******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/yki.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrY:124303-124423 1.0000 120 chr2R:14715857-14715977 1.0000 120 chr2R:19411413-19411533 1.0000 120 chr2L:8542797-8542917 1.0000 120 chr3L:21047895-21048015 1.0000 120 chr2R:14959032-14959152 1.0000 120 chr3R:17666163-17666283 1.0000 120 chr3L:12804401-12804521 1.0000 120 chrX:14082849-14082969 1.0000 120 chr3R:17920443-17920563 1.0000 120 chrX:15633505-15633625 1.0000 120 chr2L:12505015-12505135 1.0000 120 chrX:10823599-10823719 1.0000 120 chr3R:11254563-11254683 1.0000 120 chr3R:1441423-1441543 1.0000 120 chr3L:16029152-16029272 1.0000 120 chr2R:24712887-24713007 1.0000 120 chrX:17651379-17651499 1.0000 120 chr3R:13815121-13815241 1.0000 120 chr3L:18792908-18793028 1.0000 120 chr2R:14713665-14713785 1.0000 120 chr2L:12435922-12436042 1.0000 120 chr3R:31621926-31622046 1.0000 120 chr3L:6997556-6997676 1.0000 120 chr3L:11428536-11428656 1.0000 120 chr3R:18849332-18849452 1.0000 120 chr2R:18231251-18231371 1.0000 120 chrX:17710914-17711034 1.0000 120 chr3R:16899092-16899212 1.0000 120 chrX:2255120-2255240 1.0000 120 chr3L:21916474-21916594 1.0000 120 chr3L:14219738-14219858 1.0000 120 chr3L:18139223-18139343 1.0000 120 chr2L:7245424-7245544 1.0000 120 chr2R:10225166-10225286 1.0000 120 chr2L:15332690-15332810 1.0000 120 chr2R:25114338-25114458 1.0000 120 chr2R:5893629-5893749 1.0000 120 chr2L:3545398-3545518 1.0000 120 chr2R:6828191-6828311 1.0000 120 chrX:5965708-5965828 1.0000 120 chr3R:22899119-22899239 1.0000 120 chr3R:2518751-2518871 1.0000 120 chr2L:701975-702095 1.0000 120 chrX:22373618-22373738 1.0000 120 chrM:4068-4188 1.0000 120 chr3L:21047470-21047590 1.0000 120 chr2R:7146985-7147105 1.0000 120 chr2R:19141956-19142076 1.0000 120 chrX:16089414-16089534 1.0000 120 chrX:15163027-15163147 1.0000 120 chr3R:15664880-15665000 1.0000 120 chrX:1234262-1234382 1.0000 120 chr3L:15329677-15329797 1.0000 120 chr2R:16583522-16583642 1.0000 120 chrX:3332636-3332756 1.0000 120 chr2L:23512804-23512924 1.0000 120 chr3R:17557594-17557714 1.0000 120 chr2R:11134452-11134572 1.0000 120 chr3R:5414296-5414416 1.0000 120 chr3R:2534010-2534130 1.0000 120 chr3R:23239195-23239315 1.0000 120 chr3L:9047086-9047206 1.0000 120 chr3L:15090413-15090533 1.0000 120 chrM:1256-1376 1.0000 120 chr3L:4363641-4363761 1.0000 120 chr3R:11760149-11760269 1.0000 120 chr2L:12545838-12545958 1.0000 120 chrX:16526224-16526344 1.0000 120 chrX:15076698-15076818 1.0000 120 chrX:12007679-12007799 1.0000 120 chr3L:13993477-13993597 1.0000 120 chr2L:23371749-23371869 1.0000 120 chr2L:826510-826630 1.0000 120 chr3L:2780899-2781019 1.0000 120 chrX:395925-396045 1.0000 120 chr3R:25208358-25208478 1.0000 120 chr3R:4739013-4739133 1.0000 120 chr3R:15476430-15476550 1.0000 120 chr2R:21843177-21843297 1.0000 120 chr2R:24736756-24736876 1.0000 120 chr2L:7249505-7249625 1.0000 120 chr3L:6943459-6943579 1.0000 120 chr3R:17566966-17567086 1.0000 120 chrX:16087608-16087728 1.0000 120 chr3L:872153-872273 1.0000 120 chr3R:19225758-19225878 1.0000 120 chr3R:17805186-17805306 1.0000 120 chr2R:6196233-6196353 1.0000 120 chr2R:16104010-16104130 1.0000 120 chr2R:13991754-13991874 1.0000 120 chr2R:8272781-8272901 1.0000 120 chr2L:1006667-1006787 1.0000 120 chr2R:16499924-16500044 1.0000 120 chrX:4508181-4508301 1.0000 120 chr2R:15485609-15485729 1.0000 120 chr2R:18232612-18232732 1.0000 120 chr3L:18787950-18788070 1.0000 120 chr2L:7495527-7495647 1.0000 120 chr2L:12854649-12854769 1.0000 120 chr3L:2824859-2824979 1.0000 120 chrX:8215091-8215211 1.0000 120 chr3R:9534701-9534821 1.0000 120 chrX:7697436-7697556 1.0000 120 chr3L:2585912-2586032 1.0000 120 chr3L:1098870-1098990 1.0000 120 chr2L:14054431-14054551 1.0000 120 chr3R:10638864-10638984 1.0000 120 chr3R:25184678-25184798 1.0000 120 chr3R:31712992-31713112 1.0000 120 chr3R:30090390-30090510 1.0000 120 chr3L:1921046-1921166 1.0000 120 chrX:7196104-7196224 1.0000 120 chr3L:5277188-5277308 1.0000 120 chr2R:10798778-10798898 1.0000 120 chr2L:13878112-13878232 1.0000 120 chr2R:14041194-14041314 1.0000 120 chr3L:11247946-11248066 1.0000 120 chr2R:12119091-12119211 1.0000 120 chr2R:13043335-13043455 1.0000 120 chrX:6988990-6989110 1.0000 120 chr2L:2753714-2753834 1.0000 120 chrX:11372836-11372956 1.0000 120 chr2R:10219681-10219801 1.0000 120 chrM:6506-6626 1.0000 120 chr3R:17776445-17776565 1.0000 120 chr3R:6405342-6405462 1.0000 120 chr3L:10308050-10308170 1.0000 120 chr2R:13622867-13622987 1.0000 120 chrX:6353093-6353213 1.0000 120 chrX:1964939-1965059 1.0000 120 chr3R:29313197-29313317 1.0000 120 chr2R:18401877-18401997 1.0000 120 chr3R:22042670-22042790 1.0000 120 chrX:19718491-19718611 1.0000 120 chr2R:17794196-17794316 1.0000 120 chrX:5636582-5636702 1.0000 120 chr2L:6252825-6252945 1.0000 120 chr3R:9866093-9866213 1.0000 120 chr2L:2242213-2242333 1.0000 120 chr3L:9695460-9695580 1.0000 120 chrX:18621900-18622020 1.0000 120 chr3L:18846268-18846388 1.0000 120 chrX:5340099-5340219 1.0000 120 chrX:10309152-10309272 1.0000 120 chrX:12546339-12546459 1.0000 120 chrX:10209726-10209846 1.0000 120 chr2L:12975082-12975202 1.0000 120 chr2R:17796099-17796219 1.0000 120 chr2R:8985613-8985733 1.0000 120 chrX:5770884-5771004 1.0000 120 chr2R:21128032-21128152 1.0000 120 chr3L:13227731-13227851 1.0000 120 chr3R:28635631-28635751 1.0000 120 chrX:8057921-8058041 1.0000 120 chr3R:4175239-4175359 1.0000 120 chr3R:30389198-30389318 1.0000 120 chr3R:16719962-16720082 1.0000 120 chrM:8275-8395 1.0000 120 chr3R:16978047-16978167 1.0000 120 chr2R:8862562-8862682 1.0000 120 chrX:3451388-3451508 1.0000 120 chr2L:19398084-19398204 1.0000 120 chr4:960186-960306 1.0000 120 chr2R:15698127-15698247 1.0000 120 chr2L:17752632-17752752 1.0000 120 chr3L:11046692-11046812 1.0000 120 chrX:14212217-14212337 1.0000 120 chr3L:9466049-9466169 1.0000 120 chrX:6997430-6997550 1.0000 120 chr2R:16196389-16196509 1.0000 120 chr3L:17989466-17989586 1.0000 120 chr3L:15507599-15507719 1.0000 120 chrX:2789867-2789987 1.0000 120 chrX:5047185-5047305 1.0000 120 chr3R:15419373-15419493 1.0000 120 chr2L:16520622-16520742 1.0000 120 chr2L:594799-594919 1.0000 120 chr2R:9440857-9440977 1.0000 120 chr3R:12477379-12477499 1.0000 120 chr2R:13502045-13502165 1.0000 120 chrX:6981799-6981919 1.0000 120 chr2R:1515179-1515299 1.0000 120 chr3R:4174508-4174628 1.0000 120 chr2L:8544065-8544185 1.0000 120 chr3L:1102494-1102614 1.0000 120 chrX:13747278-13747398 1.0000 120 chr3L:22910336-22910456 1.0000 120 chr3L:15014469-15014589 1.0000 120 chrX:5613175-5613295 1.0000 120 chrX:8215953-8216073 1.0000 120 chr3L:11124054-11124174 1.0000 120 chr2R:14768759-14768879 1.0000 120 chr3R:16449754-16449874 1.0000 120 chr2L:18845037-18845157 1.0000 120 chr3L:26012678-26012798 1.0000 120 chr3L:20295242-20295362 1.0000 120 chr3R:29691222-29691342 1.0000 120 chr3L:16047253-16047373 1.0000 120 chr3L:21644713-21644833 1.0000 120 chr3R:25472705-25472825 1.0000 120 chrX:5047942-5048062 1.0000 120 chrX:8058885-8059005 1.0000 120 chr2L:2451039-2451159 1.0000 120 chr3R:5701220-5701340 1.0000 120 chr2L:13550761-13550881 1.0000 120 chr3R:3374279-3374399 1.0000 120 chr2L:8031732-8031852 1.0000 120 chrX:1975978-1976098 1.0000 120 chr2L:12546102-12546222 1.0000 120 chr3L:19908528-19908648 1.0000 120 chrX:9639194-9639314 1.0000 120 chr2L:3538992-3539112 1.0000 120 chr3R:27580585-27580705 1.0000 120 chr2L:3534252-3534372 1.0000 120 chr3L:15079485-15079605 1.0000 120 chr2L:1491928-1492048 1.0000 120 chr3L:3545019-3545139 1.0000 120 chrM:4393-4513 1.0000 120 chr3L:14621632-14621752 1.0000 120 chr2R:21720575-21720695 1.0000 120 chr2R:10430487-10430607 1.0000 120 chr3R:11237640-11237760 1.0000 120 chrX:6013346-6013466 1.0000 120 chrX:5524698-5524818 1.0000 120 chr3L:21598508-21598628 1.0000 120 chr3L:3542673-3542793 1.0000 120 chr3L:10680971-10681091 1.0000 120 chr3L:21025684-21025804 1.0000 120 chr3L:19896459-19896579 1.0000 120 chr3R:18063331-18063451 1.0000 120 chr2R:25285539-25285659 1.0000 120 chr3L:21023439-21023559 1.0000 120 chrX:1943390-1943510 1.0000 120 chr3L:9694547-9694667 1.0000 120 chr2R:6631479-6631599 1.0000 120 chr3R:20949253-20949373 1.0000 120 chr3R:6780177-6780297 1.0000 120 chr2L:12655868-12655988 1.0000 120 chrX:8518241-8518361 1.0000 120 chrX:16559523-16559643 1.0000 120 chr2L:12436254-12436374 1.0000 120 chr2R:20916558-20916678 1.0000 120 chr2R:15349548-15349668 1.0000 120 chr3L:1885485-1885605 1.0000 120 chr3R:28861363-28861483 1.0000 120 chr3R:30563613-30563733 1.0000 120 chr3L:7808928-7809048 1.0000 120 chr2L:15478336-15478456 1.0000 120 chr2R:12985768-12985888 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_yki/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/yki.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.264 C 0.242 G 0.234 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.264 C 0.242 G 0.234 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-1 width = 8 sites = 146 llr = 1237 E-value = 6.7e-142 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C a:a:a:81 probability G :3:::::1 matrix T :7:a:928 bits 2.1 1.9 * *** 1.7 * **** 1.5 * **** Relative 1.3 ******* Entropy 1.0 ******* (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28861363-28861483 113 1.59e-05 ctctctctct ctctctct chr3L:1885485-1885605 66 1.59e-05 CCAtctctct ctctctct cttgttccct chr2R:15349548-15349668 19 1.59e-05 ctcttgcact ctctctct ctctctGTGT chrX:8518241-8518361 55 1.59e-05 ccgccttcct ctctctct ctTACCTGAG chr3R:20949253-20949373 108 1.59e-05 TGctctctct ctctctct ctgcc chrX:1943390-1943510 96 1.59e-05 GTCTCTTGCT CTCTCTCT CTCACGCTAC chr3R:18063331-18063451 55 1.59e-05 ATCGCGCGCT CTCTCTCT CTCTCGGGCA chrX:6013346-6013466 21 1.59e-05 gtgccgctct ctctctct ctctcgctAT chr2R:10430487-10430607 11 1.59e-05 tgctggctca ctctctcT AATTCCTCGC chr3L:3545019-3545139 76 1.59e-05 CTCGCTGTCT CTCTCTCT TAGGTTCCAC chr3R:5701220-5701340 31 1.59e-05 ctctctctct ctctctct ctctctctTT chr2L:2451039-2451159 81 1.59e-05 TACGACGGAC CTCTCTCT CGTGGAGTGG chrX:5047942-5048062 110 1.59e-05 AACACTCTCA CTCTCTCT CAC chr3L:16047253-16047373 104 1.59e-05 ctctctctca ctctctct cactctgtc chr2L:18845037-18845157 87 1.59e-05 ccctctctct ctctctct TTGGCTTTTA chrX:8215953-8216073 98 1.59e-05 CGCTCTCGCG CTCTCTCT CGATTTTGTT chrX:13747278-13747398 33 1.59e-05 CTTTTtcgct ctctctct ctctatctct chr3L:1102494-1102614 17 1.59e-05 CGAATTGGCT CTCTCTCT TTCGCGAGAG chr2L:594799-594919 104 1.59e-05 ACGCctctcc ctctctct gtatcctcc chr3L:17989466-17989586 23 1.59e-05 CCGCTCTCTT CTCTCTCT CGCTCGTTTT chr3L:9466049-9466169 1 1.59e-05 . CTCTCTCT TTTACTTTAC chrX:14212217-14212337 96 1.59e-05 ctctctttcc ctctctct ctcCGCCTTT chrX:5770884-5771004 45 1.59e-05 CTCGCACTAT CTCTCTCT TGGGCATCTG chr3L:18846268-18846388 43 1.59e-05 GCATtctcct ctctctct ctctctcact chrX:5636582-5636702 113 1.59e-05 ctctctctcc ctctctct chrX:1964939-1965059 76 1.59e-05 ctcgctctct ctctctct ctctGCTGCT chr2R:12119091-12119211 35 1.59e-05 tctccgctct ctctctct ctggctcctt chr2R:14041194-14041314 15 1.59e-05 GCTTTTCCCG ctctctct ctctcgctct chr2L:13878112-13878232 98 1.59e-05 TGTTTTTTCA CTCTCTCT TAAAGAGTGT chrX:7196104-7196224 45 1.59e-05 cCATACTCCA CTCTCTCT CCCTCTCTCG chr3L:1098870-1098990 37 1.59e-05 GCTtctctct ctctctct ctctgcctct chrX:8215091-8215211 27 1.59e-05 ATTGTGCTGT CTCTCTCT CCCGCTCCCG chr3L:2824859-2824979 10 1.59e-05 ATGCAGCTG CTCTCTCT CTTCCACACA chr2R:8272781-8272901 24 1.59e-05 AAATGCTCCG CTCTCTCT GTTCGCCACA chr3R:17566966-17567086 100 1.59e-05 ttctctctct ctctctct ctctTTACTT chr2L:7249505-7249625 76 1.59e-05 TCTCGCCGCG CTCTCTCT GAGCGCCGCC chr3R:25208358-25208478 79 1.59e-05 tctttgctct ctctctct cgctTGGAAT chrX:395925-396045 41 1.59e-05 Gtcactctct ctctctct ttctctccga chr2L:826510-826630 99 1.59e-05 gacctgcgct ctctctct ttatctcgcc chrX:12007679-12007799 86 1.59e-05 ctctccctct ctctctct ctgtcacgct chrX:16526224-16526344 71 1.59e-05 AGCCAGTGCC CTCTCTCT TGCGCTCTCA chr3R:5414296-5414416 20 1.59e-05 AGctctctct ctctctct cgctctcGAA chr3R:17557594-17557714 51 1.59e-05 GTCTCGCCGT CTCTCTCT TTCGACGGGT chrX:15163027-15163147 77 1.59e-05 ggctctctct ctctctct ctctctAGAG chr2R:19141956-19142076 113 1.59e-05 ctctcactct ctctctct chr3L:21047470-21047590 94 1.59e-05 TGGCACGCGG CTCTCTCT TCTCGACTGC chr2R:25114338-25114458 97 1.59e-05 ctctccctct ctctctct ctctctctTG chr2R:18231251-18231371 43 1.59e-05 ttcgctctcc ctctctct GAATTCAAGC chr3R:18849332-18849452 88 1.59e-05 ctctctctct ctctctct ttctctctcA chr3L:6997556-6997676 109 1.59e-05 cgcgctctct ctctctct ctct chr3L:18792908-18793028 97 1.59e-05 ctctctctct ctctctct ctTAGCGAGT chr3R:11254563-11254683 70 1.59e-05 ctctctctca ctctctct ctctctgtct chrX:10823599-10823719 18 1.59e-05 GTTTTTCCCG ctctctct tcgctcatcg chrX:15633505-15633625 23 1.59e-05 ccctctctct ctctctct ctctctGGTG chr3L:12804401-12804521 104 1.59e-05 cactctccct ctctctct ctcacagtc chr3R:17666163-17666283 7 1.59e-05 CGCTCG CTCTCTCT CGCTCTCCTC chr2R:14959032-14959152 102 1.59e-05 cgctctctct ctctctct gtccttccat chr3L:21047895-21048015 49 1.59e-05 ctctctctct ctctctct cGTTTTTCTC chr2R:14715857-14715977 96 1.59e-05 ctctctccct ctctctct ctGGTTTTCC chr3R:30563613-30563733 60 3.02e-05 GCTCTCTTCT CGCTCTCT TTCGGCATTC chrX:16559523-16559643 46 3.02e-05 ctcccgctct cgctctcT CACGGCTCAG chr3L:9694547-9694667 39 3.02e-05 CTGCGCACTG CGCTCTCT TTCGCTCGCT chr3L:19896459-19896579 92 3.02e-05 tgtccactct cgctctct ggctcctcgc chr2L:13550761-13550881 32 3.02e-05 CCGCAGctgt cgctctct ccttttccgt chr3L:11124054-11124174 50 3.02e-05 CGCACTCTCC CGCTCTCT TGTCTCTTCT chrX:3451388-3451508 83 3.02e-05 TTTTTATTCT CGCTCTCT TTGCCCTCTT chr3R:30389198-30389318 33 3.02e-05 TCGTTGCACT CGCTCTCT TTGCGTGCCT chrX:12546339-12546459 35 3.02e-05 CActctctcc cgctctct ttcactctcc chr3R:22042670-22042790 97 3.02e-05 TGCGCTCTCT CGCTCTCT CAGTATCTCT