******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/wek.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:5698421-5698541 1.0000 120 chr2R:19670521-19670641 1.0000 120 chr2L:10476985-10477105 1.0000 120 chr2L:810466-810586 1.0000 120 chr3R:27238103-27238223 1.0000 120 chr2L:10266633-10266753 1.0000 120 chr3L:1784276-1784396 1.0000 120 chr2L:10483194-10483314 1.0000 120 chr2L:10344361-10344481 1.0000 120 chrX:10787559-10787679 1.0000 120 chrX:6875022-6875142 1.0000 120 chr2L:1211669-1211789 1.0000 120 chr3L:21830238-21830358 1.0000 120 chr2R:23811996-23812116 1.0000 120 chr3R:16436519-16436639 1.0000 120 chrX:16753216-16753336 1.0000 120 chr3R:13304618-13304738 1.0000 120 chr3L:876221-876341 1.0000 120 chr3R:31617929-31618049 1.0000 120 chr2L:4226950-4227070 1.0000 120 chr3L:13041008-13041128 1.0000 120 chr2R:23949276-23949396 1.0000 120 chr3L:17904624-17904744 1.0000 120 chrX:9187562-9187682 1.0000 120 chr3L:8457652-8457772 1.0000 120 chr2R:22420939-22421059 1.0000 120 chrX:2075888-2076008 1.0000 120 chr2L:6658429-6658549 1.0000 120 chr3R:23924307-23924427 1.0000 120 chr4:1181580-1181700 1.0000 120 chr2R:13082119-13082239 1.0000 120 chrX:11090252-11090372 1.0000 120 chr3R:6726265-6726385 1.0000 120 chr2L:10269982-10270102 1.0000 120 chr2R:22738386-22738506 1.0000 120 chrX:6968707-6968827 1.0000 120 chr3R:23538886-23539006 1.0000 120 chrX:11891899-11892019 1.0000 120 chr2L:22133106-22133226 1.0000 120 chr3R:24148912-24149032 1.0000 120 chr3R:21347317-21347437 1.0000 120 chr3L:10663316-10663436 1.0000 120 chr2L:870403-870523 1.0000 120 chr3L:18865553-18865673 1.0000 120 chr2L:14398081-14398201 1.0000 120 chr3L:16985593-16985713 1.0000 120 chrX:11872750-11872870 1.0000 120 chr3R:5114312-5114432 1.0000 120 chrX:14234619-14234739 1.0000 120 chr2L:8213934-8214054 1.0000 120 chr3L:4059291-4059411 1.0000 120 chrX:1963332-1963452 1.0000 120 chrX:10044008-10044128 1.0000 120 chr2L:4452991-4453111 1.0000 120 chr4:156100-156220 1.0000 120 chr3L:8523462-8523582 1.0000 120 chr3L:21441513-21441633 1.0000 120 chr2R:21624174-21624294 1.0000 120 chr3L:21201382-21201502 1.0000 120 chr3L:4541180-4541300 1.0000 120 chr2R:13912856-13912976 1.0000 120 chrX:9580771-9580891 1.0000 120 chr3R:6206373-6206493 1.0000 120 chr2R:20063350-20063470 1.0000 120 chr3R:17606011-17606131 1.0000 120 chr2L:3576210-3576330 1.0000 120 chr3R:21741115-21741235 1.0000 120 chr2L:94815-94935 1.0000 120 chr3L:11356105-11356225 1.0000 120 chrX:14243115-14243235 1.0000 120 chr3R:4978506-4978626 1.0000 120 chr3R:566831-566951 1.0000 120 chr3R:30193977-30194097 1.0000 120 chr3L:13949590-13949710 1.0000 120 chr2L:19049018-19049138 1.0000 120 chr2R:5664293-5664413 1.0000 120 chr3L:21574438-21574558 1.0000 120 chr2L:7155456-7155576 1.0000 120 chr2L:11004729-11004849 1.0000 120 chr2L:9495378-9495498 1.0000 120 chr3L:18743897-18744017 1.0000 120 chr2L:22121038-22121158 1.0000 120 chr2R:9586604-9586724 1.0000 120 chr3R:9918970-9919090 1.0000 120 chr4:466827-466947 1.0000 120 chr2L:10472359-10472479 1.0000 120 chr2L:13735974-13736094 1.0000 120 chr3R:26978452-26978572 1.0000 120 chr2R:14235410-14235530 1.0000 120 chrX:8128269-8128389 1.0000 120 chr2L:13903932-13904052 1.0000 120 chr2R:24515289-24515409 1.0000 120 chr2L:22131334-22131454 1.0000 120 chr3R:24268385-24268505 1.0000 120 chr2R:18126330-18126450 1.0000 120 chr2L:7166050-7166170 1.0000 120 chrX:9106988-9107108 1.0000 120 chr3L:9397949-9398069 1.0000 120 chr2R:13334939-13335059 1.0000 120 chr2L:10204268-10204388 1.0000 120 chr3L:13432813-13432933 1.0000 120 chr2L:16858687-16858807 1.0000 120 chr2L:8521836-8521956 1.0000 120 chr3R:11761902-11762022 1.0000 120 chr3L:11355545-11355665 1.0000 120 chr2R:12953382-12953502 1.0000 120 chr3L:8954326-8954446 1.0000 120 chr3R:23530157-23530277 1.0000 120 chr2L:16499756-16499876 1.0000 120 chrX:1183377-1183497 1.0000 120 chr3L:11387337-11387457 1.0000 120 chr3R:5588908-5589028 1.0000 120 chr3L:19924811-19924931 1.0000 120 chr3R:5483869-5483989 1.0000 120 chr3R:31241493-31241613 1.0000 120 chr3L:11413119-11413239 1.0000 120 chrX:13820485-13820605 1.0000 120 chr2R:10151200-10151320 1.0000 120 chr3R:23445920-23446040 1.0000 120 chr2R:5663123-5663243 1.0000 120 chr3L:12392910-12393030 1.0000 120 chrX:2076817-2076937 1.0000 120 chr3R:23869006-23869126 1.0000 120 chr3L:16699644-16699764 1.0000 120 chr2R:11706359-11706479 1.0000 120 chr3R:20276875-20276995 1.0000 120 chr2R:16785626-16785746 1.0000 120 chr3L:8449404-8449524 1.0000 120 chrX:23096670-23096790 1.0000 120 chr4:167671-167791 1.0000 120 chr3L:2433481-2433601 1.0000 120 chr3L:9072104-9072224 1.0000 120 chr3R:4445296-4445416 1.0000 120 chr2L:10331391-10331511 1.0000 120 chr2L:3151196-3151316 1.0000 120 chr3R:12585867-12585987 1.0000 120 chr2R:11641905-11642025 1.0000 120 chr3L:12796351-12796471 1.0000 120 chr3L:2254440-2254560 1.0000 120 chrX:10621764-10621884 1.0000 120 chr2L:18335748-18335868 1.0000 120 chr3R:3734754-3734874 1.0000 120 chr3L:15632808-15632928 1.0000 120 chr2L:20016549-20016669 1.0000 120 chr2L:10211314-10211434 1.0000 120 chr3L:8075203-8075323 1.0000 120 chr3R:12250422-12250542 1.0000 120 chrX:2192023-2192143 1.0000 120 chrX:19375617-19375737 1.0000 120 chr2L:21329512-21329632 1.0000 120 chr3R:12712094-12712214 1.0000 120 chr2R:1590456-1590576 1.0000 120 chr3L:8830575-8830695 1.0000 120 chr2R:21611365-21611485 1.0000 120 chr3L:4220820-4220940 1.0000 120 chr3R:19467587-19467707 1.0000 120 chr3L:7000115-7000235 1.0000 120 chrX:16917576-16917696 1.0000 120 chr2R:21874156-21874276 1.0000 120 chr2R:23646004-23646124 1.0000 120 chr2R:14235611-14235731 1.0000 120 chr3R:12717619-12717739 1.0000 120 chr2R:16565453-16565573 1.0000 120 chr3R:13388694-13388814 1.0000 120 chr3L:11454555-11454675 1.0000 120 chr3R:11178498-11178618 1.0000 120 chrX:9644960-9645080 1.0000 120 chr2R:8797617-8797737 1.0000 120 chr3R:22573709-22573829 1.0000 120 chrX:19243536-19243656 1.0000 120 chr4:646559-646679 1.0000 120 chr4:315533-315653 1.0000 120 chr2L:6566136-6566256 1.0000 120 chr3R:29066410-29066530 1.0000 120 chr2L:7215783-7215903 1.0000 120 chr3R:25221511-25221631 1.0000 120 chr3R:19060369-19060489 1.0000 120 chr3R:27254155-27254275 1.0000 120 chr3L:2469764-2469884 1.0000 120 chr2L:10206777-10206897 1.0000 120 chr2R:13168612-13168732 1.0000 120 chr2R:19394567-19394687 1.0000 120 chr2R:23882377-23882497 1.0000 120 chr3L:8514865-8514985 1.0000 120 chr3L:6140344-6140464 1.0000 120 chr3L:20976532-20976652 1.0000 120 chrX:10731301-10731421 1.0000 120 chr3R:16206312-16206432 1.0000 120 chr2L:11845207-11845327 1.0000 120 chr2R:22525160-22525280 1.0000 120 chr2R:7253913-7254033 1.0000 120 