******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/woc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:29284438-29284558 1.0000 120 chr3R:8957868-8957988 1.0000 120 chr2R:21733843-21733963 1.0000 120 chr2L:12113052-12113172 1.0000 120 chr3R:11859708-11859828 1.0000 120 chr3L:6249594-6249714 1.0000 120 chr3L:22151567-22151687 1.0000 120 chrX:21351240-21351360 1.0000 120 chrX:1135112-1135232 1.0000 120 chr3L:3109625-3109745 1.0000 120 chrX:12901154-12901274 1.0000 120 chr3L:8013457-8013577 1.0000 120 chr3L:11381791-11381911 1.0000 120 chr3R:27685714-27685834 1.0000 120 chr3L:6249794-6249914 1.0000 120 chrX:6779815-6779935 1.0000 120 chr3R:14011822-14011942 1.0000 120 chr3L:6302676-6302796 1.0000 120 chr3L:10968023-10968143 1.0000 120 chr3L:552670-552790 1.0000 120 chr2R:10580610-10580730 1.0000 120 chrX:1411400-1411520 1.0000 120 chr3L:20688344-20688464 1.0000 120 chrX:16765037-16765157 1.0000 120 chrX:15552499-15552619 1.0000 120 chr2L:19071861-19071981 1.0000 120 chrX:3473807-3473927 1.0000 120 chr2R:6547843-6547963 1.0000 120 chr3R:27220988-27221108 1.0000 120 chr3R:27218954-27219074 1.0000 120 chr2L:21881619-21881739 1.0000 120 chr2R:24338894-24339014 1.0000 120 chr2R:15800141-15800261 1.0000 120 chr3R:29075827-29075947 1.0000 120 chr3R:4479348-4479468 1.0000 120 chr2R:19934913-19935033 1.0000 120 chr3R:31422108-31422228 1.0000 120 chr2R:9189684-9189804 1.0000 120 chrX:10318922-10319042 1.0000 120 chr3L:10935304-10935424 1.0000 120 chr3L:22151767-22151887 1.0000 120 chrX:2788696-2788816 1.0000 120 chrX:17297070-17297190 1.0000 120 chr2L:1486419-1486539 1.0000 120 chr2L:19439258-19439378 1.0000 120 chr2L:12598212-12598332 1.0000 120 chrX:15552701-15552821 1.0000 120 chr2R:6548047-6548167 1.0000 120 chr3L:18233237-18233357 1.0000 120 chr3R:25047612-25047732 1.0000 120 chrX:13411668-13411788 1.0000 120 chr3L:833998-834118 1.0000 120 chrX:16427898-16428018 1.0000 120 chrX:5745506-5745626 1.0000 120 chr3L:7994009-7994129 1.0000 120 chrX:21351441-21351561 1.0000 120 chrX:6775707-6775827 1.0000 120 chr2L:4465022-4465142 1.0000 120 chr3R:8958074-8958194 1.0000 120 chr3L:22179192-22179312 1.0000 120 chrX:17507347-17507467 1.0000 120 chr3L:16484829-16484949 1.0000 120 chr3R:23929280-23929400 1.0000 120 chrM:1498-1618 1.0000 120 chrX:446172-446292 1.0000 120 chrX:13240670-13240790 1.0000 120 chr3R:13955367-13955487 1.0000 120 chr3L:1265132-1265252 1.0000 120 chr2R:20149991-20150111 1.0000 120 chrX:3041881-3042001 1.0000 120 chr3L:1457311-1457431 1.0000 120 chr3L:16178495-16178615 1.0000 120 chrX:18483955-18484075 1.0000 120 chr2L:11175753-11175873 1.0000 120 chr2L:1405557-1405677 1.0000 120 chr3L:4120894-4121014 1.0000 120 chrX:7891893-7892013 1.0000 120 chr3L:22072058-22072178 1.0000 120 chr2L:7063841-7063961 1.0000 120 chr3R:27222113-27222233 1.0000 120 chrX:12239672-12239792 1.0000 120 chr3R:14716685-14716805 1.0000 120 chr3L:15192329-15192449 1.0000 120 chr3R:15293701-15293821 1.0000 120 chr3L:10952185-10952305 1.0000 120 chr3L:1031866-1031986 1.0000 120 chrX:9082656-9082776 1.0000 120 chrM:12901-13021 1.0000 120 chr2L:11021748-11021868 1.0000 120 chr3R:29283281-29283401 1.0000 120 chr3R:15806433-15806553 1.0000 120 chrX:2788899-2789019 1.0000 120 chr2R:7587921-7588041 1.0000 120 chr3R:20001632-20001752 1.0000 120 chr3R:28536927-28537047 1.0000 120 chrX:766876-766996 1.0000 120 chr2R:22933642-22933762 1.0000 120 chr3L:604255-604375 1.0000 