chr3R:6405342-6405462 110 3.02e-05 CTCTGCCTCG CGCTCTCT TCT chr3L:2585912-2586032 92 3.02e-05 ctcttcttct cgctctct gtctctctcc chr2L:12854649-12854769 48 3.02e-05 CTCCGCTCTT CGCTCTCT TGTCAGCGTT chr2R:13991754-13991874 68 3.02e-05 TTCTCTCATT CGCTCTCT TTGAGTTATA chr2L:701975-702095 88 3.02e-05 AGGAGAAGCC CGCTCTCT TTCTCTCCGA chr3R:22899119-22899239 26 3.02e-05 AGCCATCTTT CGCTCTCT GAGCAGTGCC chr2R:6828191-6828311 51 3.02e-05 GCGGGGAGAG CGCTCTCT CGgaggagat chr3L:14219738-14219858 92 3.02e-05 cactctctcg cgctctct cGCGCGGGTG chr3L:21598508-21598628 56 4.73e-05 AATGGCTGTG CTCTCTTT GGGCGGCGGG chr3L:15079485-15079605 62 4.73e-05 CTTGCTTTCC CTCTCTTT CGCTGTGCGT chr3R:16449754-16449874 20 4.73e-05 ctctctagca ctctcttt ctcgcactct chr3L:22910336-22910456 87 4.73e-05 TTCTCTCCGG CTCTCTTT GTGCTGCTGC chr2R:13502045-13502165 11 4.73e-05 ttctctctaa ctctcttt gaatttctct chrX:10309152-10309272 22 4.73e-05 GTCCCTCTGA CTCTCTTT GCTCTCTAAC chr2L:14054431-14054551 23 4.73e-05 gagagagCTG CTCTCTTT GGGGAGAAAG chr3R:9534701-9534821 101 4.73e-05 ACCCCACCGC CTCTCTTT CGCTCTCCGG chr2L:7495527-7495647 98 4.73e-05 CTCTTCCGTG CTCTCTTT CAGGGATCAA chr2R:16499924-16500044 7 4.73e-05 ctctca ctctcttt ctctAGAGAA chrX:15076698-15076818 103 4.73e-05 GAGATTAGGA CTCTCTTT GAGGACCCCA chr2R:5893629-5893749 91 4.73e-05 AGCTCGCGAT CTCTCTTT TGGGGCTCTC chr2L:7245424-7245544 108 4.73e-05 AAAGAGTGCA CTCTCTTT CGGCC chr2R:20916558-20916678 90 6.16e-05 GTCCTGCGCA CTCTCTCG CGCTCTCGCA chr3L:10680971-10681091 51 6.16e-05 CTTTCGCCTG CTCTCTCG CTTTTTCTCT chr2L:3534252-3534372 16 6.16e-05 ATCTCTATCC CTCTCTCG CTCTCATTGG chr2R:8862562-8862682 76 7.64e-05 AGAAAAAGTG CTCTCTCC ACTCTGCGTT chr2R:17796099-17796219 55 7.64e-05 AAAGCTCTTT CTCTCTCC GCCATGCGAA chr2R:10219681-10219801 75 7.64e-05 ctctcacgca ctctctcc cgctctccca chr2L:3538992-3539112 74 9.18e-05 TTTCTCAGTT CGCTCTTT AGCTCATTTT chrX:6981799-6981919 100 9.18e-05 TTTTTTAATT CGCTCTTT TTTTCCAAct chr2L:6252825-6252945 88 9.18e-05 AAGAGAGTGG CGCTCTTT TAACCTACTC chr3L:10308050-10308170 49 9.18e-05 TACTCCGGCC CGCTCTTT TGGCTCTCTC chr3L:16029152-16029272 101 9.18e-05 TTCTCTTTAC CGCTCTTT TCTCAATCAG chr2L:15478336-15478456 110 1.08e-04 tctacctgct ctctcact ctc chrX:16087608-16087728 42 1.08e-04 GTATCTCTAT CTCTCACT TTTGACACTC chr3L:6943459-6943579 110 1.08e-04 TGGCCGAGTG ctctcact cac chr3R:23239195-23239315 35 1.08e-04 GGCTGGAGCG CTCTCACT GGAATCAGTG chr2L:12505015-12505135 111 1.08e-04 ttctttcttt ctctcact ct chr3R:4175239-4175359 73 1.21e-04 CTTTTCATTA CGCTCTCG ACTGGAACGC chr2R:13622867-13622987 73 1.21e-04 AAAGTTGCCG CGCTCTCG CTCTCGCTGG chr3L:1921046-1921166 44 1.21e-04 cgcacgcata cgctctcg caAGgagagc chr2R:6196233-6196353 53 1.21e-04 TTAGGCTCGG CGCTCTCG CCGCGCTCGG chr3L:21023439-21023559 8 1.34e-04 GTCGCCA CGCTCTCC GTCTCGCTCA chr2R:14768759-14768879 32 1.34e-04 ctctcgcacg cgctctcC GCAGCTTGCG chr2R:21128032-21128152 24 1.34e-04 CCAGGACGTG CGCTCTCC GTGCTCATGG chr2L:2242213-2242333 94 1.34e-04 GGGGTCGCCG CGCTCTCC GCTCCGATTC chr3R:30090390-30090510 2 1.34e-04 T CGCTCTCC CCGGGGGATT chr2R:24736756-24736876 34 1.34e-04 GAGAGCGGCG CGCTCTCC CGTGCGCCGT chr3L:3542673-3542793 44 1.50e-04 GAGAGTTGTG CTCTCTCA TTTGTTTGTT chr2L:12975082-12975202 46 1.83e-04 CCACTCCACC CTCTCTTG TTTTTCTTTG chr3L:11247946-11248066 106 1.83e-04 ACATGTGAAA CTCTCTTG AGTGGTT chrX:2255120-2255240 95 1.83e-04 CATGTTCTTC ctctcttg ctcgctcgct chr2R:25285539-25285659 49 1.98e-04 tgaatatatt ctctcttc gagaagcgtc chr2L:12546102-12546222 11 1.98e-04 ttcgctgcca ctctctTC AAATCTGCAG chr2R:10798778-10798898 47 1.98e-04 TCTCCCGCTG CTCTCTTC GAAATGCAAC chrX:7697436-7697556 99 1.98e-04 CTTCAATTGG CTCTCTTC CAAACTTCTC chr3L:18139223-18139343 111 2.13e-04 CGGCTCTTTG CGCTCACT CT chr3R:16899092-16899212 91 2.13e-04 TAAGAGCGAC CGCTCACT AACACATAGA chrX:5965708-5965828 64 2.30e-04 CGAGAGAAAA CTCTTTCT CCAGTAGCCA chr3L:13227731-13227851 105 2.60e-04 TTCAATTTTC CTCTCTGT TTATCTTT chr3R:13815121-13815241 92 2.60e-04 GAGCTTTTCA CGCTCTCA GCCAGCAGGT chr2R:6631479-6631599 70 2.92e-04 AGTAACTTTG CTCGCTCT CACACACACG chrX:3332636-3332756 60 2.92e-04 AATATGAAAT CTCGCTCT GTTTTTAACC chr2L:8542797-8542917 53 2.92e-04 TGAAGAGAGC CTCTCATT TTAAAATTTC chr3R:15419373-15419493 17 3.38e-04 CGTTGGCACT CTTTCTCT ATACGACATC chr3L:11428536-11428656 18 3.38e-04 AAGAGATCAG CTTTCTCT TGAGTGATCG chr2R:18401877-18401997 94 3.99e-04 CACAGCGAAA CTCTCTTA ATTTAAGAGA chr2R:24712887-24713007 70 3.99e-04 TCCTGGAAAT CTCTCACC AGCTCTCCGC chr3R:27580585-27580705 74 4.64e-04 gttgcctttg ctctatct tttgcttCAC chr2R:10225166-10225286 96 5.08e-04 AAATGAAAAA TTCTCTCG CAGCGACAAC chrX:6997430-6997550 81 5.39e-04 GGGATCTCTG TTCTCTCC ACGAAAAAGG chrX:5047185-5047305 4 6.31e-04 CTT CTCTCACA CATACAAACG chr3R:29691222-29691342 103 6.46e-04 GCGCAGCTGC CTCTTTCG CAGACGCGGC chr3R:4174508-4174628 73 6.46e-04 CTTTCGACGA CTCTTTCG TCGCGAGCAA chrX:9639194-9639314 1 7.11e-04 . CTCTCTGG CAACCCTAGT chr2L:19398084-19398204 82 8.45e-04 ACGTGAGAGA TGCTCTCG ATGCATCTGT chr3R:6780177-6780297 12 9.09e-04 CAACGTTATT TTCTCTCA AGCAGTTTCT chr2R:16104010-16104130 50 1.03e-03 GTGTTTATTG TTCTCTTG TTTGTGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28861363-28861483 1.6e-05 112_[+1] chr3L:1885485-1885605 1.6e-05 65_[+1]_47 chr2R:15349548-15349668 1.6e-05 18_[+1]_94 chrX:8518241-8518361 1.6e-05 54_[+1]_58 chr3R:20949253-20949373 1.6e-05 107_[+1]_5 chrX:1943390-1943510 1.6e-05 95_[+1]_17 chr3R:18063331-18063451 1.6e-05 54_[+1]_58 chrX:6013346-6013466 1.6e-05 20_[+1]_92 chr2R:10430487-10430607 1.6e-05 10_[+1]_102 chr3L:3545019-3545139 1.6e-05 75_[+1]_37 chr3R:5701220-5701340 1.6e-05 30_[+1]_82 chr2L:2451039-2451159 1.6e-05 80_[+1]_32 chrX:5047942-5048062 1.6e-05 109_[+1]_3 chr3L:16047253-16047373 1.6e-05 103_[+1]_9 chr2L:18845037-18845157 1.6e-05 86_[+1]_26 chrX:8215953-8216073 1.6e-05 97_[+1]_15 chrX:13747278-13747398 1.6e-05 32_[+1]_80 chr3L:1102494-1102614 1.6e-05 16_[+1]_96 chr2L:594799-594919 1.6e-05 103_[+1]_9 chr3L:17989466-17989586 1.6e-05 22_[+1]_90 chr3L:9466049-9466169 1.6e-05 [+1]_112 chrX:14212217-14212337 1.6e-05 95_[+1]_17 chrX:5770884-5771004 1.6e-05 44_[+1]_68 chr3L:18846268-18846388 1.6e-05 42_[+1]_70 chrX:5636582-5636702 1.6e-05 112_[+1] chrX:1964939-1965059 1.6e-05 75_[+1]_37 chr2R:12119091-12119211 1.6e-05 34_[+1]_78 chr2R:14041194-14041314 1.6e-05 14_[+1]_98 chr2L:13878112-13878232 1.6e-05 97_[+1]_15 chrX:7196104-7196224 1.6e-05 44_[+1]_68 chr3L:1098870-1098990 1.6e-05 36_[+1]_76 chrX:8215091-8215211 1.6e-05 26_[+1]_86 chr3L:2824859-2824979 1.6e-05 9_[+1]_103 chr2R:8272781-8272901 1.6e-05 23_[+1]_89 chr3R:17566966-17567086 1.6e-05 99_[+1]_13 chr2L:7249505-7249625 1.6e-05 75_[+1]_37 chr3R:25208358-25208478 1.6e-05 78_[+1]_34 chrX:395925-396045 1.6e-05 40_[+1]_72 chr2L:826510-826630 1.6e-05 98_[+1]_14 chrX:12007679-12007799 1.6e-05 85_[+1]_27 chrX:16526224-16526344 1.6e-05 70_[+1]_42 chr3R:5414296-5414416 1.6e-05 19_[+1]_93 chr3R:17557594-17557714 1.6e-05 50_[+1]_62 chrX:15163027-15163147 1.6e-05 76_[+1]_36 chr2R:19141956-19142076 1.6e-05 112_[+1] chr3L:21047470-21047590 1.6e-05 93_[+1]_19 chr2R:25114338-25114458 1.6e-05 96_[+1]_16 chr2R:18231251-18231371 1.6e-05 42_[+1]_70 chr3R:18849332-18849452 1.6e-05 87_[+1]_25 chr3L:6997556-6997676 1.6e-05 108_[+1]_4 chr3L:18792908-18793028 1.6e-05 96_[+1]_16 chr3R:11254563-11254683 1.6e-05 69_[+1]_43 chrX:10823599-10823719 1.6e-05 17_[+1]_95 chrX:15633505-15633625 1.6e-05 22_[+1]_90 chr3L:12804401-12804521 1.6e-05 103_[+1]_9 chr3R:17666163-17666283 1.6e-05 6_[+1]_106 chr2R:14959032-14959152 1.6e-05 101_[+1]_11 chr3L:21047895-21048015 1.6e-05 48_[+1]_64 chr2R:14715857-14715977 1.6e-05 95_[+1]_17 chr3R:30563613-30563733 3e-05 59_[+1]_53 chrX:16559523-16559643 3e-05 45_[+1]_67 chr3L:9694547-9694667 3e-05 38_[+1]_74 chr3L:19896459-19896579 3e-05 91_[+1]_21 chr2L:13550761-13550881 3e-05 31_[+1]_81 chr3L:11124054-11124174 3e-05 49_[+1]_63 chrX:3451388-3451508 3e-05 82_[+1]_30 chr3R:30389198-30389318 3e-05 32_[+1]_80 chrX:12546339-12546459 3e-05 34_[+1]_78 chr3R:22042670-22042790 3e-05 96_[+1]_16 chr3R:6405342-6405462 3e-05 109_[+1]_3 chr3L:2585912-2586032 3e-05 91_[+1]_21 chr2L:12854649-12854769 3e-05 47_[+1]_65 chr2R:13991754-13991874 3e-05 67_[+1]_45 chr2L:701975-702095 3e-05 87_[+1]_25 chr3R:22899119-22899239 3e-05 25_[+1]_87 chr2R:6828191-6828311 3e-05 50_[+1]_62 chr3L:14219738-14219858 3e-05 91_[+1]_21 chr3L:21598508-21598628 4.7e-05 55_[+1]_57 chr3L:15079485-15079605 4.7e-05 61_[+1]_51 chr3R:16449754-16449874 4.7e-05 19_[+1]_93 chr3L:22910336-22910456 4.7e-05 86_[+1]_26 chr2R:13502045-13502165 4.7e-05 10_[+1]_102 chrX:10309152-10309272 4.7e-05 21_[+1]_91 chr2L:14054431-14054551 4.7e-05 22_[+1]_90 chr3R:9534701-9534821 4.7e-05 100_[+1]_12 chr2L:7495527-7495647 4.7e-05 97_[+1]_15 chr2R:16499924-16500044 4.7e-05 6_[+1]_106 chrX:15076698-15076818 4.7e-05 102_[+1]_10 chr2R:5893629-5893749 4.7e-05 90_[+1]_22 chr2L:7245424-7245544 4.7e-05 107_[+1]_5 chr2R:20916558-20916678 6.2e-05 89_[+1]_23 chr3L:10680971-10681091 6.2e-05 50_[+1]_62 chr2L:3534252-3534372 6.2e-05 15_[+1]_97 chr2R:8862562-8862682 7.6e-05 75_[+1]_37 chr2R:17796099-17796219 7.6e-05 54_[+1]_58 chr2R:10219681-10219801 7.6e-05 74_[+1]_38 chr2L:3538992-3539112 9.2e-05 73_[+1]_39 chrX:6981799-6981919 9.2e-05 99_[+1]_13 chr2L:6252825-6252945 9.2e-05 87_[+1]_25 chr3L:10308050-10308170 9.2e-05 48_[+1]_64 chr3L:16029152-16029272 9.2e-05 100_[+1]_12 chr2L:15478336-15478456 0.00011 109_[+1]_3 chrX:16087608-16087728 0.00011 41_[+1]_71 chr3L:6943459-6943579 0.00011 109_[+1]_3 chr3R:23239195-23239315 0.00011 34_[+1]_78 chr2L:12505015-12505135 0.00011 110_[+1]_2 chr3R:4175239-4175359 0.00012 72_[+1]_40 chr2R:13622867-13622987 0.00012 72_[+1]_40 chr3L:1921046-1921166 0.00012 43_[+1]_69 chr2R:6196233-6196353 0.00012 52_[+1]_60 chr3L:21023439-21023559 0.00013 7_[+1]_105 chr2R:14768759-14768879 0.00013 31_[+1]_81 chr2R:21128032-21128152 0.00013 23_[+1]_89 chr2L:2242213-2242333 0.00013 93_[+1]_19 chr3R:30090390-30090510 0.00013 1_[+1]_111 chr2R:24736756-24736876 0.00013 33_[+1]_79 chr3L:3542673-3542793 0.00015 43_[+1]_69 chr2L:12975082-12975202 0.00018 45_[+1]_67 chr3L:11247946-11248066 0.00018 105_[+1]_7 chrX:2255120-2255240 0.00018 94_[+1]_18 chr2R:25285539-25285659 0.0002 48_[+1]_64 chr2L:12546102-12546222 0.0002 10_[+1]_102 chr2R:10798778-10798898 0.0002 46_[+1]_66 chrX:7697436-7697556 0.0002 98_[+1]_14 chr3L:18139223-18139343 0.00021 110_[+1]_2 chr3R:16899092-16899212 0.00021 90_[+1]_22 chrX:5965708-5965828 0.00023 63_[+1]_49 chr3L:13227731-13227851 0.00026 104_[+1]_8 chr3R:13815121-13815241 0.00026 91_[+1]_21 chr2R:6631479-6631599 0.00029 69_[+1]_43 chrX:3332636-3332756 0.00029 59_[+1]_53 chr2L:8542797-8542917 0.00029 52_[+1]_60 chr3R:15419373-15419493 0.00034 16_[+1]_96 chr3L:11428536-11428656 0.00034 17_[+1]_95 chr2R:18401877-18401997 0.0004 93_[+1]_19 chr2R:24712887-24713007 0.0004 69_[+1]_43 chr3R:27580585-27580705 0.00046 73_[+1]_39 chr2R:10225166-10225286 0.00051 95_[+1]_17 chrX:6997430-6997550 0.00054 80_[+1]_32 chrX:5047185-5047305 0.00063 3_[+1]_109 chr3R:29691222-29691342 0.00065 102_[+1]_10 chr3R:4174508-4174628 0.00065 72_[+1]_40 chrX:9639194-9639314 0.00071 [+1]_112 chr2L:19398084-19398204 0.00085 81_[+1]_31 chr3R:6780177-6780297 0.00091 11_[+1]_101 chr2R:16104010-16104130 0.001 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=146 chr3R:28861363-28861483 ( 113) CTCTCTCT 1 chr3L:1885485-1885605 ( 66) CTCTCTCT 1 chr2R:15349548-15349668 ( 19) CTCTCTCT 1 chrX:8518241-8518361 ( 55) CTCTCTCT 1 chr3R:20949253-20949373 ( 108) CTCTCTCT 1 chrX:1943390-1943510 ( 96) CTCTCTCT 1 chr3R:18063331-18063451 ( 55) CTCTCTCT 1 chrX:6013346-6013466 ( 21) CTCTCTCT 1 chr2R:10430487-10430607 ( 11) CTCTCTCT 1 chr3L:3545019-3545139 ( 76) CTCTCTCT 1 chr3R:5701220-5701340 ( 31) CTCTCTCT 1 chr2L:2451039-2451159 ( 81) CTCTCTCT 1 chrX:5047942-5048062 ( 110) CTCTCTCT 1 chr3L:16047253-16047373 ( 104) CTCTCTCT 1 chr2L:18845037-18845157 ( 87) CTCTCTCT 1 chrX:8215953-8216073 ( 98) CTCTCTCT 1 chrX:13747278-13747398 ( 33) CTCTCTCT 1 chr3L:1102494-1102614 ( 17) CTCTCTCT 1 chr2L:594799-594919 ( 104) CTCTCTCT 1 chr3L:17989466-17989586 ( 23) CTCTCTCT 1 chr3L:9466049-9466169 ( 1) CTCTCTCT 1 chrX:14212217-14212337 ( 96) CTCTCTCT 1 chrX:5770884-5771004 ( 45) CTCTCTCT 1 chr3L:18846268-18846388 ( 43) CTCTCTCT 1 chrX:5636582-5636702 ( 113) CTCTCTCT 1 chrX:1964939-1965059 ( 76) CTCTCTCT 1 chr2R:12119091-12119211 ( 35) CTCTCTCT 1 chr2R:14041194-14041314 ( 15) CTCTCTCT 1 chr2L:13878112-13878232 ( 98) CTCTCTCT 1 chrX:7196104-7196224 ( 45) CTCTCTCT 1 chr3L:1098870-1098990 ( 37) CTCTCTCT 1 chrX:8215091-8215211 ( 27) CTCTCTCT 1 chr3L:2824859-2824979 ( 10) CTCTCTCT 1 chr2R:8272781-8272901 ( 24) CTCTCTCT 1 chr3R:17566966-17567086 ( 100) CTCTCTCT 1 chr2L:7249505-7249625 ( 76) CTCTCTCT 1 chr3R:25208358-25208478 ( 79) CTCTCTCT 1 chrX:395925-396045 ( 41) CTCTCTCT 1 chr2L:826510-826630 ( 99) CTCTCTCT 1 chrX:12007679-12007799 ( 86) CTCTCTCT 1 chrX:16526224-16526344 ( 71) CTCTCTCT 1 chr3R:5414296-5414416 ( 20) CTCTCTCT 1 chr3R:17557594-17557714 ( 51) CTCTCTCT 1 chrX:15163027-15163147 ( 77) CTCTCTCT 1 chr2R:19141956-19142076 ( 113) CTCTCTCT 1 chr3L:21047470-21047590 ( 94) CTCTCTCT 1 chr2R:25114338-25114458 ( 97) CTCTCTCT 1 chr2R:18231251-18231371 ( 43) CTCTCTCT 1 chr3R:18849332-18849452 ( 88) CTCTCTCT 1 chr3L:6997556-6997676 ( 109) CTCTCTCT 1 chr3L:18792908-18793028 ( 97) CTCTCTCT 1 chr3R:11254563-11254683 ( 70) CTCTCTCT 1 chrX:10823599-10823719 ( 18) CTCTCTCT 1 chrX:15633505-15633625 ( 23) CTCTCTCT 1 chr3L:12804401-12804521 ( 104) CTCTCTCT 1 chr3R:17666163-17666283 ( 7) CTCTCTCT 1 chr2R:14959032-14959152 ( 102) CTCTCTCT 1 chr3L:21047895-21048015 ( 49) CTCTCTCT 1 chr2R:14715857-14715977 ( 96) CTCTCTCT 1 chr3R:30563613-30563733 ( 60) CGCTCTCT 1 chrX:16559523-16559643 ( 46) CGCTCTCT 1 chr3L:9694547-9694667 ( 39) CGCTCTCT 1 