chr3R:24753713-24753833 1.0000 120 chr2L:5113575-5113695 1.0000 120 chr2L:12020742-12020862 1.0000 120 chr2L:12457342-12457462 1.0000 120 chr3R:29138455-29138575 1.0000 120 chrX:3832371-3832491 1.0000 120 chr2R:20562309-20562429 1.0000 120 chr2R:21624373-21624493 1.0000 120 chr3R:12701411-12701531 1.0000 120 chr2R:14486959-14487079 1.0000 120 chr2L:9010404-9010524 1.0000 120 chr3L:15597158-15597278 1.0000 120 chrX:16598353-16598473 1.0000 120 chr2R:9266583-9266703 1.0000 120 chr3R:22635197-22635317 1.0000 120 chr2R:10304284-10304404 1.0000 120 chr2L:9437228-9437348 1.0000 120 chr2R:18567314-18567434 1.0000 120 chr3L:483972-484092 1.0000 120 chr3R:26969240-26969360 1.0000 120 chr3R:6765020-6765140 1.0000 120 chr2R:9683206-9683326 1.0000 120 chr2L:14527347-14527467 1.0000 120 chr2L:7827771-7827891 1.0000 120 chr2L:12474539-12474659 1.0000 120 chr3R:5297511-5297631 1.0000 120 chr2L:17388164-17388284 1.0000 120 chr2L:21262951-21263071 1.0000 120 chr3R:5223355-5223475 1.0000 120 chr4:181760-181880 1.0000 120 chr3R:10150710-10150830 1.0000 120 chr2L:7528219-7528339 1.0000 120 chr2L:10615208-10615328 1.0000 120 chr2R:17084256-17084376 1.0000 120 chrX:3359005-3359125 1.0000 120 chrX:5916141-5916261 1.0000 120 chr2R:17714558-17714678 1.0000 120 chr3R:11762552-11762672 1.0000 120 chr3R:19153697-19153817 1.0000 120 chr3L:6612792-6612912 1.0000 120 chr3L:8379311-8379431 1.0000 120 chr3R:8155880-8156000 1.0000 120 chr3R:20551711-20551831 1.0000 120 chr3R:23013584-23013704 1.0000 120 chr2R:13438911-13439031 1.0000 120 chr2R:6244956-6245076 1.0000 120 chr3R:10599038-10599158 1.0000 120 chr3L:15637730-15637850 1.0000 120 chrX:13088620-13088740 1.0000 120 chr3L:9372740-9372860 1.0000 120 chr2L:10146882-10147002 1.0000 120 chr2R:22640145-22640265 1.0000 120 chrX:362274-362394 1.0000 120 chr2R:13623526-13623646 1.0000 120 chr2R:25190587-25190707 1.0000 120 chr3R:9337815-9337935 1.0000 120 chr3L:6969585-6969705 1.0000 120 chr2R:18440385-18440505 1.0000 120 chr2R:18667154-18667274 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_wek/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/wek.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.206 G 0.215 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.206 G 0.215 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGTATTC MEME-1 width = 8 sites = 41 llr = 374 E-value = 1.7e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::2:2:8 probability G aaa2:::: matrix T :::7:8a2 bits 2.3 ** 2.1 ** 1.8 *** * * 1.6 *** * * Relative 1.4 *** * ** Entropy 1.1 *** **** (13.1 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTATTC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19153697-19153817 75 1.41e-05 TTACTGTTGG GGGTATTC GAAACGAAGA chr3R:5223355-5223475 36 1.41e-05 ATGGAGTTAG GGGTATTC CTGCAAGCGT chr2R:9683206-9683326 84 1.41e-05 GATTGGGCGG GGGTATTC CCGTTTTTCC chr3R:13388694-13388814 81 1.41e-05 AATTTAGAAG GGGTATTC GTATTTTATT chrX:23096670-23096790 108 1.41e-05 GTTAGATTCT GGGTATTC CTTAA chr2R:13334939-13335059 103 1.41e-05 GCTGAGAATG GGGTATTC GAAATGTATG chr2L:7155456-7155576 57 1.41e-05 CTTATGAGAG GGGTATTC CGGCTCTTCT chr3R:6726265-6726385 64 1.41e-05 TTGTCATTGT GGGTATTC GTGCCAGTGT chr4:1181580-1181700 55 1.41e-05 TGTTTGGCAT GGGTATTC GATGCCTAAA chr3L:17904624-17904744 21 1.41e-05 ATAAACTTAG GGGTATTC CGGTGACAGG chr3L:21830238-21830358 79 1.41e-05 ATATTATCAG GGGTATTC AGCTAGCTAT chr3L:1784276-1784396 59 1.41e-05 TGTACATGAA GGGTATTC CCACTGATCG chr2R:19670521-19670641 43 1.41e-05 TAAAGATTAG GGGTATTC CCCATGGATA chr2R:5698421-5698541 86 1.41e-05 AAACCGTTGT GGGTATTC AGTCCGTATC chr2R:22640145-22640265 86 2.43e-05 ATTGTATTTG GGGTACTC CAAAACTTAT chr2R:21624174-21624294 14 2.43e-05 CTGTGGGTAG GGGTACTC AATGGGTGCA chr3L:4059291-4059411 64 2.43e-05 AGTTCATTAG GGGTACTC ACTGTCGCAC chr2L:10266633-10266753 36 2.43e-05 GGTGTGTTAG GGGTACTC CTCTGTAAAG chr2L:10615208-10615328 109 4.50e-05 TCGTCGTCGG GGGGATTC CCCC chr3L:2433481-2433601 62 4.50e-05 GAATTTCACT GGGCATTC GTAATTGCTG chr2L:9495378-9495498 17 4.50e-05 CCGAAACTAG GGGCATTC TTCTTACAGC chr3R:21741115-21741235 59 4.50e-05 TTCTCAATGG GGGGATTC TTTATAAAGG chrX:9580771-9580891 42 4.50e-05 TCCTGATTAG GGGGATTC ATACACATGG chrX:2075888-2076008 60 4.50e-05 CTTGCGTTGG GGGCATTC AAACGATATT chr3L:876221-876341 45 4.50e-05 TGCCCATGCG GGGGATTC ATCTAAACCT chr3L:15637730-15637850 10 6.47e-05 TTAACCCCC GGGTATTT CACATATCAG chr2R:23882377-23882497 86 6.47e-05 AAAGCATTGA GGGTATTT CGACTTATAA chrX:1963332-1963452 81 6.47e-05 GTTCCAGTTG GGGTATTT CGACTCTATG chr3R:24148912-24149032 77 6.47e-05 GATTTAATAG GGGTATTT CAATGATTTC chr3L:13041008-13041128 104 6.47e-05 ACTTTAGTAA GGGTATTT TTTTTCGAC chr2L:4226950-4227070 64 6.47e-05 ATATCGAAAG GGGTATTT TTCAGAATCT chr2R:20562309-20562429 93 7.96e-05 TCTTCAGTAG GGGGACTC GCAATTAAAT chr3R:5483869-5483989 108 7.96e-05 AAAAACTTAG GGGCACTC CTCTG chr2R:24515289-24515409 63 7.96e-05 CCATAGTTAG GGGGACTC CTGCGCTTAC chr3R:4978506-4978626 47 7.96e-05 ATACCATTAG GGGCACTC GAACGCACTC chr3L:16985593-16985713 29 7.96e-05 TTTATAATAG GGGGACTC CCCTTCAATG chr2L:22133106-22133226 79 9.37e-05 AGTATATTAA GGGTACTT CAGGCACTAC chrX:362274-362394 43 1.23e-04 GTCTCGGGCG GGGCATTT TGTCAAACTG chr3L:8457652-8457772 62 1.23e-04 GCGGCATAAG GGGCATTT TCCAGTTGTC chr2L:21262951-21263071 49 1.41e-04 GCATCATCGG TGGTATTC TGTTGCTAAT chr2L:810466-810586 87 1.41e-04 ATATAGGGGT TGGTATTC ACAACCTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19153697-19153817 1.4e-05 74_[+1]_38 chr3R:5223355-5223475 1.4e-05 35_[+1]_77 chr2R:9683206-9683326 1.4e-05 83_[+1]_29 chr3R:13388694-13388814 1.4e-05 80_[+1]_32 chrX:23096670-23096790 1.4e-05 107_[+1]_5 chr2R:13334939-13335059 1.4e-05 102_[+1]_10 chr2L:7155456-7155576 1.4e-05 56_[+1]_56 chr3R:6726265-6726385 1.4e-05 63_[+1]_49 chr4:1181580-1181700 1.4e-05 54_[+1]_58 chr3L:17904624-17904744 1.4e-05 20_[+1]_92 chr3L:21830238-21830358 1.4e-05 78_[+1]_34 chr3L:1784276-1784396 1.4e-05 58_[+1]_54 chr2R:19670521-19670641 1.4e-05 42_[+1]_70 chr2R:5698421-5698541 1.4e-05 85_[+1]_27 chr2R:22640145-22640265 2.4e-05 85_[+1]_27 chr2R:21624174-21624294 2.4e-05 13_[+1]_99 chr3L:4059291-4059411 2.4e-05 63_[+1]_49 chr2L:10266633-10266753 2.4e-05 35_[+1]_77 chr2L:10615208-10615328 4.5e-05 108_[+1]_4 chr3L:2433481-2433601 4.5e-05 61_[+1]_51 chr2L:9495378-9495498 4.5e-05 16_[+1]_96 chr3R:21741115-21741235 4.5e-05 58_[+1]_54 chrX:9580771-9580891 4.5e-05 41_[+1]_71 chrX:2075888-2076008 4.5e-05 59_[+1]_53 chr3L:876221-876341 4.5e-05 44_[+1]_68 chr3L:15637730-15637850 6.5e-05 9_[+1]_103 chr2R:23882377-23882497 6.5e-05 85_[+1]_27 chrX:1963332-1963452 6.5e-05 80_[+1]_32 chr3R:24148912-24149032 6.5e-05 76_[+1]_36 