120 chrX:6276701-6276821 1.0000 120 chr2R:16615851-16615971 1.0000 120 chrX:10319136-10319256 1.0000 120 chr3R:25091097-25091217 1.0000 120 chr3R:15094519-15094639 1.0000 120 chr3L:21688866-21688986 1.0000 120 chr2R:10599231-10599351 1.0000 120 chr2L:623614-623734 1.0000 120 chr3R:10081625-10081745 1.0000 120 chr3R:29283480-29283600 1.0000 120 chr3L:21252696-21252816 1.0000 120 chrX:7969452-7969572 1.0000 120 chrX:18516096-18516216 1.0000 120 chr3R:27221190-27221310 1.0000 120 chrM:6050-6170 1.0000 120 chr3L:8481112-8481232 1.0000 120 chr3R:20001886-20002006 1.0000 120 chr3R:23425269-23425389 1.0000 120 chrX:15070297-15070417 1.0000 120 chr2L:15388240-15388360 1.0000 120 chr3R:6812495-6812615 1.0000 120 chr3R:30263042-30263162 1.0000 120 chrX:9651197-9651317 1.0000 120 chr3L:14453393-14453513 1.0000 120 chr2R:7282272-7282392 1.0000 120 chrX:18263491-18263611 1.0000 120 chr3L:4121100-4121220 1.0000 120 chr3R:14918020-14918140 1.0000 120 chr3L:18239690-18239810 1.0000 120 chrX:1320520-1320640 1.0000 120 chr2R:8242221-8242341 1.0000 120 chr3R:26966796-26966916 1.0000 120 chrX:5891823-5891943 1.0000 120 chr3R:23148629-23148749 1.0000 120 chr3R:24272414-24272534 1.0000 120 chr3R:5045202-5045322 1.0000 120 chrX:779462-779582 1.0000 120 chr2R:11539375-11539495 1.0000 120 chr3L:22466393-22466513 1.0000 120 chr2L:121016-121136 1.0000 120 chrX:3437684-3437804 1.0000 120 chr2L:559494-559614 1.0000 120 chrX:11715080-11715200 1.0000 120 chr3L:17427125-17427245 1.0000 120 chr3L:11293469-11293589 1.0000 120 chr2R:24339096-24339216 1.0000 120 chrX:11348988-11349108 1.0000 120 chr2L:4808453-4808573 1.0000 120 chr3L:13488447-13488567 1.0000 120 chr2L:94655-94775 1.0000 120 chr3L:1090464-1090584 1.0000 120 chr3R:9049332-9049452 1.0000 120 chr3R:24038103-24038223 1.0000 120 chr3L:739325-739445 1.0000 120 chrX:4435362-4435482 1.0000 120 chr2R:13151974-13152094 1.0000 120 chr3L:3253830-3253950 1.0000 120 chr3L:22351647-22351767 1.0000 120 chr3R:9349511-9349631 1.0000 120 chr2R:24955792-24955912 1.0000 120 chr2R:6241595-6241715 1.0000 120 chrX:17578364-17578484 1.0000 120 chr2R:8195401-8195521 1.0000 120 chr3R:29778366-29778486 1.0000 120 chr3L:3612661-3612781 1.0000 120 chr3L:1090699-1090819 1.0000 120 chr3R:4479556-4479676 1.0000 120 chr3L:6809562-6809682 1.0000 120 chr2R:7589770-7589890 1.0000 120 chr2R:24237397-24237517 1.0000 120 chr3L:8460477-8460597 1.0000 120 chr3R:5331908-5332028 1.0000 120 chr2L:12113254-12113374 1.0000 120 chr3L:16189842-16189962 1.0000 120 chr3R:21214913-21215033 1.0000 120 chr2L:9438449-9438569 1.0000 120 chr3L:13263964-13264084 1.0000 120 chr2L:12436316-12436436 1.0000 120 chr2L:10364355-10364475 1.0000 120 chr3L:8013657-8013777 1.0000 120 chrX:19897900-19898020 1.0000 120 chr3L:833680-833800 1.0000 120 chr3L:17849633-17849753 1.0000 120 chrX:8895559-8895679 1.0000 120 chrX:13394480-13394600 1.0000 120 chrX:18479787-18479907 1.0000 120 chr3L:16177470-16177590 1.0000 120 chr3L:18137398-18137518 1.0000 120 chr3R:7967455-7967575 1.0000 120 chr2L:4567344-4567464 1.0000 120 chr2R:13224917-13225037 1.0000 120 chr3R:30795052-30795172 1.0000 120 chr3L:19696428-19696548 1.0000 120 chr2L:15407540-15407660 1.0000 120 chr4:610551-610671 1.0000 120 chr3L:16865176-16865296 1.0000 120 chr2R:12038909-12039029 1.0000 120 chrM:214-334 1.0000 120 chr2R:21719954-21720074 1.0000 120 chr3R:6210653-6210773 1.0000 120 chrX:6545912-6546032 1.0000 120 chr3L:16494787-16494907 