chr3L:19896459-19896579 ( 92) CGCTCTCT 1 chr2L:13550761-13550881 ( 32) CGCTCTCT 1 chr3L:11124054-11124174 ( 50) CGCTCTCT 1 chrX:3451388-3451508 ( 83) CGCTCTCT 1 chr3R:30389198-30389318 ( 33) CGCTCTCT 1 chrX:12546339-12546459 ( 35) CGCTCTCT 1 chr3R:22042670-22042790 ( 97) CGCTCTCT 1 chr3R:6405342-6405462 ( 110) CGCTCTCT 1 chr3L:2585912-2586032 ( 92) CGCTCTCT 1 chr2L:12854649-12854769 ( 48) CGCTCTCT 1 chr2R:13991754-13991874 ( 68) CGCTCTCT 1 chr2L:701975-702095 ( 88) CGCTCTCT 1 chr3R:22899119-22899239 ( 26) CGCTCTCT 1 chr2R:6828191-6828311 ( 51) CGCTCTCT 1 chr3L:14219738-14219858 ( 92) CGCTCTCT 1 chr3L:21598508-21598628 ( 56) CTCTCTTT 1 chr3L:15079485-15079605 ( 62) CTCTCTTT 1 chr3R:16449754-16449874 ( 20) CTCTCTTT 1 chr3L:22910336-22910456 ( 87) CTCTCTTT 1 chr2R:13502045-13502165 ( 11) CTCTCTTT 1 chrX:10309152-10309272 ( 22) CTCTCTTT 1 chr2L:14054431-14054551 ( 23) CTCTCTTT 1 chr3R:9534701-9534821 ( 101) CTCTCTTT 1 chr2L:7495527-7495647 ( 98) CTCTCTTT 1 chr2R:16499924-16500044 ( 7) CTCTCTTT 1 chrX:15076698-15076818 ( 103) CTCTCTTT 1 chr2R:5893629-5893749 ( 91) CTCTCTTT 1 chr2L:7245424-7245544 ( 108) CTCTCTTT 1 chr2R:20916558-20916678 ( 90) CTCTCTCG 1 chr3L:10680971-10681091 ( 51) CTCTCTCG 1 chr2L:3534252-3534372 ( 16) CTCTCTCG 1 chr2R:8862562-8862682 ( 76) CTCTCTCC 1 chr2R:17796099-17796219 ( 55) CTCTCTCC 1 chr2R:10219681-10219801 ( 75) CTCTCTCC 1 chr2L:3538992-3539112 ( 74) CGCTCTTT 1 chrX:6981799-6981919 ( 100) CGCTCTTT 1 chr2L:6252825-6252945 ( 88) CGCTCTTT 1 chr3L:10308050-10308170 ( 49) CGCTCTTT 1 chr3L:16029152-16029272 ( 101) CGCTCTTT 1 chr2L:15478336-15478456 ( 110) CTCTCACT 1 chrX:16087608-16087728 ( 42) CTCTCACT 1 chr3L:6943459-6943579 ( 110) CTCTCACT 1 chr3R:23239195-23239315 ( 35) CTCTCACT 1 chr2L:12505015-12505135 ( 111) CTCTCACT 1 chr3R:4175239-4175359 ( 73) CGCTCTCG 1 chr2R:13622867-13622987 ( 73) CGCTCTCG 1 chr3L:1921046-1921166 ( 44) CGCTCTCG 1 chr2R:6196233-6196353 ( 53) CGCTCTCG 1 chr3L:21023439-21023559 ( 8) CGCTCTCC 1 chr2R:14768759-14768879 ( 32) CGCTCTCC 1 chr2R:21128032-21128152 ( 24) CGCTCTCC 1 chr2L:2242213-2242333 ( 94) CGCTCTCC 1 chr3R:30090390-30090510 ( 2) CGCTCTCC 1 chr2R:24736756-24736876 ( 34) CGCTCTCC 1 chr3L:3542673-3542793 ( 44) CTCTCTCA 1 chr2L:12975082-12975202 ( 46) CTCTCTTG 1 chr3L:11247946-11248066 ( 106) CTCTCTTG 1 chrX:2255120-2255240 ( 95) CTCTCTTG 1 chr2R:25285539-25285659 ( 49) CTCTCTTC 1 chr2L:12546102-12546222 ( 11) CTCTCTTC 1 chr2R:10798778-10798898 ( 47) CTCTCTTC 1 chrX:7697436-7697556 ( 99) CTCTCTTC 1 chr3L:18139223-18139343 ( 111) CGCTCACT 1 chr3R:16899092-16899212 ( 91) CGCTCACT 1 chrX:5965708-5965828 ( 64) CTCTTTCT 1 chr3L:13227731-13227851 ( 105) CTCTCTGT 1 chr3R:13815121-13815241 ( 92) CGCTCTCA 1 chr2R:6631479-6631599 ( 70) CTCGCTCT 1 chrX:3332636-3332756 ( 60) CTCGCTCT 1 chr2L:8542797-8542917 ( 53) CTCTCATT 1 chr3R:15419373-15419493 ( 17) CTTTCTCT 1 chr3L:11428536-11428656 ( 18) CTTTCTCT 1 chr2R:18401877-18401997 ( 94) CTCTCTTA 1 chr2R:24712887-24713007 ( 70) CTCTCACC 1 chr3R:27580585-27580705 ( 74) CTCTATCT 1 chr2R:10225166-10225286 ( 96) TTCTCTCG 1 chrX:6997430-6997550 ( 81) TTCTCTCC 1 chrX:5047185-5047305 ( 4) CTCTCACA 1 chr3R:29691222-29691342 ( 103) CTCTTTCG 1 chr3R:4174508-4174628 ( 73) CTCTTTCG 1 chrX:9639194-9639314 ( 1) CTCTCTGG 1 chr2L:19398084-19398204 ( 82) TGCTCTCG 1 chr3R:6780177-6780297 ( 12) TTCTCTCA 1 chr2R:16104010-16104130 ( 50) TTCTCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.45273 E= 6.7e-142 -1383 200 -1383 -293 -1383 -1383 11 152 -1383 203 -1383 -425 -1383 -1383 -409 192 -526 201 -1383 -366 -194 -1383 -1383 184 -1383 172 -409 -44 -294 -123 -109 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 146 E= 6.7e-142 0.000000 0.965753 0.000000 0.034247 0.000000 0.000000 0.253425 0.746575 0.000000 0.986301 0.000000 0.013699 0.000000 0.000000 0.013699 0.986301 0.006849 0.972603 0.000000 0.020548 0.068493 0.000000 0.000000 0.931507 0.000000 0.794521 0.013699 0.191781 0.034247 0.102740 0.109589 0.753425 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- C[TG]CTCTCT -------------------------------------------------------------------------------- Time 7.71 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAG MEME-2 width = 8 sites = 121 llr = 1102 E-value = 6.8e-135 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 81a:a:71 pos.-specific C 1:::::3: probability G 19:a:a:9 matrix T :::::::: bits 2.1 * * 1.9 **** 1.7 **** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.0 ******* (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12985768-12985888 7 1.46e-05 CGGCGA AGAGAGAG GGAGCAGAAC chrX:1943390-1943510 6 1.46e-05 GCCAA AGAGAGAG GCAAAGAGAG chr3L:21025684-21025804 79 1.46e-05 GAGCAAGCAG AGAGAGAG AGCGACTCAG chrX:1975978-1976098 77 1.46e-05 ggagagagag agagagag agCGCGCTCA chr2L:8031732-8031852 69 1.46e-05 AAagaggaag agagagag atagagagtg chrX:8058885-8059005 81 1.46e-05 ACAGCTaggg agagagag agtgagagag chrX:5047942-5048062 40 1.46e-05 agagagacag agagagag CGCGAAACTG chr3R:29691222-29691342 79 1.46e-05 TCagagagag agagagag agGCGCGCGC chr2L:8544065-8544185 88 1.46e-05 AAATTGACTC agagagag tgagagtaag chrX:5047185-5047305 62 1.46e-05 agctggtgaa agagagag agagagaatg chrX:2789867-2789987 83 1.46e-05 gataagagag agagagag agaACTAGTT chr3L:15507599-15507719 85 1.46e-05 agatatatag agagagag agagagagaa chr3L:11046692-11046812 85 1.46e-05 agagagagag agagagag CGCTTGTCAA chr2L:17752632-17752752 42 1.46e-05 GGGCGCagag agagagag agagaaagTT chr2L:19398084-19398204 14 1.46e-05 agagagagag agagagag gaagagagag chrX:8057921-8058041 38 1.46e-05 Ggagagaggg agagagag cgagcgtgag chrX:10209726-10209846 89 1.46e-05 gaagagattg agagagag agagggagTG chr2L:2242213-2242333 2 1.46e-05 g agagagag agagagagag chr3R:9866093-9866213 111 1.46e-05 ggagagagag agagagag gg chr2R:17794196-17794316 65 1.46e-05 cgccacaggg agagagag agagagagag chrX:6353093-6353213 48 1.46e-05 TGGTCGAGCA AGAGAGAG CAGAGAAAAA chr2R:13622867-13622987 5 1.46e-05 AAAA agagagag aatgtgagag chr3R:17776445-17776565 12 1.46e-05 ggatagtgga agagagag agagagagag chrX:11372836-11372956 85 1.46e-05 agagagagtg agagagag agagagagGT chrX:6988990-6989110 77 1.46e-05 agagagagag agagagag agagagagCA chr2R:10798778-10798898 23 1.46e-05 CGACGCGAGA AGAGAGAG TTTCCCTCTC chr3L:5277188-5277308 30 1.46e-05 gaaagagagt agagagag agagaacaaa chr3L:1921046-1921166 81 1.46e-05 agaggaagag agagagag agCAGGATGT chr3R:25184678-25184798 79 1.46e-05 AGAGGGAGCG AGAGAGAG CGACTCACGC chr3R:10638864-10638984 28 1.46e-05 ATGTCACGCC AGAGAGAG TAAGGGAGAG chr2L:14054431-14054551 10 1.46e-05 gtgcagaag agagagag agCTGCTCTC chr3L:18787950-18788070 70 1.46e-05 agagagagag agagagag agagagaACT chr2R:18232612-18232732 75 1.46e-05 AAAGAAAGAG AGAGAGAG AGCGACTTGT chrX:4508181-4508301 94 1.46e-05 agggagagcg agagagag TGAGTGCAAA chr2R:21843177-21843297 41 1.46e-05 GGCAagagag agagagag agagagagag chr3L:13993477-13993597 89 1.46e-05 agagaaggga agagagag ccgagagaga chr2L:12545838-12545958 42 1.46e-05 agagatggag agagagag agagGAATTA chr3L:4363641-4363761 5 1.46e-05 gagg agagagag ggagcgatag chr2R:16583522-16583642 36 1.46e-05 cgacagagag agagagag agagagagaT chrX:1234262-1234382 4 1.46e-05 GAA AGAGAGAG CCGCTGCTGT chr3R:15664880-15665000 30 1.46e-05 ATTgagcgag agagagag agagtgagcg chrX:16089414-16089534 50 1.46e-05 agatagagag agagagag gaaaagagag chr2R:19141956-19142076 18 1.46e-05 TCGCGTCGAC AGAGAGAG CCGAGAAAAA chr2R:7146985-7147105 42 1.46e-05 AGAATAGAGG AGAGAGAG CGCACTGGAG chr2L:701975-702095 42 1.46e-05 GCagagagag agagagag agagagaaga chrX:5965708-5965828 32 1.46e-05 CTCTTCTGCC AGAGAGAG GACGAGAGTA chr2R:6828191-6828311 83 1.46e-05 agagagacag agagagag agagagagcg chr2R:10225166-10225286 5 1.46e-05 aaag agagagag CGGGAAATTT chr3R:31621926-31622046 70 1.46e-05 aaagtccgag agagagag cgcgggagag chr2R:14713665-14713785 38 1.46e-05 TGAGAGTGAG AGAGAGAG TGCGGAAATG chr3R:13815121-13815241 40 1.46e-05 AGAGAGGGGC AGAGAGAG CGCTAGCTCG chrX:17651379-17651499 43 1.46e-05 AGTGGAAAGT AGAGAGAG CGCGTGGGTG chr2R:24712887-24713007 1 1.46e-05 . agagagag GGCGTCCTCA chr2R:19411413-19411533 32 1.46e-05 TGCAACCAAT AGAGAGAG ATATGGAATG chr3L:7808928-7809048 46 2.79e-05 AGAGTGGCAA AGAGAGCG CAGAAATGGA chr2L:12655868-12655988 27 2.79e-05 ATGCGCCGCA AGAGAGCG CCAAAGCTCC chr3L:15079485-15079605 7 2.79e-05 CGGCGG AGAGAGCG CATGGGATCG chr3R:27580585-27580705 28 2.79e-05 GTAAAAGGTG AGAGAGCG CAGCTGTTTT chr3R:25472705-25472825 44 2.79e-05 AGAAAGAGAC AGAGAGCG ATAACAAATT chr3L:16047253-16047373 44 2.79e-05 TCCTCCTGCA AGAGAGCG AAGAGCATGC chr3L:20295242-20295362 52 2.79e-05 GACTGCGCCG AGAGAGCG GGCGAGAGAC chr3R:4174508-4174628 19 2.79e-05 TCGATCGGGC AGAGAGCG AGAAATGGTA chr2R:9440857-9440977 44 2.79e-05 AGCCGGAGAT AGAGAGCG CGAGCTCCGA chr2L:16520622-16520742 40 2.79e-05 GACACGCGAA AGAGAGCG CACGAAGAAT chr4:960186-960306 111 2.79e-05 ttcgagagcg agagagcg ga chrX:5340099-5340219 40 2.79e-05 agaaagcggg agagagcg actgggcgac chr3L:9695460-9695580 66 2.79e-05 AGAGAGCGCA AGAGAGCG CCAAGGATGG chrX:19718491-19718611 39 2.79e-05 TATGCGTGCA AGAGAGCG ACCCAGAGCG chr3L:10308050-10308170 30 2.79e-05 CACACAAAAC AGAGAGCG CTACTCCGGC chr3R:15476430-15476550 72 2.79e-05 TTCTCTGCGC AGAGAGCG CTGTGGCGAA chr3R:4739013-4739133 31 2.79e-05 GCGGAAACGC agagagcg aaagagcgaa chrX:16526224-16526344 19 2.79e-05 TGGGCTGGCG AGAGAGCG AGGACTCTCA chr3R:11760149-11760269 33 2.79e-05 cggcgagcga agagagcg gccgaaacga chrX:17710914-17711034 44 2.79e-05 AGCGCTCGAC AGAGAGCG CGCGAGAGAA chr3R:17920443-17920563 3 2.79e-05 AA AGAGAGCG AGAGGAAGAA chr2R:6631479-6631599 107 4.13e-05 GCATCGAGTC CGAGAGAG TGCGCA chr3L:26012678-26012798 14 4.13e-05 aacaaaaatt cgagagag cctggagcca chr3L:1102494-1102614 29 4.13e-05 CTCTCTTTCG CGAGAGAG TTGGCTGGCG chr2R:8862562-8862682 54 4.13e-05 AACAGCCGAA CGAGAGAG TGCGAGAAAA chr3L:13227731-13227851 71 4.13e-05 TATCTAAGAG CGAGAGAG TGGTGCCGGT chr2L:12975082-12975202 7 4.13e-05 GGAGAG CGAGAGAG CCAGAGCGGA chr2R:16499924-16500044 33 4.13e-05 AATCATGGTG CGAGAGAG GGTGTGCGAA chr3L:9694547-9694667 6 7.06e-05 GCGTA AAAGAGAG CAACGAAGCT chr3L:21644713-21644833 93 7.06e-05 CACAGTATGC GGAGAGAG CCGATCTCGA chrX:6997430-6997550 2 7.06e-05 C GGAGAGAG GGAGAGCGCT chrX:3451388-3451508 17 7.06e-05 GGCGAAGAGA AAAGAGAG AAAAACTTCG chr3R:16719962-16720082 36 7.06e-05 CAGGTGAGCG AAAGAGAG GAGCCAGATA chr2L:6252825-6252945 77 7.06e-05 GCCAATGATG AAAGAGAG TGGCGCTCTT chr3L:872153-872273 9 7.06e-05 AGAGAGCA GGAGAGAG ATTGCCGCAC chr3L:15090413-15090533 56 7.06e-05 GGAGAGTCCA AAAGAGAG AATTCAATGT chr3R:17557594-17557714 22 7.06e-05 CCACGCCCCC AAAGAGAG TGCTCTCTCC chr3R:22899119-22899239 6 7.06e-05 AACTG GGAGAGAG CCAGCCATCT chr3R:16899092-16899212 56 7.06e-05 AAATATAAGC AAAGAGAG TTGGAAAGAG chr3L:11428536-11428656 69 7.06e-05 AATTGAAAAA AAAGAGAG CAACAATTTC chrX:5770884-5771004 103 8.70e-05 CGCGAGAGGC AGAGAGAA TGCATGGCCC chr3R:19225758-19225878 111 8.70e-05 ACACGCGACC AGAGAGAA AT chr2L:23512804-23512924 65 8.70e-05 agagaagaga agagagaa gagagaagag chrY:124303-124423 51 8.70e-05 agaagagaga agagagaa gagaagagaa chrX:9639194-9639314 69 9.93e-05 AAAGTAAACG CGAGAGCG AAGGTGAGAG chr2R:8985613-8985733 64 9.93e-05 TCAAGAGAGC CGAGAGCG GTGCGGTACG chr2L:3545398-3545518 69 9.93e-05 CCCCATTTGC CGAGAGCG GGAGCACCCA chr2L:15332690-15332810 39 9.93e-05 GAGAAAATTT CGAGAGCG AAACAGAAAC chrX:14082849-14082969 34 9.93e-05 TGGCACGATG CGAGAGCG GGAGCTTAAA chr2L:3534252-3534372 59 1.26e-04 GACAGAAAGA AAAGAGCG AATGAGATGG chr3L:11124054-11124174 24 1.26e-04 CAGAAGGTGA AAAGAGCG AGAGGATGCG chrX:14212217-14212337 9 1.26e-04 AACTTAAC GGAGAGCG ATATTATTTA chr2R:24736756-24736876 23 1.26e-04 AGCTGACAAA GGAGAGCG GCGCGCTCTC chr3L:15329677-15329797 48 1.26e-04 ATAGTGAGGG GGAGAGCG AAAAGAGAAA chrX:15076698-15076818 56 1.41e-04 TTCGCTGCGA AGAGAGCA GAGCGCCAAA chr3L:16029152-16029272 28 1.41e-04 CGGCGCAAAC AGAGAGCA GCATCTTTTC chr3L:3542673-3542793 31 1.56e-04 TCAAGTTATT TGAGAGAG TTGTGCTCTC chrX:6981799-6981919 76 1.56e-04 AAAAATGAGC TGAGAGAG TTTCTGTTTT chr3R:30090390-30090510 106 1.71e-04 GCCGCATGCT CAAGAGAG ATTTGTG chr3L:1098870-1098990 8 1.85e-04 AGCAGCA GAAGAGAG CTCCACCGCG chr2L:8542797-8542917 44 1.85e-04 AGGGCTTATT GAAGAGAG CCTCTCATTT chrX:12546339-12546459 88 1.98e-04 tACCGCTTGG TGAGAGCG GAAAGTACCG chr3L:11247946-11248066 72 2.47e-04 AATTTTTGCT AAAGAGAA CTTAAGAGCG chr2L:12854649-12854769 97 2.47e-04 GGAAACGAAG AAAGAGAA TTTCGACGCA chrX:5636582-5636702 64 3.18e-04 TGTTTGACTT GGAGAGCA TCCCTATATA chr2R:18401877-18401997 23 3.18e-04 CTGATAACTA AAAGAGCA CGGAAATATT chr3R:5414296-5414416 94 3.18e-04 CCTCagcaga ggagagca gggcagagga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12985768-12985888 1.5e-05 6_[+2]_106 chrX:1943390-1943510 1.5e-05 5_[+2]_107 chr3L:21025684-21025804 1.5e-05 78_[+2]_34 chrX:1975978-1976098 1.5e-05 76_[+2]_36 chr2L:8031732-8031852 1.5e-05 68_[+2]_44 chrX:8058885-8059005 1.5e-05 80_[+2]_32 chrX:5047942-5048062 1.5e-05 39_[+2]_73 chr3R:29691222-29691342 1.5e-05 78_[+2]_34 chr2L:8544065-8544185 1.5e-05 87_[+2]_25 chrX:5047185-5047305 1.5e-05 61_[+2]_51 chrX:2789867-2789987 1.5e-05 82_[+2]_30 chr3L:15507599-15507719 1.5e-05 84_[+2]_28 chr3L:11046692-11046812 1.5e-05 84_[+2]_28 chr2L:17752632-17752752 1.5e-05 41_[+2]_71 chr2L:19398084-19398204 1.5e-05 13_[+2]_99 chrX:8057921-8058041 1.5e-05 37_[+2]_75 chrX:10209726-10209846 1.5e-05 88_[+2]_24 chr2L:2242213-2242333 1.5e-05 1_[+2]_111 chr3R:9866093-9866213 1.5e-05 110_[+2]_2 chr2R:17794196-17794316 1.5e-05 64_[+2]_48 chrX:6353093-6353213 1.5e-05 47_[+2]_65 chr2R:13622867-13622987 1.5e-05 4_[+2]_108 chr3R:17776445-17776565 1.5e-05 11_[+2]_101 chrX:11372836-11372956 1.5e-05 84_[+2]_28 chrX:6988990-6989110 1.5e-05 76_[+2]_36 chr2R:10798778-10798898 1.5e-05 22_[+2]_90 chr3L:5277188-5277308 1.5e-05 29_[+2]_83 chr3L:1921046-1921166 1.5e-05 80_[+2]_32 chr3R:25184678-25184798 1.5e-05 78_[+2]_34 chr3R:10638864-10638984 1.5e-05 27_[+2]_85 chr2L:14054431-14054551 1.5e-05 9_[+2]_103 