chr3L:13041008-13041128 6.5e-05 103_[+1]_9 chr2L:4226950-4227070 6.5e-05 63_[+1]_49 chr2R:20562309-20562429 8e-05 92_[+1]_20 chr3R:5483869-5483989 8e-05 107_[+1]_5 chr2R:24515289-24515409 8e-05 62_[+1]_50 chr3R:4978506-4978626 8e-05 46_[+1]_66 chr3L:16985593-16985713 8e-05 28_[+1]_84 chr2L:22133106-22133226 9.4e-05 78_[+1]_34 chrX:362274-362394 0.00012 42_[+1]_70 chr3L:8457652-8457772 0.00012 61_[+1]_51 chr2L:21262951-21263071 0.00014 48_[+1]_64 chr2L:810466-810586 0.00014 86_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTATTC width=8 seqs=41 chr3R:19153697-19153817 ( 75) GGGTATTC 1 chr3R:5223355-5223475 ( 36) GGGTATTC 1 chr2R:9683206-9683326 ( 84) GGGTATTC 1 chr3R:13388694-13388814 ( 81) GGGTATTC 1 chrX:23096670-23096790 ( 108) GGGTATTC 1 chr2R:13334939-13335059 ( 103) GGGTATTC 1 chr2L:7155456-7155576 ( 57) GGGTATTC 1 chr3R:6726265-6726385 ( 64) GGGTATTC 1 chr4:1181580-1181700 ( 55) GGGTATTC 1 chr3L:17904624-17904744 ( 21) GGGTATTC 1 chr3L:21830238-21830358 ( 79) GGGTATTC 1 chr3L:1784276-1784396 ( 59) GGGTATTC 1 chr2R:19670521-19670641 ( 43) GGGTATTC 1 chr2R:5698421-5698541 ( 86) GGGTATTC 1 chr2R:22640145-22640265 ( 86) GGGTACTC 1 chr2R:21624174-21624294 ( 14) GGGTACTC 1 chr3L:4059291-4059411 ( 64) GGGTACTC 1 chr2L:10266633-10266753 ( 36) GGGTACTC 1 chr2L:10615208-10615328 ( 109) GGGGATTC 1 chr3L:2433481-2433601 ( 62) GGGCATTC 1 chr2L:9495378-9495498 ( 17) GGGCATTC 1 chr3R:21741115-21741235 ( 59) GGGGATTC 1 chrX:9580771-9580891 ( 42) GGGGATTC 1 chrX:2075888-2076008 ( 60) GGGCATTC 1 chr3L:876221-876341 ( 45) GGGGATTC 1 chr3L:15637730-15637850 ( 10) GGGTATTT 1 chr2R:23882377-23882497 ( 86) GGGTATTT 1 chrX:1963332-1963452 ( 81) GGGTATTT 1 chr3R:24148912-24149032 ( 77) GGGTATTT 1 chr3L:13041008-13041128 ( 104) GGGTATTT 1 chr2L:4226950-4227070 ( 64) GGGTATTT 1 chr2R:20562309-20562429 ( 93) GGGGACTC 1 chr3R:5483869-5483989 ( 108) GGGCACTC 1 chr2R:24515289-24515409 ( 63) GGGGACTC 1 chr3R:4978506-4978626 ( 47) GGGCACTC 1 chr3L:16985593-16985713 ( 29) GGGGACTC 1 chr2L:22133106-22133226 ( 79) GGGTACTT 1 chrX:362274-362394 ( 43) GGGCATTT 1 chr3L:8457652-8457772 ( 62) GGGCATTT 1 chr2L:21262951-21263071 ( 49) TGGTATTC 1 chr2L:810466-810586 ( 87) TGGTATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.70528 E= 1.7e-014 -1200 -1200 215 -256 -1200 -1200 222 -1200 -1200 -1200 222 -1200 -1200 -27 -33 120 177 -1200 -1200 -1200 -1200 25 -1200 140 -1200 -1200 -1200 180 -1200 192 -1200 -39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.7e-014 0.000000 0.000000 0.951220 0.048780 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.170732 0.170732 0.658537 1.000000 0.000000 0.000000 0.000000 0.000000 0.243902 0.000000 0.756098 0.000000 0.000000 0.000000 1.000000 0.000000 0.780488 0.000000 0.219512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTATTC MEME-1 regular expression -------------------------------------------------------------------------------- GGGTA[TC]T[CT] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF AATACCCC MEME-2 width = 8 sites = 28 llr = 270 E-value = 5.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa:8:::: pos.-specific C ::::aa99 probability G ::11::1: matrix T ::91:::1 bits 2.3 ** 2.1 ** 1.8 ** **** 1.6 ** **** Relative 1.4 *** **** Entropy 1.1 *** **** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATACCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25221511-25221631 63 1.29e-05 TAGGGACAAG AATACCCC AACTGAAATG chrX:19243536-19243656 50 1.29e-05 CAAAGTTGGG AATACCCC ATTTGTTTTT chr2R:1590456-1590576 34 1.29e-05 CTTTATTATG AATACCCC AAATAAAAAT chr2L:10204268-10204388 96 1.29e-05 CATCGGTTCG AATACCCC TAACTCCATT chr3R:26978452-26978572 54 1.29e-05 AGCAGCGGCA AATACCCC TAATGACCCA chr2L:11004729-11004849 6 1.29e-05 TTCAT AATACCCC GCTAAGGCGC chr3L:21574438-21574558 52 1.29e-05 GAGAAAACGG AATACCCC AACTTACTCG chr2L:19049018-19049138 28 1.29e-05 AAAGTACCAG AATACCCC CAACAATAAG chr3R:17606011-17606131 47 1.29e-05 AAGATTAGGG AATACCCC AAATGGTATT chr4:156100-156220 44 1.29e-05 TGCTGGATTG AATACCCC TTTGAAAGTT chrX:11891899-11892019 41 1.29e-05 CGTAATCGCG AATACCCC ATATGTAGTA chr2R:22420939-22421059 17 1.29e-05 TAGAATCATG AATACCCC AACTATAAGC chr3R:13304618-13304738 34 1.29e-05 CACACTTGTG AATACCCC CAATGCATTG chr2L:10476985-10477105 57 1.29e-05 GTTCCGTGCA AATACCCC TAATGAAGTT chr3L:6969585-6969705 18 2.23e-05 AATAACTATG AATGCCCC TACTGTTTTA chr3R:5114312-5114432 65 2.23e-05 GCATCCGCAG AATGCCCC TAATGTCCAC chr2L:1211669-1211789 27 2.23e-05 GTACGGCCGG AATGCCCC TCATGCGGAG chr2L:10483194-10483314 42 2.23e-05 GCGGGAAGGG AATGCCCC TAATTCTATC chr3R:24753713-24753833 66 3.20e-05 AACCATTCTG AAGACCCC TAACATTTCA chrX:10621764-10621884 110 3.20e-05 gctatgaagg aagacccc tgt chr3L:18743897-18744017 58 4.46e-05 CTGTAATGGA AATTCCCC TTACGTGCAA chr3R:21347317-21347437 25 4.46e-05 GTCCCGGAGT AATTCCCC TAATGCAATA chr2L:8521836-8521956 11 6.26e-05 TATTTTTACG AATACCCT ACACGATTAC chr2L:10269982-10270102 46 6.26e-05 AACTGGCTGG AATACCCT TGACGATCTA chr2L:810466-810586 52 6.26e-05 AAGCAGCTCG AATACCCT ATACCTACAA chr2R:23882377-23882497 45 7.60e-05 TTCGCCAGTT AATACCGC AGATAGCGGT chrX:9187562-9187682 62 7.60e-05 atcaaaaccg aataccgc atacgagaat chr2L:10344361-10344481 79 8.52e-05 CCACGCGAAA AACACCCC TAACGTGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25221511-25221631 1.3e-05 62_[+2]_50 chrX:19243536-19243656 1.3e-05 49_[+2]_63 chr2R:1590456-1590576 1.3e-05 33_[+2]_79 chr2L:10204268-10204388 1.3e-05 95_[+2]_17 chr3R:26978452-26978572 1.3e-05 53_[+2]_59 chr2L:11004729-11004849 1.3e-05 5_[+2]_107 chr3L:21574438-21574558 1.3e-05 51_[+2]_61 chr2L:19049018-19049138 1.3e-05 27_[+2]_85 chr3R:17606011-17606131 1.3e-05 46_[+2]_66 chr4:156100-156220 1.3e-05 43_[+2]_69 chrX:11891899-11892019 1.3e-05 40_[+2]_72 chr2R:22420939-22421059 1.3e-05 16_[+2]_96 chr3R:13304618-13304738 1.3e-05 33_[+2]_79 chr2L:10476985-10477105 1.3e-05 56_[+2]_56 chr3L:6969585-6969705 2.2e-05 17_[+2]_95 chr3R:5114312-5114432 2.2e-05 64_[+2]_48 chr2L:1211669-1211789 2.2e-05 26_[+2]_86 chr2L:10483194-10483314 2.2e-05 41_[+2]_71 chr3R:24753713-24753833 3.2e-05 65_[+2]_47 chrX:10621764-10621884 3.2e-05 109_[+2]_3 chr3L:18743897-18744017 4.5e-05 57_[+2]_55 chr3R:21347317-21347437 4.5e-05 24_[+2]_88 chr2L:8521836-8521956 6.3e-05 10_[+2]_102 chr2L:10269982-10270102 6.3e-05 45_[+2]_67 chr2L:810466-810586 6.3e-05 51_[+2]_61 chr2R:23882377-23882497 7.6e-05 44_[+2]_68 chrX:9187562-9187682 7.6e-05 61_[+2]_51 chr2L:10344361-10344481 8.5e-05 78_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATACCCC width=8 seqs=28 chr3R:25221511-25221631 ( 63) AATACCCC 1 chrX:19243536-19243656 ( 50) AATACCCC 1 chr2R:1590456-1590576 ( 34) AATACCCC 1 