.39e-03 AAGTAGCTAT TTAATGTT CTCAGATGCC chr2L:8875954-8876074 37 5.39e-03 CAGCCTGGCG TTAATGTT CCGCTTGCAG chr3L:4408962-4409082 14 5.39e-03 TACTGACGTG GCAATTTT GGACAGTCCC chr2L:15330780-15330900 88 5.39e-03 TAGAGGAGAC GTCATGGG CAGCTTGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14037479-14037599 1.7e-05 25_[+1]_87 chr3R:15583568-15583688 1.7e-05 65_[+1]_47 chr2R:20911166-20911286 1.7e-05 26_[+1]_86 chr2L:3541186-3541306 1.7e-05 45_[+1]_67 chr3L:6500609-6500729 1.7e-05 6_[+1]_106 chr3L:9013884-9014004 1.7e-05 3_[+1]_109 chr3L:19083283-19083403 3.4e-05 74_[+1]_38 chr3R:4458436-4458556 3.4e-05 107_[+1]_5 chr3R:16554399-16554519 7e-05 111_[+1]_1 chr3R:4340322-4340442 7e-05 14_[+1]_98 chr2R:10077298-10077418 7e-05 28_[+1]_84 chr3L:6068316-6068436 7e-05 64_[+1]_48 chr3L:8687691-8687811 7e-05 28_[+1]_84 chr3R:19839064-19839184 7e-05 87_[+1]_25 chr2R:7947879-7947999 0.00011 72_[+1]_40 chr3R:16829302-16829422 0.00011 41_[+1]_71 chr2R:6557957-6558077 0.00011 36_[+1]_76 chr2R:15904408-15904528 0.00011 11_[+1]_101 chr3R:24726452-24726572 0.00011 30_[+1]_82 chr2L:11756791-11756911 0.00011 50_[+1]_62 chr3R:27445450-27445570 0.00011 2_[+1]_110 chr2L:6241206-6241326 0.00012 23_[+1]_89 chr2L:4823901-4824021 0.00012 67_[+1]_45 chr3R:22223519-22223639 0.00012 40_[+1]_72 chrX:2436507-2436627 0.00012 63_[+1]_49 chr2R:24808749-24808869 0.00012 55_[+1]_57 chr3L:17555915-17556035 0.00016 79_[+1]_33 chr3L:25676960-25677080 0.00016 45_[+1]_67 chr3L:17416652-17416772 0.00023 53_[+1]_59 chr3L:18218640-18218760 0.00023 91_[+1]_21 chr3R:8151199-8151319 0.00023 112_[+1] chr3R:7035820-7035940 0.00023 36_[+1]_76 chrX:2982551-2982671 0.00023 21_[+1]_91 chrX:15684531-15684651 0.00023 25_[+1]_87 chr2L:14439767-14439887 0.00023 5_[+1]_107 chr3L:9017553-9017673 0.00023 76_[+1]_36 chr2R:14291303-14291423 0.00028 97_[+1]_15 chr2L:20768486-20768606 0.00028 18_[+1]_94 chr3R:10222529-10222649 0.00028 31_[+1]_81 chr3L:1480927-1481047 0.00028 74_[+1]_38 chr3R:4858176-4858296 0.00028 76_[+1]_36 chr2L:9602188-9602308 0.00028 50_[+1]_62 chr2L:5238038-5238158 0.00028 17_[+1]_95 chr3R:15654977-15655097 0.00028 50_[+1]_62 chr3L:9002699-9002819 0.00028 43_[+1]_69 chr2R:12455137-12455257 0.00037 82_[+1]_30 chr2L:4282266-4282386 0.00037 66_[+1]_46 chr3L:10105922-10106042 0.00037 68_[+1]_44 chr3R:4875356-4875476 0.00037 72_[+1]_40 chr3L:1410486-1410606 0.00037 15_[+1]_97 chr2L:6373280-6373400 0.00037 55_[+1]_57 chr2L:11075225-11075345 0.00037 19_[+1]_93 chrX:9789848-9789968 0.00037 11_[+1]_101 chr2R:19662017-19662137 0.00037 66_[+1]_46 chr3R:16570623-16570743 0.00037 28_[+1]_84 chr2L:4281331-4281451 0.00037 71_[+1]_41 chrX:19849378-19849498 0.00037 52_[+1]_60 chr3L:2385976-2386096 0.00037 84_[+1]_28 chr3R:13879501-13879621 0.00037 66_[+1]_46 chr2L:22151589-22151709 0.00037 97_[+1]_15 chr3L:1471176-1471296 0.00037 43_[+1]_69 chr3L:16772894-16773014 0.00037 51_[+1]_61 chr2R:9700160-9700280 0.00037 35_[+1]_77 chr3L:5983063-5983183 0.00047 63_[+1]_49 chrX:17322262-17322382 0.00047 60_[+1]_52 chr3R:18072265-18072385 0.00047 66_[+1]_46 chr2R:15033030-15033150 0.00047 63_[+1]_49 chr3L:12465383-12465503 0.00047 52_[+1]_60 chr3R:8841408-8841528 0.00047 25_[+1]_87 chr3R:30856454-30856574 0.00047 10_[+1]_102 chr2R:15034211-15034331 0.00047 72_[+1]_40 chr2L:18135627-18135747 0.00047 29_[+1]_83 chr2R:17803361-17803481 0.00047 56_[+1]_56 chr3R:13731136-13731256 0.00047 23_[+1]_89 chr3R:5118835-5118955 0.00047 37_[+1]_75 chr3L:15508872-15508992 0.00047 50_[+1]_62 chrX:19786982-19787102 0.00047 55_[+1]_57 chr3R:5211540-5211660 0.00047 64_[+1]_48 chr2L:1958542-1958662 0.00051 47_[+1]_65 chr2L:15742832-15742952 0.00061 59_[+1]_53 chr2L:11794057-11794177 0.00061 24_[+1]_88 chr3L:10966754-10966874 0.00061 97_[+1]_15 chr3R:30866008-30866128 0.00061 31_[+1]_81 chr2R:15002749-15002869 0.00061 16_[+1]_96 chr2R:20056869-20056989 0.00063 33_[+1]_79 chr2R:19979101-19979221 0.00063 16_[+1]_96 chr3R:16526395-16526515 0.00063 41_[+1]_71 chr3R:15649064-15649184 0.00063 65_[+1]_47 chr3R:19332191-19332311 0.00063 [+1]_112 chr2L:89297-89417 0.00063 41_[+1]_71 chr3L:1772728-1772848 0.00075 92_[+1]_20 chrX:8216278-8216398 0.00075 82_[+1]_30 chr2R:19840779-19840899 0.00075 98_[+1]_14 chr3L:8497541-8497661 0.00075 106_[+1]_6 chr3R:21825880-21826000 0.00075 75_[+1]_37 chr3R:12382689-12382809 0.00075 65_[+1]_47 chr3R:29307209-29307329 0.00075 73_[+1]_39 chr3L:8826177-8826297 0.00075 49_[+1]_63 chrX:3841797-3841917 0.00083 89_[+1]_23 chr3L:9012339-9012459 0.00083 35_[+1]_77 chrX:17177717-17177837 0.00083 12_[+1]_100 chr3L:2408084-2408204 0.00083 6_[+1]_106 chr3L:15039649-15039769 0.00083 22_[+1]_90 chr2L:19341546-19341666 0.00083 109_[+1]_3 chr2R:21553403-21553523 0.00095 76_[+1]_36 chr2R:20471210-20471330 0.00095 89_[+1]_23 chr2L:21853519-21853639 0.00095 62_[+1]_50 chr3R:29463761-29463881 0.00095 31_[+1]_81 chr2L:8510473-8510593 0.00095 28_[+1]_84 chrX:3843715-3843835 0.00095 3_[+1]_109 chr3R:13899949-13900069 0.00095 104_[+1]_8 chrX:7035031-7035151 0.00095 93_[+1]_19 chr2L:12080093-12080213 0.0011 84_[+1]_28 chrX:5551003-5551123 0.0011 9_[+1]_103 chr2L:3822663-3822783 0.0011 77_[+1]_35 chr2R:20959333-20959453 0.0011 63_[+1]_49 chr2R:21367521-21367641 0.0011 74_[+1]_38 chr2R:8638473-8638593 0.0011 48_[+1]_64 chr3L:14195439-14195559 0.0011 96_[+1]_16 chr2R:9405330-9405450 0.0011 4_[+1]_108 chr3L:8481100-8481220 0.0011 46_[+1]_66 chr2L:12666106-12666226 0.0011 11_[+1]_101 chrX:4207737-4207857 0.0011 81_[+1]_31 chr3R:21734612-21734732 0.0011 9_[+1]_103 chr2L:8872467-8872587 0.0011 52_[+1]_60 chr3R:25173728-25173848 0.0012 35_[+1]_77 chr3R:15640110-15640230 0.0012 77_[+1]_35 chr3L:4643927-4644047 0.0012 32_[+1]_80 chr3R:16390448-16390568 0.0012 68_[+1]_44 chr3R:4634654-4634774 0.0012 28_[+1]_84 chrX:7059120-7059240 0.0012 5_[+1]_107 chr3L:18307242-18307362 0.0014 6_[+1]_106 chr2R:11191697-11191817 0.0014 72_[+1]_40 chr3R:30041016-30041136 0.0014 1_[+1]_111 chr2L:14577314-14577434 0.0014 112_[+1] chr3R:8275140-8275260 0.0014 