1.0000 120 chrX:10899408-10899528 1.0000 120 chr2L:6948807-6948927 1.0000 120 chr3R:30171482-30171602 1.0000 120 chr3L:3037070-3037190 1.0000 120 chr2L:650996-651116 1.0000 120 chrX:2455554-2455674 1.0000 120 chrX:11684670-11684790 1.0000 120 chrX:11888304-11888424 1.0000 120 chr2L:18678423-18678543 1.0000 120 chrX:5745198-5745318 1.0000 120 chrM:11352-11472 1.0000 120 chr2R:6994788-6994908 1.0000 120 chrX:5689771-5689891 1.0000 120 chrX:5332388-5332508 1.0000 120 chr2R:23894892-23895012 1.0000 120 chr3R:5281278-5281398 1.0000 120 chrX:758901-759021 1.0000 120 chrX:3390010-3390130 1.0000 120 chr3R:14716896-14717016 1.0000 120 chrX:9082856-9082976 1.0000 120 chrM:2144-2264 1.0000 120 chrX:8667815-8667935 1.0000 120 chr2R:18658213-18658333 1.0000 120 chrX:7179463-7179583 1.0000 120 chr3R:21827491-21827611 1.0000 120 chrX:1773621-1773741 1.0000 120 chr2L:10278795-10278915 1.0000 120 chr4:695251-695371 1.0000 120 chr2R:19913796-19913916 1.0000 120 chr3R:27186252-27186372 1.0000 120 chr3L:18038354-18038474 1.0000 120 chr2L:2749578-2749698 1.0000 120 chr3R:8029821-8029941 1.0000 120 chrX:2603990-2604110 1.0000 120 chr3L:5867112-5867232 1.0000 120 chrX:13541338-13541458 1.0000 120 chrX:3060234-3060354 1.0000 120 chr3L:7994208-7994328 1.0000 120 chr2L:10239202-10239322 1.0000 120 chr3L:739532-739652 1.0000 120 chrX:6021509-6021629 1.0000 120 chr3L:18241177-18241297 1.0000 120 chr2L:4286381-4286501 1.0000 120 chrM:13219-13339 1.0000 120 chr3L:21738849-21738969 1.0000 120 chr4:904816-904936 1.0000 120 chr2R:18627774-18627894 1.0000 120 chrM:12132-12252 1.0000 120 chr2L:2364352-2364472 1.0000 120 chrM:7591-7711 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_woc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/woc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.309 C 0.193 G 0.189 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.309 C 0.193 G 0.189 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCGGGG MEME-1 width = 8 sites = 2 llr = 26 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:::: probability G :aa:aaaa matrix T a::::::: bits 2.4 ******* 2.2 ******* 1.9 ******* 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7179463-7179583 105 2.72e-06 ATAAATTGCG TGGCGGGG TCGCCAAA chr3R:6812495-6812615 21 2.72e-06 CGCCGTCTTT TGGCGGGG TGTGGTGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7179463-7179583 2.7e-06 104_[+1]_8 chr3R:6812495-6812615 2.7e-06 20_[+1]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGGGG width=8 seqs=2 chrX:7179463-7179583 ( 105) TGGCGGGG 1 chr3R:6812495-6812615 ( 21) TGGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.5e+004 -765 -765 -765 169 -765 -765 240 -765 -765 -765 240 -765 -765 237 -765 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -765 -765 240 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGGGG MEME-1 regular expression -------------------------------------------------------------------------------- TGGCGGGG -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCTGGG MEME-2 width = 8 sites = 3 llr = 38 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a:::: probability G :aa::aaa matrix T ::::a::: bits 2.4 **** *** 2.2 **** *** 1.9 **** *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCTGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6545912-6546032 72 2.78e-06 CCCCACTGTG CGGCTGGG CGGTCGCGTC chrX:4435362-4435482 12 2.78e-06 GGATCAACGA CGGCTGGG