chr2L:10204268-10204388 ( 96) AATACCCC 1 chr3R:26978452-26978572 ( 54) AATACCCC 1 chr2L:11004729-11004849 ( 6) AATACCCC 1 chr3L:21574438-21574558 ( 52) AATACCCC 1 chr2L:19049018-19049138 ( 28) AATACCCC 1 chr3R:17606011-17606131 ( 47) AATACCCC 1 chr4:156100-156220 ( 44) AATACCCC 1 chrX:11891899-11892019 ( 41) AATACCCC 1 chr2R:22420939-22421059 ( 17) AATACCCC 1 chr3R:13304618-13304738 ( 34) AATACCCC 1 chr2L:10476985-10477105 ( 57) AATACCCC 1 chr3L:6969585-6969705 ( 18) AATGCCCC 1 chr3R:5114312-5114432 ( 65) AATGCCCC 1 chr2L:1211669-1211789 ( 27) AATGCCCC 1 chr2L:10483194-10483314 ( 42) AATGCCCC 1 chr3R:24753713-24753833 ( 66) AAGACCCC 1 chrX:10621764-10621884 ( 110) AAGACCCC 1 chr3L:18743897-18744017 ( 58) AATTCCCC 1 chr3R:21347317-21347437 ( 25) AATTCCCC 1 chr2L:8521836-8521956 ( 11) AATACCCT 1 chr2L:10269982-10270102 ( 46) AATACCCT 1 chr2L:810466-810586 ( 52) AATACCCT 1 chr2R:23882377-23882497 ( 45) AATACCGC 1 chrX:9187562-9187682 ( 62) AATACCGC 1 chr2L:10344361-10344481 ( 79) AACACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 5.1e-008 177 -1145 -1145 -1145 177 -1145 -1145 -1145 -1145 -252 -159 164 143 -1145 -59 -201 -1145 228 -1145 -1145 -1145 228 -1145 -1145 -1145 217 -159 -1145 -1145 212 -1145 -142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 5.1e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.035714 0.071429 0.892857 0.785714 0.000000 0.142857 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.892857 0.000000 0.107143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATACCCC MEME-2 regular expression -------------------------------------------------------------------------------- AATACCCC -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-3 width = 8 sites = 8 llr = 92 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a:a: pos.-specific C :::a:a:a probability G aa:::::: matrix T ::a::::: bits 2.3 ** * * * 2.1 ** * * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21262951-21263071 12 9.89e-06 TGTACACTGC GGTCACAC TGGTTCGGAC chr2L:7827771-7827891 30 9.89e-06 CGCGGCAATC GGTCACAC CGAGGGCAGT chrX:19243536-19243656 93 9.89e-06 TTTGGTAATT GGTCACAC TGCTCTCCAA chr2L:870403-870523 60 9.89e-06 AGCAAGGAAA GGTCACAC GATTTTGTGA chrX:6968707-6968827 73 9.89e-06 TCCGACAATT GGTCACAC ATTCGACGAG chr3R:23924307-23924427 94 9.89e-06 TTCCGCATGC GGTCACAC TTAAAAGTGC chr2L:6658429-6658549 93 9.89e-06 GTACTCCAAC GGTCACAC TACTTAGACC chr3R:31617929-31618049 55 9.89e-06 TCATGAGCCT GGTCACAC TGTCTTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21262951-21263071 9.9e-06 11_[+3]_101 chr2L:7827771-7827891 9.9e-06 29_[+3]_83 chrX:19243536-19243656 9.9e-06 92_[+3]_20 chr2L:870403-870523 9.9e-06 59_[+3]_53 chrX:6968707-6968827 9.9e-06 72_[+3]_40 chr3R:23924307-23924427 9.9e-06 93_[+3]_19 chr2L:6658429-6658549 9.9e-06 92_[+3]_20 chr3R:31617929-31618049 9.9e-06 54_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=8 chr2L:21262951-21263071 ( 12) GGTCACAC 1 chr2L:7827771-7827891 ( 30) GGTCACAC 1 chrX:19243536-19243656 ( 93) GGTCACAC 1 chr2L:870403-870523 ( 60) GGTCACAC 1 chrX:6968707-6968827 ( 73) GGTCACAC 1 chr3R:23924307-23924427 ( 94) GGTCACAC 1 chr2L:6658429-6658549 ( 93) GGTCACAC 1 chr3R:31617929-31618049 ( 55) GGTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.1e+002 -965 -965 222 -965 -965 -965 222 -965 -965 -965 -965 180 -965 228 -965 -965 177 -965 -965 -965 -965 228 -965 -965 177 -965 -965 -965 -965 228 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-3 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** MOTIF AMACAMAC MEME-4 width = 8 sites = 38 llr = 324 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a4a:94a: pos.-specific C :6:a16:7 probability G :::::::: matrix T :::::::3 bits 2.3 * 2.1 * 1.8 * ** * 1.6 * ** * Relative 1.4 * *** ** Entropy 1.1 ******** (12.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus A A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13088620-13088740 76 1.31e-05 ATGTATGTac acacacac acgcgcacat chr3R:20551711-20551831 27 1.31e-05 TGTTGTCTGT ACACACAC GAGCTGCCAC chr2L:7528219-7528339 99 1.31e-05 CACACAAACT ACACACAC TCACAGAGAG chr2L:5113575-5113695 41 1.31e-05 ATTTAGTTAA ACACACAC AGAGTATATA chr2R:22525160-22525280 27 1.31e-05 TCAATTTCAC ACACACAC ACAAAGGTGG chr2R:12953382-12953502 55 1.31e-05 CCTTTGTGGA ACACACAC AATCGAACGG chr3R:9918970-9919090 39 1.31e-05 ACCTACACAA ACACACAC CTTTAGGTAC chr2R:13912856-13912976 51 1.31e-05 TTTTCGATTC ACACACAC TCTCGAAACG chr2R:21624174-21624294 69 1.31e-05 TCCATGATAC ACACACAC AATTGCTGAA chrX:6875022-6875142 17 1.31e-05 GTTATcacac acacacac acacacacaa chr3R:6765020-6765140 50 5.02e-05 CGGCTTGTGC AAACACAC ATTAATATGC chr2R:7253913-7254033 34 5.02e-05 TTAACTATTT ACACAAAC ATGTTGGCGC chr3L:16699644-16699764 64 5.02e-05 TCAGTGTACA ACACAAAC AGCTTGCCCG chrX:1183377-1183497 61 5.02e-05 GTGAGCAAAC AAACACAC CTTTTAGGCT chr2L:3576210-3576330 45 5.02e-05 TATTAGTCAA ACACAAAC AATGAATTTC chrX:10044008-10044128 13 5.02e-05 AGTTTGGTCT AAACACAC AATCAACAAC chrX:362274-362394 66 7.65e-05 AACTGTCGAA AAACAAAC AGAGGAACAA chr2R:9266583-9266703 34 7.65e-05 TCGGAAATGT AAACAAAC CAAACGTATC chrX:3832371-3832491 66 7.65e-05 GGACcaaacc aaacaaac aaacaggcag chr3L:9072104-9072224 111 7.65e-05 ACACTAATAT AAACAAAC GG chr4:466827-466947 99 7.65e-05 TGACCAACAT AAACAAAC TGCAATTTTT chr2L:870403-870523 31 7.65e-05 GGTATTTTCT AAACAAAC TTTTATTTTC chr3L:6969585-6969705 101 9.48e-05 GGAGAGTGCG ACACACAT AACGGTGCCT chr3R:9337815-9337935 113 9.48e-05 CCTATGTGTC ACACACAT chr3R:30193977-30194097 87 9.48e-05 CAGCCACTGA ACACACAT TGCGTATGGC chr3L:2254440-2254560 5 1.04e-04 GGAC ACACCCAC GACCCCTTTC chr3L:19924811-19924931 69 1.04e-04 AGCCTTTAGA ACACCCAC TGGACATTTT chr2R:18126330-18126450 78 1.04e-04 ATTACGCAGC ACACCCAC AATTACTCAG chr2L:13903932-13904052 86 1.04e-04 GATACAGTAA ACACCCAC TAGATAGTTG chr3L:8514865-8514985 2 1.56e-04 A ACACAAAT GAAAATATGT chr3L:12796351-12796471 63 1.56e-04 CTCTGGTGGC AAACACAT TGGTATACGA chr2L:10344361-10344481 10 1.56e-04 CATCTGAAC AAACACAT GTTCGCGAGG chr2R:18667154-18667274 32 2.19e-04 GCTCGGGCCT AAACAAAT GTTGGCACTA chr2R:25190587-25190707 67 2.19e-04 CCTGCATACA AAACAAAT ATGTATATTG chr2R:17714558-17714678 3 2.19e-04 AA AAACAAAT TCAAACGTAG chr2L:12457342-12457462 68 2.19e-04 tatgtgtgtT AAACAAAT ATCACAATCG chr3R:27254155-27254275 60 2.19e-04 CATTCTTCGC AAACAAAT AATTTACATA chr3R:26969240-26969360 92 2.37e-04 ATAAGTTGGG AAACCAAC GCCATCGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13088620-13088740 1.3e-05 75_[+4]_37 chr3R:20551711-20551831 1.3e-05 26_[+4]_86 chr2L:7528219-7528339 1.3e-05 98_[+4]_14 chr2L:5113575-5113695 1.3e-05 40_[+4]_72 chr2R:22525160-22525280 1.3e-05 26_[+4]_86 chr2R:12953382-12953502 1.3e-05 