95_[+1]_17 chr3R:29771119-29771239 0.0014 67_[+1]_45 chr3L:11692992-11693112 0.0014 50_[+1]_62 chr2R:12530782-12530902 0.0015 63_[+1]_49 chr3R:12645910-12646030 0.0015 31_[+1]_81 chr2L:6543894-6544014 0.0015 66_[+1]_46 chr2L:15324574-15324694 0.0015 112_[+1] chr3L:13056883-13057003 0.0015 20_[+1]_92 chr3R:8203506-8203626 0.0015 64_[+1]_48 chr3L:5856566-5856686 0.0017 5_[+1]_107 chrX:4613757-4613877 0.0017 74_[+1]_38 chr3L:12603368-12603488 0.0017 74_[+1]_38 chr2L:3078344-3078464 0.0017 29_[+1]_83 chr3R:24846058-24846178 0.0017 7_[+1]_105 chr2L:9150230-9150350 0.0017 78_[+1]_34 chrX:417392-417512 0.0017 11_[+1]_101 chrX:20678374-20678494 0.0017 7_[+1]_105 chr3L:22783089-22783209 0.0017 91_[+1]_21 chr2R:14454005-14454125 0.0017 21_[+1]_91 chr2R:8654926-8655046 0.0019 68_[+1]_44 chr3R:4923016-4923136 0.0019 3_[+1]_109 chr2L:14773506-14773626 0.0019 44_[+1]_68 chr2R:21529146-21529266 0.0019 47_[+1]_65 chr3R:27931600-27931720 0.0019 75_[+1]_37 chr3L:16012429-16012549 0.0019 14_[+1]_98 chr2L:5890705-5890825 0.0021 95_[+1]_17 chr2L:16274165-16274285 0.0021 30_[+1]_82 chr2L:18334018-18334138 0.0021 21_[+1]_91 chr2R:11532536-11532656 0.0021 84_[+1]_28 chr3R:26015287-26015407 0.0021 84_[+1]_28 chr3L:14964948-14965068 0.0021 78_[+1]_34 chr2R:14983033-14983153 0.0021 57_[+1]_55 chr2R:12775848-12775968 0.0021 67_[+1]_45 chr2L:9146409-9146529 0.0021 33_[+1]_79 chr3L:12649170-12649290 0.0023 6_[+1]_106 chr2L:7296812-7296932 0.0023 60_[+1]_52 chr3L:14185233-14185353 0.0023 111_[+1]_1 chr3R:12123741-12123861 0.0023 58_[+1]_54 chr2R:20033599-20033719 0.0023 5_[+1]_107 chr2L:11071008-11071128 0.0025 12_[+1]_100 chr3L:16564305-16564425 0.0025 17_[+1]_95 chr2L:1508279-1508399 0.0025 33_[+1]_79 chr3R:21458614-21458734 0.0025 26_[+1]_86 chr3R:16506297-16506417 0.0025 2_[+1]_110 chr3R:12128725-12128845 0.0027 12_[+1]_100 chr3L:15703484-15703604 0.0027 21_[+1]_91 chr2L:1511008-1511128 0.0027 27_[+1]_85 chr2R:17753427-17753547 0.0029 15_[+1]_97 chr2R:9981087-9981207 0.0029 38_[+1]_74 chr3L:15756087-15756207 0.0032 33_[+1]_79 chr3R:25195122-25195242 0.0032 85_[+1]_27 chr3L:47774-47894 0.0032 31_[+1]_81 chr3R:16570828-16570948 0.0032 26_[+1]_86 chr3R:29459672-29459792 0.0032 25_[+1]_87 chr2R:9419908-9420028 0.0034 74_[+1]_38 chr3R:8965689-8965809 0.0034 51_[+1]_61 chr3L:8660939-8661059 0.0034 39_[+1]_73 chr3R:4847550-4847670 0.0034 69_[+1]_43 chr3R:21478142-21478262 0.0034 106_[+1]_6 chr2L:12466649-12466769 0.0037 39_[+1]_73 chr3R:30568469-30568589 0.0037 80_[+1]_32 chr3L:22181680-22181800 0.0037 30_[+1]_82 chr2R:16252115-16252235 0.0037 61_[+1]_51 chr3L:735466-735586 0.0039 19_[+1]_93 chr3L:12647439-12647559 0.0039 59_[+1]_53 chr2R:7592821-7592941 0.0041 50_[+1]_62 chr3R:21506441-21506561 0.0044 32_[+1]_80 chr3R:4270007-4270127 0.0045 74_[+1]_38 chr3L:14153735-14153855 0.0048 47_[+1]_65 chr2L:21339268-21339388 0.0048 37_[+1]_75 chr2R:25107764-25107884 0.0051 95_[+1]_17 chr3L:9037737-9037857 0.0054 70_[+1]_42 chr2L:8875954-8876074 0.0054 36_[+1]_76 chr3L:4408962-4409082 0.0054 13_[+1]_99 chr2L:15330780-15330900 0.0054 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NTAATTAV width=8 seqs=210 chr3R:14037479-14037599 ( 26) CTAATTAG 1 chr3R:15583568-15583688 ( 66) CTAATTAG 1 chr2R:20911166-20911286 ( 27) CTAATTAG 1 chr2L:3541186-3541306 ( 46) CTAATTAG 1 chr3L:6500609-6500729 ( 7) CTAATTAG 1 chr3L:9013884-9014004 ( 4) CTAATTAG 1 chr3L:19083283-19083403 ( 75) CTAATTAC 1 chr3R:4458436-4458556 ( 108) CTAATTAC 1 chr3R:16554399-16554519 ( 112) GTAATTAG 1 chr3R:4340322-4340442 ( 15) TTAATTAG 1 chr2R:10077298-10077418 ( 29) GTAATTAG 1 chr3L:6068316-6068436 ( 65) TTAATTAG 1 chr3L:8687691-8687811 ( 29) GTAATTAG 1 chr3R:19839064-19839184 ( 88) TTAATTAG 1 chr2R:7947879-7947999 ( 73) TTAATTAC 1 chr3R:16829302-16829422 ( 42) TTAATTAC 1 chr2R:6557957-6558077 ( 37) TTAATTAC 1 chr2R:15904408-15904528 ( 12) TTAATTAC 1 chr3R:24726452-24726572 ( 31) TTAATTAC 1 chr2L:11756791-11756911 ( 51) TTAATTAC 1 chr3R:27445450-27445570 ( 3) TTAATTAC 1 chr2L:6241206-6241326 ( 24) ATAATTAG 1 chr2L:4823901-4824021 ( 68) ATAATTAG 1 chr3R:22223519-22223639 ( 41) ATAATTAG 1 chrX:2436507-2436627 ( 64) ATAATTAG 1 chr2R:24808749-24808869 ( 56) ATAATTAG 1 chr3L:17555915-17556035 ( 80) ATAATTAC 1 chr3L:25676960-25677080 ( 46) CTAATTAA 1 chr3L:17416652-17416772 ( 54) CTAATGAG 1 chr3L:18218640-18218760 ( 92) CCAATTAG 1 chr3R:8151199-8151319 ( 113) TTAATTAA 1 chr3R:7035820-7035940 ( 37) GTAATTAA 1 chrX:2982551-2982671 ( 22) CTAATGAG 1 chrX:15684531-15684651 ( 26) CTAATGAG 1 chr2L:14439767-14439887 ( 6) GTAATTAA 1 chr3L:9017553-9017673 ( 77) CTAATGAG 1 chr2R:14291303-14291423 ( 98) CTAATGAC 1 chr2L:20768486-20768606 ( 19) CTAATGAC 1 chr3R:10222529-10222649 ( 32) CTAATGAC 1 chr3L:1480927-1481047 ( 75) CTAATTAT 1 chr3R:4858176-4858296 ( 77) CTAATGAC 1 chr2L:9602188-9602308 ( 51) CTAATGAC 1 chr2L:5238038-5238158 ( 18) CTAATTAT 1 chr3R:15654977-15655097 ( 51) CTAATGAC 1 chr3L:9002699-9002819 ( 44) CTAATGAC 1 chr2R:12455137-12455257 ( 83) GCAATTAG 1 chr2L:4282266-4282386 ( 67) ATAATTAA 1 chr3L:10105922-10106042 ( 69) TCAATTAG 1 chr3R:4875356-4875476 ( 73) GCAATTAG 1 chr3L:1410486-1410606 ( 16) GCAATTAG 1 chr2L:6373280-6373400 ( 56) ATAATTAA 1 chr2L:11075225-11075345 ( 20) GCAATTAG 1 chrX:9789848-9789968 ( 12) GCAATTAG 1 chr2R:19662017-19662137 ( 67) GCAATTAG 1 chr3R:16570623-16570743 ( 29) GCAATTAG 1 chr2L:4281331-4281451 ( 72) GCAATTAG 1 chrX:19849378-19849498 ( 53) GCAATTAG 1 chr3L:2385976-2386096 ( 85) TCAATTAG 1 chr3R:13879501-13879621 ( 67) TCAATTAG 1 chr2L:22151589-22151709 ( 98) GTAATGAG 1 chr3L:1471176-1471296 ( 44) TCAATTAG 1 chr3L:16772894-16773014 ( 52) TCAATTAG 1 chr2R:9700160-9700280 ( 36) TCAATTAG 1 chr3L:5983063-5983183 ( 64) TTAATGAC 1 chrX:17322262-17322382 ( 61) TTAATGAC 1 chr3R:18072265-18072385 ( 67) TTAATTAT 1 chr2R:15033030-15033150 ( 64) TTAATGAC 1 chr3L:12465383-12465503 ( 53) GTAATGAC 1 chr3R:8841408-8841528 ( 26) TTAATGAC 1 chr3R:30856454-30856574 ( 11) GCAATTAC 1 chr2R:15034211-15034331 ( 