TTCAAATATA chr3R:29283281-29283401 32 2.78e-06 ACCCTTCATT CGGCTGGG AGCCCAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6545912-6546032 2.8e-06 71_[+2]_41 chrX:4435362-4435482 2.8e-06 11_[+2]_101 chr3R:29283281-29283401 2.8e-06 31_[+2]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCTGGG width=8 seqs=3 chrX:6545912-6546032 ( 72) CGGCTGGG 1 chrX:4435362-4435482 ( 12) CGGCTGGG 1 chr3R:29283281-29283401 ( 32) CGGCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.2e+004 -823 237 -823 -823 -823 -823 240 -823 -823 -823 240 -823 -823 237 -823 -823 -823 -823 -823 169 -823 -823 240 -823 -823 -823 240 -823 -823 -823 240 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTGGG MEME-2 regular expression -------------------------------------------------------------------------------- CGGCTGGG -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACAGTG MEME-3 width = 8 sites = 8 llr = 88 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::8:a::: pos.-specific C :a:a:1:: probability G a:3::9:a matrix T ::::::a: bits 2.4 ** * * 2.2 ** * * 1.9 ** * * * 1.7 ** ***** Relative 1.4 ** ***** Entropy 1.2 ** ***** (15.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACAGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:739532-739652 109 7.42e-06 ACTTGCGCTC GCACAGTG GGCC chr2R:18658213-18658333 82 7.42e-06 GCTGTTTGAC GCACAGTG GCTTGAAAGT chrX:18263491-18263611 4 7.42e-06 AAG GCACAGTG GGGCAAGTAG chrX:18516096-18516216 83 7.42e-06 TTAGTGTTGT GCACAGTG ATGCCAAACT chrX:16765037-16765157 26 7.42e-06 TATCCCCCAG GCACAGTG GGACCAAAGT chrX:11684670-11684790 48 1.20e-05 GAATTGGGTG GCGCAGTG ACAAAGCGCC chrX:11715080-11715200 51 1.20e-05 ctgcGTTTAT GCGCAGTG CGTCATTACA chr2R:19934913-19935033 28 1.95e-05 CGGGGCCATT GCACACTG CTTTCGATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:739532-739652 7.4e-06 108_[+3]_4 chr2R:18658213-18658333 7.4e-06 81_[+3]_31 chrX:18263491-18263611 7.4e-06 3_[+3]_109 chrX:18516096-18516216 7.4e-06 82_[+3]_30 chrX:16765037-16765157 7.4e-06 25_[+3]_87 chrX:11684670-11684790 1.2e-05 47_[+3]_65 chrX:11715080-11715200 1.2e-05 50_[+3]_62 chr2R:19934913-19935033 2e-05 27_[+3]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACAGTG width=8 seqs=8 chr3L:739532-739652 ( 109) GCACAGTG 1 chr2R:18658213-18658333 ( 82) GCACAGTG 1 chrX:18263491-18263611 ( 4) GCACAGTG 1 chrX:18516096-18516216 ( 83) GCACAGTG 1 chrX:16765037-16765157 ( 26) GCACAGTG 1 chrX:11684670-11684790 ( 48) GCGCAGTG 1 chrX:11715080-11715200 ( 51) GCGCAGTG 1 chr2R:19934913-19935033 ( 28) GCACACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.6e+004 -965 -965 240 -965 -965 237 -965 -965 128 -965 41 -965 -965 237 -965 -965 169 -965 -965 -965 -965 -63 221 -965 -965 -965 -965 169 -965 -965 240 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-3 regular expression -------------------------------------------------------------------------------- GC[AG]CAGTG -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGCAG MEME-4 width = 8 sites = 5 llr = 59 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::::a:: probability G a:a:a::a matrix T :a:a:::: bits 2.4 * * ** * 2.2 * * ** * 1.9 * * ** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7589770-7589890 101 7.27e-06 ACGGCACAAC GTGTGCAG CTCACCAGAG chr3L:22466393-22466513 49 7.27e-06 TGAAATATGA GTGTGCAG ACTGGCGTTT chr3L:16178495-16178615 74 7.27e-06 TAGTATGTGT GTGTGCAG CAGCAGACGC chr3R:23929280-23929400 110 7.27e-06 