54_[+4]_58 chr3R:9918970-9919090 1.3e-05 38_[+4]_74 chr2R:13912856-13912976 1.3e-05 50_[+4]_62 chr2R:21624174-21624294 1.3e-05 68_[+4]_44 chrX:6875022-6875142 1.3e-05 16_[+4]_96 chr3R:6765020-6765140 5e-05 49_[+4]_63 chr2R:7253913-7254033 5e-05 33_[+4]_79 chr3L:16699644-16699764 5e-05 63_[+4]_49 chrX:1183377-1183497 5e-05 60_[+4]_52 chr2L:3576210-3576330 5e-05 44_[+4]_68 chrX:10044008-10044128 5e-05 12_[+4]_100 chrX:362274-362394 7.7e-05 65_[+4]_47 chr2R:9266583-9266703 7.7e-05 33_[+4]_79 chrX:3832371-3832491 7.7e-05 65_[+4]_47 chr3L:9072104-9072224 7.7e-05 110_[+4]_2 chr4:466827-466947 7.7e-05 98_[+4]_14 chr2L:870403-870523 7.7e-05 30_[+4]_82 chr3L:6969585-6969705 9.5e-05 100_[+4]_12 chr3R:9337815-9337935 9.5e-05 112_[+4] chr3R:30193977-30194097 9.5e-05 86_[+4]_26 chr3L:2254440-2254560 0.0001 4_[+4]_108 chr3L:19924811-19924931 0.0001 68_[+4]_44 chr2R:18126330-18126450 0.0001 77_[+4]_35 chr2L:13903932-13904052 0.0001 85_[+4]_27 chr3L:8514865-8514985 0.00016 1_[+4]_111 chr3L:12796351-12796471 0.00016 62_[+4]_50 chr2L:10344361-10344481 0.00016 9_[+4]_103 chr2R:18667154-18667274 0.00022 31_[+4]_81 chr2R:25190587-25190707 0.00022 66_[+4]_46 chr2R:17714558-17714678 0.00022 2_[+4]_110 chr2L:12457342-12457462 0.00022 67_[+4]_45 chr3R:27254155-27254275 0.00022 59_[+4]_53 chr3R:26969240-26969360 0.00024 91_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMACAMAC width=8 seqs=38 chrX:13088620-13088740 ( 76) ACACACAC 1 chr3R:20551711-20551831 ( 27) ACACACAC 1 chr2L:7528219-7528339 ( 99) ACACACAC 1 chr2L:5113575-5113695 ( 41) ACACACAC 1 chr2R:22525160-22525280 ( 27) ACACACAC 1 chr2R:12953382-12953502 ( 55) ACACACAC 1 chr3R:9918970-9919090 ( 39) ACACACAC 1 chr2R:13912856-13912976 ( 51) ACACACAC 1 chr2R:21624174-21624294 ( 69) ACACACAC 1 chrX:6875022-6875142 ( 17) ACACACAC 1 chr3R:6765020-6765140 ( 50) AAACACAC 1 chr2R:7253913-7254033 ( 34) ACACAAAC 1 chr3L:16699644-16699764 ( 64) ACACAAAC 1 chrX:1183377-1183497 ( 61) AAACACAC 1 chr2L:3576210-3576330 ( 45) ACACAAAC 1 chrX:10044008-10044128 ( 13) AAACACAC 1 chrX:362274-362394 ( 66) AAACAAAC 1 chr2R:9266583-9266703 ( 34) AAACAAAC 1 chrX:3832371-3832491 ( 66) AAACAAAC 1 chr3L:9072104-9072224 ( 111) AAACAAAC 1 chr4:466827-466947 ( 99) AAACAAAC 1 chr2L:870403-870523 ( 31) AAACAAAC 1 chr3L:6969585-6969705 ( 101) ACACACAT 1 chr3R:9337815-9337935 ( 113) ACACACAT 1 chr3R:30193977-30194097 ( 87) ACACACAT 1 chr3L:2254440-2254560 ( 5) ACACCCAC 1 chr3L:19924811-19924931 ( 69) ACACCCAC 1 chr2R:18126330-18126450 ( 78) ACACCCAC 1 chr2L:13903932-13904052 ( 86) ACACCCAC 1 chr3L:8514865-8514985 ( 2) ACACAAAT 1 chr3L:12796351-12796471 ( 63) AAACACAT 1 chr2L:10344361-10344481 ( 10) AAACACAT 1 chr2R:18667154-18667274 ( 32) AAACAAAT 1 chr2R:25190587-25190707 ( 67) AAACAAAT 1 chr2R:17714558-17714678 ( 3) AAACAAAT 1 chr2L:12457342-12457462 ( 68) AAACAAAT 1 chr3R:27254155-27254275 ( 60) AAACAAAT 1 chr3R:26969240-26969360 ( 92) AAACCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 2.2e+000 177 -1189 -1189 -1189 61 143 -1189 -1189 177 -1189 -1189 -1189 -1189 228 -1189 -1189 157 -64 -1189 -1189 53 149 -1189 -1189 177 -1189 -1189 -1189 -1189 179 -1189 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.2e+000 1.000000 0.000000 0.000000 0.000000 0.447368 0.552632 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.868421 0.131579 0.000000 0.000000 0.421053 0.578947 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.710526 0.000000 0.289474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACAMAC MEME-4 regular expression -------------------------------------------------------------------------------- A[CA]ACA[CA]A[CT] -------------------------------------------------------------------------------- Time 25.99 secs. ******************************************************************************** ******************************************************************************** MOTIF DGYAAAYA MEME-5 width = 8 sites = 67 llr = 504 E-value = 6.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::8aa:a pos.-specific C 1:42::5: probability G 4a:::::: matrix T 3:6:::5: bits 2.3 * 2.1 * 1.8 * ** * 1.6 * ** * Relative 1.4 * ** * Entropy 1.1 * ***** (10.9 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GGTAAATA consensus A CC C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13438911-13439031 44 1.99e-05 TTGATAAGGC GGTAAACA AAGCCGATAA chr2R:10304284-10304404 84 1.99e-05 TTGTTTGTAG GGTAAACA ACGCGTACAC chr2L:22131334-22131454 113 1.99e-05 ACTTCAAAAA GGTAAACA chr3L:8379311-8379431 65 3.41e-05 ATGTTTGTCG GGCAAACA ATGGGGCGGA chr3R:22635197-22635317 28 3.41e-05 TTTATGGAAC GGCAAACA AAAAGAAACT chr3R:12250422-12250542 75 3.41e-05 TTTATCTGGC GGCAAACA TTTGCCATGA chr3R:23445920-23446040 109 3.41e-05 GTTTGCACTG GGCAAACA ATCG chrX:13820485-13820605 75 3.41e-05 CAATTACTTC GGCAAACA GTGGGAACCA chr3R:31241493-31241613 75 3.41e-05 GTTTGGCTCT GGCAAACA TCGGTGGCAT chrX:8128269-8128389 48 3.41e-05 atGCGATAAA GGCAAACA CCGAAGCTTA chr2L:13735974-13736094 76 3.41e-05 TCTTGCAGTG GGCAAACA TTGAAACAGG chr2R:22525160-22525280 97 6.18e-05 TGCGAAACAG GGTAAATA CCCATCCaag chr3R:23530157-23530277 68 6.18e-05 AAACAAAAAA GGTAAATA TTGACTGAGA chr3R:9918970-9919090 94 6.18e-05 TCGCGCCCAA GGTAAATA TTTCCGCATT chr3R:17606011-17606131 23 6.18e-05 GAAACCTAAC GGTAAATA ATTCAAAAGA chr2R:22738386-22738506 67 6.18e-05 TTGGTCAGCA GGTAAATA TCGAAAGTGT chr3L:15637730-15637850 69 8.17e-05 GAATATACTT GGCAAATA GTCAGCGTTA chr2R:14486959-14487079 45 8.17e-05 TTACCCACAA GGCAAATA TCAACAGAGC chr2L:11845207-11845327 77 8.17e-05 AACCTATGTT GGCAAATA CCAATTTGTA chrX:16917576-16917696 50 8.17e-05 CAAATGGCCT GGCAAATA TTGACTCCCG chr3R:11762552-11762672 68 1.35e-04 ACAAAACAAC TGTAAACA CCACACAGAC chr3R:29138455-29138575 50 1.35e-04 CCAACGGTAA TGTAAACA GTGTTCAAAT chr3L:8514865-8514985 17 1.35e-04 AATGAAAATA TGTAAACA AATGGAAGCT chr2L:13903932-13904052 51 1.35e-04 GAAAAGCTAC AGTAAACA CAGCTGCCAA chr2R:13082119-13082239 88 1.35e-04 TAATGCGGCA TGTAAACA AAATGGGCAC chr2L:10266633-10266753 92 1.35e-04 GTCGCACCGA TGTAAACA GAGTTTTTCG chr3L:483972-484092 73 1.74e-04 AGTCAATAAG TGCAAACA AGGCGAGGCG chr3L:12796351-12796471 81 1.74e-04 TGGTATACGA AGCAAACA AGTCAAATGA chr2R:11706359-11706479 76 1.74e-04 CTTATGAGCG TGCAAACA GCATTGGAAG chr3L:16699644-16699764 36 1.74e-04 GAATTGCATA AGCAAACA GTGTATACAG chr3L:12392910-12393030 63 1.74e-04 ATGAGGTCTG TGCAAACA TTTACGGAGC chr3R:23013584-23013704 33 2.62e-04 ATTAGCACGA AGTAAATA TTCAAAGCAA chr3R:8155880-8156000 88 2.62e-04 GCTAAGGCTA AGTAAATA TATACCGAGT chr2R:17714558-17714678 48 2.62e-04 TAATTTTTTG GGTCAACA TACTCGGTAA chr3R:10150710-10150830 55 2.62e-04 TGGCTTTAAA AGTAAATA CGGGAGGTAA chr3R:6765020-6765140 