73) GTAATGAC 1 chr2L:18135627-18135747 ( 30) GCAATTAC 1 chr2R:17803361-17803481 ( 57) GTAATTAT 1 chr3R:13731136-13731256 ( 24) TTAATTAT 1 chr3R:5118835-5118955 ( 38) TTAATGAC 1 chr3L:15508872-15508992 ( 51) TTAATTAT 1 chrX:19786982-19787102 ( 56) TTAATGAC 1 chr3R:5211540-5211660 ( 65) GTAATGAC 1 chr2L:1958542-1958662 ( 48) ACAATTAG 1 chr2L:15742832-15742952 ( 60) CTAATGAA 1 chr2L:11794057-11794177 ( 25) CTAATGAA 1 chr3L:10966754-10966874 ( 98) CCAATTAA 1 chr3R:30866008-30866128 ( 32) ATAATGAC 1 chr2R:15002749-15002869 ( 17) CTAATGAA 1 chr2R:20056869-20056989 ( 34) CTAATTGC 1 chr2R:19979101-19979221 ( 17) CTAATTGC 1 chr3R:16526395-16526515 ( 42) CTAATTGC 1 chr3R:15649064-15649184 ( 66) CTAATTGC 1 chr3R:19332191-19332311 ( 1) CTAATTGC 1 chr2L:89297-89417 ( 42) CTAATTGC 1 chr3L:1772728-1772848 ( 93) GCAATTAA 1 chrX:8216278-8216398 ( 83) GCAATTAA 1 chr2R:19840779-19840899 ( 99) GCAATTAA 1 chr3L:8497541-8497661 ( 107) TTAATGAA 1 chr3R:21825880-21826000 ( 76) GCAATTAA 1 chr3R:12382689-12382809 ( 66) GCAATTAA 1 chr3R:29307209-29307329 ( 74) GCAATTAA 1 chr3L:8826177-8826297 ( 50) TTAATGAA 1 chrX:3841797-3841917 ( 90) TTAATTGC 1 chr3L:9012339-9012459 ( 36) TTAATTGC 1 chrX:17177717-17177837 ( 13) CTAATGAT 1 chr3L:2408084-2408204 ( 7) CTAATGAT 1 chr3L:15039649-15039769 ( 23) CTAATGAT 1 chr2L:19341546-19341666 ( 110) CTAATGAT 1 chr2R:21553403-21553523 ( 77) CAAATTAG 1 chr2R:20471210-20471330 ( 90) ACAATTAA 1 chr2L:21853519-21853639 ( 63) CAAATTAG 1 chr3R:29463761-29463881 ( 32) ACAATTAA 1 chr2L:8510473-8510593 ( 29) CTCATTAG 1 chrX:3843715-3843835 ( 4) CTCATTAG 1 chr3R:13899949-13900069 ( 105) CTCATTAG 1 chrX:7035031-7035151 ( 94) CTCATTAG 1 chr2L:12080093-12080213 ( 85) TTAATGAT 1 chrX:5551003-5551123 ( 10) CAAATTAC 1 chr2L:3822663-3822783 ( 78) TCAATTAT 1 chr2R:20959333-20959453 ( 64) CAAATTAC 1 chr2R:21367521-21367641 ( 75) TTAATGAT 1 chr2R:8638473-8638593 ( 49) ATAATTGC 1 chr3L:14195439-14195559 ( 97) CTAATTGA 1 chr2R:9405330-9405450 ( 5) TTAATGAT 1 chr3L:8481100-8481220 ( 47) TTAATGAT 1 chr2L:12666106-12666226 ( 12) TTAATGAT 1 chrX:4207737-4207857 ( 82) GCAATTAT 1 chr3R:21734612-21734732 ( 10) GCAATTAT 1 chr2L:8872467-8872587 ( 53) CTAATTGA 1 chr3R:25173728-25173848 ( 36) ACAATGAG 1 chr3R:15640110-15640230 ( 78) TTCATTAG 1 chr3L:4643927-4644047 ( 33) TAAATTAG 1 chr3R:16390448-16390568 ( 69) GAAATTAG 1 chr3R:4634654-4634774 ( 29) GTCATTAG 1 chrX:7059120-7059240 ( 6) GTCATTAG 1 chr3L:18307242-18307362 ( 7) ACAATTAT 1 chr2R:11191697-11191817 ( 73) ATAATGAT 1 chr3R:30041016-30041136 ( 2) ACAATTAT 1 chr2L:14577314-14577434 ( 113) ATAATGAT 1 chr3R:8275140-8275260 ( 96) ACAATGAC 1 chr3R:29771119-29771239 ( 68) CTAATGGG 1 chr3L:11692992-11693112 ( 51) GTCATTAC 1 chr2R:12530782-12530902 ( 64) ATCATTAG 1 chr3R:12645910-12646030 ( 32) CTAATGGC 1 chr2L:6543894-6544014 ( 67) ATCATTAG 1 chr2L:15324574-15324694 ( 113) CTAATGGC 1 chr3L:13056883-13057003 ( 21) ATCATTAG 1 chr3R:8203506-8203626 ( 65) ATCATTAG 1 chr3L:5856566-5856686 ( 6) ATAATTGA 1 chrX:4613757-4613877 ( 75) TCAATTGG 1 chr3L:12603368-12603488 ( 75) ATAATTGA 1 chr2L:3078344-3078464 ( 30) CAAATTAA 1 chr3R:24846058-24846178 ( 8) CTCATTAA 1 chr2L:9150230-9150350 ( 79) GCAATTGG 1 chrX:417392-417512 ( 12) AAAATTAC 1 chrX:20678374-20678494 ( 8) ATAATTGA 1 chr3L:22783089-22783209 ( 92) GCAATGAA 1 chr2R:14454005-14454125 ( 22) ATCATTAC 1 chr2R:8654926-8655046 ( 69) GTAATTTG 1 chr3R:4923016-4923136 ( 4) TTAATGGC 1 chr2L:14773506-14773626 ( 45) GTAATTTG 1 chr2R:21529146-21529266 ( 48) GTAATTTG 1 chr3R:27931600-27931720 ( 76) TTAATTGT 1 chr3L:16012429-16012549 ( 15) TTAATGGC 1 chr2L:5890705-5890825 ( 96) TTAATTTC 1 chr2L:16274165-16274285 ( 31) GTCATTAA 1 chr2L:18334018-18334138 ( 22) TTCATTAA 1 chr2R:11532536-11532656 ( 85) CAAATGAG 1 chr3R:26015287-26015407 ( 85) ACAATGAA 1 chr3L:14964948-14965068 ( 79) ACAATGAA 1 chr2R:14983033-14983153 ( 58) GTCATTAA 1 chr2R:12775848-12775968 ( 68) ACAATGAA 1 chr2L:9146409-9146529 ( 34) TTCATTAA 1 chr3L:12649170-12649290 ( 7) ATAATTGT 1 chr2L:7296812-7296932 ( 61) ACAATTGC 1 chr3L:14185233-14185353 ( 112) CAAATGAC 1 chr3R:12123741-12123861 ( 59) ACAATTGC 1 chr2R:20033599-20033719 ( 6) ATAATTTG 1 chr2L:11071008-11071128 ( 13) GCCATTAG 1 chr3L:16564305-16564425 ( 18) GAAATGAG 1 chr2L:1508279-1508399 ( 34) TAAATGAG 1 chr3R:21458614-21458734 ( 27) TCCATTAG 1 chr3R:16506297-16506417 ( 3) TAAATGAG 1 chr3R:12128725-12128845 ( 13) GCCATTAC 1 chr3L:15703484-15703604 ( 22) GTCATGAC 1 chr2L:1511008-1511128 ( 28) GCCATTAC 1 chr2R:17753427-17753547 ( 16) GTAATTTA 1 chr2R:9981087-9981207 ( 39) CCAATGGC 1 chr3L:15756087-15756207 ( 34) CAAATTGG 1 chr3R:25195122-25195242 ( 86) CTAATTTT 1 chr3L:47774-47894 ( 32) CAAATGAA 1 chr3R:16570828-16570948 ( 27) ACCATTAC 1 chr3R:29459672-29459792 ( 26) ATAATGGA 1 chr2R:9419908-9420028 ( 75) GCAATTGT 1 chr3R:8965689-8965809 ( 52) CAAATTGC 1 chr3L:8660939-8661059 ( 40) TTAATGTG 1 chr3R:4847550-4847670 ( 70) GCAATTTG 1 chr3R:21478142-21478262 ( 107) CAAATTGC 1 chr2L:12466649-12466769 ( 40) GCCATTAA 1 chr3R:30568469-30568589 ( 81) GTAATTTT 1 chr3L:22181680-22181800 ( 31) TAAATTGG 1 chr2R:16252115-16252235 ( 62) TCAATTTC 1 chr3L:735466-735586 ( 20) ACAATGGC 1 chr3L:12647439-12647559 ( 60) GTCATTGC 1 chr2R:7592821-7592941 ( 51) ACCATTAA 1 chr3R:21506441-21506561 ( 33) CAAATTGA 1 chr3R:4270007-4270127 ( 75) GCAATTTA 1 chr3L:14153735-14153855 ( 48) ACAATGGA 1 chr2L:21339268-21339388 ( 38) CAAATGGG 1 chr2R:25107764-25107884 ( 96) AACATTAG 1 chr3L:9037737-9037857 ( 71) TTAATGTT 1 chr2L:8875954-8876074 ( 37) TTAATGTT 1 chr3L:4408962-4409082 ( 14) GCAATTTT 1 chr2L:15330780-15330900 ( 88) GTCATGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.60464 E= 6.7e-014 -40 31 6 -3 -136 22 -1436 127 175 -78 -1436 -1436 196 -1436 -1436 -1436 -1436 -1436 -1436 195 -1436 -1436 32 142 154 -1436 -45 -185 -33 31 53 -85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 210 E= 6.7e-014 0.195238 0.295238 0.257143 0.252381 0.100000 0.276190 0.000000 0.623810 0.861905 0.138095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.309524 0.690476 0.747619 0.000000 0.180952 0.071429 0.204762 0.295238 0.357143 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTAATTAV MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][TC]AAT[TG]A[GCA] -------------------------------------------------------------------------------- Time 8.