******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/vri.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6358320-6358440 1.0000 120 chr3L:4132727-4132847 1.0000 120 chr2R:24749953-24750073 1.0000 120 chr3L:19703439-19703559 1.0000 120 chr2L:7440758-7440878 1.0000 120 chr3L:16879158-16879278 1.0000 120 chr3L:21342729-21342849 1.0000 120 chrX:1346446-1346566 1.0000 120 chr2R:24335710-24335830 1.0000 120 chr2L:300141-300261 1.0000 120 chr3L:5553867-5553987 1.0000 120 chr3L:14646048-14646168 1.0000 120 chr2L:16843002-16843122 1.0000 120 chr2L:8033238-8033358 1.0000 120 chr3R:17008430-17008550 1.0000 120 chr3R:11640362-11640482 1.0000 120 chrX:17186593-17186713 1.0000 120 chr3L:3054236-3054356 1.0000 120 chrX:6062285-6062405 1.0000 120 chr2R:8552367-8552487 1.0000 120 chr3R:9917546-9917666 1.0000 120 chr3R:18395023-18395143 1.0000 120 chr3R:15855927-15856047 1.0000 120 chr2R:16223041-16223161 1.0000 120 chr3R:15508885-15509005 1.0000 120 chr3L:5353737-5353857 1.0000 120 chr3L:13952639-13952759 1.0000 120 chr2R:24677712-24677832 1.0000 120 chr2R:6138902-6139022 1.0000 120 chr3L:17995925-17996045 1.0000 120 chr2L:9501455-9501575 1.0000 120 chr2L:1748513-1748633 1.0000 120 chr2R:10852905-10853025 1.0000 120 chr2R:22079096-22079216 1.0000 120 chr2L:13576461-13576581 1.0000 120 chr3L:11218984-11219104 1.0000 120 chrX:16702053-16702173 1.0000 120 chr3L:5753761-5753881 1.0000 120 chr3R:9043751-9043871 1.0000 120 chr3R:30297817-30297937 1.0000 120 chrX:1172585-1172705 1.0000 120 chr2L:19989553-19989673 1.0000 120 chr3L:1827947-1828067 1.0000 120 chr2L:10456061-10456181 1.0000 120 chr3R:7175772-7175892 1.0000 120 chrX:2349621-2349741 1.0000 120 chr2L:3341373-3341493 1.0000 120 chr2L:8399986-8400106 1.0000 120 chr2R:6779206-6779326 1.0000 120 chr2R:14225694-14225814 1.0000 120 chr2L:10500451-10500571 1.0000 120 chr3L:18952544-18952664 1.0000 120 chr3L:17392550-17392670 1.0000 120 chr2R:21159494-21159614 1.0000 120 chr3L:3776837-3776957 1.0000 120 chr3L:22839400-22839520 1.0000 120 chr2L:6780493-6780613 1.0000 120 chr3R:9351537-9351657 1.0000 120 chr2L:5520906-5521026 1.0000 120 chrX:10046893-10047013 1.0000 120 chr3L:15303772-15303892 1.0000 120 chrX:2295521-2295641 1.0000 120 chr3R:21890089-21890209 1.0000 120 chr2R:19234672-19234792 1.0000 120 chr2L:1631539-1631659 1.0000 120 chr3L:1305499-1305619 1.0000 120 chr3L:15140399-15140519 1.0000 120 chr2R:15555574-15555694 1.0000 120 chr3R:26463701-26463821 1.0000 120 chr3L:11242034-11242154 1.0000 120 chrX:13980387-13980507 1.0000 120 chr2R:11187655-11187775 1.0000 120 chr2L:3165375-3165495 1.0000 120 chrX:11856414-11856534 1.0000 120 chr3R:22022788-22022908 1.0000 120 chrX:1610179-1610299 1.0000 120 chr2L:3894652-3894772 