71 2.62e-04 AATATGCTTA AGTAAATA ACGTTCTCTG chr3R:12701411-12701531 5 2.62e-04 GAAT AGTAAATA TACATATGTA chr3R:19060369-19060489 109 2.62e-04 tatatgtgtg tgtaaata cata chr2L:10211314-10211434 100 2.62e-04 GCTGCGAAAG TGTAAATA ATGGACTCCA chr3R:20276875-20276995 51 2.62e-04 AATGTGGTCA AGTAAATA GAGTGACAAG chr2L:7166050-7166170 58 2.62e-04 GAAAATTGCC TGTAAATA TTTGAGTCAG chr2R:5664293-5664413 9 2.62e-04 GTAGCCAC TGTAAATA TCTGCACACA chr3L:11356105-11356225 31 2.62e-04 GTCTTGGCTT GGTCAACA TCTATTTACC chr2R:18667154-18667274 56 3.26e-04 ACTAACTTCT GGCCAACA ATAACAATGA chr2L:7215783-7215903 84 3.26e-04 TAAATATTTA AGCAAATA CACGAAAATT chr3L:8830575-8830695 95 3.26e-04 aagtgaaaag tgcaaata gagaaggcaa chr3L:8075203-8075323 111 3.26e-04 TCAGTATTCA AGCAAATA AT chr2R:16785626-16785746 90 3.26e-04 TGCATGTGTA AGCAAATA GTTAGACGAC chr3L:18743897-18744017 71 3.26e-04 TCCCCTTACG TGCAAATA TTTTACTCAC chr2L:14398081-14398201 103 3.26e-04 GTGAACAAAT AGCAAATA AAGCCGAGAT chr2R:13912856-13912976 82 3.45e-04 TAGTCAATAT GGTCAATA CAGGCAGACG chr2R:17084256-17084376 100 3.97e-04 ATTGCAAAAG AGTCAACA AATGCTGATC chr2L:9010404-9010524 48 3.97e-04 ATTTGGCTTT AGTCAACA ATTCCTGACT chr3R:11178498-11178618 56 3.97e-04 TTGTTTGTTT TGTCAACA GATTAGATAG chr2R:21611365-21611485 30 3.97e-04 TTGAGTTTTC AGTCAACA GTGGATAATT chrX:9106988-9107108 110 3.97e-04 CTAGCAGTTC AGTCAACA ATT chr2L:17388164-17388284 97 4.77e-04 TCCGTGGGAG AGTCAATA TTGATGTTAT chr2R:9266583-9266703 68 4.77e-04 ACGGCAGTTG TGTCAATA GGTTGGCTCA chr2R:19394567-19394687 20 4.77e-04 AAGCCGGGGT TGTCAATA AAGCTATCAA chr2L:6566136-6566256 14 4.77e-04 TAAATAAATA AGTCAATA TTATGTTCTT chr2L:16499756-16499876 20 4.77e-04 TTGAGGCAAG TGTCAATA GAACACGAGC chr2L:19049018-19049138 101 4.77e-04 TAATGATTTA TGTCAATA GTGCTATCGA chr3R:30193977-30194097 48 4.77e-04 CTGAGTGCGG AGTCAATA TTGACGAATC chr3L:2254440-2254560 60 5.33e-04 CTAATTCATG CGTAAACA TTTGCGCTTG chr2R:14235611-14235731 76 5.47e-04 TGTAGTTGGG CGCAAACA TTTGAATTGC chr2L:5113575-5113695 20 5.74e-04 AAATGACAAA CGTAAATA AACATTTAGT chrX:19375617-19375737 53 5.93e-04 CAATGTAAAA CGCAAATA TTAACACGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13438911-13439031 2e-05 43_[+5]_69 chr2R:10304284-10304404 2e-05 83_[+5]_29 chr2L:22131334-22131454 2e-05 112_[+5] chr3L:8379311-8379431 3.4e-05 64_[+5]_48 chr3R:22635197-22635317 3.4e-05 27_[+5]_85 chr3R:12250422-12250542 3.4e-05 74_[+5]_38 chr3R:23445920-23446040 3.4e-05 108_[+5]_4 chrX:13820485-13820605 3.4e-05 74_[+5]_38 chr3R:31241493-31241613 3.4e-05 74_[+5]_38 chrX:8128269-8128389 3.4e-05 47_[+5]_65 chr2L:13735974-13736094 3.4e-05 75_[+5]_37 chr2R:22525160-22525280 6.2e-05 96_[+5]_16 chr3R:23530157-23530277 6.2e-05 67_[+5]_45 chr3R:9918970-9919090 6.2e-05 93_[+5]_19 chr3R:17606011-17606131 6.2e-05 22_[+5]_90 chr2R:22738386-22738506 6.2e-05 66_[+5]_46 chr3L:15637730-15637850 8.2e-05 68_[+5]_44 chr2R:14486959-14487079 8.2e-05 44_[+5]_68 chr2L:11845207-11845327 8.2e-05 76_[+5]_36 chrX:16917576-16917696 8.2e-05 49_[+5]_63 chr3R:11762552-11762672 0.00014 67_[+5]_45 chr3R:29138455-29138575 0.00014 49_[+5]_63 chr3L:8514865-8514985 0.00014 16_[+5]_96 chr2L:13903932-13904052 0.00014 50_[+5]_62 chr2R:13082119-13082239 0.00014 87_[+5]_25 chr2L:10266633-10266753 0.00014 91_[+5]_21 chr3L:483972-484092 0.00017 72_[+5]_40 chr3L:12796351-12796471 0.00017 80_[+5]_32 chr2R:11706359-11706479 0.00017 75_[+5]_37 chr3L:16699644-16699764 0.00017 35_[+5]_77 chr3L:12392910-12393030 0.00017 62_[+5]_50 chr3R:23013584-23013704 0.00026 32_[+5]_80 chr3R:8155880-8156000 0.00026 87_[+5]_25 chr2R:17714558-17714678 0.00026 47_[+5]_65 chr3R:10150710-10150830 0.00026 54_[+5]_58 chr3R:6765020-6765140 0.00026 70_[+5]_42 chr3R:12701411-12701531 0.00026 4_[+5]_108 chr3R:19060369-19060489 0.00026 108_[+5]_4 chr2L:10211314-10211434 0.00026 99_[+5]_13 chr3R:20276875-20276995 0.00026 50_[+5]_62 chr2L:7166050-7166170 0.00026 57_[+5]_55 chr2R:5664293-5664413 0.00026 8_[+5]_104 chr3L:11356105-11356225 0.00026 30_[+5]_82 chr2R:18667154-18667274 0.00033 55_[+5]_57 chr2L:7215783-7215903 0.00033 83_[+5]_29 chr3L:8830575-8830695 0.00033 94_[+5]_18 chr3L:8075203-8075323 0.00033 110_[+5]_2 chr2R:16785626-16785746 0.00033 89_[+5]_23 chr3L:18743897-18744017 0.00033 70_[+5]_42 chr2L:14398081-14398201 0.00033 102_[+5]_10 chr2R:13912856-13912976 0.00035 81_[+5]_31 chr2R:17084256-17084376 0.0004 99_[+5]_13 chr2L:9010404-9010524 0.0004 47_[+5]_65 chr3R:11178498-11178618 0.0004 55_[+5]_57 chr2R:21611365-21611485 0.0004 29_[+5]_83 chrX:9106988-9107108 0.0004 109_[+5]_3 chr2L:17388164-17388284 0.00048 96_[+5]_16 chr2R:9266583-9266703 0.00048 67_[+5]_45 chr2R:19394567-19394687 0.00048 19_[+5]_93 chr2L:6566136-6566256 0.00048 13_[+5]_99 chr2L:16499756-16499876 0.00048 19_[+5]_93 chr2L:19049018-19049138 0.00048 100_[+5]_12 chr3R:30193977-30194097 0.00048 47_[+5]_65 chr3L:2254440-2254560 0.00053 59_[+5]_53 chr2R:14235611-14235731 0.00055 75_[+5]_37 chr2L:5113575-5113695 0.00057 19_[+5]_93 chrX:19375617-19375737 0.00059 52_[+5]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGYAAAYA width=8 seqs=67 chr2R:13438911-13439031 ( 44) GGTAAACA 1 chr2R:10304284-10304404 ( 84) GGTAAACA 1 chr2L:22131334-22131454 ( 113) GGTAAACA 1 chr3L:8379311-8379431 ( 65) GGCAAACA 1 chr3R:22635197-22635317 ( 28) GGCAAACA 1 chr3R:12250422-12250542 ( 75) GGCAAACA 1 chr3R:23445920-23446040 ( 109) GGCAAACA 1 chrX:13820485-13820605 ( 75) GGCAAACA 1 chr3R:31241493-31241613 ( 75) GGCAAACA 1 chrX:8128269-8128389 ( 48) GGCAAACA 1 chr2L:13735974-13736094 ( 76) GGCAAACA 1 chr2R:22525160-22525280 ( 97) GGTAAATA 1 chr3R:23530157-23530277 ( 68) GGTAAATA 1 chr3R:9918970-9919090 ( 94) GGTAAATA 1 chr3R:17606011-17606131 ( 23) GGTAAATA 1 chr2R:22738386-22738506 ( 67) GGTAAATA 1 chr3L:15637730-15637850 ( 69) GGCAAATA 1 chr2R:14486959-14487079 ( 45) GGCAAATA 1 chr2L:11845207-11845327 ( 77) GGCAAATA 1 chrX:16917576-16917696 ( 50) GGCAAATA 1 chr3R:11762552-11762672 ( 68) TGTAAACA 1 chr3R:29138455-29138575 ( 50) TGTAAACA 1 chr3L:8514865-8514985 ( 17) TGTAAACA 1 chr2L:13903932-13904052 ( 51) AGTAAACA 1 chr2R:13082119-13082239 ( 88) TGTAAACA 1 chr2L:10266633-10266753 ( 92) TGTAAACA 1 chr3L:483972-484092 ( 73) TGCAAACA 1 chr3L:12796351-12796471 ( 81) AGCAAACA 1 chr2R:11706359-11706479 ( 76) TGCAAACA 1 chr3L:16699644-16699764 ( 36) AGCAAACA 1 chr3L:12392910-12393030 ( 63) TGCAAACA 1 chr3R:23013584-23013704 ( 33) AGTAAATA 1 chr3R:8155880-8156000 ( 88) AGTAAATA 1 chr2R:17714558-17714678 ( 48) GGTCAACA 1 chr3R:10150710-10150830 ( 55) AGTAAATA 1 chr3R:6765020-6765140 ( 71) AGTAAATA 1 chr3R:12701411-12701531 ( 5) AGTAAATA 1 chr3R:19060369-19060489 ( 109) TGTAAATA 1 chr2L:10211314-10211434 ( 100) TGTAAATA 1 