AATTATCATC GTGTGCAG GAA chr3L:3109625-3109745 103 7.27e-06 TCAAACTATT GTGTGCAG AGCATCCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7589770-7589890 7.3e-06 100_[+4]_12 chr3L:22466393-22466513 7.3e-06 48_[+4]_64 chr3L:16178495-16178615 7.3e-06 73_[+4]_39 chr3R:23929280-23929400 7.3e-06 109_[+4]_3 chr3L:3109625-3109745 7.3e-06 102_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGCAG width=8 seqs=5 chr2R:7589770-7589890 ( 101) GTGTGCAG 1 chr3L:22466393-22466513 ( 49) GTGTGCAG 1 chr3L:16178495-16178615 ( 74) GTGTGCAG 1 chr3R:23929280-23929400 ( 110) GTGTGCAG 1 chr3L:3109625-3109745 ( 103) GTGTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 2.4e+004 -897 -897 240 -897 -897 -897 -897 169 -897 -897 240 -897 -897 -897 -897 169 -897 -897 240 -897 -897 237 -897 -897 169 -897 -897 -897 -897 -897 240 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCAG MEME-4 regular expression -------------------------------------------------------------------------------- GTGTGCAG -------------------------------------------------------------------------------- Time 26.37 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGYATT MEME-5 width = 8 sites = 11 llr = 114 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::a:: pos.-specific C ::::4::: probability G :aaa:::: matrix T ::::6:aa bits 2.4 *** 2.2 *** 1.9 *** 1.7 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (15.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGGTATT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9438449-9438569 89 1.90e-05 TTTAAGTGTA AGGGTATT TAACAACCAT chr2R:24955792-24955912 110 1.90e-05 ATTTCCGGTT AGGGTATT GCC chrX:18263491-18263611 78 1.90e-05 ATTTTGACAC AGGGTATT CAGCGCTTTA chr3R:29283480-29283600 83 1.90e-05 TCAAAGTACG AGGGTATT GGGGCCCAGC chrX:15552701-15552821 29 1.90e-05 ATTCGAATAA AGGGTATT CCACAATTGG chrX:17297070-17297190 98 1.90e-05 ACTCCAAGCA AGGGTATT AAAACGAAAG chrX:1411400-1411520 97 1.90e-05 AGACAGGGAA AGGGTATT TGATTCGGGC chr3R:14918020-14918140 65 3.09e-05 TGACTGCAAA AGGGCATT AGGGGGTTTA chr3R:23425269-23425389 113 3.09e-05 GCCTTCAGGG AGGGCATT chr3L:21252696-21252816 48 3.09e-05 GGGGCGGATC AGGGCATT CACGGGGTGC chrX:12239672-12239792 109 3.09e-05 CTCAGTGGGT AGGGCATT ATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9438449-9438569 1.9e-05 88_[+5]_24 chr2R:24955792-24955912 1.9e-05 109_[+5]_3 chrX:18263491-18263611 1.9e-05 77_[+5]_35 chr3R:29283480-29283600 1.9e-05 82_[+5]_30 chrX:15552701-15552821 1.9e-05 28_[+5]_84 chrX:17297070-17297190 1.9e-05 97_[+5]_15 chrX:1411400-1411520 1.9e-05 96_[+5]_16 chr3R:14918020-14918140 3.1e-05 64_[+5]_48 chr3R:23425269-23425389 3.1e-05 112_[+5] chr3L:21252696-21252816 3.1e-05 47_[+5]_65 chrX:12239672-12239792 3.1e-05 108_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGYATT width=8 seqs=11 chr2L:9438449-9438569 ( 89) AGGGTATT 1 chr2R:24955792-24955912 ( 110) AGGGTATT 1 chrX:18263491-18263611 ( 78) AGGGTATT 1 chr3R:29283480-29283600 ( 83) AGGGTATT 1 chrX:15552701-15552821 ( 29) AGGGTATT 1 chrX:17297070-17297190 ( 98) AGGGTATT 1 chrX:1411400-1411520 ( 97) AGGGTATT 1 chr3R:14918020-14918140 ( 65) AGGGCATT 1 chr3R:23425269-23425389 ( 113) AGGGCATT 1 chr3L:21252696-21252816 ( 48) AGGGCATT 1 chrX:12239672-12239792 ( 109) AGGGCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.98753 E= 2.9e+004 169 -1010 -1010 -1010 -1010 -1010 240 -1010 -1010 -1010 240 -1010 -1010 -1010 240 -1010 -1010 91 -1010 104 169 -1010 -1010 -1010 -1010 -1010 -1010 169 -1010 -1010 -1010 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.9e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.000000 0.636364 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGYATT MEME-5 regular expression -------------------------------------------------------------------------------- AGGG[TC]ATT -------------------------------------------------------------------------------- Time 32.