chr3L:18787950-18788070 1.5e-05 69_[+2]_43 chr2R:18232612-18232732 1.5e-05 74_[+2]_38 chrX:4508181-4508301 1.5e-05 93_[+2]_19 chr2R:21843177-21843297 1.5e-05 40_[+2]_72 chr3L:13993477-13993597 1.5e-05 88_[+2]_24 chr2L:12545838-12545958 1.5e-05 41_[+2]_71 chr3L:4363641-4363761 1.5e-05 4_[+2]_108 chr2R:16583522-16583642 1.5e-05 35_[+2]_77 chrX:1234262-1234382 1.5e-05 3_[+2]_109 chr3R:15664880-15665000 1.5e-05 29_[+2]_83 chrX:16089414-16089534 1.5e-05 49_[+2]_63 chr2R:19141956-19142076 1.5e-05 17_[+2]_95 chr2R:7146985-7147105 1.5e-05 41_[+2]_71 chr2L:701975-702095 1.5e-05 41_[+2]_71 chrX:5965708-5965828 1.5e-05 31_[+2]_81 chr2R:6828191-6828311 1.5e-05 82_[+2]_30 chr2R:10225166-10225286 1.5e-05 4_[+2]_108 chr3R:31621926-31622046 1.5e-05 69_[+2]_43 chr2R:14713665-14713785 1.5e-05 37_[+2]_75 chr3R:13815121-13815241 1.5e-05 39_[+2]_73 chrX:17651379-17651499 1.5e-05 42_[+2]_70 chr2R:24712887-24713007 1.5e-05 [+2]_112 chr2R:19411413-19411533 1.5e-05 31_[+2]_81 chr3L:7808928-7809048 2.8e-05 45_[+2]_67 chr2L:12655868-12655988 2.8e-05 26_[+2]_86 chr3L:15079485-15079605 2.8e-05 6_[+2]_106 chr3R:27580585-27580705 2.8e-05 27_[+2]_85 chr3R:25472705-25472825 2.8e-05 43_[+2]_69 chr3L:16047253-16047373 2.8e-05 43_[+2]_69 chr3L:20295242-20295362 2.8e-05 51_[+2]_61 chr3R:4174508-4174628 2.8e-05 18_[+2]_94 chr2R:9440857-9440977 2.8e-05 43_[+2]_69 chr2L:16520622-16520742 2.8e-05 39_[+2]_73 chr4:960186-960306 2.8e-05 110_[+2]_2 chrX:5340099-5340219 2.8e-05 39_[+2]_73 chr3L:9695460-9695580 2.8e-05 65_[+2]_47 chrX:19718491-19718611 2.8e-05 38_[+2]_74 chr3L:10308050-10308170 2.8e-05 29_[+2]_83 chr3R:15476430-15476550 2.8e-05 71_[+2]_41 chr3R:4739013-4739133 2.8e-05 30_[+2]_82 chrX:16526224-16526344 2.8e-05 18_[+2]_94 chr3R:11760149-11760269 2.8e-05 32_[+2]_80 chrX:17710914-17711034 2.8e-05 43_[+2]_69 chr3R:17920443-17920563 2.8e-05 2_[+2]_110 chr2R:6631479-6631599 4.1e-05 106_[+2]_6 chr3L:26012678-26012798 4.1e-05 13_[+2]_99 chr3L:1102494-1102614 4.1e-05 28_[+2]_84 chr2R:8862562-8862682 4.1e-05 53_[+2]_59 chr3L:13227731-13227851 4.1e-05 70_[+2]_42 chr2L:12975082-12975202 4.1e-05 6_[+2]_106 chr2R:16499924-16500044 4.1e-05 32_[+2]_80 chr3L:9694547-9694667 7.1e-05 5_[+2]_107 chr3L:21644713-21644833 7.1e-05 92_[+2]_20 chrX:6997430-6997550 7.1e-05 1_[+2]_111 chrX:3451388-3451508 7.1e-05 16_[+2]_96 chr3R:16719962-16720082 7.1e-05 35_[+2]_77 chr2L:6252825-6252945 7.1e-05 76_[+2]_36 chr3L:872153-872273 7.1e-05 8_[+2]_104 chr3L:15090413-15090533 7.1e-05 55_[+2]_57 chr3R:17557594-17557714 7.1e-05 21_[+2]_91 chr3R:22899119-22899239 7.1e-05 5_[+2]_107 chr3R:16899092-16899212 7.1e-05 55_[+2]_57 chr3L:11428536-11428656 7.1e-05 68_[+2]_44 chrX:5770884-5771004 8.7e-05 102_[+2]_10 chr3R:19225758-19225878 8.7e-05 110_[+2]_2 chr2L:23512804-23512924 8.7e-05 64_[+2]_48 chrY:124303-124423 8.7e-05 50_[+2]_62 chrX:9639194-9639314 9.9e-05 68_[+2]_44 chr2R:8985613-8985733 9.9e-05 63_[+2]_49 chr2L:3545398-3545518 9.9e-05 68_[+2]_44 chr2L:15332690-15332810 9.9e-05 38_[+2]_74 chrX:14082849-14082969 9.9e-05 33_[+2]_79 chr2L:3534252-3534372 0.00013 58_[+2]_54 chr3L:11124054-11124174 0.00013 23_[+2]_89 chrX:14212217-14212337 0.00013 8_[+2]_104 chr2R:24736756-24736876 0.00013 22_[+2]_90 chr3L:15329677-15329797 0.00013 47_[+2]_65 chrX:15076698-15076818 0.00014 55_[+2]_57 chr3L:16029152-16029272 0.00014 27_[+2]_85 chr3L:3542673-3542793 0.00016 30_[+2]_82 chrX:6981799-6981919 0.00016 75_[+2]_37 chr3R:30090390-30090510 0.00017 105_[+2]_7 chr3L:1098870-1098990 0.00019 7_[+2]_105 chr2L:8542797-8542917 0.00019 43_[+2]_69 chrX:12546339-12546459 0.0002 87_[+2]_25 chr3L:11247946-11248066 0.00025 71_[+2]_41 chr2L:12854649-12854769 0.00025 96_[+2]_16 chrX:5636582-5636702 0.00032 63_[+2]_49 chr2R:18401877-18401997 0.00032 22_[+2]_90 chr3R:5414296-5414416 0.00032 93_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAG width=8 seqs=121 chr2R:12985768-12985888 ( 7) AGAGAGAG 1 chrX:1943390-1943510 ( 6) AGAGAGAG 1 chr3L:21025684-21025804 ( 79) AGAGAGAG 1 chrX:1975978-1976098 ( 77) AGAGAGAG 1 chr2L:8031732-8031852 ( 69) AGAGAGAG 1 chrX:8058885-8059005 ( 81) AGAGAGAG 1 chrX:5047942-5048062 ( 40) AGAGAGAG 1 chr3R:29691222-29691342 ( 79) AGAGAGAG 1 chr2L:8544065-8544185 ( 88) AGAGAGAG 1 chrX:5047185-5047305 ( 62) AGAGAGAG 1 chrX:2789867-2789987 ( 83) AGAGAGAG 1 chr3L:15507599-15507719 ( 85) AGAGAGAG 1 chr3L:11046692-11046812 ( 85) AGAGAGAG 1 chr2L:17752632-17752752 ( 42) AGAGAGAG 1 chr2L:19398084-19398204 ( 14) AGAGAGAG 1 chrX:8057921-8058041 ( 38) AGAGAGAG 1 chrX:10209726-10209846 ( 89) AGAGAGAG 1 chr2L:2242213-2242333 ( 2) AGAGAGAG 1 chr3R:9866093-9866213 ( 111) AGAGAGAG 1 chr2R:17794196-17794316 ( 65) AGAGAGAG 1 chrX:6353093-6353213 ( 48) AGAGAGAG 1 chr2R:13622867-13622987 ( 5) AGAGAGAG 1 chr3R:17776445-17776565 ( 12) AGAGAGAG 1 chrX:11372836-11372956 ( 85) AGAGAGAG 1 chrX:6988990-6989110 ( 77) AGAGAGAG 1 chr2R:10798778-10798898 ( 23) AGAGAGAG 1 chr3L:5277188-5277308 ( 30) AGAGAGAG 1 chr3L:1921046-1921166 ( 81) AGAGAGAG 1 chr3R:25184678-25184798 ( 79) AGAGAGAG 1 chr3R:10638864-10638984 ( 28) AGAGAGAG 1 chr2L:14054431-14054551 ( 10) AGAGAGAG 1 chr3L:18787950-18788070 ( 70) AGAGAGAG 1 chr2R:18232612-18232732 ( 75) AGAGAGAG 1 chrX:4508181-4508301 ( 94) AGAGAGAG 1 chr2R:21843177-21843297 ( 41) AGAGAGAG 1 chr3L:13993477-13993597 ( 89) AGAGAGAG 1 chr2L:12545838-12545958 ( 42) AGAGAGAG 1 chr3L:4363641-4363761 ( 5) AGAGAGAG 1 chr2R:16583522-16583642 ( 36) AGAGAGAG 1 chrX:1234262-1234382 ( 4) AGAGAGAG 1 chr3R:15664880-15665000 ( 30) AGAGAGAG 1 chrX:16089414-16089534 ( 50) AGAGAGAG 1 chr2R:19141956-19142076 ( 18) AGAGAGAG 1 chr2R:7146985-7147105 ( 42) AGAGAGAG 1 chr2L:701975-702095 ( 42) AGAGAGAG 1 chrX:5965708-5965828 ( 32) AGAGAGAG 1 chr2R:6828191-6828311 ( 83) AGAGAGAG 1 chr2R:10225166-10225286 ( 5) AGAGAGAG 1 chr3R:31621926-31622046 ( 70) AGAGAGAG 1 chr2R:14713665-14713785 ( 38) AGAGAGAG 1 chr3R:13815121-13815241 ( 40) AGAGAGAG 1 chrX:17651379-17651499 ( 43) AGAGAGAG 1 chr2R:24712887-24713007 ( 1) AGAGAGAG 1 chr2R:19411413-19411533 ( 32) AGAGAGAG 1 chr3L:7808928-7809048 ( 46) AGAGAGCG 1 chr2L:12655868-12655988 ( 27) AGAGAGCG 1 chr3L:15079485-15079605 ( 7) AGAGAGCG 1 chr3R:27580585-27580705 ( 28) AGAGAGCG 1 chr3R:25472705-25472825 ( 44) AGAGAGCG 1 chr3L:16047253-16047373 ( 44) AGAGAGCG 1 chr3L:20295242-20295362 ( 52) AGAGAGCG 1 chr3R:4174508-4174628 ( 19) AGAGAGCG 1 chr2R:9440857-9440977 ( 44) AGAGAGCG 1 chr2L:16520622-16520742 ( 40) AGAGAGCG 1 chr4:960186-960306 ( 111) AGAGAGCG 1 chrX:5340099-5340219 ( 40) AGAGAGCG 1 chr3L:9695460-9695580 ( 66) AGAGAGCG 1 chrX:19718491-19718611 ( 39) AGAGAGCG 1 chr3L:10308050-10308170 ( 30) AGAGAGCG 1 chr3R:15476430-15476550 ( 72) AGAGAGCG 1 chr3R:4739013-4739133 ( 31) AGAGAGCG 1 chrX:16526224-16526344 ( 19) AGAGAGCG 1 chr3R:11760149-11760269 ( 33) AGAGAGCG 1 chrX:17710914-17711034 ( 44) AGAGAGCG 1 chr3R:17920443-17920563 ( 3) AGAGAGCG 1 chr2R:6631479-6631599 ( 107) CGAGAGAG 1 chr3L:26012678-26012798 ( 14) CGAGAGAG 1 chr3L:1102494-1102614 ( 29) CGAGAGAG 1 chr2R:8862562-8862682 ( 54) CGAGAGAG 1 chr3L:13227731-13227851 ( 71) CGAGAGAG 1 chr2L:12975082-12975202 ( 7) CGAGAGAG 1 chr2R:16499924-16500044 ( 33) CGAGAGAG 1 chr3L:9694547-9694667 ( 6) AAAGAGAG 1 chr3L:21644713-21644833 ( 93) GGAGAGAG 1 chrX:6997430-6997550 ( 2) GGAGAGAG 1 chrX:3451388-3451508 ( 17) AAAGAGAG 1 chr3R:16719962-16720082 ( 36) AAAGAGAG 1 chr2L:6252825-6252945 ( 77) AAAGAGAG 1 chr3L:872153-872273 ( 9) GGAGAGAG 1 chr3L:15090413-15090533 ( 56) AAAGAGAG 1 chr3R:17557594-17557714 ( 22) AAAGAGAG 1 chr3R:22899119-22899239 ( 6) GGAGAGAG 1 chr3R:16899092-16899212 ( 56) AAAGAGAG 1 chr3L:11428536-11428656 ( 69) AAAGAGAG 1 chrX:5770884-5771004 ( 103) AGAGAGAA 1 chr3R:19225758-19225878 ( 111) AGAGAGAA 1 chr2L:23512804-23512924 ( 65) AGAGAGAA 1 chrY:124303-124423 ( 51) AGAGAGAA 1 chrX:9639194-9639314 ( 69) CGAGAGCG 1 chr2R:8985613-8985733 ( 64) CGAGAGCG 1 chr2L:3545398-3545518 ( 69) CGAGAGCG 1 chr2L:15332690-15332810 ( 39) CGAGAGCG 1 chrX:14082849-14082969 ( 34) CGAGAGCG 1 chr2L:3534252-3534372 ( 59) AAAGAGCG 1 chr3L:11124054-11124174 ( 24) AAAGAGCG 1 chrX:14212217-14212337 ( 9) GGAGAGCG 1 chr2R:24736756-24736876 ( 23) GGAGAGCG 1 chr3L:15329677-15329797 ( 48) GGAGAGCG 1 chrX:15076698-15076818 ( 56) AGAGAGCA 1 chr3L:16029152-16029272 ( 28) AGAGAGCA 1 chr3L:3542673-3542793 ( 31) TGAGAGAG 1 chrX:6981799-6981919 ( 76) TGAGAGAG 1 chr3R:30090390-30090510 ( 106) CAAGAGAG 1 chr3L:1098870-1098990 ( 8) GAAGAGAG 1 chr2L:8542797-8542917 ( 44) GAAGAGAG 1 chrX:12546339-12546459 ( 88) TGAGAGCG 1 chr3L:11247946-11248066 ( 72) AAAGAGAA 1 chr2L:12854649-12854769 ( 97) AAAGAGAA 1 chrX:5636582-5636702 ( 64) GGAGAGCA 1 chr2R:18401877-18401997 ( 23) AAAGAGCA 1 chr3R:5414296-5414416 ( 94) GGAGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0953 E= 6.8e-135 156 -117 -136 -339 -99 -1356 189 -1356 192 -1356 -1356 -1356 -1356 -1356 209 -1356 192 -1356 -1356 -1356 -1356 -1356 209 -1356 140 34 -1356 -1356 -154 -1356 196 -1356 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 6.8e-135 0.776860 0.107438 0.090909 0.024793 0.132231 0.000000 0.867769 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.694215 0.305785 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-2 regular expression -------------------------------------------------------------------------------- AGAGAG[AC]G -------------------------------------------------------------------------------- Time 13.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CKCTCTCT MEME-3 width = 8 sites = 105 llr = 849 E-value = 6.4e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 71a:a:93 probability G 13:::::: matrix T 25:a:a17 bits 2.1 * * 1.9 *** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.0 * ***** (11.7 bits) 0.8 * ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus TG C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28861363-28861483 99 1.59e-05 GAATCCctct ctctctct ctctctctct chr2R:15349548-15349668 5 1.59e-05 GCGt ctctctct tgcactctct chr3R:20949253-20949373 100 1.59e-05 CTTTCTCTTG ctctctct ctctctctct chr2R:10430487-10430607 36 1.59e-05 CGCTGAACGT CTCTCTCT CAGCCTCCTT chr3R:5701220-5701340 21 1.59e-05 ctggctttct ctctctct ctctctctct chr3L:16047253-16047373 94 1.59e-05 GCATTTCCAC ctctctct cactctctct chr2L:18845037-18845157 67 1.59e-05 CTTGCGCGct ctctctct ctccctctct chrX:13747278-13747398 83 1.59e-05 cgttgaggtt ctctctct ccactgctct chr3L:18846268-18846388 65 1.59e-05 ctcactcgct ctctctct ctTTTAAGCC chrX:5636582-5636702 103 1.59e-05 GCCActctcc ctctctct ccctctctct chrX:1964939-1965059 56 1.59e-05 CTTCTGCCGt ctctctct ctctcgctct chr2L:13878112-13878232 35 1.59e-05 GCGTCACCTT CTCTCTCT TCGATGCTCT chr3L:2824859-2824979 42 1.59e-05 CCTCCCACAA CTCTCTCT GTCTTTCGGC chr3R:17566966-17567086 92 1.59e-05 cacggtcttt ctctctct ctctctctct chr2L:826510-826630 80 1.59e-05 ctctctctct ctctctct tgacctgcgc chrX:12007679-12007799 72 1.59e-05 ACTATCATTC ctctctct ccctctctct chr3R:5414296-5414416 12 1.59e-05 CATCTGAGAG ctctctct ctctctctcg chrX:15163027-15163147 69 1.59e-05 cgctcgctgg ctctctct ctctctctct chr2R:25114338-25114458 105 1.59e-05 ctctctctct ctctctct TGCTGGTC chr2R:18231251-18231371 26 1.59e-05 TGTGctcttc ctctctct tcgctctccc chr3R:18849332-18849452 80 1.59e-05 CGctctctct ctctctct ctctctcttt chr3L:18792908-18793028 89 1.59e-05 ctcccgctct ctctctct ctctctctct chr3R:11254563-11254683 37 1.59e-05 CAGtcgctct ctctctct ttgctgctgc chrX:15633505-15633625 15 1.59e-05 ctcgatctcc ctctctct ctctctctct chr2R:14959032-14959152 94 1.59e-05 TGctctctcg ctctctct ctctctctgt chr3L:21047895-21048015 33 1.59e-05 CTCATtctct ctctctct ctctctctct chr2R:14715857-14715977 78 1.59e-05 CTCActctct ctctctct ctctctccct chr3R:30563613-30563733 49 3.02e-05 CTGGAGTTTG CGCTCTCT TCTCGCTCTC chrX:8215953-8216073 76 3.02e-05 AAAACAGGTA CGCTCTCT GCCGCGCTCT chr3L:1102494-1102614 111 3.02e-05 TAGTTTTTCT CGCTCTCT TC chr3L:17989466-17989586 14 3.02e-05 TCGGATTCAC CGCTCTCT TCTCTCTCTC chr3L:9466049-9466169 48 3.02e-05 AAAATTGTTG CGCTCTCT CATTTCTGCG chrX:12546339-12546459 59 3.02e-05 ctcccttaca cgctctct cgctattgct chr3R:22042670-22042790 89 3.02e-05 CGACTTGCTG CGCTCTCT CGCTCTCTCA chr3R:6405342-6405462 96 3.02e-05 CCGCTTTGCA CGCTCTCT GCCTCGCGCT chr2R:14041194-14041314 27 3.02e-05 ctctctctct cgctctct cgctctcccc chrX:7196104-7196224 74 3.02e-05 TGAGCTGTGG CGCTCTCT TCTTCCGCCG chr2R:8272781-8272901 112 3.02e-05 TCGAGCGCAT CGCTCTCT T chr2R:19141956-19142076 91 3.02e-05 cccgcccgcc cgctctct ttcactctca chr3L:6997556-6997676 101 3.02e-05 cacacacacg cgctctct ctctctctct chr3L:22910336-22910456 17 4.49e-05 TGCTCTCATT CTCTCTCC CGTGCTTTGC chr3L:2585912-2586032 102 4.49e-05 cgctctctgt ctctctcc atctctcttt chr3R:17557594-17557714 32 4.49e-05 AAAGAGAGTG CTCTCTCC GGTCTCGCCG chr2R:5893629-5893749 104 4.49e-05 TCTTTTGGGG CTCTCTCC GCTCTGCCT chr3L:12804401-12804521 86 4.49e-05 GGAAGTGCTG ctctctcc cactctccct chrX:16559523-16559643 32 5.82e-05 ctcccgctct cgctctcc cgctctcgct chr2R:10219681-10219801 83 5.82e-05 cactctctcc cgctctcc cactcccgcc chr3R:9534701-9534821 109 5.82e-05 GCCTCTCTTT CGCTCTCC GGTG chr2L:12854649-12854769 34 5.82e-05 GCTGAATTTG CGCTCTCC GCTCTTCGCT chr2R:24736756-24736876 52 5.82e-05 CGTGCGCCGT CGCTCTCC GGCGATTTCC chrX:10823599-10823719 73 5.82e-05 cgctcctctt cgctctcc tttgcgccct chr3R:17666163-17666283 15 5.82e-05 CGCTCTCTCT CGCTCTCC TCCACTCTCC chr3R:16449754-16449874 32 9.14e-05 ctctttctcg cactctct cGTAGAACTT chr2R:13502045-13502165 1 9.14e-05 . ttctctct aactctcttt chr2R:17796099-17796219 84 9.14e-05 TTTCTCCGCT TTCTCTCT TACGAAACGC chr3L:1098870-1098990 29 9.14e-05 CACCGCGCGC Ttctctct ctctctctct chrX:8215091-8215211 5 9.14e-05 AAAT TTCTCTCT TTGAATTGTG chr2L:7495527-7495647 20 9.14e-05 CTGAGAGACA TTCTCTCT CATTTGCACC chr2R:13991754-13991874 44 9.14e-05 CAAAGCGGAT CACTCTCT TTCTCATTCT chrX:395925-396045 33 9.14e-05 