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCYGCTG MEME-2 width = 8 sites = 39 llr = 334 E-value = 3.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :7a5:a1: probability G 13:1a::a matrix T 7::4::9: bits 2.1 * ** * 1.9 * ** * 1.7 * ** * 1.5 * **** Relative 1.2 ** **** Entropy 1.0 ** **** (12.4 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCCGCTG consensus AG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1410486-1410606 63 1.31e-05 TCGCTGCCAC TCCCGCTG CGCCCGTCAT chr3R:13989047-13989167 47 1.31e-05 CATACATATA TCCCGCTG CTAACCGCAA chr2L:18334018-18334138 55 1.31e-05 CATTAACACG TCCCGCTG GGAGTTTTCA chr2L:3541186-3541306 20 1.31e-05 CGTCTGGACC TCCCGCTG CGCTCCATCA chr3R:4858176-4858296 2 1.31e-05 C TCCCGCTG GCCGAGCAAC chr3R:4847550-4847670 55 1.31e-05 CTGACCTTTC TCCCGCTG CGAGGATGCA chr2L:12666106-12666226 71 1.31e-05 AGTCAGGATG TCCCGCTG CGAGGATGCA chr3L:8826177-8826297 21 1.31e-05 ACCATGAAGT TCCCGCTG CCCTGGCTAT chr3L:16772894-16773014 84 1.31e-05 GCTACTGCAA TCCCGCTG CGAGCGGCGT chr3R:4340322-4340442 98 2.74e-05 GGGCCCGATG TCCTGCTG GGTAACTCTC chr2L:3549847-3549967 22 2.74e-05 ATCCGCCGCT TCCTGCTG CTGCTTATGG chr3R:22223519-22223639 57 2.74e-05 AGGTGTAGAG TCCTGCTG CCAGACTCGT chr3R:12123741-12123861 27 2.74e-05 CTGATAGACC TCCTGCTG TGGAAATGCG chr2R:20033599-20033719 69 2.74e-05 AGGTGCCAGA TCCTGCTG CGTTTGTTTC chr3R:13899949-13900069 68 4.11e-05 GCCACTTGAC TGCCGCTG GTCCTGCGGC chr3L:4643927-4644047 45 6.90e-05 AATTAGGGCT TGCTGCTG TGGTTTGTTT chr3L:10966754-10966874 78 6.90e-05 ACCTGTTGTC ACCCGCTG TGCGTGGGAA chr3R:18991054-18991174 7 6.90e-05 CCCGTT TGCTGCTG GTTTCATAAT chr3R:26015287-26015407 19 6.90e-05 CCGGCGCCCA ACCCGCTG AGCTCTTCCG chr2R:9405330-9405450 29 6.90e-05 CTGCTTCTGA TGCTGCTG GGAAAGTTGC chr2L:15323344-15323464 52 6.90e-05 GGAGAAGACA ACCCGCTG AGTTGGGCAT chr3L:2385976-2386096 103 6.90e-05 CTTAtgttgc tgctgctg cggctgctgT chr3R:13731136-13731256 53 6.90e-05 ctgctactgc tgctgctg cATTGACAGC chr3R:15654977-15655097 102 6.90e-05 TTTCCCAGGT ACCCGCTG GCGGTCAAGG chr2R:14454005-14454125 82 8.32e-05 GATCACTTCT ACCTGCTG ACTGCACCGA chr2L:12466649-12466769 15 9.69e-05 ATTTAAATTG TCCGGCTG CTGCAGTTTC chr2L:1508279-1508399 58 9.69e-05 CCGCCGCCTG TCCGGCTG ACAGGACCTC chr3R:25173134-25173254 69 1.09e-04 TAGGAGACAA TCCCGCCG TTGCCAGGAA chrX:4207737-4207857 68 1.09e-04 TATGCCCATT TCCCGCCG AGAACTGCAA chr3R:28320783-28320903 62 1.35e-04 TTGCCCAGGG AGCCGCTG CGAATGCGCA chr3R:7035820-7035940 9 1.35e-04 AGCTCACC GCCCGCTG AAAGGGCTCA chr2R:5677808-5677928 52 1.35e-04 CGGACGCTAG AGCCGCTG CCACAGGCAA chr2L:3818217-3818337 11 1.48e-04 GGCAGGCGCA TCCTGCCG CGTGGATACC chr3L:15703484-15703604 31 1.48e-04 AGTCATGACA TCCTGCCG GGCAACTAGA chr2L:8875954-8876074 74 1.77e-04 TCCTTGGGCT GCCTGCTG CTTCTGCCTC chr3L:14989989-14990109 55 1.77e-04 GAAGCTGTTC AGCTGCTG GCGGCTGCCA chr3R:27445450-27445570 27 1.77e-04 CGTGCCATCT GCCTGCTG CACAAACTGG chr2L:15742832-15742952 43 1.91e-04 ACACGCAGGC TGCGGCTG CAACTTCCTC chr2L:6373280-6373400 103 1.91e-04 ATCCGACAGC TGCGGCTG TTAATCTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1410486-1410606 1.3e-05 62_[+2]_50 chr3R:13989047-13989167 1.3e-05 46_[+2]_66 chr2L:18334018-18334138 1.3e-05 54_[+2]_58 chr2L:3541186-3541306 1.3e-05 19_[+2]_93 chr3R:4858176-4858296 1.3e-05 1_[+2]_111 chr3R:4847550-4847670 1.3e-05 54_[+2]_58 chr2L:12666106-12666226 1.3e-05 70_[+2]_42 chr3L:8826177-8826297 1.3e-05 20_[+2]_92 chr3L:16772894-16773014 1.3e-05 83_[+2]_29 chr3R:4340322-4340442 2.7e-05 97_[+2]_15 chr2L:3549847-3549967 2.7e-05 21_[+2]_91 chr3R:22223519-22223639 2.7e-05 56_[+2]_56 chr3R:12123741-12123861 2.7e-05 26_[+2]_86 chr2R:20033599-20033719 2.7e-05 68_[+2]_44 chr3R:13899949-13900069 4.1e-05 67_[+2]_45 chr3L:4643927-4644047 6.9e-05 44_[+2]_68 chr3L:10966754-10966874 6.9e-05 77_[+2]_35 chr3R:18991054-18991174 6.9e-05 6_[+2]_106 chr3R:26015287-26015407 6.9e-05 18_[+2]_94 chr2R:9405330-9405450 6.9e-05 28_[+2]_84 chr2L:15323344-15323464 6.9e-05 51_[+2]_61 chr3L:2385976-2386096 6.9e-05 102_[+2]_10 chr3R:13731136-13731256 6.9e-05 52_[+2]_60 chr3R:15654977-15655097 6.9e-05 101_[+2]_11 chr2R:14454005-14454125 8.3e-05 81_[+2]_31 chr2L:12466649-12466769 9.7e-05 14_[+2]_98 chr2L:1508279-1508399 9.7e-05 57_[+2]_55 chr3R:25173134-25173254 0.00011 68_[+2]_44 chrX:4207737-4207857 0.00011 67_[+2]_45 chr3R:28320783-28320903 0.00014 61_[+2]_51 chr3R:7035820-7035940 0.00014 8_[+2]_104 chr2R:5677808-5677928 0.00014 51_[+2]_61 chr2L:3818217-3818337 0.00015 10_[+2]_102 chr3L:15703484-15703604 0.00015 30_[+2]_82 chr2L:8875954-8876074 0.00018 73_[+2]_39 chr3L:14989989-14990109 0.00018 54_[+2]_58 chr3R:27445450-27445570 0.00018 26_[+2]_86 chr2L:15742832-15742952 0.00019 42_[+2]_70 chr2L:6373280-6373400 0.00019 102_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCYGCTG width=8 seqs=39 chr3L:1410486-1410606 ( 63) TCCCGCTG 1 chr3R:13989047-13989167 ( 47) TCCCGCTG 1 chr2L:18334018-18334138 ( 55) TCCCGCTG 1 chr2L:3541186-3541306 ( 20) TCCCGCTG 1 chr3R:4858176-4858296 ( 2) TCCCGCTG 1 chr3R:4847550-4847670 ( 55) TCCCGCTG 1 chr2L:12666106-12666226 ( 71) TCCCGCTG 1 chr3L:8826177-8826297 ( 21) TCCCGCTG 1 chr3L:16772894-16773014 ( 84) TCCCGCTG 1 chr3R:4340322-4340442 ( 98) TCCTGCTG 1 chr2L:3549847-3549967 ( 22) TCCTGCTG 1 chr3R:22223519-22223639 ( 57) TCCTGCTG 1 chr3R:12123741-12123861 ( 27) TCCTGCTG 1 chr2R:20033599-20033719 ( 69) TCCTGCTG 1 chr3R:13899949-13900069 ( 68) TGCCGCTG 1 chr3L:4643927-4644047 ( 45) TGCTGCTG 1 chr3L:10966754-10966874 ( 78) ACCCGCTG 1 chr3R:18991054-18991174 ( 7) TGCTGCTG 1 chr3R:26015287-26015407 ( 19) ACCCGCTG 1 chr2R:9405330-9405450 ( 29) TGCTGCTG 1 chr2L:15323344-15323464 ( 52) ACCCGCTG 