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29284438-29284558 6.62e-01 120 chr3R:8957868-8957988 4.04e-01 120 chr2R:21733843-21733963 1.00e+00 120 chr2L:12113052-12113172 9.07e-01 120 chr3R:11859708-11859828 8.92e-01 120 chr3L:6249594-6249714 2.70e-01 29_[+1(9.01e-05)]_83 chr3L:22151567-22151687 9.75e-01 120 chrX:21351240-21351360 4.11e-01 120 chrX:1135112-1135232 4.37e-01 120 chr3L:3109625-3109745 4.36e-02 102_[+4(7.27e-06)]_10 chrX:12901154-12901274 6.08e-01 120 chr3L:8013457-8013577 5.64e-02 120 chr3L:11381791-11381911 9.80e-01 120 chr3R:27685714-27685834 9.66e-02 120 chr3L:6249794-6249914 9.96e-01 120 chrX:6779815-6779935 9.40e-01 120 chr3R:14011822-14011942 7.30e-01 120 chr3L:6302676-6302796 6.99e-01 120 chr3L:10968023-10968143 4.70e-01 120 chr3L:552670-552790 9.78e-01 120 chr2R:10580610-10580730 9.88e-01 120 chrX:1411400-1411520 6.08e-03 96_[+5(1.90e-05)]_16 chr3L:20688344-20688464 9.90e-01 120 chrX:16765037-16765157 1.22e-01 25_[+3(7.42e-06)]_87 chrX:15552499-15552619 9.98e-01 120 chr2L:19071861-19071981 7.00e-01 120 chrX:3473807-3473927 9.09e-01 120 chr2R:6547843-6547963 4.89e-02 28_[+2(9.17e-05)]_84 chr3R:27220988-27221108 1.36e-01 10_[+1(9.01e-05)]_102 chr3R:27218954-27219074 9.64e-01 120 chr2L:21881619-21881739 9.65e-01 120 chr2R:24338894-24339014 3.32e-01 120 chr2R:15800141-15800261 5.29e-01 120 chr3R:29075827-29075947 9.31e-01 120 chr3R:4479348-4479468 4.56e-01 120 chr2R:19934913-19935033 2.96e-03 14_[+1(9.01e-05)]_5_[+3(1.95e-05)]_\ 85 chr3R:31422108-31422228 3.28e-02 63_[+1(9.01e-05)]_49 chr2R:9189684-9189804 2.00e-01 120 chrX:10318922-10319042 4.21e-01 120 chr3L:10935304-10935424 4.38e-01 103_[+5(6.15e-05)]_9 chr3L:22151767-22151887 1.67e-01 120 chrX:2788696-2788816 5.05e-01 120 chrX:17297070-17297190 2.10e-01 97_[+5(1.90e-05)]_15 chr2L:1486419-1486539 9.85e-01 120 chr2L:19439258-19439378 2.19e-01 120 chr2L:12598212-12598332 1.00e+00 120 chrX:15552701-15552821 1.28e-02 28_[+5(1.90e-05)]_84 chr2R:6548047-6548167 9.66e-01 120 chr3L:18233237-18233357 8.10e-02 10_[+5(6.15e-05)]_102 chr3R:25047612-25047732 7.72e-01 120 chrX:13411668-13411788 4.38e-01 120 chr3L:833998-834118 9.00e-01 120 chrX:16427898-16428018 1.44e-01 120 chrX:5745506-5745626 4.34e-01 120 chr3L:7994009-7994129 2.67e-01 47_[+5(6.15e-05)]_65 chrX:21351441-21351561 5.46e-01 120 chrX:6775707-6775827 9.94e-01 120 chr2L:4465022-4465142 9.77e-01 120 chr3R:8958074-8958194 2.04e-02 74_[+1(9.01e-05)]_38 chr3L:22179192-22179312 8.16e-01 120 chrX:17507347-17507467 8.83e-01 120 chr3L:16484829-16484949 8.04e-01 120 chr3R:23929280-23929400 2.08e-02 109_[+4(7.27e-06)]_3 chrM:1498-1618 9.18e-01 120 chrX:446172-446292 5.21e-01 120 chrX:13240670-13240790 5.08e-02 72_[+1(9.01e-05)]_40 chr3R:13955367-13955487 9.88e-01 120 chr3L:1265132-1265252 3.61e-01 120 chr2R:20149991-20150111 7.55e-01 120 chrX:3041881-3042001 8.39e-01 120 chr3L:1457311-1457431 4.51e-02 120 chr3L:16178495-16178615 7.10e-02 73_[+4(7.27e-06)]_39 chrX:18483955-18484075 1.75e-01 120 