CTCTTGCCGt cactctct ctctctcttt chr2L:7245424-7245544 46 9.14e-05 TCGGACTTTC CACTCTCT CGATTTTCCT chr3L:14219738-14219858 82 9.14e-05 CCctgtctct cactctct cgcgctctct chr3L:19896459-19896579 6 1.07e-04 gccac tgctCTCT TTGCACTCGT chr3R:4175239-4175359 37 1.07e-04 TTTTTAGACC TGCTCTCT GTCCCGCGTC chr3R:25208358-25208478 35 1.07e-04 AACTTGAACT TGCTCTCT TGTGGATCGC chrX:3332636-3332756 105 1.07e-04 TGCTACCGCC TGCTCTCT GCTCGCCT chr2L:13550761-13550881 83 1.22e-04 tgttgcatct ccctctct tgctctcctc chr3L:21047470-21047590 76 1.22e-04 TAAATCGCAA CCCTCTCT TGGCACGCGG chr3R:22899119-22899239 42 1.22e-04 CTGAGCAGTG CCCTCTCT CATCGTCGCT chr3L:3545019-3545139 105 1.52e-04 AGCCGGCTTG TTCTCTCC GAAAGAGA chr2L:3538992-3539112 53 1.52e-04 CTCGCTCGCT CACTCTCC AGTTTTCTCA chr3L:11124054-11124174 42 1.52e-04 AGAGGATGCG CACTCTCC CGCTCTCTTG chr2L:2753714-2753834 101 1.52e-04 CGGAACAGCG CACTCTCC CAATGGCTTA chrX:16087608-16087728 55 1.52e-04 TCACTTTTGA CACTCTCC CTGAGCGAAA chrX:16526224-16526344 35 1.52e-04 CGAGGACTCT CACTCTCC TCCTGCCTGC chr2L:701975-702095 96 1.52e-04 CCCGCTCTCT TTCTCTCC GAGATAGGTG chrX:2255120-2255240 71 1.52e-04 CATAAAGCTC TTCTCTCC TCTTCTCATG chr2R:20916558-20916678 109 1.82e-04 GCTCTCGCAA TGCTCTCC CGAG chrX:14212217-14212337 84 1.82e-04 ctctctgtct gtctctct ttccctctct chr2L:12975082-12975202 29 1.82e-04 AGCGGAGAGT TGCTCTCC CACTCCACCC chr3L:21598508-21598628 72 2.13e-04 TTGGGCGGCG GGCTCTCT TCGGAAGCCG chr2L:594799-594919 78 2.13e-04 TGCTTGGCAA TACTCTCT GGCTTTGGAC chr3R:30389198-30389318 52 2.13e-04 TGCGTGCCTC GGCTCTCT TGCCTTGGCC chr3L:10308050-10308170 58 2.13e-04 CCGCTCTTTT GGCTCTCT CACCTCACTC chrX:8518241-8518361 38 2.44e-04 tggcgcgtcg ccctctcc cgccttcctc chr3L:21023439-21023559 73 2.44e-04 TTGGCGTCGG CCCTCTCC CCCCACTTAT chrX:3451388-3451508 68 2.44e-04 ACGAAATTTA CTCTCTTT TTATTCTCGC chr2R:10798778-10798898 34 2.44e-04 GAGAGAGTTT CCCTCTCC CGCTGCTCTC chr2L:2451039-2451159 61 2.58e-04 GGCGACTCGA CTCTCTCG GCTACGACGG chr3L:9694547-9694667 53 2.74e-04 CTCTTTCGCT CGCTCTTT CTGTAAAGCC chrX:6013346-6013466 29 3.60e-04 ctctctctct ctctcgct ATAACTATAA chr3L:21644713-21644833 69 3.60e-04 CTGCAGGCAC GGCTCTCC CAGAGCCACA chr2R:21128032-21128152 40 3.60e-04 CCGTGCTCAT GGCTCTCC CGCTCGCCGA chr2R:13622867-13622987 81 3.60e-04 CGCGCTCTCG CTCTCGCT GGAAGGCGGC chr2R:12119091-12119211 22 3.60e-04 CTGGGCTGGC TActctcc gctctctctc chr3L:18139223-18139343 94 3.60e-04 TGCTTGATCC GGCTCTCC GGCTCTTTGC chr2L:7249505-7249625 59 4.04e-04 GCGGCACTTT CGCTCGCT CTCGCCGCGC chrX:7697436-7697556 112 4.69e-04 TCTTCCAAAC TTCTCTTT G chr3L:16029152-16029272 91 4.69e-04 ACTAAAGCAA TTCTCTTT ACCGCTCTTT chr2L:8542797-8542917 68 4.69e-04 ATTTTAAAAT TTCTCTTT AAGCGTGTTC chr3L:1885485-1885605 86 4.99e-04 tgttccctct ttctctcG GTGGCCCACT chrX:5965708-5965828 113 4.99e-04 GCTTACGCAC CACTCTCG chr3L:10680971-10681091 37 5.30e-04 CAACAAGTCG TGCTCTTT CGCCTGCTCT chr2R:14768759-14768879 20 6.12e-04 cactctatct ccctctcg cacgcgctct chr3R:18063331-18063451 1 7.34e-04 . TGCTCTTC ACCACGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28861363-28861483 1.6e-05 98_[+3]_14 chr2R:15349548-15349668 1.6e-05 4_[+3]_108 chr3R:20949253-20949373 1.6e-05 99_[+3]_13 chr2R:10430487-10430607 1.6e-05 35_[+3]_77 chr3R:5701220-5701340 1.6e-05 20_[+3]_92 chr3L:16047253-16047373 1.6e-05 93_[+3]_19 chr2L:18845037-18845157 1.6e-05 66_[+3]_46 chrX:13747278-13747398 1.6e-05 82_[+3]_30 chr3L:18846268-18846388 1.6e-05 64_[+3]_48 chrX:5636582-5636702 1.6e-05 102_[+3]_10 chrX:1964939-1965059 1.6e-05 55_[+3]_57 chr2L:13878112-13878232 1.6e-05 34_[+3]_78 chr3L:2824859-2824979 1.6e-05 41_[+3]_71 chr3R:17566966-17567086 1.6e-05 91_[+3]_21 chr2L:826510-826630 1.6e-05 79_[+3]_33 chrX:12007679-12007799 1.6e-05 71_[+3]_41 chr3R:5414296-5414416 1.6e-05 11_[+3]_101 chrX:15163027-15163147 1.6e-05 68_[+3]_44 chr2R:25114338-25114458 1.6e-05 104_[+3]_8 chr2R:18231251-18231371 1.6e-05 25_[+3]_87 chr3R:18849332-18849452 1.6e-05 79_[+3]_33 chr3L:18792908-18793028 1.6e-05 88_[+3]_24 chr3R:11254563-11254683 1.6e-05 36_[+3]_76 chrX:15633505-15633625 1.6e-05 14_[+3]_98 chr2R:14959032-14959152 1.6e-05 93_[+3]_19 chr3L:21047895-21048015 1.6e-05 32_[+3]_80 chr2R:14715857-14715977 1.6e-05 77_[+3]_35 chr3R:30563613-30563733 3e-05 48_[+3]_64 chrX:8215953-8216073 3e-05 75_[+3]_37 chr3L:1102494-1102614 3e-05 110_[+3]_2 chr3L:17989466-17989586 3e-05 13_[+3]_99 chr3L:9466049-9466169 3e-05 47_[+3]_65 chrX:12546339-12546459 3e-05 58_[+3]_54 chr3R:22042670-22042790 3e-05 88_[+3]_24 chr3R:6405342-6405462 3e-05 95_[+3]_17 chr2R:14041194-14041314 3e-05 26_[+3]_86 chrX:7196104-7196224 3e-05 73_[+3]_39 chr2R:8272781-8272901 3e-05 111_[+3]_1 chr2R:19141956-19142076 3e-05 90_[+3]_22 chr3L:6997556-6997676 3e-05 100_[+3]_12 chr3L:22910336-22910456 4.5e-05 16_[+3]_96 chr3L:2585912-2586032 4.5e-05 101_[+3]_11 chr3R:17557594-17557714 4.5e-05 31_[+3]_81 chr2R:5893629-5893749 4.5e-05 103_[+3]_9 chr3L:12804401-12804521 4.5e-05 85_[+3]_27 chrX:16559523-16559643 5.8e-05 31_[+3]_81 chr2R:10219681-10219801 5.8e-05 82_[+3]_30 chr3R:9534701-9534821 5.8e-05 108_[+3]_4 chr2L:12854649-12854769 5.8e-05 33_[+3]_79 chr2R:24736756-24736876 5.8e-05 51_[+3]_61 chrX:10823599-10823719 5.8e-05 72_[+3]_40 chr3R:17666163-17666283 5.8e-05 14_[+3]_98 chr3R:16449754-16449874 9.1e-05 31_[+3]_81 chr2R:13502045-13502165 9.1e-05 [+3]_112 chr2R:17796099-17796219 9.1e-05 83_[+3]_29 chr3L:1098870-1098990 9.1e-05 28_[+3]_84 chrX:8215091-8215211 9.1e-05 4_[+3]_108 chr2L:7495527-7495647 9.1e-05 19_[+3]_93 chr2R:13991754-13991874 9.1e-05 43_[+3]_69 chrX:395925-396045 9.1e-05 32_[+3]_80 chr2L:7245424-7245544 9.1e-05 45_[+3]_67 chr3L:14219738-14219858 9.1e-05 81_[+3]_31 chr3L:19896459-19896579 0.00011 5_[+3]_107 chr3R:4175239-4175359 0.00011 36_[+3]_76 chr3R:25208358-25208478 0.00011 34_[+3]_78 chrX:3332636-3332756 0.00011 104_[+3]_8 chr2L:13550761-13550881 0.00012 82_[+3]_30 chr3L:21047470-21047590 0.00012 75_[+3]_37 chr3R:22899119-22899239 0.00012 41_[+3]_71 chr3L:3545019-3545139 0.00015 104_[+3]_8 chr2L:3538992-3539112 0.00015 52_[+3]_60 chr3L:11124054-11124174 0.00015 41_[+3]_71 chr2L:2753714-2753834 0.00015 100_[+3]_12 chrX:16087608-16087728 0.00015 54_[+3]_58 chrX:16526224-16526344 0.00015 34_[+3]_78 chr2L:701975-702095 0.00015 95_[+3]_17 chrX:2255120-2255240 0.00015 70_[+3]_42 chr2R:20916558-20916678 0.00018 108_[+3]_4 chrX:14212217-14212337 0.00018 83_[+3]_29 chr2L:12975082-12975202 0.00018 28_[+3]_84 chr3L:21598508-21598628 0.00021 71_[+3]_41 chr2L:594799-594919 0.00021 77_[+3]_35 chr3R:30389198-30389318 0.00021 51_[+3]_61 chr3L:10308050-10308170 0.00021 57_[+3]_55 chrX:8518241-8518361 0.00024 37_[+3]_75 chr3L:21023439-21023559 0.00024 72_[+3]_40 chrX:3451388-3451508 0.00024 67_[+3]_45 chr2R:10798778-10798898 0.00024 33_[+3]_79 chr2L:2451039-2451159 0.00026 60_[+3]_52 chr3L:9694547-9694667 0.00027 52_[+3]_60 chrX:6013346-6013466 0.00036 28_[+3]_84 chr3L:21644713-21644833 0.00036 68_[+3]_44 chr2R:21128032-21128152 0.00036 39_[+3]_73 chr2R:13622867-13622987 0.00036 80_[+3]_32 chr2R:12119091-12119211 0.00036 21_[+3]_91 chr3L:18139223-18139343 0.00036 93_[+3]_19 chr2L:7249505-7249625 0.0004 58_[+3]_54 chrX:7697436-7697556 0.00047 111_[+3]_1 chr3L:16029152-16029272 0.00047 90_[+3]_22 chr2L:8542797-8542917 0.00047 67_[+3]_45 chr3L:1885485-1885605 0.0005 85_[+3]_27 chrX:5965708-5965828 0.0005 112_[+3] chr3L:10680971-10681091 0.00053 36_[+3]_76 chr2R:14768759-14768879 0.00061 19_[+3]_93 chr3R:18063331-18063451 0.00073 [+3]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKCTCTCT width=8 seqs=105 chr3R:28861363-28861483 ( 99) CTCTCTCT 1 chr2R:15349548-15349668 ( 5) CTCTCTCT 1 chr3R:20949253-20949373 ( 100) CTCTCTCT 1 chr2R:10430487-10430607 ( 36) CTCTCTCT 1 chr3R:5701220-5701340 ( 21) CTCTCTCT 1 chr3L:16047253-16047373 ( 94) CTCTCTCT 1 chr2L:18845037-18845157 ( 67) CTCTCTCT 1 chrX:13747278-13747398 ( 83) CTCTCTCT 1 chr3L:18846268-18846388 ( 65) CTCTCTCT 1 chrX:5636582-5636702 ( 103) CTCTCTCT 1 chrX:1964939-1965059 ( 56) CTCTCTCT 1 chr2L:13878112-13878232 ( 35) CTCTCTCT 1 chr3L:2824859-2824979 ( 42) CTCTCTCT 1 chr3R:17566966-17567086 ( 92) CTCTCTCT 1 chr2L:826510-826630 ( 80) CTCTCTCT 1 chrX:12007679-12007799 ( 72) CTCTCTCT 1 chr3R:5414296-5414416 ( 12) CTCTCTCT 1 chrX:15163027-15163147 ( 69) CTCTCTCT 1 chr2R:25114338-25114458 ( 105) CTCTCTCT 1 chr2R:18231251-18231371 ( 26) CTCTCTCT 1 chr3R:18849332-18849452 ( 80) CTCTCTCT 1 chr3L:18792908-18793028 ( 89) CTCTCTCT 1 chr3R:11254563-11254683 ( 37) CTCTCTCT 1 chrX:15633505-15633625 ( 15) CTCTCTCT 1 chr2R:14959032-14959152 ( 94) CTCTCTCT 1 chr3L:21047895-21048015 ( 33) CTCTCTCT 1 chr2R:14715857-14715977 ( 78) CTCTCTCT 1 chr3R:30563613-30563733 ( 49) CGCTCTCT 1 chrX:8215953-8216073 ( 76) CGCTCTCT 1 chr3L:1102494-1102614 ( 111) CGCTCTCT 1 chr3L:17989466-17989586 ( 14) CGCTCTCT 1 chr3L:9466049-9466169 ( 48) CGCTCTCT 1 chrX:12546339-12546459 ( 59) CGCTCTCT 1 chr3R:22042670-22042790 ( 89) CGCTCTCT 1 chr3R:6405342-6405462 ( 96) CGCTCTCT 1 chr2R:14041194-14041314 ( 27) CGCTCTCT 1 chrX:7196104-7196224 ( 74) CGCTCTCT 1 chr2R:8272781-8272901 ( 112) CGCTCTCT 1 chr2R:19141956-19142076 ( 91) CGCTCTCT 1 chr3L:6997556-6997676 ( 101) CGCTCTCT 1 chr3L:22910336-22910456 ( 17) CTCTCTCC 1 chr3L:2585912-2586032 ( 102) CTCTCTCC 1 chr3R:17557594-17557714 ( 32) CTCTCTCC 1 chr2R:5893629-5893749 ( 104) CTCTCTCC 1 chr3L:12804401-12804521 ( 86) CTCTCTCC 1 chrX:16559523-16559643 ( 32) CGCTCTCC 1 chr2R:10219681-10219801 ( 83) CGCTCTCC 1 chr3R:9534701-9534821 ( 109) CGCTCTCC 1 chr2L:12854649-12854769 ( 34) CGCTCTCC 1 chr2R:24736756-24736876 ( 52) CGCTCTCC 1 chrX:10823599-10823719 ( 73) CGCTCTCC 1 chr3R:17666163-17666283 ( 15) CGCTCTCC 1 chr3R:16449754-16449874 ( 32) CACTCTCT 1 chr2R:13502045-13502165 ( 1) TTCTCTCT 1 chr2R:17796099-17796219 ( 84) TTCTCTCT 1 chr3L:1098870-1098990 ( 29) TTCTCTCT 1 chrX:8215091-8215211 ( 5) TTCTCTCT 1 chr2L:7495527-7495647 ( 20) TTCTCTCT 1 chr2R:13991754-13991874 ( 44) CACTCTCT 1 chrX:395925-396045 ( 33) CACTCTCT 1 chr2L:7245424-7245544 ( 46) CACTCTCT 1 chr3L:14219738-14219858 ( 82) CACTCTCT 1 chr3L:19896459-19896579 ( 6) TGCTCTCT 1 chr3R:4175239-4175359 ( 37) TGCTCTCT 1 chr3R:25208358-25208478 ( 35) TGCTCTCT 1 chrX:3332636-3332756 ( 105) TGCTCTCT 1 chr2L:13550761-13550881 ( 83) CCCTCTCT 1 chr3L:21047470-21047590 ( 76) CCCTCTCT 1 chr3R:22899119-22899239 ( 42) CCCTCTCT 1 chr3L:3545019-3545139 ( 105) TTCTCTCC 1 chr2L:3538992-3539112 ( 53) CACTCTCC 1 chr3L:11124054-11124174 ( 42) CACTCTCC 1 chr2L:2753714-2753834 ( 101) CACTCTCC 1 chrX:16087608-16087728 ( 55) CACTCTCC 1 chrX:16526224-16526344 ( 35) CACTCTCC 1 chr2L:701975-702095 ( 96) TTCTCTCC 1 chrX:2255120-2255240 ( 71) TTCTCTCC 1 chr2R:20916558-20916678 ( 109) TGCTCTCC 1 chrX:14212217-14212337 ( 84) GTCTCTCT 1 chr2L:12975082-12975202 ( 29) TGCTCTCC 1 chr3L:21598508-21598628 ( 72) GGCTCTCT 1 chr2L:594799-594919 ( 78) TACTCTCT 1 chr3R:30389198-30389318 ( 52) GGCTCTCT 1 chr3L:10308050-10308170 ( 58) GGCTCTCT 1 chrX:8518241-8518361 ( 38) CCCTCTCC 1 chr3L:21023439-21023559 ( 73) CCCTCTCC 1 chrX:3451388-3451508 ( 68) CTCTCTTT 1 chr2R:10798778-10798898 ( 34) CCCTCTCC 1 chr2L:2451039-2451159 ( 61) CTCTCTCG 1 chr3L:9694547-9694667 ( 53) CGCTCTTT 1 chrX:6013346-6013466 ( 29) CTCTCGCT 1 chr3L:21644713-21644833 ( 69) GGCTCTCC 1 chr2R:21128032-21128152 ( 40) GGCTCTCC 1 chr2R:13622867-13622987 ( 81) CTCTCGCT 1 chr2R:12119091-12119211 ( 22) TACTCTCC 1 chr3L:18139223-18139343 ( 94) GGCTCTCC 1 chr2L:7249505-7249625 ( 59) CGCTCGCT 1 chrX:7697436-7697556 ( 112) TTCTCTTT 1 chr3L:16029152-16029272 ( 91) TTCTCTTT 1 chr2L:8542797-8542917 ( 68) TTCTCTTT 1 chr3L:1885485-1885605 ( 86) TTCTCTCG 1 chrX:5965708-5965828 ( 113) CACTCTCG 1 chr3L:10680971-10681091 ( 37) TGCTCTTT 1 chr2R:14768759-14768879 ( 20) CCCTCTCG 1 chr3R:18063331-18063451 ( 1) TGCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.24132 E= 6.4e-060 -1336 158 -181 -31 -109 -186 55 84 -1336 205 -1336 -1336 -1336 -1336 -1336 194 -1336 205 -1336 -1336 -1336 -1336 -303 190 -1336 195 -1336 -197 -1336 24 -262 138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 6.4e-060 0.000000 0.723810 0.066667 0.209524 0.123810 0.066667 0.342857 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.971429 0.000000 0.933333 0.000000 0.066667 0.000000 0.285714 0.038095 0.676190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCTCTCT MEME-3 regular expression -------------------------------------------------------------------------------- [CT][TG]CTCTC[TC] -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAG MEME-4 width = 8 sites = 83 llr = 711 E-value = 3.6e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 929:a:73 pos.