1 chr3L:2385976-2386096 ( 103) TGCTGCTG 1 chr3R:13731136-13731256 ( 53) TGCTGCTG 1 chr3R:15654977-15655097 ( 102) ACCCGCTG 1 chr2R:14454005-14454125 ( 82) ACCTGCTG 1 chr2L:12466649-12466769 ( 15) TCCGGCTG 1 chr2L:1508279-1508399 ( 58) TCCGGCTG 1 chr3R:25173134-25173254 ( 69) TCCCGCCG 1 chrX:4207737-4207857 ( 68) TCCCGCCG 1 chr3R:28320783-28320903 ( 62) AGCCGCTG 1 chr3R:7035820-7035940 ( 9) GCCCGCTG 1 chr2R:5677808-5677928 ( 52) AGCCGCTG 1 chr2L:3818217-3818337 ( 11) TCCTGCCG 1 chr3L:15703484-15703604 ( 31) TCCTGCCG 1 chr2L:8875954-8876074 ( 74) GCCTGCTG 1 chr3L:14989989-14990109 ( 55) AGCTGCTG 1 chr3R:27445450-27445570 ( 27) GCCTGCTG 1 chr2L:15742832-15742952 ( 43) TGCGGCTG 1 chr2L:6373280-6373400 ( 103) TGCGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 3.4e-003 -32 -1193 -169 148 -1193 159 19 -1193 -1193 207 -1193 -1193 -1193 103 -127 67 -1193 -1193 201 -1193 -1193 207 -1193 -1193 -1193 -121 -1193 180 -1193 -1193 201 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 3.4e-003 0.205128 0.000000 0.076923 0.717949 0.000000 0.717949 0.282051 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.487179 0.102564 0.410256 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.102564 0.000000 0.897436 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCYGCTG MEME-2 regular expression -------------------------------------------------------------------------------- [TA][CG]C[CT]GCTG -------------------------------------------------------------------------------- Time 14.82 secs. ******************************************************************************** ******************************************************************************** MOTIF SCAGCRGG MEME-3 width = 8 sites = 26 llr = 247 E-value = 2.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::6:: pos.-specific C 3a::a::: probability G 5::a:4aa matrix T 2::::::: bits 2.1 * ** ** 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.2 **** ** Entropy 1.0 ******* (13.7 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7155669-7155789 4 1.42e-05 GCA GCAGCAGG AAGCAAACAA chr3R:29559716-29559836 4 1.42e-05 AGC GCAGCAGG TTGCTGTCTT chr3R:12123741-12123861 82 1.42e-05 ACTATGGAGA GCAGCAGG TAGGCGTGTA chr2L:12899416-12899536 48 1.42e-05 agcagaagca gcagcagg agcagcagca chr2L:18135627-18135747 66 1.42e-05 GCAGGAAGTC GCAGCAGG CATCTCGCAC chr3L:6068316-6068436 102 1.42e-05 TTGCGACAAC GCAGCAGG TAGTAGCAGC chr2L:12666106-12666226 93 1.42e-05 GATGCAAAAG GCAGCAGG ATCGGCTTAC chr2L:9146409-9146529 10 1.42e-05 TTAAGAACT GCAGCAGG TGCTAGGCGA chr3R:16506297-16506417 106 1.42e-05 GGGAGCAGAA GCAGCAGG ACGAAGC chr3R:19839064-19839184 61 1.42e-05 ggcagcagca gcagcagG ACATTTTCGG chrX:20717358-20717478 47 2.78e-05 CGCGACTGAC GCAGCGGG ACTTGCGCAG chr2L:6241206-6241326 113 2.78e-05 GGTTCTTGGC GCAGCGGG chr2R:15034211-15034331 104 2.78e-05 TATGCAAGTT GCAGCGGG CCGGGTCTC chr3R:4270007-4270127 104 2.78e-05 TCACCAACGT GCAGCGGG GTCCGGCCG chr3R:8151199-8151319 54 4.14e-05 AGGATATTGC CCAGCAGG TCACAAAGGA chr2R:15033030-15033150 99 4.14e-05 TACAAAGCAG CCAGCAGG CCATCTAGGC chr3R:21478142-21478262 47 4.14e-05 AGAGCGAAGC CCAGCAGG TAACTCAGTA chr3L:12649170-12649290 95 5.45e-05 GGCACCGTCG CCAGCGGG GGCTATATAT chr3R:31852331-31852451 55 5.45e-05 CGAATCCCAG CCAGCGGG GTGCTTTGTC chr3R:21506441-21506561 45 5.45e-05 AATTGATTTC CCAGCGGG AGGGGTCGTA chr3R:27445450-27445570 71 5.45e-05 TGTGTGTCCA CCAGCGGG AGTTCCATCC chrX:11989021-11989141 46 6.92e-05 GTAGTGACCC TCAGCAGG CAGGCTGGTC chr3L:5983063-5983183 20 6.92e-05 TAGCTTCGAA TCAGCAGG AGCACGGAAC chr3R:25173728-25173848 62 8.34e-05 TCATCAGCTA TCAGCGGG GCGAACCGAA chr3R:13879501-13879621 22 8.34e-05 GGAAGACGGA TCAGCGGG ATATATGTTC chr2R:24808749-24808869 98 8.34e-05 TGCCGTCCAG TCAGCGGG GGTGTTCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7155669-7155789 1.4e-05 3_[+3]_109 chr3R:29559716-29559836 1.4e-05 3_[+3]_109 chr3R:12123741-12123861 1.4e-05 81_[+3]_31 chr2L:12899416-12899536 1.4e-05 47_[+3]_65 chr2L:18135627-18135747 1.4e-05 65_[+3]_47 chr3L:6068316-6068436 1.4e-05 101_[+3]_11 chr2L:12666106-12666226 1.4e-05 92_[+3]_20 chr2L:9146409-9146529 1.4e-05 9_[+3]_103 chr3R:16506297-16506417 1.4e-05 105_[+3]_7 chr3R:19839064-19839184 1.4e-05 60_[+3]_52 chrX:20717358-20717478 2.8e-05 46_[+3]_66 chr2L:6241206-6241326 2.8e-05 112_[+3] chr2R:15034211-15034331 2.8e-05 103_[+3]_9 chr3R:4270007-4270127 2.8e-05 103_[+3]_9 chr3R:8151199-8151319 4.1e-05 53_[+3]_59 chr2R:15033030-15033150 4.1e-05 98_[+3]_14 chr3R:21478142-21478262 4.1e-05 46_[+3]_66 chr3L:12649170-12649290 5.4e-05 94_[+3]_18 chr3R:31852331-31852451 5.4e-05 54_[+3]_58 chr3R:21506441-21506561 5.4e-05 44_[+3]_68 chr3R:27445450-27445570 5.4e-05 70_[+3]_42 chrX:11989021-11989141 6.9e-05 45_[+3]_67 chr3L:5983063-5983183 6.9e-05 19_[+3]_93 chr3R:25173728-25173848 8.3e-05 61_[+3]_51 chr3R:13879501-13879621 8.3e-05 21_[+3]_91 chr2R:24808749-24808869 8.3e-05 97_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCAGCRGG width=8 seqs=26 chr3R:7155669-7155789 ( 4) GCAGCAGG 1 chr3R:29559716-29559836 ( 4) GCAGCAGG 1 chr3R:12123741-12123861 ( 82) GCAGCAGG 1 chr2L:12899416-12899536 ( 48) GCAGCAGG 1 chr2L:18135627-18135747 ( 66) GCAGCAGG 1 chr3L:6068316-6068436 ( 102) GCAGCAGG 1 chr2L:12666106-12666226 ( 93) GCAGCAGG 1 chr2L:9146409-9146529 ( 10) GCAGCAGG 1 chr3R:16506297-16506417 ( 106) GCAGCAGG 1 chr3R:19839064-19839184 ( 61) GCAGCAGG 1 chrX:20717358-20717478 ( 47) GCAGCGGG 1 chr2L:6241206-6241326 ( 113) GCAGCGGG 1 chr2R:15034211-15034331 ( 104) GCAGCGGG 1 chr3R:4270007-4270127 ( 104) GCAGCGGG 1 chr3R:8151199-8151319 ( 54) CCAGCAGG 1 chr2R:15033030-15033150 ( 99) CCAGCAGG 1 chr3R:21478142-21478262 ( 47) CCAGCAGG 1 chr3L:12649170-12649290 ( 95) CCAGCGGG 1 chr3R:31852331-31852451 ( 55) CCAGCGGG 1 chr3R:21506441-21506561 ( 45) CCAGCGGG 1 chr3R:27445450-27445570 ( 71) CCAGCGGG 1 chrX:11989021-11989141 ( 46) TCAGCAGG 1 chr3L:5983063-5983183 ( 20) TCAGCAGG 1 chr3R:25173728-25173848 ( 62) TCAGCGGG 1 chr3R:13879501-13879621 ( 22) TCAGCGGG 1 chr2R:24808749-24808869 ( 98) TCAGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 2.3e-004 -1134 18 112 -42 -1134 207 -1134 -1134 196 -1134 -1134 -1134 -1134 -1134 201 -1134 -1134 207 -1134 -1134 117 -1134 77 -1134 -1134 -1134 201 -1134 -1134 -1134 201 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.3e-004 0.000000 0.269231 0.538462 0.192308 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.576923 0.000000 0.423077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAGCRGG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]CAGC[AG]GG -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** MOTIF KCTACCTG MEME-4 width = 8 sites = 16 llr = 160 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :8::aa:: probability G 4::::::a matrix T 62a:::a: bits 2.1 ** * 1.9 ****** 1.7 ****** 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTACCTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25195122-25195242 49 1.48e-05 CTGGACGCGG TCTACCTG GCCGCCGTCT chr3R:10222529-10222649 112 1.48e-05 CTTCTCCTCG TCTACCTG C chr3L:2438518-2438638 62 1.48e-05 ATGCAGCCTG TCTACCTG ACCAAAAACC chr3R:12128725-12128845 86 1.48e-05 TTGGTGTTAA TCTACCTG GTTGAACTGC chr3L:11692992-11693112 99 1.48e-05 TCACACTTTG TCTACCTG TAGGAGTATA chr2L:8872467-8872587 18 1.48e-05 ACCCTCTAAC TCTACCTG TTTACTGAGG chr3L:1471176-1471296 66 1.48e-05 CGGAGTTGCA TCTACCTG ATTTGACGAG chr3R:7035820-7035940 99 2.89e-05 GCCGGAACCG GCTACCTG GCTAAATTAA chr3L:10966754-10966874 65 2.89e-05 TCTGCCGAGG GCTACCTG TTGTCACCCG chr3R:4458436-4458556 44 2.89e-05 CTTAACATTC GCTACCTG AAGGCCTCCT chr3R:29771119-29771239 50 2.89e-05 AAACATTTCG GCTACCTG GACACCTCAC chr2L:22151589-22151709 46 2.89e-05 CCCGTTATTT GCTACCTG TTACAAAACA chr2R:25107764-25107884 35 2.89e-05 GGCCCGCGTC GCTACCTG GGCGTTCGTT chr2R:12455137-12455257 12 4.49e-05 CGATGCGATC TTTACCTG AACTCCGACC chr2R:21193033-21193153 59 4.49e-05 GCCTGGGAAT TTTACCTG TTGATAAGAA chr2L:5238038-5238158 53 4.49e-05 TTCCCATTCT TTTACCTG TGGAAATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25195122-25195242 1.5e-05 48_[+4]_64 chr3R:10222529-10222649 1.5e-05 111_[+4]_1 chr3L:2438518-2438638 1.5e-05 61_[+4]_51 chr3R:12128725-12128845 1.5e-05 85_[+4]_27 chr3L:11692992-11693112 1.5e-05 98_[+4]_14 chr2L:8872467-8872587 1.5e-05 17_[+4]_95 chr3L:1471176-1471296 1.5e-05 65_[+4]_47 chr3R:7035820-7035940 2.9e-05 98_[+4]_14 chr3L:10966754-10966874 2.9e-05 64_[+4]_48 chr3R:4458436-4458556 2.9e-05 43_[+4]_69 chr3R:29771119-29771239 2.9e-05 49_[+4]_63 chr2L:22151589-22151709 2.9e-05 45_[+4]_67 chr2R:25107764-25107884 2.9e-05 34_[+4]_78 chr2R:12455137-12455257 4.5e-05 11_[+4]_101 chr2R:21193033-21193153 4.5e-05 58_[+4]_54 chr2L:5238038-5238158 4.5e-05 52_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCTACCTG width=8 seqs=16 chr3R:25195122-25195242 ( 49) TCTACCTG 1 chr3R:10222529-10222649 ( 112) TCTACCTG 1 chr3L:2438518-2438638 ( 62) TCTACCTG 1 chr3R:12128725-12128845 ( 86) TCTACCTG 1 chr3L:11692992-11693112 ( 99) TCTACCTG 1 chr2L:8872467-8872587 ( 18) TCTACCTG 1 chr3L:1471176-1471296 ( 66) TCTACCTG 1 chr3R:7035820-7035940 ( 99) GCTACCTG 1 chr3L:10966754-10966874 ( 65) GCTACCTG 1 chr3R:4458436-4458556 ( 44) GCTACCTG 1 chr3R:29771119-29771239 ( 50) GCTACCTG 1 chr2L:22151589-22151709 ( 46) GCTACCTG 1 chr2R:25107764-25107884 ( 35) GCTACCTG 1 chr2R:12455137-12455257 ( 12) TTTACCTG 1 chr2R:21193033-21193153 ( 59) TTTACCTG 1 chr2L:5238038-5238158 ( 53) TTTACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 4.3e+002 -1064 -1064 60 128 -1064 177 -1064 -46 -1064 -1064 -1064 195 196 -1064 -1064 -1064 -1064 207 -1064 -1064 -1064 207 -1064 -1064 -1064 -1064 -1064 195 -1064 -1064 201 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.3e+002 0.000000 0.000000 0.375000 0.625000 0.000000 0.812500 0.000000 0.187500 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCTACCTG MEME-4 regular expression -------------------------------------------------------------------------------- [TG]CTACCTG -------------------------------------------------------------------------------- Time 26.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTTTTTG MEME-5 width = 8 sites = 13 llr = 135 E-value = 5.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:::::: probability G :::::::7 matrix T ::aaaaa3 bits 2.1 ** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTTTTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17555915-17556035 111 1.61e-05 GAAAATACTG CCTTTTTG CT chr3R:14477982-14478102 71 1.61e-05 AGAGTTATTG CCTTTTTG CCTTTTTCTT chr2L:20768486-20768606 4 1.61e-05 TAG CCTTTTTG TGCGCCCCTA chr2R:21553403-21553523 85 1.61e-05 TACAAATTAG CCTTTTTG TGGCTCTGCT chr3L:13056883-13057003 7 1.61e-05 TGATTT CCTTTTTG GCCAAGATCA chr3R:13899949-13900069 7 1.61e-05 TTCATT CCTTTTTG CGAACTCTGG chr2R:16252115-16252235 79 1.61e-05 CGTTGAAGTT CCTTTTTG CATAGAAAAT chr3L:14989989-14990109 15 1.61e-05 TCTGCTGAAA CCTTTTTG GCCTTCCTGC chr2R:9700160-9700280 95 1.61e-05 GAGAAGTGTC CCTTTTTG CGTACTGGGG chr3R:15583568-15583688 49 3.28e-05 GCAAAGAATT CCTTTTTT GCAGATCCTC chr2R:9419908-9420028 110 3.28e-05 CTGGGTTTTC CCTTTTTT GCC chrX:17322262-17322382 30 3.28e-05 TTTCCAATTT CCTTTTTT TTTTTTGGTG chr2L:11075225-11075345 33 3.28e-05 ATTAGTTTTC CCTTTTTT GTATCGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17555915-17556035 1.6e-05 110_[+5]_2 chr3R:14477982-14478102 1.6e-05 70_[+5]_42 chr2L:20768486-20768606 1.6e-05 3_[+5]_109 chr2R:21553403-21553523 1.6e-05 84_[+5]_28 chr3L:13056883-13057003 1.6e-05 6_[+5]_106 chr3R:13899949-13900069 1.6e-05 6_[+5]_106 chr2R:16252115-16252235 1.6e-05 78_[+5]_34 chr3L:14989989-14990109 1.6e-05 14_[+5]_98 chr2R:9700160-9700280 1.6e-05 94_[+5]_18 chr3R:15583568-15583688 3.3e-05 48_[+5]_64 chr2R:9419908-9420028 3.3e-05 109_[+5]_3 chrX:17322262-17322382 3.3e-05 29_[+5]_83 chr2L:11075225-11075345 3.3e-05 32_[+5]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTTTTTG width=8 seqs=13 chr3L:17555915-17556035 ( 111) CCTTTTTG 1 chr3R:14477982-14478102 ( 71) CCTTTTTG 1 chr2L:20768486-20768606 ( 