chr2L:11175753-11175873 3.43e-01 120 chr2L:1405557-1405677 1.07e-01 7_[+5(6.15e-05)]_105 chr3L:4120894-4121014 9.44e-01 120 chrX:7891893-7892013 7.45e-01 120 chr3L:22072058-22072178 6.71e-01 120 chr2L:7063841-7063961 1.91e-01 120 chr3R:27222113-27222233 9.98e-01 120 chrX:12239672-12239792 7.30e-03 108_[+5(3.09e-05)]_4 chr3R:14716685-14716805 7.89e-01 120 chr3L:15192329-15192449 7.73e-01 120 chr3R:15293701-15293821 7.16e-01 120 chr3L:10952185-10952305 4.49e-01 120 chr3L:1031866-1031986 4.17e-01 120 chrX:9082656-9082776 8.49e-01 120 chrM:12901-13021 1.00e+00 120 chr2L:11021748-11021868 1.22e-01 15_[+3(2.42e-05)]_97 chr3R:29283281-29283401 3.03e-03 31_[+2(2.78e-06)]_81 chr3R:15806433-15806553 8.65e-01 120 chrX:2788899-2789019 9.92e-01 120 chr2R:7587921-7588041 1.17e-01 120 chr3R:20001632-20001752 2.63e-01 120 chr3R:28536927-28537047 1.82e-01 120 chrX:766876-766996 8.40e-01 120 chr2R:22933642-22933762 3.24e-01 120 chr3L:604255-604375 9.99e-01 120 chrX:6276701-6276821 4.01e-01 120 chr2R:16615851-16615971 1.89e-01 120 chrX:10319136-10319256 7.26e-01 120 chr3R:25091097-25091217 2.79e-01 120 chr3R:15094519-15094639 1.01e-01 120 chr3L:21688866-21688986 9.80e-01 120 chr2R:10599231-10599351 6.27e-01 120 chr2L:623614-623734 9.90e-01 120 chr3R:10081625-10081745 1.92e-01 120 chr3R:29283480-29283600 1.07e-01 82_[+5(1.90e-05)]_30 chr3L:21252696-21252816 4.18e-05 47_[+5(3.09e-05)]_4_[+4(5.60e-05)]_\ 53 chrX:7969452-7969572 9.69e-01 120 chrX:18516096-18516216 4.02e-02 82_[+3(7.42e-06)]_30 chr3R:27221190-27221310 9.99e-01 120 chrM:6050-6170 9.58e-01 120 chr3L:8481112-8481232 7.88e-01 120 chr3R:20001886-20002006 1.00e+00 120 chr3R:23425269-23425389 3.68e-02 112_[+5(3.09e-05)] chrX:15070297-15070417 9.21e-01 120 chr2L:15388240-15388360 8.54e-01 120 chr3R:6812495-6812615 3.04e-04 20_[+1(2.72e-06)]_92 chr3R:30263042-30263162 7.75e-01 120 chrX:9651197-9651317 9.74e-01 120 chr3L:14453393-14453513 2.76e-01 120 chr2R:7282272-7282392 9.73e-01 120 chrX:18263491-18263611 2.29e-04 3_[+3(7.42e-06)]_66_[+5(1.90e-05)]_\ 35 chr3L:4121100-4121220 3.78e-01 120 chr3R:14918020-14918140 2.18e-01 64_[+5(3.09e-05)]_48 chr3L:18239690-18239810 9.23e-01 120 chrX:1320520-1320640 7.73e-01 120 chr2R:8242221-8242341 9.47e-01 120 chr3R:26966796-26966916 3.91e-01 120 chrX:5891823-5891943 9.24e-01 120 chr3R:23148629-23148749 9.77e-01 120 chr3R:24272414-24272534 5.37e-01 120 chr3R:5045202-5045322 7.83e-01 120 chrX:779462-779582 3.71e-01 120 chr2R:11539375-11539495 3.80e-01 120 chr3L:22466393-22466513 1.61e-02 48_[+4(7.27e-06)]_64 chr2L:121016-121136 8.11e-01 120 chrX:3437684-3437804 9.83e-01 120 chr2L:559494-559614 9.36e-01 120 chrX:11715080-11715200 9.69e-03 50_[+3(1.20e-05)]_62 chr3L:17427125-17427245 9.39e-01 120 chr3L:11293469-11293589 2.10e-02 120 chr2R:24339096-24339216 3.13e-01 120 chrX:11348988-11349108 2.02e-01 120 chr2L:4808453-4808573 8.47e-01 120 chr3L:13488447-13488567 6.06e-01 120 chr2L:94655-94775 7.44e-01 120 chr3L:1090464-1090584 1.00e-01 120 chr3R:9049332-9049452 3.03e-01 120 chr3R:24038103-24038223 9.89e-01 120 chr3L:739325-739445 9.97e-01 120 chrX:4435362-4435482 7.51e-03 11_[+2(2.78e-06)]_101 chr2R:13151974-13152094 9.97e-01 120 chr3L:3253830-3253950 2.88e-01 120 chr3L:22351647-22351767 1.02e-01 120 chr3R:9349511-9349631 8.62e-01 120 chr2R:24955792-24955912 4.50e-02 109_[+5(1.90e-05)]_3 chr2R:6241595-6241715 6.56e-02 120 chrX:17578364-17578484 4.20e-01 120 chr2R:8195401-8195521 