-specific C 1:::::3: probability G :8:a:a:7 matrix T ::1::::: bits 2.1 * * 1.9 *** 1.7 *** 1.5 * *** Relative 1.3 ****** * Entropy 1.0 ******** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus A CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1975978-1976098 69 1.46e-05 gagcggcggg agagagag agagagagag chr3R:29691222-29691342 71 1.46e-05 GAAGAACGTC agagagag agagagagag chr3L:15507599-15507719 93 1.46e-05 agagagagag agagagag aaaggaaaag chr3L:11046692-11046812 69 1.46e-05 gctcgggaaa agagagag agagagagag chr2L:19398084-19398204 24 1.46e-05 agagagagga agagagag tgaTGAAAAG chr2L:2242213-2242333 18 1.46e-05 agagagagag agagagag TGAGCGAGCT chr3R:9866093-9866213 103 1.46e-05 agcgacaggg agagagag agagagaggg chr2R:17794196-17794316 77 1.46e-05 agagagagag agagagag agTGTGTGGG chrX:6353093-6353213 29 1.46e-05 AGCGTAAGGC AGAGAGAG TTGGTCGAGC chr2R:13622867-13622987 21 1.46e-05 agaatgtgag agagagag cgcgcggaga chr3R:17776445-17776565 20 1.46e-05 gaagagagag agagagag agCACGGAAC chrX:11372836-11372956 73 1.46e-05 TCGAagagag agagagag agtgagagag chrX:6988990-6989110 69 1.46e-05 AGTCTgagag agagagag agagagagag chr3L:1921046-1921166 67 1.46e-05 agagcgaaac agagagag gaagagagag chr3L:18787950-18788070 52 1.46e-05 AGAGGTagag agagagag agagagagag chr2R:21843177-21843297 49 1.46e-05 agagagagag agagagag agagagCGAG chr3L:13993477-13993597 100 1.46e-05 gagagagccg agagagag TCGTTGTGAT chr2L:12545838-12545958 28 1.46e-05 aaaatgagtg agagagag atggagagag chr2R:16583522-16583642 44 1.46e-05 agagagagag agagagag aTCTCGCACA chrX:16089414-16089534 34 1.46e-05 TTCAACGGCg agagagag atagagagag chr2L:701975-702095 34 1.46e-05 GCGTAAACGC agagagag agagagagag chr2R:6828191-6828311 71 1.46e-05 gaggagatag agagagag acagagagag chr2R:14713665-14713785 82 1.46e-05 ATCCTTTGGC AGAGAGAG TAAAGAAATT chr2L:12655868-12655988 95 2.79e-05 TTTGTGCGGG AGAGAGCG CGCTTGTTGG chr2L:8031732-8031852 97 2.79e-05 tgagcgtgtg agagagCG GGGAATGTGG chr3R:4174508-4174628 54 2.79e-05 GAGTGAGCGC AGAGAGCG TCTTTCGACG chrX:2789867-2789987 38 2.79e-05 ACGCACACAA AGAGAGCG CGAGAGCGCG chr3L:9695460-9695580 56 2.79e-05 ATATTTTACG AGAGAGCG CAAGAGAGCG chr3R:25184678-25184798 43 2.79e-05 TGAGAGCGAA AGAGAGCG GGCGAAAGAG chr3L:4363641-4363761 27 2.79e-05 cgatagagat agagagcg aTGCAACTGC chr2R:24712887-24713007 46 2.79e-05 TGACACCGCA AGAGAGCG CAAAGGTCCT chr2R:19411413-19411533 56 2.79e-05 AATGACTCTC AGAGAGCG GAAAACTGAC chr3R:25472705-25472825 30 4.43e-05 CGAGAATGGG AGAGAGAA AGAGACAGAG chrX:5047185-5047305 70 4.43e-05 aaagagagag agagagaa tgagaCGCAC chr3R:16719962-16720082 57 4.43e-05 CCAGATAAAT AGAGAGAA CGCGCACAGA chr3L:13227731-13227851 21 4.43e-05 TGGTTTTCCG AGAGAGAA AATTGGTGGA chr3R:4739013-4739133 48 4.43e-05 gaaagagcga agagagaa agagCGGTTC chr2L:23512804-23512924 79 4.43e-05 agaagagaga agagagaa gagagaagag chrX:1234262-1234382 23 4.43e-05 CGCTGCTGTA AGAGAGAA CAAGGACCGT chr3R:31621926-31622046 54 4.43e-05 agacagtcgc agagagaa agtccgagag chrY:124303-124423 23 4.43e-05 agaagatgga agagagaa gatggaagag chrX:1943390-1943510 16 6.08e-05 AGAGAGAGGC AAAGAGAG CTGAGAGAAA chr3L:21025684-21025804 64 6.08e-05 ATTCATGCAA AAAGAGAG CAAGCAGAGA chrX:5047942-5048062 14 6.08e-05 CTgaggaggg aaagagag ggcgcgtcag chr3L:5277188-5277308 21 6.08e-05 tgcacaagag aaagagag tagagagaga chrX:4508181-4508301 66 6.08e-05 Agagagcacg aaagagag ccagagagca chr3R:15476430-15476550 89 6.08e-05 GCTGTGGCGA AAAGAGAG CCGAGCGCGG chr3R:15664880-15665000 85 6.08e-05 TTCAACTTCG AAAGAGAG TACTTCTTGG chr3R:17920443-17920563 89 6.08e-05 CATTACTGCG AAAGAGAG CCAGAGTCGG chr2L:8544065-8544185 112 7.58e-05 taagagtggg agagagCA G chr2L:17752632-17752752 2 7.58e-05 C AGAGAGCA CAAATTCTCC chrX:8057921-8058041 63 7.58e-05 gagagtatca agagagca aaagcgaaag chrX:19718491-19718611 112 7.58e-05 CGGGAGAGCG AGAGAGCA G chr3R:19225758-19225878 88 7.58e-05 GAGAGAACTG AGAGAGCA GCAACACACG chr3L:872153-872273 1 7.58e-05 . AGAGAGCA GGAGAGAGAT chr3R:13815121-13815241 72 7.58e-05 TTTCCACTTA AGAGAGCA CAGAGCTTTT chrX:14082849-14082969 13 7.58e-05 GCACTGATTG AGAGAGCA ATCTGGCACG chrX:10209726-10209846 42 9.09e-05 CGGGCAGAAC AAAGAGCG CACGAAGGAG chr3R:11760149-11760269 10 9.09e-05 agagcgaaa aaagagcg gtgggcggcg chr2L:3545398-3545518 9 9.09e-05 GCCGAGCC AAAGAGCG CGCTAGAGAG chr3R:16899092-16899212 16 9.09e-05 AATGTCGCTC AAAGAGCG ACACGTGAAC chr3L:19896459-19896579 32 1.19e-04 GTTTATTACA AGTGAGAG AACGGAAGTA chrX:8058885-8059005 89 1.19e-04 ggagagagag agtgagag agCCGCCGCA chr2R:9440857-9440977 28 1.19e-04 TTAATTCACT CGAGAGAG CCGGAGATAG chrX:16526224-16526344 55 1.19e-04 CTGCCTGCGC CGAGAGAG CCAGTGCCCT chrX:17710914-17711034 66 1.19e-04 AGAGAAAAGC CGAGAGAG TGAGAACACA chr2L:8542797-8542917 23 1.19e-04 AAAAGGAAAT AGTGAGAG GAGAGGGCTT chr3L:7808928-7809048 22 1.37e-04 TAACACACAC AAAGAGAA CCCGAAAGAG chr3L:15090413-15090533 99 1.37e-04 CGAGAGAAAC AAAGAGAA ATCCGAGAGA chr3L:15329677-15329797 57 1.37e-04 GGGAGAGCGA AAAGAGAA AGTGGTGAAT chr2L:15332690-15332810 101 1.37e-04 CAATTGGCTT AAAGAGAA TGCTTATGCT chrX:5770884-5771004 5 1.50e-04 ggag agggagag gAGCTCCCCA chr3R:10638864-10638984 38 1.50e-04 AGAGAGAGTA AGGGAGAG GATGTGCCGA chr2R:7146985-7147105 73 1.50e-04 GAGATCTGAC AGGGAGAG GACATGAGAT chr4:960186-960306 103 1.76e-04 aatttttgtt cgagagcg agagagcgga chr3R:22042670-22042790 42 1.76e-04 TCCGTGTGTG AGTGAGCG ATCGCCGAGG chrX:17651379-17651499 9 1.76e-04 AGAGTCAG AGTGAGCG AGCACGAGCG chrX:5965708-5965828 54 2.36e-04 AGAGTAAGAG CGAGAGAA AACTCTTTCT chrX:9639194-9639314 53 2.82e-04 ACAAGGGACG AGGGAGAA AGTAAACGCG chr2R:8985613-8985733 55 2.82e-04 AGCGCGTTTT CAAGAGAG CCGAGAGCGG chr3L:6943459-6943579 84 3.10e-04 TATAATATCC AGTGAGCA AAAGCGAGTG chr3L:21023439-21023559 25 3.83e-04 CGTCTCGCTC AGAGAAAG TTTGGCGTTT chr3L:10308050-10308170 95 3.83e-04 GACGTCATTA AATGAGCG AGGGACAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1975978-1976098 1.5e-05 68_[+4]_44 chr3R:29691222-29691342 1.5e-05 70_[+4]_42 chr3L:15507599-15507719 1.5e-05 92_[+4]_20 chr3L:11046692-11046812 1.5e-05 68_[+4]_44 chr2L:19398084-19398204 1.5e-05 23_[+4]_89 chr2L:2242213-2242333 1.5e-05 17_[+4]_95 chr3R:9866093-9866213 1.5e-05 102_[+4]_10 chr2R:17794196-17794316 1.5e-05 76_[+4]_36 chrX:6353093-6353213 1.5e-05 28_[+4]_84 chr2R:13622867-13622987 1.5e-05 20_[+4]_92 chr3R:17776445-17776565 1.5e-05 19_[+4]_93 chrX:11372836-11372956 1.5e-05 72_[+4]_40 chrX:6988990-6989110 1.5e-05 68_[+4]_44 chr3L:1921046-1921166 1.5e-05 66_[+4]_46 chr3L:18787950-18788070 1.5e-05 51_[+4]_61 chr2R:21843177-21843297 1.5e-05 48_[+4]_64 chr3L:13993477-13993597 1.5e-05 99_[+4]_13 chr2L:12545838-12545958 1.5e-05 27_[+4]_85 chr2R:16583522-16583642 1.5e-05 43_[+4]_69 chrX:16089414-16089534 1.5e-05 33_[+4]_79 chr2L:701975-702095 1.5e-05 33_[+4]_79 chr2R:6828191-6828311 1.5e-05 70_[+4]_42 chr2R:14713665-14713785 1.5e-05 81_[+4]_31 chr2L:12655868-12655988 2.8e-05 94_[+4]_18 chr2L:8031732-8031852 2.8e-05 96_[+4]_16 chr3R:4174508-4174628 2.8e-05 53_[+4]_59 chrX:2789867-2789987 2.8e-05 37_[+4]_75 chr3L:9695460-9695580 2.8e-05 55_[+4]_57 chr3R:25184678-25184798 2.8e-05 42_[+4]_70 chr3L:4363641-4363761 2.8e-05 26_[+4]_86 chr2R:24712887-24713007 2.8e-05 45_[+4]_67 chr2R:19411413-19411533 2.8e-05 55_[+4]_57 chr3R:25472705-25472825 4.4e-05 29_[+4]_83 chrX:5047185-5047305 4.4e-05 69_[+4]_43 chr3R:16719962-16720082 4.4e-05 56_[+4]_56 chr3L:13227731-13227851 4.4e-05 20_[+4]_92 chr3R:4739013-4739133 4.4e-05 47_[+4]_65 chr2L:23512804-23512924 4.4e-05 78_[+4]_34 chrX:1234262-1234382 4.4e-05 22_[+4]_90 chr3R:31621926-31622046 4.4e-05 53_[+4]_59 chrY:124303-124423 4.4e-05 22_[+4]_90 chrX:1943390-1943510 6.1e-05 15_[+4]_97 chr3L:21025684-21025804 6.1e-05 63_[+4]_49 chrX:5047942-5048062 6.1e-05 13_[+4]_99 chr3L:5277188-5277308 6.1e-05 20_[+4]_92 chrX:4508181-4508301 6.1e-05 65_[+4]_47 chr3R:15476430-15476550 6.1e-05 88_[+4]_24 chr3R:15664880-15665000 6.1e-05 84_[+4]_28 chr3R:17920443-17920563 6.1e-05 88_[+4]_24 chr2L:8544065-8544185 7.6e-05 111_[+4]_1 chr2L:17752632-17752752 7.6e-05 1_[+4]_111 chrX:8057921-8058041 7.6e-05 62_[+4]_50 chrX:19718491-19718611 7.6e-05 111_[+4]_1 chr3R:19225758-19225878 7.6e-05 87_[+4]_25 chr3L:872153-872273 7.6e-05 [+4]_112 chr3R:13815121-13815241 7.6e-05 71_[+4]_41 chrX:14082849-14082969 7.6e-05 12_[+4]_100 chrX:10209726-10209846 9.1e-05 41_[+4]_71 chr3R:11760149-11760269 9.1e-05 9_[+4]_103 chr2L:3545398-3545518 9.1e-05 8_[+4]_104 chr3R:16899092-16899212 9.1e-05 15_[+4]_97 chr3L:19896459-19896579 0.00012 31_[+4]_81 chrX:8058885-8059005 0.00012 88_[+4]_24 chr2R:9440857-9440977 0.00012 27_[+4]_85 chrX:16526224-16526344 0.00012 54_[+4]_58 chrX:17710914-17711034 0.00012 65_[+4]_47 chr2L:8542797-8542917 0.00012 22_[+4]_90 chr3L:7808928-7809048 0.00014 21_[+4]_91 chr3L:15090413-15090533 0.00014 98_[+4]_14 chr3L:15329677-15329797 0.00014 56_[+4]_56 chr2L:15332690-15332810 0.00014 100_[+4]_12 chrX:5770884-5771004 0.00015 4_[+4]_108 chr3R:10638864-10638984 0.00015 37_[+4]_75 chr2R:7146985-7147105 0.00015 72_[+4]_40 chr4:960186-960306 0.00018 102_[+4]_10 chr3R:22042670-22042790 0.00018 41_[+4]_71 chrX:17651379-17651499 0.00018 8_[+4]_104 chrX:5965708-5965828 0.00024 53_[+4]_59 chrX:9639194-9639314 0.00028 52_[+4]_60 chr2R:8985613-8985733 0.00028 54_[+4]_58 chr3L:6943459-6943579 0.00031 83_[+4]_29 chr3L:21023439-21023559 0.00038 24_[+4]_88 chr3L:10308050-10308170 0.00038 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAG width=8 seqs=83 chrX:1975978-1976098 ( 69) AGAGAGAG 1 chr3R:29691222-29691342 ( 71) AGAGAGAG 1 chr3L:15507599-15507719 ( 93) AGAGAGAG 1 chr3L:11046692-11046812 ( 69) AGAGAGAG 1 chr2L:19398084-19398204 ( 24) AGAGAGAG 1 chr2L:2242213-2242333 ( 18) AGAGAGAG 1 chr3R:9866093-9866213 ( 103) AGAGAGAG 1 chr2R:17794196-17794316 ( 77) AGAGAGAG 1 chrX:6353093-6353213 ( 29) AGAGAGAG 1 chr2R:13622867-13622987 ( 21) AGAGAGAG 1 chr3R:17776445-17776565 ( 20) AGAGAGAG 1 chrX:11372836-11372956 ( 73) AGAGAGAG 1 chrX:6988990-6989110 ( 69) AGAGAGAG 1 chr3L:1921046-1921166 ( 67) AGAGAGAG 1 chr3L:18787950-18788070 ( 52) AGAGAGAG 1 chr2R:21843177-21843297 ( 49) AGAGAGAG 1 chr3L:13993477-13993597 ( 100) AGAGAGAG 1 chr2L:12545838-12545958 ( 28) AGAGAGAG 1 chr2R:16583522-16583642 ( 44) AGAGAGAG 1 chrX:16089414-16089534 ( 34) AGAGAGAG 1 chr2L:701975-702095 ( 34) AGAGAGAG 1 chr2R:6828191-6828311 ( 71) AGAGAGAG 1 chr2R:14713665-14713785 ( 82) AGAGAGAG 1 chr2L:12655868-12655988 ( 95) AGAGAGCG 1 chr2L:8031732-8031852 ( 97) AGAGAGCG 1 chr3R:4174508-4174628 ( 54) AGAGAGCG 1 chrX:2789867-2789987 ( 38) AGAGAGCG 1 chr3L:9695460-9695580 ( 56) AGAGAGCG 1 chr3R:25184678-25184798 ( 43) AGAGAGCG 1 chr3L:4363641-4363761 ( 27) AGAGAGCG 1 chr2R:24712887-24713007 ( 46) AGAGAGCG 1 chr2R:19411413-19411533 ( 56) AGAGAGCG 1 chr3R:25472705-25472825 ( 30) AGAGAGAA 1 chrX:5047185-5047305 ( 70) AGAGAGAA 1 chr3R:16719962-16720082 ( 57) AGAGAGAA 1 chr3L:13227731-13227851 ( 21) AGAGAGAA 1 chr3R:4739013-4739133 ( 48) AGAGAGAA 1 chr2L:23512804-23512924 ( 79) AGAGAGAA 1 chrX:1234262-1234382 ( 23) AGAGAGAA 1 chr3R:31621926-31622046 ( 54) AGAGAGAA 1 chrY:124303-124423 ( 23) AGAGAGAA 1 chrX:1943390-1943510 ( 16) AAAGAGAG 1 chr3L:21025684-21025804 ( 64) AAAGAGAG 1 chrX:5047942-5048062 ( 14) AAAGAGAG 1 chr3L:5277188-5277308 ( 21) AAAGAGAG 1 chrX:4508181-4508301 ( 66) AAAGAGAG 1 chr3R:15476430-15476550 ( 89) AAAGAGAG 1 chr3R:15664880-15665000 ( 85) AAAGAGAG 1 chr3R:17920443-17920563 ( 89) AAAGAGAG 1 chr2L:8544065-8544185 ( 112) AGAGAGCA 1 chr2L:17752632-17752752 ( 2) AGAGAGCA 1 chrX:8057921-8058041 ( 63) AGAGAGCA 1 chrX:19718491-19718611 ( 112) AGAGAGCA 1 chr3R:19225758-19225878 ( 88) AGAGAGCA 1 chr3L:872153-872273 ( 1) AGAGAGCA 1 chr3R:13815121-13815241 ( 72) AGAGAGCA 1 chrX:14082849-14082969 ( 13) AGAGAGCA 1 chrX:10209726-10209846 ( 42) AAAGAGCG 1 chr3R:11760149-11760269 ( 10) AAAGAGCG 1 chr2L:3545398-3545518 ( 9) AAAGAGCG 1 chr3R:16899092-16899212 ( 16) AAAGAGCG 1 chr3L:19896459-19896579 ( 32) AGTGAGAG 1 chrX:8058885-8059005 ( 89) AGTGAGAG 1 chr2R:9440857-9440977 ( 28) CGAGAGAG 1 chrX:16526224-16526344 ( 55) CGAGAGAG 1 chrX:17710914-17711034 ( 66) CGAGAGAG 1 chr2L:8542797-8542917 ( 23) AGTGAGAG 1 chr3L:7808928-7809048 ( 22) AAAGAGAA 1 chr3L:15090413-15090533 ( 99) AAAGAGAA 1 chr3L:15329677-15329797 ( 57) AAAGAGAA 1 chr2L:15332690-15332810 ( 101) AAAGAGAA 1 chrX:5770884-5771004 ( 5) AGGGAGAG 1 chr3R:10638864-10638984 ( 38) AGGGAGAG 1 chr2R:7146985-7147105 ( 73) AGGGAGAG 1 chr4:960186-960306 ( 103) CGAGAGCG 1 chr3R:22042670-22042790 ( 42) AGTGAGCG 1 chrX:17651379-17651499 ( 9) AGTGAGCG 1 chrX:5965708-5965828 ( 54) CGAGAGAA 1 chrX:9639194-9639314 ( 53) AGGGAGAA 1 chr2R:8985613-8985733 ( 55) CAAGAGAG 1 chr3L:6943459-6943579 ( 84) AGTGAGCA 1 chr3L:21023439-21023559 ( 25) AGAGAAAG 1 chr3L:10308050-10308170 ( 95) AATGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5992 E= 3.6e-051 182 -174 -1302 -1302 -28 -1302 174 -1302 172 -1302 -228 -163 -1302 -1302 209 -1302 192 -1302 -1302 -1302 -445 -1302 208 -1302 138 37 -1302 -1302 13 -1302 160 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 3.6e-051 0.927711 0.072289 0.000000 0.000000 0.216867 0.000000 0.783133 0.000000 0.867470 0.000000 0.048193 0.084337 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.012048 0.000000 0.987952 0.000000 0.686747 0.313253 0.000000 0.000000 0.289157 0.000000 0.710843 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-4 regular expression -------------------------------------------------------------------------------- A[GA]AGAG[AC][GA] -------------------------------------------------------------------------------- Time 25.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGMRR MEME-5 width = 8 sites = 70 llr = 559 E-value = 6.1e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2a:a:345 pos.