4) CCTTTTTG 1 chr2R:21553403-21553523 ( 85) CCTTTTTG 1 chr3L:13056883-13057003 ( 7) CCTTTTTG 1 chr3R:13899949-13900069 ( 7) CCTTTTTG 1 chr2R:16252115-16252235 ( 79) CCTTTTTG 1 chr3L:14989989-14990109 ( 15) CCTTTTTG 1 chr2R:9700160-9700280 ( 95) CCTTTTTG 1 chr3R:15583568-15583688 ( 49) CCTTTTTT 1 chr2R:9419908-9420028 ( 110) CCTTTTTT 1 chrX:17322262-17322382 ( 30) CCTTTTTT 1 chr2L:11075225-11075345 ( 33) CCTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 5.6e+002 -1035 207 -1035 -1035 -1035 207 -1035 -1035 -1035 -1035 -1035 195 -1035 -1035 -1035 195 -1035 -1035 -1035 195 -1035 -1035 -1035 195 -1035 -1035 -1035 195 -1035 -1035 148 25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.6e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTTTTTG MEME-5 regular expression -------------------------------------------------------------------------------- CCTTTTT[GT] -------------------------------------------------------------------------------- Time 32.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9700160-9700280 1.72e-02 94_[+5(1.61e-05)]_18 chr3R:5211540-5211660 4.76e-01 120 chr3L:16772894-16773014 2.19e-03 83_[+2(1.31e-05)]_29 chr2L:89297-89417 2.74e-01 120 chr2R:24808749-24808869 1.20e-02 97_[+3(8.34e-05)]_15 chr3R:19332191-19332311 5.75e-01 120 chr3L:8826177-8826297 1.01e-02 20_[+2(1.31e-05)]_92 chr3L:1471176-1471296 7.95e-04 65_[+4(1.48e-05)]_47 chr3L:9013884-9014004 6.17e-02 3_[+1(1.72e-05)]_109 chr3R:29307209-29307329 1.37e-01 120 chrX:19786982-19787102 2.02e-02 120 chr3R:27445450-27445570 1.78e-04 70_[+3(5.45e-05)]_42 chr3R:19839064-19839184 3.28e-03 60_[+3(1.42e-05)]_19_[+1(7.03e-05)]_\ 25 chr2L:19341546-19341666 2.04e-01 120 chr2R:25107764-25107884 8.72e-02 34_[+4(2.89e-05)]_78 chr3R:12382689-12382809 3.45e-01 120 chr2L:8872467-8872587 8.01e-03 17_[+4(1.48e-05)]_95 chr3L:15039649-15039769 4.44e-01 120 chr3L:2408084-2408204 5.77e-03 120 chr3L:9017553-9017673 5.99e-03 120 chr3R:4270007-4270127 1.73e-02 103_[+3(2.78e-05)]_9 chrX:17177717-17177837 8.28e-01 120 chr3L:16012429-16012549 5.67e-01 120 chr2L:3614678-3614798 6.22e-01 120 chr2L:15330780-15330900 2.31e-01 120 chr3R:21734612-21734732 9.65e-02 120 chr3R:15649064-15649184 7.68e-02 120 chr3L:22182887-22183007 8.66e-01 120 chrX:7035031-7035151 4.99e-01 120 chr3L:2385773-2385893 5.99e-01 120 chr3R:8203506-8203626 2.34e-01 120 chr2L:21339268-21339388 3.81e-01 120 chr2R:9981087-9981207 2.18e-01 120 chr2R:14454005-14454125 4.03e-03 78_[+4(1.48e-05)]_34 chr3L:15508872-15508992 3.85e-01 120 chr2L:11756791-11756911 1.45e-01 120 chr3L:11692992-11693112 1.77e-03 98_[+4(1.48e-05)]_14 chr3R:5118835-5118955 4.09e-01 120 chr2R:15002749-15002869 1.78e-01 120 chr3R:16506297-16506417 6.24e-02 82_[+3(6.92e-05)]_15_[+3(1.42e-05)]_\ 7 chr3R:27931600-27931720 4.63e-01 120 chr3L:14989989-14990109 1.35e-03 14_[+5(1.61e-05)]_98 chr3R:21458614-21458734 5.50e-02 120 chr3L:6500609-6500729 5.13e-03 6_[+1(1.72e-05)]_106 chr3L:9002699-9002819 1.65e-01 120 chr2L:1508279-1508399 8.96e-02 57_[+2(9.69e-05)]_55 chr2L:9146409-9146529 1.75e-02 9_[+3(1.42e-05)]_103 chr2L:22151589-22151709 1.88e-02 45_[+4(2.89e-05)]_67 chr3L:16564305-16564425 5.23e-01 120 chr2L:1511008-1511128 2.01e-01 120 chr3R:15654977-15655097 1.99e-02 101_[+2(6.90e-05)]_11 chrX:4207737-4207857 9.76e-02 120 chr2R:12775848-12775968 3.32e-01 120 chr2L:12666106-12666226 6.20e-05 70_[+2(1.31e-05)]_14_[+3(1.42e-05)]_\ 20 chr2L:14439767-14439887 3.98e-01 120 chr3R:13731136-13731256 4.29e-02 49_[+2(6.90e-05)]_63 chr2R:7592821-7592941 2.49e-01 120 chrX:7059120-7059240 4.40e-01 120 chr3L:8687691-8687811 8.52e-02 28_[+1(7.03e-05)]_84 chr2R:16252115-16252235 3.60e-02 78_[+5(1.61e-05)]_34 chr2R:21529146-21529266 2.36e-01 120 chr3L:6068316-6068436 1.10e-02 64_[+1(7.03e-05)]_29_[+3(1.42e-05)]_\ 11 chr2L:2448320-2448440 6.42e-01 120 chr2L:14773506-14773626 7.00e-01 120 chr2R:17803361-17803481 2.30e-01 120 chr2R:6511453-6511573 3.58e-01 120 chr3R:13811894-13812014 1.19e-01 26_[+5(6.48e-05)]_86 chr2L:16329818-16329938 9.61e-01 120 chr3L:22181680-22181800 3.07e-01 120 chr3R:21478142-21478262 5.61e-02 46_[+3(4.14e-05)]_66 chr3R:13879501-13879621 1.18e-02 21_[+3(8.34e-05)]_91 chr2R:20033599-20033719 2.56e-02 44_[+2(4.11e-05)]_16_[+2(2.74e-05)]_\ 44 chr3R:30568469-30568589 4.77e-01 120 chr3R:13899949-13900069 1.08e-04 6_[+5(1.61e-05)]_53_[+2(4.11e-05)]_\ 45 chr2R:14983033-14983153 3.98e-01 120 chr3R:4634654-4634774 1.67e-02 120 chr2L:18135627-18135747 1.46e-02 65_[+3(1.42e-05)]_47 chr3L:2385976-2386096 5.71e-02 99_[+2(6.90e-05)]_13 chr3R:29459672-29459792 8.19e-01 120 chr3L:22783089-22783209 3.83e-02 120 chrX:19849378-19849498 1.75e-01 120 chr3R:4847550-4847670 1.09e-03 54_[+2(1.31e-05)]_58 chr2L:11071008-11071128 2.01e-01 120 chr2L:12899416-12899536 1.60e-01 47_[+3(1.42e-05)]_25_[+3(2.78e-05)]_\ 32 chr2L:15323344-15323464 5.37e-02 51_[+2(6.90e-05)]_61 chrX:20678374-20678494 5.12e-02 120 chr2L:4281331-4281451 2.11e-01 120 chr3L:8660939-8661059 6.74e-01 120 chr3L:13056883-13057003 3.14e-02 6_[+5(1.61e-05)]_106 chr3R:29771119-29771239 7.31e-02 49_[+4(2.89e-05)]_63 chr3L:8481100-8481220 1.10e-01 120 chr3R:12123741-12123861 1.02e-03 26_[+2(2.74e-05)]_47_[+3(1.42e-05)]_\ 31 chr2R:15034211-15034331 1.92e-03 103_[+3(2.78e-05)]_9 chr2R:9405330-9405450 3.62e-02 28_[+2(6.90e-05)]_84 chr3R:4923016-4923136 5.61e-01 120 chr3R:21825880-21826000 2.48e-01 120 chr2L:5238038-5238158 3.15e-02 52_[+4(4.49e-05)]_60 chr3R:30856454-30856574 1.43e-01 120 chrX:3843715-3843835 1.49e-01 120 chr3R:30866008-30866128 3.03e-01 120 chr2R:10077298-10077418 7.78e-02 28_[+1(7.03e-05)]_84 chrX:417392-417512 7.75e-01 120 chr3R:24726452-24726572 3.35e-02 120 chrX:2436507-2436627 9.37e-02 120 chr3L:14964948-14965068 5.48e-01 120 chr2L:15324574-15324694 2.51e-02 120 chr3R:26015287-26015407 1.22e-01 18_[+2(6.90e-05)]_94 chr3R:25173134-25173254 1.97e-01 120 chr3R:16570623-16570743 9.35e-02 120 chr3L:8497541-8497661 3.71e-01 120 chr3R:8275140-8275260 3.26e-01 120 chr2L:9602188-9602308 1.47e-01 120 