1.0000 120 chr2R:11097655-11097775 1.0000 120 chrX:598436-598556 1.0000 120 chr2L:1742735-1742855 1.0000 120 chr3R:30385689-30385809 1.0000 120 chr2L:10320487-10320607 1.0000 120 chr3R:12379396-12379516 1.0000 120 chr3L:11264141-11264261 1.0000 120 chr3R:13783506-13783626 1.0000 120 chr2L:13515774-13515894 1.0000 120 chrX:17624615-17624735 1.0000 120 chrX:6706031-6706151 1.0000 120 chr2R:17781507-17781627 1.0000 120 chr3R:21015721-21015841 1.0000 120 chr2L:2765253-2765373 1.0000 120 chr3R:14290557-14290677 1.0000 120 chr3L:10223542-10223662 1.0000 120 chr3R:30391250-30391370 1.0000 120 chr2R:7283922-7284042 1.0000 120 chr3R:30272315-30272435 1.0000 120 chr3L:16145482-16145602 1.0000 120 chrX:3772448-3772568 1.0000 120 chr3L:11065963-11066083 1.0000 120 chr3R:13017708-13017828 1.0000 120 chrX:2193312-2193432 1.0000 120 chrX:3721191-3721311 1.0000 120 chr3L:16383216-16383336 1.0000 120 chr3L:18812252-18812372 1.0000 120 chr3L:16895553-16895673 1.0000 120 chr3L:17624034-17624154 1.0000 120 chr3L:3926525-3926645 1.0000 120 chr2L:16255925-16256045 1.0000 120 chrX:5884438-5884558 1.0000 120 chr2L:9513898-9514018 1.0000 120 chrX:8111070-8111190 1.0000 120 chr2L:9707661-9707781 1.0000 120 chr3L:1739771-1739891 1.0000 120 chr2R:19200938-19201058 1.0000 120 chr2R:9028833-9028953 1.0000 120 chr2R:19459569-19459689 1.0000 120 chr3R:21172194-21172314 1.0000 120 chr2L:5311033-5311153 1.0000 120 chr3R:12450776-12450896 1.0000 120 chrX:2197573-2197693 1.0000 120 chr3L:9674424-9674544 1.0000 120 chr3R:30451089-30451209 1.0000 120 chr3R:17111190-17111310 1.0000 120 chrX:11548026-11548146 1.0000 120 chr2R:8453476-8453596 1.0000 120 chr3R:12648884-12649004 1.0000 120 chr3L:6141652-6141772 1.0000 120 chr3L:3086707-3086827 1.0000 120 chr2R:9129577-9129697 1.0000 120 chr2R:23718197-23718317 1.0000 120 chr2R:9130475-9130595 1.0000 120 chr2L:18953640-18953760 1.0000 120 chr2R:14493610-14493730 1.0000 120 chr3R:24161123-24161243 1.0000 120 chr3R:5299711-5299831 1.0000 120 chr2R:24130683-24130803 1.0000 120 chr3R:9927270-9927390 1.0000 120 chrX:11420124-11420244 1.0000 120 chrX:9991151-9991271 1.0000 120 chr2L:8946823-8946943 1.0000 120 chr3L:21979940-21980060 1.0000 120 chr4:358204-358324 1.0000 120 chr3L:6219688-6219808 1.0000 120 chr2R:10043911-10044031 1.0000 120 chr3R:21970109-21970229 1.0000 120 chr3R:27927044-27927164 1.0000 120 chr3R:19835148-19835268 1.0000 120 chr3R:12700132-12700252 1.0000 120 chr3R:21754041-21754161 1.0000 120 chr2L:7678381-7678501 1.0000 120 chr2R:13025511-13025631 1.0000 120 chrX:8460729-8460849 1.0000 120 chr3R:5261387-5261507 1.0000 120 chr2R:14515638-14515758 1.0000 120 chr3L:6036271-6036391 1.0000 120 chr3R:16292047-16292167 1.0000 120 chr3L:1325434-1325554 1.0000 