chr3R:20276875-20276995 ( 51) AGTAAATA 1 chr2L:7166050-7166170 ( 58) TGTAAATA 1 chr2R:5664293-5664413 ( 9) TGTAAATA 1 chr3L:11356105-11356225 ( 31) GGTCAACA 1 chr2R:18667154-18667274 ( 56) GGCCAACA 1 chr2L:7215783-7215903 ( 84) AGCAAATA 1 chr3L:8830575-8830695 ( 95) TGCAAATA 1 chr3L:8075203-8075323 ( 111) AGCAAATA 1 chr2R:16785626-16785746 ( 90) AGCAAATA 1 chr3L:18743897-18744017 ( 71) TGCAAATA 1 chr2L:14398081-14398201 ( 103) AGCAAATA 1 chr2R:13912856-13912976 ( 82) GGTCAATA 1 chr2R:17084256-17084376 ( 100) AGTCAACA 1 chr2L:9010404-9010524 ( 48) AGTCAACA 1 chr3R:11178498-11178618 ( 56) TGTCAACA 1 chr2R:21611365-21611485 ( 30) AGTCAACA 1 chrX:9106988-9107108 ( 110) AGTCAACA 1 chr2L:17388164-17388284 ( 97) AGTCAATA 1 chr2R:9266583-9266703 ( 68) TGTCAATA 1 chr2R:19394567-19394687 ( 20) TGTCAATA 1 chr2L:6566136-6566256 ( 14) AGTCAATA 1 chr2L:16499756-16499876 ( 20) TGTCAATA 1 chr2L:19049018-19049138 ( 101) TGTCAATA 1 chr3R:30193977-30194097 ( 48) AGTCAATA 1 chr3L:2254440-2254560 ( 60) CGTAAACA 1 chr2R:14235611-14235731 ( 76) CGCAAACA 1 chr2L:5113575-5113695 ( 20) CGTAAATA 1 chrX:19375617-19375737 ( 53) CGCAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49857 E= 6.1e-001 3 -178 74 -2 -1271 -1271 222 -1271 -1271 92 -1271 109 138 21 -1271 -1271 177 -1271 -1271 -1271 177 -1271 -1271 -1271 -1271 121 -1271 86 177 -1271 -1271 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 6.1e-001 0.298507 0.059701 0.358209 0.283582 0.000000 0.000000 1.000000 0.000000 0.000000 0.388060 0.000000 0.611940 0.761194 0.238806 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.477612 0.000000 0.522388 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-5 regular expression -------------------------------------------------------------------------------- [GAT]G[TC][AC]AA[TC]A -------------------------------------------------------------------------------- Time 32.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5698421-5698541 1.07e-02 85_[+1(1.41e-05)]_27 chr2R:19670521-19670641 1.22e-02 42_[+1(1.41e-05)]_70 chr2L:10476985-10477105 9.41e-03 56_[+2(1.29e-05)]_56 chr2L:810466-810586 1.82e-03 51_[+2(6.26e-05)]_61 chr3R:27238103-27238223 2.01e-02 86_[+3(8.24e-05)]_26 chr2L:10266633-10266753 6.52e-04 35_[+1(2.43e-05)]_37_[+3(8.24e-05)]_\ 32 chr3L:1784276-1784396 3.48e-02 58_[+1(1.41e-05)]_54 chr2L:10483194-10483314 8.90e-02 41_[+2(2.23e-05)]_71 chr2L:10344361-10344481 1.96e-02 78_[+2(8.52e-05)]_34 chrX:10787559-10787679 3.65e-01 120 chrX:6875022-6875142 4.95e-02 12_[+4(1.31e-05)]_[+4(1.31e-05)]_\ [+4(5.02e-05)]_28_[+4(9.48e-05)]_48 chr2L:1211669-1211789 1.01e-01 26_[+2(2.23e-05)]_86 chr3L:21830238-21830358 1.52e-01 78_[+1(1.41e-05)]_34 chr2R:23811996-23812116 3.75e-01 120 chr3R:16436519-16436639 4.24e-02 120 chrX:16753216-16753336 5.44e-01 120 chr3R:13304618-13304738 6.82e-03 33_[+2(1.29e-05)]_79 chr3L:876221-876341 7.54e-02 44_[+1(4.50e-05)]_68 chr3R:31617929-31618049 5.23e-02 54_[+3(9.89e-06)]_58 chr2L:4226950-4227070 9.52e-02 63_[+1(6.47e-05)]_49 chr3L:13041008-13041128 9.68e-02 103_[+1(6.47e-05)]_9 chr2R:23949276-23949396 2.52e-01 120 chr3L:17904624-17904744 2.42e-02 20_[+1(1.41e-05)]_92 chrX:9187562-9187682 2.88e-02 61_[+2(7.60e-05)]_51 chr3L:8457652-8457772 8.71e-02 120 chr2R:22420939-22421059 3.36e-02 16_[+2(1.29e-05)]_96 chrX:2075888-2076008 9.99e-02 59_[+1(4.50e-05)]_53 chr2L:6658429-6658549 3.25e-04 92_[+3(9.89e-06)]_20 chr3R:23924307-23924427 6.51e-02 93_[+3(9.89e-06)]_19 chr4:1181580-1181700 1.05e-01 54_[+1(1.41e-05)]_58 chr2R:13082119-13082239 1.99e-02 120 chrX:11090252-11090372 8.49e-01 120 chr3R:6726265-6726385 6.88e-02 63_[+1(1.41e-05)]_49 chr2L:10269982-10270102 6.72e-03 45_[+2(6.26e-05)]_67 chr2R:22738386-22738506 2.98e-01 66_[+5(6.18e-05)]_46 chrX:6968707-6968827 1.10e-02 72_[+3(9.89e-06)]_40 chr3R:23538886-23539006 5.11e-01 120 chrX:11891899-11892019 7.64e-02 40_[+2(1.29e-05)]_72 chr2L:22133106-22133226 1.59e-01 78_[+1(9.37e-05)]_34 chr3R:24148912-24149032 2.86e-01 76_[+1(6.47e-05)]_36 chr3R:21347317-21347437 7.62e-02 24_[+2(4.46e-05)]_88 chr3L:10663316-10663436 4.80e-01 120 chr2L:870403-870523 3.54e-04 30_[+4(7.65e-05)]_21_[+3(9.89e-06)]_\ 53 chr3L:18865553-18865673 2.33e-01 120 chr2L:14398081-14398201 1.00e-01 120 chr3L:16985593-16985713 1.02e-01 28_[+1(7.96e-05)]_84 chrX:11872750-11872870 5.71e-01 120 chr3R:5114312-5114432 6.19e-02 64_[+2(2.23e-05)]_48 chrX:14234619-14234739 9.86e-01 120 chr2L:8213934-8214054 1.16e-01 120 chr3L:4059291-4059411 2.35e-02 63_[+1(2.43e-05)]_49 chrX:1963332-1963452 4.13e-02 80_[+1(6.47e-05)]_32 chrX:10044008-10044128 2.38e-02 12_[+4(5.02e-05)]_100 chr2L:4452991-4453111 3.78e-01 120 chr4:156100-156220 6.14e-02 43_[+2(1.29e-05)]_69 chr3L:8523462-8523582 3.05e-01 120 chr3L:21441513-21441633 9.94e-01 120 chr2R:21624174-21624294 2.18e-03 13_[+1(2.43e-05)]_45_[+4(1.31e-05)]_\ 46 chr3L:21201382-21201502 6.70e-01 120 chr3L:4541180-4541300 9.42e-01 120 chr2R:13912856-13912976 1.29e-03 50_[+4(1.31e-05)]_62 chrX:9580771-9580891 3.17e-02 41_[+1(4.50e-05)]_71 chr3R:6206373-6206493 8.44e-01 120 chr2R:20063350-20063470 8.19e-01 120 chr3R:17606011-17606131 1.36e-05 22_[+5(6.18e-05)]_16_[+2(1.29e-05)]_\ 66 chr2L:3576210-3576330 3.89e-02 44_[+4(5.02e-05)]_68 chr3R:21741115-21741235 2.50e-01 58_[+1(4.50e-05)]_54 chr2L:94815-94935 3.85e-01 120 chr3L:11356105-11356225 3.46e-01 120 chrX:14243115-14243235 1.39e-01 120 chr3R:4978506-4978626 1.70e-02 46_[+1(7.96e-05)]_66 chr3R:566831-566951 7.83e-02 120 chr3R:30193977-30194097 9.72e-03 86_[+4(9.48e-05)]_26 chr3L:13949590-13949710 9.99e-01 120 chr2L:19049018-19049138 3.47e-02 27_[+2(1.29e-05)]_85 chr2R:5664293-5664413 7.24e-02 120 chr3L:21574438-21574558 8.27e-03 51_[+2(1.29e-05)]_61 chr2L:7155456-7155576 5.73e-02 56_[+1(1.41e-05)]_56 chr2L:11004729-11004849 1.13e-02 5_[+2(1.29e-05)]_107 chr2L:9495378-9495498 1.50e-01 16_[+1(4.50e-05)]_96 chr3L:18743897-18744017 2.88e-02 57_[+2(4.46e-05)]_55 chr2L:22121038-22121158 3.52e-01 120 chr2R:9586604-9586724 8.96e-01 120 chr3R:9918970-9919090 1.03e-03 38_[+4(1.31e-05)]_47_[+5(6.18e-05)]_\ 19 chr4:466827-466947 2.22e-02 98_[+4(7.65e-05)]_14 chr2L:10472359-10472479 8.54e-01 120 chr2L:13735974-13736094 3.69e-02 37_[+5(8.17e-05)]_30_[+5(3.41e-05)]_\ 37 chr3R:26978452-26978572 5.17e-03 53_[+2(1.29e-05)]_59 chr2R:14235410-14235530 6.75e-01 120 chrX:8128269-8128389 7.42e-02 47_[+5(3.41e-05)]_65 chr2L:13903932-13904052 1.70e-02 120 chr2R:24515289-24515409 3.46e-02 62_[+1(7.96e-05)]_50 chr2L:22131334-22131454 6.40e-03 112_[+5(1.99e-05)] chr3R:24268385-24268505 3.46e-01 120 chr2R:18126330-18126450 4.99e-03 120 chr2L:7166050-7166170 4.41e-01 120 chrX:9106988-9107108 2.55e-01 120 