chr2R:19662017-19662137 3.22e-01 120 chr2R:25057047-25057167 1.37e-02 44_[+4(8.86e-05)]_68 chr3R:8841408-8841528 5.72e-01 120 chr3R:4858176-4858296 4.45e-03 1_[+2(1.31e-05)]_111 chr3R:4458436-4458556 2.39e-03 43_[+4(2.89e-05)]_56_[+1(3.37e-05)]_\ 5 chr2R:8654926-8655046 3.57e-01 120 chr3L:15703484-15703604 3.11e-02 120 chrX:9789848-9789968 3.15e-01 120 chr3R:12128725-12128845 5.11e-03 85_[+4(1.48e-05)]_27 chr2L:8510473-8510593 5.75e-02 120 chr2L:6543894-6544014 4.60e-01 120 chr3R:21506441-21506561 7.20e-02 44_[+3(5.45e-05)]_68 chr2R:11532536-11532656 5.41e-01 120 chr3L:12647439-12647559 7.05e-02 11_[+5(6.48e-05)]_101 chr3R:18991054-18991174 3.06e-02 6_[+2(6.90e-05)]_106 chr2L:3541186-3541306 3.96e-04 19_[+2(1.31e-05)]_18_[+1(1.72e-05)]_\ 67 chr2L:14577314-14577434 1.73e-01 120 chr3R:16526395-16526515 3.37e-01 120 chr3L:12465383-12465503 2.76e-01 120 chrX:15684531-15684651 9.06e-02 120 chr2L:600749-600869 3.94e-01 120 chr3L:1480927-1481047 9.87e-02 120 chr2L:11075225-11075345 1.28e-02 32_[+5(3.28e-05)]_80 chr2R:24800863-24800983 9.02e-01 120 chr3R:29463761-29463881 2.82e-01 120 chrX:2982551-2982671 3.66e-01 120 chr3L:2438518-2438638 6.55e-02 61_[+4(1.48e-05)]_51 chr3R:16390448-16390568 8.02e-02 120 chr3L:14153735-14153855 7.20e-01 120 chr3R:10222529-10222649 4.13e-03 111_[+4(1.48e-05)]_1 chr3L:15701803-15701923 9.87e-01 120 chr2L:6373280-6373400 2.16e-02 120 chr3R:16570828-16570948 6.98e-02 120 chr3R:22223519-22223639 5.02e-03 56_[+2(2.74e-05)]_56 chr2L:9150230-9150350 2.07e-01 120 chr3R:31852331-31852451 1.34e-01 54_[+3(5.45e-05)]_58 chr2L:21853519-21853639 1.12e-01 120 chr3L:10966754-10966874 3.08e-04 64_[+4(2.89e-05)]_5_[+2(6.90e-05)]_\ 35 chr2L:11794057-11794177 2.77e-01 120 chr2R:19840779-19840899 6.70e-01 120 chr3R:24846058-24846178 2.36e-01 120 chr2L:3078344-3078464 3.45e-01 120 chr3L:12603368-12603488 5.31e-01 120 chr2R:21193033-21193153 6.71e-02 58_[+4(4.49e-05)]_54 chr2R:15904408-15904528 1.51e-01 120 chrX:8216278-8216398 2.03e-01 120 chr2L:15742832-15742952 1.89e-02 120 chr3L:14195439-14195559 5.93e-01 120 chr3L:4408962-4409082 2.84e-01 120 chr2R:20471210-20471330 4.18e-01 120 chr3L:19083283-19083403 3.12e-02 74_[+1(3.37e-05)]_38 chr2R:15033030-15033150 1.81e-02 98_[+3(4.14e-05)]_14 chr3L:25676960-25677080 2.30e-01 120 chr3L:735466-735586 7.62e-01 120 chr3L:4643927-4644047 5.66e-02 44_[+2(6.90e-05)]_68 chr2R:8246285-8246405 8.67e-01 120 chr3R:29559716-29559836 1.60e-02 3_[+3(1.42e-05)]_109 chr2R:5677808-5677928 2.05e-01 120 chr3R:7035820-7035940 2.31e-03 98_[+4(2.89e-05)]_14 chr2L:3549847-3549967 2.39e-02 21_[+2(2.74e-05)]_91 chr2R:20911166-20911286 3.29e-02 26_[+1(1.72e-05)]_86 chr3R:23195821-23195941 1.40e-01 120 chr2L:1958542-1958662 1.81e-02 120 chr2L:18334018-18334138 2.94e-02 54_[+2(1.31e-05)]_58 chr3R:18072265-18072385 2.18e-01 120 chr2R:21553403-21553523 7.72e-04 84_[+5(1.61e-05)]_28 chr3R:28320783-28320903 3.75e-02 120 chr3R:30041016-30041136 1.72e-01 120 chrX:20739720-20739840 7.81e-01 120 chrX:17322262-17322382 7.53e-03 29_[+5(3.28e-05)]_83 chr3L:14185233-14185353 4.73e-01 120 chr2L:2457136-2457256 7.48e-02 120 chr3R:13989047-13989167 7.24e-02 46_[+2(1.31e-05)]_66 chr2L:20768486-20768606 5.74e-03 3_[+5(1.61e-05)]_109 chr3R:4340322-4340442 2.62e-03 14_[+1(7.03e-05)]_75_[+2(2.74e-05)]_\ 15 chr2R:14291303-14291423 4.48e-01 120 chrX:4613757-4613877 7.79e-01 120 chr3L:8653159-8653279 8.87e-01 120 chr3R:12645910-12646030 2.61e-01 120 chr3R:8965689-8965809 4.82e-01 120 chr3L:1772728-1772848 3.41e-01 120 chr3L:1410486-1410606 8.86e-03 62_[+2(1.31e-05)]_50 chr3L:47774-47894 8.45e-02 120 chr3R:4875356-4875476 2.28e-01 120 chr3R:8151199-8151319 4.65e-03 53_[+3(4.14e-05)]_59 chr2L:12466649-12466769 1.44e-01 14_[+2(9.69e-05)]_98 chr2R:8638473-8638593 8.51e-01 120 chr2L:8849317-8849437 3.12e-01 120 chr2L:7296812-7296932 6.30e-01 120 chr3L:18218640-18218760 3.41e-01 120 chr3L:12649170-12649290 1.18e-01 94_[+3(5.45e-05)]_18 chr2R:6557957-6558077 1.99e-01 120 chr3L:10105922-10106042 2.51e-01 120 chr3L:5983063-5983183 7.43e-03 19_[+3(6.92e-05)]_93 chr3R:14477982-14478102 3.10e-03 70_[+5(1.61e-05)]_[+5(6.48e-05)]_34 chr3R:25195122-25195242 5.78e-03 48_[+4(1.48e-05)]_64 chr2L:8875954-8876074 1.80e-02 120 chr2L:4823901-4824021 3.51e-01 120 chr3R:16554399-16554519 1.24e-01 111_[+1(7.03e-05)]_1 chr2R:11191697-11191817 2.40e-01 120 chr3R:30313577-30313697 4.68e-01 120 chr3L:18307242-18307362 8.47e-01 120 chr2R:9419908-9420028 2.52e-03 109_[+5(3.28e-05)]_3 chr2L:16274165-16274285 8.69e-01 120 chr2L:6241206-6241326 3.49e-04 112_[+3(2.78e-05)] chr2L:5234070-5234190 9.73e-01 120 chr3R:15583568-15583688 1.44e-04 48_[+5(3.28e-05)]_9_[+1(1.72e-05)]_\ 47 chr2R:12530782-12530902 8.66e-01 120 chr3R:14037479-14037599 6.79e-02 25_[+1(1.72e-05)]_87 chr3R:7155669-7155789 1.50e-01 3_[+3(1.42e-05)]_109 chr2R:21367521-21367641 4.50e-01 120 chr2R:20959333-20959453 1.48e-01 120 chr2L:3818217-3818337 2.37e-01 120 chr2R:19979101-19979221 4.44e-01 120 chr2R:17753427-17753547 6.54e-01 120 chrX:20703065-20703185 1.56e-01 120 chr3L:9012339-9012459 2.75e-01 120 chr3R:15640110-15640230 2.26e-01 120 chrX:20717358-20717478 6.60e-02 19_[+3(8.34e-05)]_19_[+3(2.78e-05)]_\ 66 chr3R:16829302-16829422 2.36e-01 120 chr3R:16534052-16534172 8.43e-01 120 chr2L:4282266-4282386 2.51e-01 120 chr2L:3822663-3822783 1.40e-01 120 chr2R:20056869-20056989 5.05e-01 120 chr3L:13069186-13069306 6.95e-01 120 chr3R:25173728-25173848 1.11e-01 61_[+3(8.34e-05)]_51 chrX:5551003-5551123 4.47e-01 120 chr2R:12455137-12455257 4.48e-02 11_[+4(4.49e-05)]_101 chr3L:9037737-9037857 6.73e-01 120 chr2R:7947879-7947999 1.57e-01 120 chr2L:5890705-5890825 2.73e-01 120 chr3L:17416652-17416772 3.22e-01 120 chr3L:17555915-17556035 1.81e-02 110_[+5(1.61e-05)]_2 chr3L:15756087-15756207 2.41e-01 120 chrX:3841797-3841917 6.67e-02 120 chr3L:5856566-5856686 8.96e-01 120 chrX:11989021-11989141 1.24e-01 45_[+3(6.92e-05)]_67 chr2L:12080093-12080213 5.00e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************