5.95e-01 120 chr3R:29778366-29778486 8.91e-01 120 chr3L:3612661-3612781 1.00e+00 120 chr3L:1090699-1090819 5.12e-01 120 chr3R:4479556-4479676 9.96e-01 120 chr3L:6809562-6809682 6.74e-01 120 chr2R:7589770-7589890 3.51e-02 100_[+4(7.27e-06)]_12 chr2R:24237397-24237517 9.45e-01 120 chr3L:8460477-8460597 1.50e-01 120 chr3R:5331908-5332028 9.58e-01 120 chr2L:12113254-12113374 3.25e-01 120 chr3L:16189842-16189962 4.92e-01 120 chr3R:21214913-21215033 8.98e-01 120 chr2L:9438449-9438569 3.22e-03 88_[+5(1.90e-05)]_24 chr3L:13263964-13264084 9.69e-01 120 chr2L:12436316-12436436 3.53e-01 120 chr2L:10364355-10364475 1.36e-01 120 chr3L:8013657-8013777 7.05e-01 120 chrX:19897900-19898020 9.77e-01 120 chr3L:833680-833800 1.00e+00 120 chr3L:17849633-17849753 9.88e-01 120 chrX:8895559-8895679 7.55e-01 120 chrX:13394480-13394600 9.78e-01 120 chrX:18479787-18479907 7.00e-01 120 chr3L:16177470-16177590 1.26e-01 120 chr3L:18137398-18137518 1.10e-01 120 chr3R:7967455-7967575 7.35e-01 120 chr2L:4567344-4567464 5.88e-01 120 chr2R:13224917-13225037 9.98e-01 120 chr3R:30795052-30795172 1.00e+00 120 chr3L:19696428-19696548 1.55e-01 120 chr2L:15407540-15407660 9.02e-01 120 chr4:610551-610671 9.73e-01 120 chr3L:16865176-16865296 4.96e-01 120 chr2R:12038909-12039029 3.07e-02 20_[+3(6.94e-05)]_92 chrM:214-334 9.54e-01 120 chr2R:21719954-21720074 9.54e-01 120 chr3R:6210653-6210773 9.83e-01 120 chrX:6545912-6546032 5.65e-04 71_[+2(2.78e-06)]_41 chr3L:16494787-16494907 6.41e-01 120 chrX:10899408-10899528 1.83e-01 120 chr2L:6948807-6948927 3.67e-01 120 chr3R:30171482-30171602 7.49e-01 120 chr3L:3037070-3037190 5.05e-01 120 chr2L:650996-651116 6.29e-01 120 chrX:2455554-2455674 2.36e-01 120 chrX:11684670-11684790 2.45e-04 47_[+3(1.20e-05)]_65 chrX:11888304-11888424 9.83e-01 120 chr2L:18678423-18678543 9.96e-01 120 chrX:5745198-5745318 9.39e-01 120 chrM:11352-11472 9.69e-01 120 chr2R:6994788-6994908 3.43e-02 120 chrX:5689771-5689891 5.09e-01 120 chrX:5332388-5332508 4.20e-01 120 chr2R:23894892-23895012 1.00e+00 120 chr3R:5281278-5281398 3.10e-02 120 chrX:758901-759021 6.79e-01 120 chrX:3390010-3390130 5.86e-01 120 chr3R:14716896-14717016 7.09e-02 120 chrX:9082856-9082976 9.91e-01 120 chrM:2144-2264 1.00e+00 120 chrX:8667815-8667935 3.55e-02 22_[+2(9.17e-05)]_90 chr2R:18658213-18658333 9.12e-03 81_[+3(7.42e-06)]_31 chrX:7179463-7179583 7.10e-04 104_[+1(2.72e-06)]_8 chr3R:21827491-21827611 4.70e-01 120 chrX:1773621-1773741 3.12e-01 120 chr2L:10278795-10278915 9.51e-01 120 chr4:695251-695371 1.86e-01 120 chr2R:19913796-19913916 2.11e-02 27_[+1(9.01e-05)]_85 chr3R:27186252-27186372 1.23e-01 120 chr3L:18038354-18038474 3.92e-01 120 chr2L:2749578-2749698 2.16e-02 68_[+1(9.01e-05)]_44 chr3R:8029821-8029941 7.36e-01 120 chrX:2603990-2604110 5.33e-01 120 chr3L:5867112-5867232 5.30e-01 120 chrX:13541338-13541458 3.29e-01 45_[+3(9.37e-05)]_67 chrX:3060234-3060354 1.69e-01 120 chr3L:7994208-7994328 1.96e-01 120 chr2L:10239202-10239322 6.13e-01 120 chr3L:739532-739652 2.40e-02 108_[+3(7.42e-06)]_4 chrX:6021509-6021629 1.25e-02 120 chr3L:18241177-18241297 9.20e-01 120 chr2L:4286381-4286501 9.97e-01 120 chrM:13219-13339 4.87e-01 120 chr3L:21738849-21738969 3.12e-01 68_[+4(5.60e-05)]_44 chr4:904816-904936 5.30e-01 120 chr2R:18627774-18627894 7.35e-01 120 chrM:12132-12252 1.00e+00 120 chr2L:2364352-2364472 1.41e-01 120 chrM:7591-7711 1.00e+00 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************