chr3L:9397949-9398069 6.03e-01 120 chr2R:13334939-13335059 3.71e-02 102_[+1(1.41e-05)]_10 chr2L:10204268-10204388 1.09e-01 95_[+2(1.29e-05)]_17 chr3L:13432813-13432933 2.64e-01 120 chr2L:16858687-16858807 2.06e-01 120 chr2L:8521836-8521956 8.90e-02 10_[+2(6.26e-05)]_102 chr3R:11761902-11762022 8.39e-01 120 chr3L:11355545-11355665 2.95e-01 120 chr2R:12953382-12953502 3.40e-03 54_[+4(1.31e-05)]_58 chr3L:8954326-8954446 6.82e-01 120 chr3R:23530157-23530277 4.77e-02 67_[+5(6.18e-05)]_45 chr2L:16499756-16499876 6.65e-01 120 chrX:1183377-1183497 1.09e-02 60_[+4(5.02e-05)]_52 chr3L:11387337-11387457 6.94e-01 120 chr3R:5588908-5589028 5.82e-01 120 chr3L:19924811-19924931 1.47e-03 120 chr3R:5483869-5483989 3.10e-02 107_[+1(7.96e-05)]_5 chr3R:31241493-31241613 6.33e-02 74_[+5(3.41e-05)]_38 chr3L:11413119-11413239 3.53e-01 120 chrX:13820485-13820605 4.57e-02 74_[+5(3.41e-05)]_38 chr2R:10151200-10151320 7.25e-01 120 chr3R:23445920-23446040 3.75e-02 108_[+5(3.41e-05)]_4 chr2R:5663123-5663243 2.30e-01 120 chr3L:12392910-12393030 7.65e-02 120 chrX:2076817-2076937 2.30e-01 120 chr3R:23869006-23869126 6.76e-01 120 chr3L:16699644-16699764 2.83e-02 63_[+4(5.02e-05)]_49 chr2R:11706359-11706479 4.29e-01 120 chr3R:20276875-20276995 2.98e-01 120 chr2R:16785626-16785746 2.91e-01 120 chr3L:8449404-8449524 4.07e-01 120 chrX:23096670-23096790 4.91e-02 107_[+1(1.41e-05)]_5 chr4:167671-167791 6.81e-01 120 chr3L:2433481-2433601 1.11e-01 61_[+1(4.50e-05)]_51 chr3L:9072104-9072224 7.10e-03 110_[+4(7.65e-05)]_2 chr3R:4445296-4445416 5.50e-02 120 chr2L:10331391-10331511 9.15e-02 120 chr2L:3151196-3151316 3.19e-01 120 chr3R:12585867-12585987 1.68e-01 120 chr2R:11641905-11642025 6.80e-01 120 chr3L:12796351-12796471 4.04e-03 59_[+5(3.41e-05)]_53 chr3L:2254440-2254560 4.02e-04 [+3(8.24e-05)]_112 chrX:10621764-10621884 1.72e-02 109_[+2(3.20e-05)]_3 chr2L:18335748-18335868 8.81e-01 120 chr3R:3734754-3734874 8.27e-01 120 chr3L:15632808-15632928 4.54e-01 120 chr2L:20016549-20016669 3.35e-01 120 chr2L:10211314-10211434 2.84e-01 120 chr3L:8075203-8075323 6.11e-02 120 chr3R:12250422-12250542 8.45e-02 74_[+5(3.41e-05)]_38 chrX:2192023-2192143 1.56e-02 120 chrX:19375617-19375737 1.36e-01 120 chr2L:21329512-21329632 1.91e-01 120 chr3R:12712094-12712214 6.37e-01 120 chr2R:1590456-1590576 1.91e-02 33_[+2(1.29e-05)]_79 chr3L:8830575-8830695 5.18e-01 120 chr2R:21611365-21611485 2.63e-01 120 chr3L:4220820-4220940 4.12e-01 120 chr3R:19467587-19467707 6.18e-01 120 chr3L:7000115-7000235 9.47e-01 120 chrX:16917576-16917696 1.65e-01 49_[+5(8.17e-05)]_63 chr2R:21874156-21874276 8.37e-01 120 chr2R:23646004-23646124 2.09e-01 120 chr2R:14235611-14235731 2.36e-01 120 chr3R:12717619-12717739 3.94e-01 120 chr2R:16565453-16565573 6.91e-01 120 chr3R:13388694-13388814 1.02e-02 80_[+1(1.41e-05)]_32 chr3L:11454555-11454675 4.67e-01 120 chr3R:11178498-11178618 6.16e-01 120 chrX:9644960-9645080 5.35e-01 120 chr2R:8797617-8797737 8.37e-01 120 chr3R:22573709-22573829 7.33e-01 120 chrX:19243536-19243656 4.33e-04 49_[+2(1.29e-05)]_35_[+3(9.89e-06)]_\ 20 chr4:646559-646679 2.12e-01 120 chr4:315533-315653 4.96e-02 120 chr2L:6566136-6566256 5.28e-01 120 chr3R:29066410-29066530 7.24e-01 120 chr2L:7215783-7215903 1.51e-01 120 chr3R:25221511-25221631 8.10e-03 62_[+2(1.29e-05)]_50 chr3R:19060369-19060489 9.44e-02 120 chr3R:27254155-27254275 1.08e-01 120 chr3L:2469764-2469884 6.81e-01 120 chr2L:10206777-10206897 3.22e-01 120 chr2R:13168612-13168732 1.00e-01 120 chr2R:19394567-19394687 3.43e-01 120 chr2R:23882377-23882497 1.06e-02 44_[+2(7.60e-05)]_33_[+1(6.47e-05)]_\ 27 chr3L:8514865-8514985 2.33e-02 120 chr3L:6140344-6140464 6.42e-01 120 chr3L:20976532-20976652 3.14e-02 120 chrX:10731301-10731421 2.31e-01 120 chr3R:16206312-16206432 6.56e-01 120 chr2L:11845207-11845327 6.38e-03 76_[+5(8.17e-05)]_36 chr2R:22525160-22525280 8.74e-05 24_[+4(1.31e-05)]_64_[+5(6.18e-05)]_\ 16 chr2R:7253913-7254033 5.58e-02 33_[+4(5.02e-05)]_79 chr3R:24753713-24753833 1.96e-01 65_[+2(3.20e-05)]_47 chr2L:5113575-5113695 5.29e-03 40_[+4(1.31e-05)]_72 chr2L:12020742-12020862 5.51e-01 120 chr2L:12457342-12457462 3.01e-01 120 chr3R:29138455-29138575 3.37e-01 120 chrX:3832371-3832491 7.69e-02 65_[+4(7.65e-05)]_12_[+4(7.65e-05)]_\ 18_[+4(7.65e-05)]_1 chr2R:20562309-20562429 7.69e-02 92_[+1(7.96e-05)]_20 chr2R:21624373-21624493 7.95e-01 120 chr3R:12701411-12701531 3.10e-01 120 chr2R:14486959-14487079 9.63e-02 44_[+5(8.17e-05)]_68 chr2L:9010404-9010524 2.18e-01 120 chr3L:15597158-15597278 6.35e-01 120 chrX:16598353-16598473 3.74e-01 120 chr2R:9266583-9266703 1.32e-02 33_[+4(7.65e-05)]_79 chr3R:22635197-22635317 2.95e-02 27_[+5(3.41e-05)]_85 chr2R:10304284-10304404 4.31e-02 83_[+5(1.99e-05)]_29 chr2L:9437228-9437348 4.00e-01 120 chr2R:18567314-18567434 3.89e-01 120 chr3L:483972-484092 4.13e-01 120 chr3R:26969240-26969360 2.15e-01 120 chr3R:6765020-6765140 1.65e-02 49_[+4(5.02e-05)]_63 chr2R:9683206-9683326 1.99e-02 83_[+1(1.41e-05)]_29 chr2L:14527347-14527467 6.09e-01 120 chr2L:7827771-7827891 8.03e-03 29_[+3(9.89e-06)]_83 chr2L:12474539-12474659 7.18e-01 120 chr3R:5297511-5297631 5.95e-01 120 chr2L:17388164-17388284 2.69e-01 120 chr2L:21262951-21263071 7.47e-03 11_[+3(9.89e-06)]_101 chr3R:5223355-5223475 3.97e-02 35_[+1(1.41e-05)]_77 chr4:181760-181880 8.03e-01 120 chr3R:10150710-10150830 1.51e-01 120 chr2L:7528219-7528339 7.36e-02 89_[+4(5.02e-05)]_1_[+4(1.31e-05)]_\ 14 chr2L:10615208-10615328 2.16e-02 108_[+1(4.50e-05)]_4 chr2R:17084256-17084376 1.07e-01 120 chrX:3359005-3359125 9.50e-01 120 chrX:5916141-5916261 1.03e-01 120 chr2R:17714558-17714678 6.20e-02 120 chr3R:11762552-11762672 3.89e-03 120 chr3R:19153697-19153817 6.54e-02 74_[+1(1.41e-05)]_38 chr3L:6612792-6612912 2.36e-01 120 chr3L:8379311-8379431 9.95e-02 64_[+5(3.41e-05)]_48 chr3R:8155880-8156000 1.28e-01 120 chr3R:20551711-20551831 1.14e-02 26_[+4(1.31e-05)]_86 chr3R:23013584-23013704 4.67e-01 120 chr2R:13438911-13439031 4.11e-02 43_[+5(1.99e-05)]_69 chr2R:6244956-6245076 5.35e-01 120 chr3R:10599038-10599158 4.41e-01 120 chr3L:15637730-15637850 2.64e-02 9_[+1(6.47e-05)]_51_[+5(8.17e-05)]_\ 44 chrX:13088620-13088740 1.15e-02 73_[+4(1.31e-05)]_39 chr3L:9372740-9372860 2.95e-01 120 chr2L:10146882-10147002 6.05e-02 120 chr2R:22640145-22640265 2.21e-02 85_[+1(2.43e-05)]_27 chrX:362274-362394 1.15e-02 65_[+4(7.65e-05)]_47 chr2R:13623526-13623646 9.40e-01 120 chr2R:25190587-25190707 1.31e-01 120 chr3R:9337815-9337935 1.77e-02 112_[+4(9.48e-05)] chr3L:6969585-6969705 1.78e-03 17_[+2(2.23e-05)]_75_[+4(9.48e-05)]_\ 12 chr2R:18440385-18440505 1.34e-01 120 chr2R:18667154-18667274 8.32e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************