-specific C :::::5:1 probability G 8:a:a:64 matrix T :::::2:: bits 2.1 * * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.0 ***** * (11.5 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGCGA consensus A AAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29691222-29691342 36 1.34e-05 CTCCGCGCGA GAGAGCGA ACATCTCTCG chrX:5047185-5047305 92 1.34e-05 aCGCACACCT GAGAGCGA GAAATGCCTG chr3R:9866093-9866213 19 1.34e-05 gcgagagtgc gagagcga gtgaatagag chr3L:1921046-1921166 56 1.34e-05 ctctcgcaAG gagagcga aacagagaga chr3R:25184678-25184798 34 1.34e-05 TCGCAACAGT GAGAGCGA AAGAGAGCGG chr2R:21843177-21843297 58 1.34e-05 gagagagaga gagagCGA GGCACTCACT chr2L:12545838-12545958 9 1.34e-05 TCGATTCG gagagcga aaaaatgagt chr3R:11760149-11760269 49 1.34e-05 cggccgaaac gagagcga gagTTGTAAC chrX:1975978-1976098 57 2.52e-05 agcacggcaa gagagcgg cgggagagag chr3L:20295242-20295362 76 2.52e-05 AGACCGAGAT GAGAGCGG GCACGGGCAC chrX:5340099-5340219 1 2.52e-05 . gagagcgg ctgagcggga chr3L:15329677-15329797 29 2.52e-05 TGAGGAAAAT GAGAGCGG TATAGTGAGG chr2R:6828191-6828311 94 2.52e-05 gagagagaga gagagcgg agaTTGAGTT chr3R:31621926-31622046 83 2.52e-05 gagagcgcgg gagagCGG CGCAGGCGCA chr3R:25472705-25472825 5 4.02e-05 CACG GAGAGCAA ATCGCAGCGA chr2R:9440857-9440977 96 4.02e-05 ATTAGAGCTG GAGAGCAA TGATGATTTG chr3L:15507599-15507719 54 4.02e-05 AACagagcca gagagcaa gagaggcaga chrX:6988990-6989110 88 4.02e-05 gagagagaga gagagCAA AGTCCTTTGT chrX:4508181-4508301 77 4.02e-05 aagagagcca gagagcaa gggagagcga chr3L:11046692-11046812 25 5.48e-05 gagtgaaaga gagagaga gttagggagt chr2L:19398084-19398204 1 5.48e-05 . gagagaga gagagagaga chr3L:18787950-18788070 4 5.48e-05 ata gagagaga aagatagagg chr3R:15664880-15665000 49 5.48e-05 gagtgagcgc gagagaga CCGAGTTCAT chr2L:17752632-17752752 99 6.82e-05 AAAACCAACA GAGAGCAG GGAAAACAGC chr3R:16719962-16720082 73 6.82e-05 AACGCGCACA GAGAGCAG ATGAATAAGA chr3R:4739013-4739133 11 6.82e-05 TTGAGTGAAG GAGAGCAG AAGCGGAAAC chr3R:5414296-5414416 110 6.82e-05 cagggcagag gagagcag cac chrX:8057921-8058041 29 8.11e-05 CTAAACACAG gagagagg gagagagagc chrX:11372836-11372956 94 8.11e-05 gagagagaga gagagagG TGGCGGCCAG chr3R:13815121-13815241 29 8.11e-05 TTGTGATTCT GAGAGAGG GGCAGAGAGA chr3R:10638864-10638984 68 9.55e-05 GAGTCCTTGG GAGAGTGA CAGCGCGAAG chr2L:15332690-15332810 76 9.55e-05 TCGAAACAGT GAGAGTGA AGAGAAGCAA chr2R:14713665-14713785 29 9.55e-05 TGCAGAAATT GAGAGTGA GAGAGAGAGT chrX:1943390-1943510 26 1.24e-04 AAAGAGAGCT GAGAGAAA TGGCCAGAGA chrX:2789867-2789987 47 1.24e-04 AAGAGAGCGC GAGAGCGC GCCAACCAAG chrX:6997430-6997550 11 1.24e-04 CGGAGAGAGG GAGAGCGC TTCAAAGAAG chr2R:8985613-8985733 42 1.24e-04 TTTAACGCGG GAGAGCGC GTTTTCAAGA chr3L:5277188-5277308 1 1.24e-04 . gagagcgc agtgcacaag chr3L:15090413-15090533 90 1.24e-04 ACCAGATCGC GAGAGAAA CAAAGAGAAA chrX:17710914-17711034 55 1.24e-04 GAGAGCGCGC GAGAGAAA AGCCGAGAGA chr2R:24712887-24713007 104 1.24e-04 ACTTCCAGCT GAGAGCGC ACTTTTCGA chr3R:23239195-23239315 2 1.37e-04 t gagagtgg agagtgtgag chrX:16089414-16089534 71 1.37e-04 aagagagata gagagTGG GGGAACAACA chrX:17651379-17651499 30 1.37e-04 ACGAGCGACT GAGAGTGG AAAGTAGAGA chrX:10209726-10209846 75 1.51e-04 GCGGGAGCAG gagagaag agattgagag chr3L:13993477-13993597 78 1.51e-04 CTgagacaca gagagaag ggaagagaga chr2L:23512804-23512924 87 1.51e-04 gaagagagaa gagagaag agagaagaga chr2L:701975-702095 51 1.51e-04 gagagagaga gagagaag aAATGCTCTC chrY:124303-124423 10 1.51e-04 aagagagaa gagagaag atggaagaga chr2L:12655868-12655988 7 1.83e-04 CCCACG AAGAGCGA GCATGCGCCG chr2L:8544065-8544185 97 1.83e-04 Cagagagagt gagagtaa gagtgggaga chr3R:2534010-2534130 29 1.83e-04 AGTGCGAAAG GAGAGTAA GAAAGCAGAA chrX:5965708-5965828 43 1.83e-04 GAGAGAGGAC GAGAGTAA GAGCGAGAGA chr3R:16899092-16899212 82 1.83e-04 AGTATTGGCT AAGAGCGA CCGCTCACTA chr3R:11254563-11254683 7 1.83e-04 AATTCG GAGAGTAA AAGGTGGGCA chr3L:21047895-21048015 72 1.83e-04 TTCTCGAGCG GAGAGTAA AGGAGCCGCT chr2R:18232612-18232732 93 1.97e-04 AGCGACTTGT GAGAGCAC GATCGAGTCG chr3L:11247946-11248066 83 2.38e-04 AAGAGAACTT AAGAGCGG CCGTTACATG chrX:8058885-8059005 31 2.55e-04 gcaaaaaacg aagagcaa agcaCCAAAA chr2R:5893629-5893749 25 2.55e-04 GCTCTCGGCT AAGAGCAA GAAACTTGAG chr2L:8031732-8031852 37 2.84e-04 TAGAACGCAA AAGAGAGA ATCGCGAGTA chr3R:19225758-19225878 78 3.14e-04 AGCAACTACT GAGAGAAC TGAGAGAGCA chr2R:17794196-17794316 41 3.29e-04 cagagcgaga aagagagg acagagcgcc chr3L:4363641-4363761 68 3.29e-04 GAAAAGCAGA AAGAGAGG ACAATTGGAA chr3L:3545019-3545139 41 3.92e-04 AACCCCTTTT AAGAGCGC CTTTTCCACC chr3R:17920443-17920563 66 3.92e-04 CTCGAGGAGT AAGAGAAA GCAGCCATTA chr3L:7808928-7809048 35 4.07e-04 GAGAACCCGA AAGAGTGG CAAAGAGAGC chr2L:16520622-16520742 78 4.07e-04 GAAGAAGCCA AAGAGTGG GACAGAAAGA chr3R:15476430-15476550 112 4.57e-04 CGCGGCTTAA AAGAGCAC T chr2R:18401877-18401997 106 4.89e-04 CTCTTAATTT AAGAGAGC TTCCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29691222-29691342 1.3e-05 35_[+5]_77 chrX:5047185-5047305 1.3e-05 91_[+5]_21 chr3R:9866093-9866213 1.3e-05 18_[+5]_94 chr3L:1921046-1921166 1.3e-05 55_[+5]_57 chr3R:25184678-25184798 1.3e-05 33_[+5]_79 chr2R:21843177-21843297 1.3e-05 57_[+5]_55 chr2L:12545838-12545958 1.3e-05 8_[+5]_104 chr3R:11760149-11760269 1.3e-05 48_[+5]_64 chrX:1975978-1976098 2.5e-05 56_[+5]_56 chr3L:20295242-20295362 2.5e-05 75_[+5]_37 chrX:5340099-5340219 2.5e-05 [+5]_112 chr3L:15329677-15329797 2.5e-05 28_[+5]_84 chr2R:6828191-6828311 2.5e-05 93_[+5]_19 chr3R:31621926-31622046 2.5e-05 82_[+5]_30 chr3R:25472705-25472825 4e-05 4_[+5]_108 chr2R:9440857-9440977 4e-05 95_[+5]_17 chr3L:15507599-15507719 4e-05 53_[+5]_59 chrX:6988990-6989110 4e-05 87_[+5]_25 chrX:4508181-4508301 4e-05 76_[+5]_36 chr3L:11046692-11046812 5.5e-05 24_[+5]_88 chr2L:19398084-19398204 5.5e-05 [+5]_112 chr3L:18787950-18788070 5.5e-05 3_[+5]_109 chr3R:15664880-15665000 5.5e-05 48_[+5]_64 chr2L:17752632-17752752 6.8e-05 98_[+5]_14 chr3R:16719962-16720082 6.8e-05 72_[+5]_40 chr3R:4739013-4739133 6.8e-05 10_[+5]_102 chr3R:5414296-5414416 6.8e-05 109_[+5]_3 chrX:8057921-8058041 8.1e-05 28_[+5]_84 chrX:11372836-11372956 8.1e-05 93_[+5]_19 chr3R:13815121-13815241 8.1e-05 28_[+5]_84 chr3R:10638864-10638984 9.5e-05 67_[+5]_45 chr2L:15332690-15332810 9.5e-05 75_[+5]_37 chr2R:14713665-14713785 9.5e-05 28_[+5]_84 chrX:1943390-1943510 0.00012 25_[+5]_87 chrX:2789867-2789987 0.00012 46_[+5]_66 chrX:6997430-6997550 0.00012 10_[+5]_102 chr2R:8985613-8985733 0.00012 41_[+5]_71 chr3L:5277188-5277308 0.00012 [+5]_112 chr3L:15090413-15090533 0.00012 89_[+5]_23 chrX:17710914-17711034 0.00012 54_[+5]_58 chr2R:24712887-24713007 0.00012 103_[+5]_9 chr3R:23239195-23239315 0.00014 1_[+5]_111 chrX:16089414-16089534 0.00014 70_[+5]_42 chrX:17651379-17651499 0.00014 29_[+5]_83 chrX:10209726-10209846 0.00015 74_[+5]_38 chr3L:13993477-13993597 0.00015 77_[+5]_35 chr2L:23512804-23512924 0.00015 86_[+5]_26 chr2L:701975-702095 0.00015 50_[+5]_62 chrY:124303-124423 0.00015 9_[+5]_103 chr2L:12655868-12655988 0.00018 6_[+5]_106 chr2L:8544065-8544185 0.00018 96_[+5]_16 chr3R:2534010-2534130 0.00018 28_[+5]_84 chrX:5965708-5965828 0.00018 42_[+5]_70 chr3R:16899092-16899212 0.00018 81_[+5]_31 chr3R:11254563-11254683 0.00018 6_[+5]_106 chr3L:21047895-21048015 0.00018 71_[+5]_41 chr2R:18232612-18232732 0.0002 92_[+5]_20 chr3L:11247946-11248066 0.00024 82_[+5]_30 chrX:8058885-8059005 0.00025 30_[+5]_82 chr2R:5893629-5893749 0.00025 24_[+5]_88 chr2L:8031732-8031852 0.00028 36_[+5]_76 chr3R:19225758-19225878 0.00031 77_[+5]_35 chr2R:17794196-17794316 0.00033 40_[+5]_72 chr3L:4363641-4363761 0.00033 67_[+5]_45 chr3L:3545019-3545139 0.00039 40_[+5]_72 chr3R:17920443-17920563 0.00039 65_[+5]_47 chr3L:7808928-7809048 0.00041 34_[+5]_78 chr2L:16520622-16520742 0.00041 77_[+5]_35 chr3R:15476430-15476550 0.00046 111_[+5]_1 chr2R:18401877-18401997 0.00049 105_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGMRR width=8 seqs=70 chr3R:29691222-29691342 ( 36) GAGAGCGA 1 chrX:5047185-5047305 ( 92) GAGAGCGA 1 chr3R:9866093-9866213 ( 19) GAGAGCGA 1 chr3L:1921046-1921166 ( 56) GAGAGCGA 1 chr3R:25184678-25184798 ( 34) GAGAGCGA 1 chr2R:21843177-21843297 ( 58) GAGAGCGA 1 chr2L:12545838-12545958 ( 9) GAGAGCGA 1 chr3R:11760149-11760269 ( 49) GAGAGCGA 1 chrX:1975978-1976098 ( 57) GAGAGCGG 1 chr3L:20295242-20295362 ( 76) GAGAGCGG 1 chrX:5340099-5340219 ( 1) GAGAGCGG 1 chr3L:15329677-15329797 ( 29) GAGAGCGG 1 chr2R:6828191-6828311 ( 94) GAGAGCGG 1 chr3R:31621926-31622046 ( 83) GAGAGCGG 1 chr3R:25472705-25472825 ( 5) GAGAGCAA 1 chr2R:9440857-9440977 ( 96) GAGAGCAA 1 chr3L:15507599-15507719 ( 54) GAGAGCAA 1 chrX:6988990-6989110 ( 88) GAGAGCAA 1 chrX:4508181-4508301 ( 77) GAGAGCAA 1 chr3L:11046692-11046812 ( 25) GAGAGAGA 1 chr2L:19398084-19398204 ( 1) GAGAGAGA 1 chr3L:18787950-18788070 ( 4) GAGAGAGA 1 chr3R:15664880-15665000 ( 49) GAGAGAGA 1 chr2L:17752632-17752752 ( 99) GAGAGCAG 1 chr3R:16719962-16720082 ( 73) GAGAGCAG 1 chr3R:4739013-4739133 ( 11) GAGAGCAG 1 chr3R:5414296-5414416 ( 110) GAGAGCAG 1 chrX:8057921-8058041 ( 29) GAGAGAGG 1 chrX:11372836-11372956 ( 94) GAGAGAGG 1 chr3R:13815121-13815241 ( 29) GAGAGAGG 1 chr3R:10638864-10638984 ( 68) GAGAGTGA 1 chr2L:15332690-15332810 ( 76) GAGAGTGA 1 chr2R:14713665-14713785 ( 29) GAGAGTGA 1 chrX:1943390-1943510 ( 26) GAGAGAAA 1 chrX:2789867-2789987 ( 47) GAGAGCGC 1 chrX:6997430-6997550 ( 11) GAGAGCGC 1 chr2R:8985613-8985733 ( 42) GAGAGCGC 1 chr3L:5277188-5277308 ( 1) GAGAGCGC 1 chr3L:15090413-15090533 ( 90) GAGAGAAA 1 chrX:17710914-17711034 ( 55) GAGAGAAA 1 chr2R:24712887-24713007 ( 104) GAGAGCGC 1 chr3R:23239195-23239315 ( 2) GAGAGTGG 1 chrX:16089414-16089534 ( 71) GAGAGTGG 1 chrX:17651379-17651499 ( 30) GAGAGTGG 1 chrX:10209726-10209846 ( 75) GAGAGAAG 1 chr3L:13993477-13993597 ( 78) GAGAGAAG 1 chr2L:23512804-23512924 ( 87) GAGAGAAG 1 chr2L:701975-702095 ( 51) GAGAGAAG 1 chrY:124303-124423 ( 10) GAGAGAAG 1 chr2L:12655868-12655988 ( 7) AAGAGCGA 1 chr2L:8544065-8544185 ( 97) GAGAGTAA 1 chr3R:2534010-2534130 ( 29) GAGAGTAA 1 chrX:5965708-5965828 ( 43) GAGAGTAA 1 chr3R:16899092-16899212 ( 82) AAGAGCGA 1 chr3R:11254563-11254683 ( 7) GAGAGTAA 1 chr3L:21047895-21048015 ( 72) GAGAGTAA 1 chr2R:18232612-18232732 ( 93) GAGAGCAC 1 chr3L:11247946-11248066 ( 83) AAGAGCGG 1 chrX:8058885-8059005 ( 31) AAGAGCAA 1 chr2R:5893629-5893749 ( 25) AAGAGCAA 1 chr2L:8031732-8031852 ( 37) AAGAGAGA 1 chr3R:19225758-19225878 ( 78) GAGAGAAC 1 chr2R:17794196-17794316 ( 41) AAGAGAGG 1 chr3L:4363641-4363761 ( 68) AAGAGAGG 1 chr3L:3545019-3545139 ( 41) AAGAGCGC 1 chr3R:17920443-17920563 ( 66) AAGAGAAA 1 chr3L:7808928-7809048 ( 35) AAGAGTGG 1 chr2L:16520622-16520742 ( 78) AAGAGTGG 1 chr3R:15476430-15476550 ( 112) AAGAGCAC 1 chr2R:18401877-18401997 ( 106) AAGAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 6.1e-017 -40 -1277 177 -1277 192 -1277 -1277 -1277 -1277 -1277 209 -1277 192 -1277 -1277 -1277 -1277 -1277 209 -1277 19 109 -1277 -49 60 -1277 136 -1277 88 -76 67 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 6.1e-017 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.514286 0.000000 0.185714 0.400000 0.000000 0.600000 0.000000 0.485714 0.142857 0.371429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGMRR MEME-5 regular expression -------------------------------------------------------------------------------- [GA]AGAG[CA][GA][AG] -------------------------------------------------------------------------------- Time 31.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrY:124303-124423 1.80e-03 1_[+4(4.43e-05)]_13_[+4(4.43e-05)]_\ 6_[+4(4.43e-05)]_6_[+4(4.43e-05)]_62 chr2R:14715857-14715977 2.74e-03 71_[+1(1.59e-05)]_[+1(1.59e-05)]_6_\ [+1(1.59e-05)]_19 chr2R:19411413-19411533 1.10e-05 31_[+2(1.46e-05)]_17_[+5(2.52e-05)]_\ 56 chr2L:8542797-8542917 1.24e-04 120 chr3L:21047895-21048015 6.92e-05 28_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_68 chr2R:14959032-14959152 4.25e-03 93_[+1(1.59e-05)]_[+1(1.59e-05)]_11 chr3R:17666163-17666283 3.96e-03 6_[+1(1.59e-05)]_[+3(5.82e-05)]_98 chr3L:12804401-12804521 2.69e-03 85_[+3(4.49e-05)]_8_[+1(1.59e-05)]_\ 11 chrX:14082849-14082969 7.16e-04 13_[+5(4.02e-05)]_13_[+5(2.52e-05)]_\ 78 chr3R:17920443-17920563 7.81e-05 3_[+5(1.34e-05)]_77_[+4(6.08e-05)]_\ 24 chrX:15633505-15633625 4.70e-03 14_[+1(1.59e-05)]_[+1(1.59e-05)]_90 chr2L:12505015-12505135 7.59e-02 120 chrX:10823599-10823719 4.43e-03 17_[+1(1.59e-05)]_25_[+3(9.14e-05)]_\ 14_[+3(5.82e-05)]_40 chr3R:11254563-11254683 7.70e-05 32_[+1(1.59e-05)]_19_[+1(1.59e-05)]_\ 2_[+1(1.59e-05)]_43 chr3R:1441423-1441543 8.53e-01 120 chr3L:16029152-16029272 3.74e-06 28_[+5(6.82e-05)]_64_[+1(9.18e-05)]_\ 12 chr2R:24712887-24713007 3.29e-06 [+2(1.46e-05)]_11_[+2(2.79e-05)]_18_\ [+2(2.79e-05)]_67 chrX:17651379-17651499 7.80e-05 42_[+2(1.46e-05)]_70 chr3R:13815121-13815241 1.91e-06 28_[+5(8.11e-05)]_3_[+2(1.46e-05)]_\ 24_[+4(7.58e-05)]_41 chr3L:18792908-18793028 2.05e-04 84_[+1(1.59e-05)]_[+1(1.59e-05)]_20 chr2R:14713665-14713785 8.92e-05 35_[+2(1.46e-05)]_38_[+2(1.46e-05)]_\ 31 chr2L:12435922-12436042 9.92e-01 120 chr3R:31621926-31622046 4.55e-05 53_[+4(4.43e-05)]_6_[+2(1.46e-05)]_\ 7_[+5(2.52e-05)]_30 chr3L:6997556-6997676 4.27e-03 71_[+1(3.02e-05)]_23_[+1(1.59e-05)]_\ [+1(1.59e-05)]_2 chr3L:11428536-11428656 1.07e-05 71_[+5(4.02e-05)]_41 chr3R:18849332-18849452 2.56e-03 71_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_[+3(9.14e-05)]_17 chr2R:18231251-18231371 1.82e-04 25_[+1(1.59e-05)]_1_[+3(5.82e-05)]_\ [+1(1.59e-05)]_70 chrX:17710914-17711034 2.73e-04 43_[+2(2.79e-05)]_14_[+2(4.13e-05)]_\ 47 chr3R:16899092-16899212 4.10e-05 15_[+4(9.09e-05)]_32_[+4(6.08e-05)]_\ 57 chrX:2255120-2255240 8.56e-02 120 chr3L:21916474-21916594 2.05e-01 120 chr3L:14219738-14219858 2.80e-03 83_[+1(6.16e-05)]_[+1(3.02e-05)]_21 chr3L:18139223-18139343 2.80e-02 120 chr2L:7245424-7245544 2.77e-04 47_[+1(6.16e-05)]_16_[+1(4.73e-05)]_\ 28_[+1(4.73e-05)]_5 chr2R:10225166-10225286 4.16e-07 2_[+2(1.46e-05)]_110 chr2L:15332690-15332810 4.46e-04 39_[+5(1.34e-05)]_28_[+5(9.55e-05)]_\ 37 chr2R:25114338-25114458 4.51e-04 84_[+3(5.82e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_12 chr2R:5893629-5893749 8.02e-05 90_[+1(4.73e-05)]_5_[+3(4.49e-05)]_\ 9 chr2L:3545398-3545518 8.50e-04 8_[+4(9.09e-05)]_53_[+5(2.52e-05)]_\ 43 chr2R:6828191-6828311 3.47e-09 50_[+1(3.02e-05)]_10_[+2(1.46e-05)]_\ 4_[+2(1.46e-05)]_[+2(1.46e-05)]_24 chrX:5965708-5965828 5.78e-07 31_[+2(1.46e-05)]_81 chr3R:22899119-22899239 4.03e-06 5_[+2(7.06e-05)]_12_[+1(3.02e-05)]_\ 87 chr3R:2518751-2518871 9.73e-01 120 chr2L:701975-702095 6.82e-09 33_[+2(1.46e-05)]_[+2(1.46e-05)]_\ [+4(4.43e-05)]_30_[+1(3.02e-05)]_25 chrX:22373618-22373738 3.41e-01 120 chrM:4068-4188 6.62e-01 120 chr3L:21047470-21047590 3.71e-03 93_[+1(1.59e-05)]_19 chr2R:7146985-7147105 8.58e-05 41_[+2(1.46e-05)]_71 chr2R:19141956-19142076 7.96e-09 17_[+2(1.46e-05)]_65_[+1(3.02e-05)]_\ 10_[+1(1.59e-05)]_4 chrX:16089414-16089534 8.62e-05 33_[+2(1.46e-05)]_2_[+2(1.46e-05)]_\ 8_[+4(6.08e-05)]_53 chrX:15163027-15163147 1.44e-04 68_[+1(1.59e-05)]_[+1(1.59e-05)]_36 chr3R:15664880-15665000 8.90e-05 27_[+2(1.46e-05)]_1_[+5(9.55e-05)]_\ 3_[+2(4.13e-05)]_29_[+4(6.08e-05)]_28 chrX:1234262-1234382 2.50e-04 3_[+2(1.46e-05)]_11_[+4(4.43e-05)]_\ 25_[+2(9.93e-05)]_57 chr3L:15329677-15329797 8.70e-04 28_[+5(2.52e-05)]_12_[+5(1.34e-05)]_\ 64 chr2R:16583522-16583642 3.51e-05 29_[+2(1.46e-05)]_[+2(1.46e-05)]_75 chrX:3332636-3332756 1.08e-01 120 chr2L:23512804-23512924 1.80e-03 3_[+4(4.43e-05)]_6_[+4(4.43e-05)]_6_\ [+4(4.43e-05)]_6_[+4(4.43e-05)]_11_[+4(4.43e-05)]_6_[+4(4.43e-05)]_6_\ [+4(4.43e-05)]_6_[+4(4.43e-05)]_6 chr3R:17557594-17557714 1.23e-07 21_[+4(6.08e-05)]_2_[+3(4.49e-05)]_\ 11_[+1(1.59e-05)]_62 chr2R:11134452-11134572 9.88e-01 120 chr3R:5414296-5414416 2.62e-06 11_[+1(1.59e-05)]_[+1(1.59e-05)]_67_\ [+5(6.82e-05)]_7_[+5(6.82e-05)]_3 chr3R:2534010-2534130 2.68e-02 120 chr3R:23239195-23239315 2.24e-03 120 chr3L:9047086-9047206 7.34e-01 120 chr3L:15090413-15090533 1.33e-03 57_[+4(4.43e-05)]_55 chrM:1256-1376 9.94e-01 120 chr3L:4363641-4363761 1.84e-05 4_[+2(1.46e-05)]_15_[+5(1.34e-05)]_\ 31_[+4(6.08e-05)]_46 chr3R:11760149-11760269 2.97e-05 9_[+4(9.09e-05)]_16_[+5(2.52e-05)]_\ 7_[+5(1.34e-05)]_64 chr2L:12545838-12545958 2.51e-05 8_[+5(1.34e-05)]_11_[+2(1.46e-05)]_\ 4_[+2(1.46e-05)]_73 chrX:16526224-16526344 2.03e-09 19_[+5(1.34e-05)]_27_[+2(4.13e-05)]_\ 8_[+1(1.59e-05)]_42 chrX:15076698-15076818 1.97e-06 56_[+5(6.82e-05)]_38_[+1(4.73e-05)]_\ 10 chrX:12007679-12007799 3.92e-03 71_[+1(1.59e-05)]_2_[+1(1.59e-05)]_\ 31 chr3L:13993477-13993597 8.55e-05 76_[+4(4.43e-05)]_4_[+2(1.46e-05)]_\ 3_[+2(1.46e-05)]_13 chr2L:23371749-23371869 4.52e-01 120 chr2L:826510-826630 4.82e-03 56_[+1(1.59e-05)]_5_[+1(1.59e-05)]_\ [+1(1.59e-05)]_11_[+1(1.59e-05)]_16 chr3L:2780899-2781019 1.00e+00 120 chrX:395925-396045 3.23e-04 34_[+1(1.59e-05)]_[+1(4.73e-05)]_70 chr3R:25208358-25208478 3.91e-03 65_[+1(4.73e-05)]_1_[+1(1.59e-05)]_\ 38 chr3R:4739013-4739133 1.21e-05 10_[+5(6.82e-05)]_12_[+2(2.79e-05)]_\ [+4(9.09e-05)]_1_[+4(4.43e-05)]_65 chr3R:15476430-15476550 7.88e-05 71_[+2(2.79e-05)]_9_[+4(6.08e-05)]_\ 24 chr2R:21843177-21843297 7.47e-06 34_[+2(1.46e-05)]_[+2(1.46e-05)]_7_\ [+5(1.34e-05)]_15_[+2(1.46e-05)]_32 chr2R:24736756-24736876 1.89e-06 23_[+5(2.52e-05)]_2_[+3(5.82e-05)]_\ 10_[+3(5.82e-05)]_61 chr2L:7249505-7249625 3.51e-03 75_[+1(1.59e-05)]_37 chr3L:6943459-6943579 2.85e-03 120 chr3R:17566966-17567086 4.79e-03 17_[+3(5.82e-05)]_8_[+1(3.02e-05)]_\ 50_[+1(1.59e-05)]_[+1(1.59e-05)]_13 chrX:16087608-16087728 1.43e-02 120 chr3L:872153-872273 8.11e-04 [+4(7.58e-05)]_1_[+5(5.48e-05)]_103 chr3R:19225758-19225878 8.55e-04 88_[+5(6.82e-05)]_14_[+4(4.43e-05)]_\ 2 chr3R:17805186-17805306 9.75e-01 120 chr2R:6196233-6196353 9.01e-02 120 chr2R:16104010-16104130 5.14e-01 120 chr2R:13991754-13991874 3.16e-03 45_[+1(4.73e-05)]_14_[+1(3.02e-05)]_\ 45 chr2R:8272781-8272901 2.40e-04 23_[+1(1.59e-05)]_80_[+1(3.02e-05)]_\ 1 chr2L:1006667-1006787 9.87e-01 120 chr2R:16499924-16500044 5.26e-07 6_[+1(4.73e-05)]_18_[+2(4.13e-05)]_\ 80 chrX:4508181-4508301 1.69e-05 53_[+4(6.08e-05)]_4_[+4(6.08e-05)]_\ 3_[+5(4.02e-05)]_2_[+5(1.34e-05)]_2_[+5(9.55e-05)]_16 chr2R:15485609-15485729 9.81e-01 120 chr2R:18232612-18232732 2.77e-05 70_[+2(1.46e-05)]_1_[+5(1.34e-05)]_\ 33 chr3L:18787950-18788070 2.22e-05 2_[+2(1.46e-05)]_37_[+2(1.46e-05)]_\ [+2(1.46e-05)]_[+2(1.46e-05)]_[+2(1.46e-05)]_41 chr2L:7495527-7495647 1.93e-03 19_[+3(9.14e-05)]_70_[+1(4.73e-05)]_\ 15 chr2L:12854649-12854769 8.50e-06 33_[+3(5.82e-05)]_6_[+1(3.02e-05)]_\ 65 chr3L:2824859-2824979 4.23e-03 9_[+1(1.59e-05)]_24_[+1(1.59e-05)]_\ 71 chrX:8215091-8215211 7.48e-04 6_[+1(4.73e-05)]_12_[+1(1.59e-05)]_\ 86 chr3R:9534701-9534821 2.16e-02 60_[+1(6.16e-05)]_32_[+1(4.73e-05)]_\ [+3(5.82e-05)]_4 chrX:7697436-7697556 9.98e-02 120 chr3L:2585912-2586032 1.04e-02 91_[+1(3.02e-05)]_2_[+3(4.49e-05)]_\ 2_[+1(4.73e-05)]_1 chr3L:1098870-1098990 6.20e-06 30_[+1(1.59e-05)]_[+1(1.59e-05)]_4_\ [+1(4.73e-05)]_62 chr2L:14054431-14054551 2.99e-08 7_[+2(1.46e-05)]_7_[+1(4.73e-05)]_\ 90 chr3R:10638864-10638984 1.11e-04 27_[+2(1.46e-05)]_32_[+5(9.55e-05)]_\ 45 chr3R:25184678-25184798 1.96e-05 33_[+5(1.34e-05)]_2_[+5(2.52e-05)]_\ 3_[+4(6.08e-05)]_2_[+2(4.13e-05)]_9_[+5(1.34e-05)]_31 chr3R:31712992-31713112 2.21e-01 120 chr3R:30090390-30090510 1.56e-05 1_[+3(5.82e-05)]_111 chr3L:1921046-1921166 4.58e-08 55_[+5(1.34e-05)]_3_[+2(1.46e-05)]_\ 2_[+2(1.46e-05)]_1_[+5(6.82e-05)]_27 chrX:7196104-7196224 4.83e-03 [+3(9.14e-05)]_36_[+1(1.59e-05)]_2_\ [+1(6.16e-05)]_11_[+1(3.02e-05)]_39 chr3L:5277188-5277308 7.06e-05 20_[+4(6.08e-05)]_1_[+2(1.46e-05)]_\ 7_[+4(9.09e-05)]_68 chr2R:10798778-10798898 4.05e-07 22_[+2(1.46e-05)]_90 chr2L:13878112-13878232 1.43e-04 34_[+1(1.59e-05)]_6_[+1(4.73e-05)]_\ 41_[+1(1.59e-05)]_15 chr2R:14041194-14041314 4.83e-03 14_[+1(1.59e-05)]_4_[+1(3.02e-05)]_\ [+3(5.82e-05)]_4_[+1(6.16e-05)]_13_[+3(9.14e-05)]_45 chr3L:11247946-11248066 1.09e-04 120 chr2R:12119091-12119211 4.83e-03 30_[+1(1.59e-05)]_82 chr2R:13043335-13043455 9.99e-01 120 chrX:6988990-6989110 1.50e-05 38_[+4(9.09e-05)]_18_[+2(1.46e-05)]_\ [+2(1.46e-05)]_[+2(1.46e-05)]_32 chr2L:2753714-2753834 2.05e-01 120 chrX:11372836-11372956 6.15e-05 66_[+2(1.46e-05)]_[+2(1.46e-05)]_2_\ [+2(1.46e-05)]_[+2(1.46e-05)]_20 chr2R:10219681-10219801 1.71e-02 74_[+3(4.49e-05)]_[+3(5.82e-05)]_30 chrM:6506-6626 9.99e-01 120 chr3R:17776445-17776565 5.48e-05 11_[+2(1.46e-05)]_[+2(1.46e-05)]_93 chr3R:6405342-6405462 8.66e-03 71_[+1(3.02e-05)]_16_[+1(3.02e-05)]_\ 6_[+1(3.02e-05)]_3 chr3L:10308050-10308170 5.68e-07 29_[+2(2.79e-05)]_11_[+1(9.18e-05)]_\ 64 chr2R:13622867-13622987 1.53e-07 4_[+2(1.46e-05)]_6_[+2(1.46e-05)]_\ 94 chrX:6353093-6353213 2.69e-05 14_[+4(9.09e-05)]_6_[+2(1.46e-05)]_\ 11_[+2(1.46e-05)]_65 chrX:1964939-1965059 4.52e-03 29_[+3(9.14e-05)]_2_[+1(3.02e-05)]_\ 8_[+1(1.59e-05)]_6_[+1(1.59e-05)]_[+1(1.59e-05)]_35 chr3R:29313197-29313317 8.91e-01 120 chr2R:18401877-18401997 1.17e-03 120 chr3R:22042670-22042790 1.52e-05 88_[+1(3.02e-05)]_[+1(3.02e-05)]_16 chrX:19718491-19718611 1.97e-05 39_[+5(1.34e-05)]_57_[+5(1.34e-05)]_\ [+5(6.82e-05)] chr2R:17794196-17794316 9.04e-05 39_[+4(6.08e-05)]_17_[+2(1.46e-05)]_\ [+2(1.46e-05)]_40 chrX:5636582-5636702 1.61e-05 102_[+1(1.59e-05)]_2_[+1(1.59e-05)] chr2L:6252825-6252945 3.13e-06 76_[+4(6.08e-05)]_3_[+1(9.18e-05)]_\ 25 chr3R:9866093-9866213 2.86e-05 18_[+5(1.34e-05)]_76_[+2(1.46e-05)]_\ [+2(1.46e-05)]_2 chr2L:2242213-2242333 4.32e-08 1_[+2(1.46e-05)]_[+2(1.46e-05)]_\ [+2(1.46e-05)]_68_[+3(5.82e-05)]_19 chr3L:9695460-9695580 3.14e-04 55_[+2(2.79e-05)]_2_[+2(2.79e-05)]_\ 47 chrX:18621900-18622020 9.93e-01 120 chr3L:18846268-18846388 4.03e-03 40_[+1(1.59e-05)]_[+1(1.59e-05)]_6_\ [+1(1.59e-05)]_50 chrX:5340099-5340219 6.46e-05 [+5(2.52e-05)]_32_[+5(1.34e-05)]_72 chrX:10309152-10309272 7.11e-03 21_[+1(4.73e-05)]_91 chrX:12546339-12546459 1.71e-06 26_[+3(4.49e-05)]_[+1(3.02e-05)]_16_\ [+1(3.02e-05)]_22_[+5(2.52e-05)]_24 chrX:10209726-10209846 8.91e-05 41_[+4(9.09e-05)]_39_[+2(1.46e-05)]_\ 24 chr2L:12975082-12975202 4.54e-07 1_[+5(1.34e-05)]_111 chr2R:17796099-17796219 2.30e-02 54_[+3(4.49e-05)]_21_[+3(9.14e-05)]_\ 7_[+1(9.18e-05)]_14 chr2R:8985613-8985733 2.09e-04 64_[+5(2.52e-05)]_48 chrX:5770884-5771004 1.98e-07 44_[+1(1.59e-05)]_50_[+4(4.43e-05)]_\ 10 chr2R:21128032-21128152 4.33e-03 23_[+3(5.82e-05)]_89 chr3L:13227731-13227851 1.85e-06 18_[+2(4.13e-05)]_44_[+2(4.13e-05)]_\ 42 chr3R:28635631-28635751 7.97e-01 120 chrX:8057921-8058041 2.54e-05 27_[+2(7.06e-05)]_5_[+5(1.34e-05)]_\ 15_[+5(4.02e-05)]_5_[+4(9.09e-05)]_36 chr3R:4175239-4175359 1.94e-02 120 chr3R:30389198-30389318 9.86e-03 32_[+1(3.02e-05)]_80 chr3R:16719962-16720082 4.10e-04 35_[+4(6.08e-05)]_13_[+4(4.43e-05)]_\ 8_[+5(6.82e-05)]_40 chrM:8275-8395 7.41e-01 120 chr3R:16978047-16978167 1.00e+00 120 chr2R:8862562-8862682 1.23e-06 53_[+2(4.13e-05)]_14_[+3(4.49e-05)]_\ 37 chrX:3451388-3451508 1.39e-07 18_[+4(4.43e-05)]_41_[+1(4.73e-05)]_\ 7_[+1(3.02e-05)]_30 chr2L:19398084-19398204 1.32e-06 1_[+2(1.46e-05)]_[+2(1.46e-05)]_6_\ [+2(1.46e-05)]_89 chr4:960186-960306 4.24e-05 103_[+5(1.34e-05)]_[+5(2.52e-05)]_1 chr2R:15698127-15698247 9.98e-01 120 chr2L:17752632-17752752 7.25e-05 1_[+4(7.58e-05)]_28_[+2(1.46e-05)]_\ [+2(1.46e-05)]_45_[+5(6.82e-05)]_14 chr3L:11046692-11046812 8.00e-05 21_[+2(1.46e-05)]_14_[+2(7.06e-05)]_\ 17_[+2(1.46e-05)]_[+2(1.46e-05)]_[+2(1.46e-05)]_28 chrX:14212217-14212337 2.35e-07 9_[+5(1.34e-05)]_68_[+1(4.73e-05)]_\ 2_[+1(1.59e-05)]_17 chr3L:9466049-9466169 4.83e-03 [+1(1.59e-05)]_39_[+1(3.02e-05)]_17_\ [+3(4.49e-05)]_40 chrX:6997430-6997550 1.11e-05 1_[+2(7.06e-05)]_111 chr2R:16196389-16196509 9.18e-01 120 chr3L:17989466-17989586 1.36e-04 13_[+1(3.02e-05)]_1_[+1(1.59e-05)]_\ 90 chr3L:15507599-15507719 7.05e-05 53_[+5(4.02e-05)]_21_[+2(1.46e-05)]_\ [+2(1.46e-05)]_22 chrX:2789867-2789987 8.44e-05 37_[+2(2.79e-05)]_[+2(9.93e-05)]_23_\ [+2(1.46e-05)]_[+2(1.46e-05)]_28 chrX:5047185-5047305 1.10e-06 45_[+2(7.06e-05)]_8_[+2(1.46e-05)]_\ [+4(4.43e-05)]_14_[+5(1.34e-05)]_21 chr3R:15419373-15419493 1.54e-01 120 chr2L:16520622-16520742 5.80e-05 39_[+2(2.79e-05)]_73 chr2L:594799-594919 3.40e-03 103_[+1(1.59e-05)]_9 chr2R:9440857-9440977 9.20e-05 27_[+2(4.13e-05)]_8_[+2(2.79e-05)]_\ 44_[+5(4.02e-05)]_17 chr3R:12477379-12477499 9.83e-01 120 chr2R:13502045-13502165 5.14e-03 [+3(9.14e-05)]_2_[+1(4.73e-05)]_4_\ [+3(9.14e-05)]_90 chrX:6981799-6981919 2.21e-04 99_[+1(9.18e-05)]_13 chr2R:1515179-1515299 3.84e-01 120 chr3R:4174508-4174628 1.67e-06 19_[+5(1.34e-05)]_26_[+2(2.79e-05)]_\ 59 chr2L:8544065-8544185 3.59e-06 87_[+2(1.46e-05)]_17_[+5(6.82e-05)] chr3L:1102494-1102614 2.89e-07 14_[+1(1.59e-05)]_6_[+2(4.13e-05)]_\ 74_[+1(3.02e-05)]_2 chrX:13747278-13747398 4.59e-03 30_[+1(1.59e-05)]_24_[+1(1.59e-05)]_\ 12_[+1(1.59e-05)]_6_[+1(4.73e-05)]_16 chr3L:22910336-22910456 1.21e-03 16_[+3(4.49e-05)]_62_[+1(4.73e-05)]_\ 26 chr3L:15014469-15014589 9.96e-01 120 chrX:5613175-5613295 5.93e-01 120 chrX:8215953-8216073 1.64e-04 75_[+1(3.02e-05)]_14_[+1(1.59e-05)]_\ 15 chr3L:11124054-11124174 5.72e-07 23_[+4(9.09e-05)]_18_[+1(3.02e-05)]_\ 63 chr2R:14768759-14768879 4.32e-02 31_[+3(5.82e-05)]_81 chr3R:16449754-16449874 2.89e-02 19_[+1(4.73e-05)]_6_[+1(6.16e-05)]_\ 79 chr2L:18845037-18845157 3.35e-03 48_[+1(1.59e-05)]_8_[+1(1.59e-05)]_\ 6_[+1(1.59e-05)]_[+1(1.59e-05)]_26 chr3L:26012678-26012798 2.25e-03 13_[+2(4.13e-05)]_99 chr3L:20295242-20295362 1.00e-04 52_[+5(2.52e-05)]_15_[+5(2.52e-05)]_\ 37 chr3R:29691222-29691342 4.96e-07 35_[+5(1.34e-05)]_27_[+2(1.46e-05)]_\ [+2(1.46e-05)]_34 chr3L:16047253-16047373 2.03e-09 44_[+5(1.34e-05)]_41_[+1(1.59e-05)]_\ 2_[+1(1.59e-05)]_9 chr3L:21644713-21644833 1.40e-03 92_[+2(7.06e-05)]_20 chr3R:25472705-25472825 1.55e-05 4_[+5(4.02e-05)]_17_[+4(4.43e-05)]_\ 7_[+5(1.34e-05)]_68 chrX:5047942-5048062 2.24e-09 13_[+4(6.08e-05)]_16_[+2(1.46e-05)]_\ 64_[+1(1.59e-05)]_3 chrX:8058885-8059005 8.81e-05 80_[+2(1.46e-05)]_32 chr2L:2451039-2451159 2.90e-03 60_[+1(6.16e-05)]_12_[+1(1.59e-05)]_\ 32 chr3R:5701220-5701340 3.76e-03 [+1(1.59e-05)]_10_[+1(1.59e-05)]_\ [+1(1.59e-05)]_[+1(1.59e-05)]_78 chr2L:13550761-13550881 1.18e-02 31_[+1(3.02e-05)]_17_[+1(9.18e-05)]_\ 56 chr3R:3374279-3374399 9.55e-01 120 chr2L:8031732-8031852 4.63e-05 37_[+4(4.43e-05)]_21_[+2(1.46e-05)]_\ 23_[+5(2.52e-05)]_15 chrX:1975978-1976098 1.23e-05 56_[+5(2.52e-05)]_4_[+2(1.46e-05)]_\ [+2(1.46e-05)]_36 chr2L:12546102-12546222 7.61e-03 8_[+3(9.14e-05)]_104 chr3L:19908528-19908648 6.84e-01 120 chrX:9639194-9639314 7.04e-05 69_[+5(1.34e-05)]_43 chr2L:3538992-3539112 5.79e-02 73_[+1(9.18e-05)]_39 chr3R:27580585-27580705 6.24e-06 27_[+2(2.79e-05)]_85 chr2L:3534252-3534372 3.30e-06 15_[+1(6.16e-05)]_35_[+4(9.09e-05)]_\ 54 chr3L:15079485-15079605 2.03e-07 6_[+2(2.79e-05)]_47_[+1(4.73e-05)]_\ 51 chr2L:1491928-1492048 9.99e-01 120 chr3L:3545019-3545139 1.31e-05 73_[+1(1.59e-05)]_39 chrM:4393-4513 6.54e-01 120 chr3L:14621632-14621752 9.93e-01 120 chr2R:21720575-21720695 6.16e-01 120 chr2R:10430487-10430607 6.04e-04 10_[+1(1.59e-05)]_17_[+1(1.59e-05)]_\ 77 chr3R:11237640-11237760 6.46e-01 120 chrX:6013346-6013466 3.06e-03 16_[+1(1.59e-05)]_[+1(1.59e-05)]_88 chrX:5524698-5524818 9.49e-02 120 chr3L:21598508-21598628 2.14e-02 55_[+1(4.73e-05)]_57 chr3L:3542673-3542793 1.76e-04 120 chr3L:10680971-10681091 1.73e-02 50_[+1(6.16e-05)]_62 chr3L:21025684-21025804 6.00e-06 66_[+5(4.02e-05)]_9_[+5(1.34e-05)]_\ 29 chr3L:19896459-19896579 2.60e-06 7_[+1(4.73e-05)]_76_[+1(3.02e-05)]_\ 21 chr3R:18063331-18063451 3.90e-03 52_[+1(1.59e-05)]_[+1(6.16e-05)]_52 chr2R:25285539-25285659 3.63e-03 46_[+3(9.14e-05)]_66 chr3L:21023439-21023559 2.96e-04 7_[+3(5.82e-05)]_105 chrX:1943390-1943510 3.15e-09 5_[+2(1.46e-05)]_2_[+4(6.08e-05)]_\ 70_[+1(1.59e-05)]_19 chr3L:9694547-9694667 6.96e-08 8_[+5(4.02e-05)]_22_[+1(3.02e-05)]_\ 6_[+1(9.18e-05)]_60 chr2R:6631479-6631599 3.04e-05 106_[+2(4.13e-05)]_6 chr3R:20949253-20949373 4.02e-03 81_[+3(5.82e-05)]_10_[+1(1.59e-05)]_\ [+1(1.59e-05)]_5 chr3R:6780177-6780297 6.84e-01 120 chr2L:12655868-12655988 1.07e-04 26_[+2(2.79e-05)]_60_[+2(2.79e-05)]_\ 18 chrX:8518241-8518361 2.88e-03 52_[+1(1.59e-05)]_60 chrX:16559523-16559643 1.18e-02 17_[+3(5.82e-05)]_6_[+3(5.82e-05)]_\ 6_[+1(3.02e-05)]_67 chr2L:12436254-12436374 6.35e-01 120 chr2R:20916558-20916678 3.51e-03 89_[+1(6.16e-05)]_23 chr2R:15349548-15349668 6.30e-04 4_[+1(1.59e-05)]_4_[+1(1.59e-05)]_\ [+1(1.59e-05)]_88 chr3L:1885485-1885605 8.32e-04 59_[+1(1.59e-05)]_[+1(1.59e-05)]_45 chr3R:28861363-28861483 2.34e-03 94_[+1(1.59e-05)]_[+1(1.59e-05)]_\ [+1(1.59e-05)]_2 chr3R:30563613-30563733 1.08e-02 20_[+1(4.73e-05)]_20_[+1(3.02e-05)]_\ 3_[+1(3.02e-05)]_53 chr3L:7808928-7809048 2.25e-04 45_[+2(2.79e-05)]_67 chr2L:15478336-15478456 1.09e-02 120 chr2R:12985768-12985888 1.08e-04 6_[+2(1.46e-05)]_106 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************