120 chr3R:19910475-19910595 1.0000 120 chr2R:19502665-19502785 1.0000 120 chr2L:20337913-20338033 1.0000 120 chr3R:9886178-9886298 1.0000 120 chr2R:18057265-18057385 1.0000 120 chr3L:11525935-11526055 1.0000 120 chrX:2049223-2049343 1.0000 120 chr3R:23316978-23317098 1.0000 120 chrX:493049-493169 1.0000 120 chr3L:16867356-16867476 1.0000 120 chr3R:7173029-7173149 1.0000 120 chr3R:11245931-11246051 1.0000 120 chrX:9103404-9103524 1.0000 120 chr3R:5621839-5621959 1.0000 120 chr2R:12166404-12166524 1.0000 120 chr3L:9766531-9766651 1.0000 120 chr2L:5765281-5765401 1.0000 120 chr3L:18792129-18792249 1.0000 120 chr3L:9056091-9056211 1.0000 120 chrX:2302952-2303072 1.0000 120 chr2R:12263204-12263324 1.0000 120 chr3L:16984139-16984259 1.0000 120 chr3R:8668611-8668731 1.0000 120 chr2R:13997419-13997539 1.0000 120 chrX:16645594-16645714 1.0000 120 chr2R:20256785-20256905 1.0000 120 chr2R:19981047-19981167 1.0000 120 chr3R:14458580-14458700 1.0000 120 chr3R:8353122-8353242 1.0000 120 chrX:2142717-2142837 1.0000 120 chrX:13372654-13372774 1.0000 120 chr2R:6522884-6523004 1.0000 120 chr2L:3649248-3649368 1.0000 120 chr2R:23552225-23552345 1.0000 120 chr2R:16127359-16127479 1.0000 120 chr3R:9570795-9570915 1.0000 120 chr3R:21745120-21745240 1.0000 120 chr3R:9597436-9597556 1.0000 120 chr2R:22545090-22545210 1.0000 120 chr3L:8842539-8842659 1.0000 120 chr2R:7780378-7780498 1.0000 120 chr3L:6962267-6962387 1.0000 120 chr2L:1693071-1693191 1.0000 120 chrX:3260670-3260790 1.0000 120 chr3L:2490927-2491047 1.0000 120 chr3L:4120621-4120741 1.0000 120 chr2R:13335955-13336075 1.0000 120 chr3R:22782167-22782287 1.0000 120 chr2L:10502357-10502477 1.0000 120 chrX:9036253-9036373 1.0000 120 chr2L:6960328-6960448 1.0000 120 chr2L:12028924-12029044 1.0000 120 chr2L:18509264-18509384 1.0000 120 chr2R:10883401-10883521 1.0000 120 chr3R:20316682-20316802 1.0000 120 chr3R:12365569-12365689 1.0000 120 chr3R:23773892-23774012 1.0000 120 chr2R:16139613-16139733 1.0000 120 chr2R:9136775-9136895 1.0000 120 chr2L:6683489-6683609 1.0000 120 chr3R:18481738-18481858 1.0000 120 chr3L:18099852-18099972 1.0000 120 chr3R:10870736-10870856 1.0000 120 chr3R:15298160-15298280 1.0000 120 chr3R:6112853-6112973 1.0000 120 chr2R:22589380-22589500 1.0000 120 chrX:8881833-8881953 1.0000 120 chr3L:14006867-14006987 1.0000 120 chr3R:7188127-7188247 1.0000 120 chr3L:19696228-19696348 1.0000 120 chr2R:14134700-14134820 1.0000 120 chr3L:3350547-3350667 1.0000 120 chrX:19293434-19293554 1.0000 120 chr3R:11637729-11637849 1.0000 120 chr3L:8689062-8689182 1.0000 120 chr3R:9338871-9338991 1.0000 120 chr2R:9427334-9427454 1.0000 120 chr2R:9036446-9036566 1.0000 120 chr3L:11239518-11239638 1.0000 120 chr3L:12079585-12079705 1.0000 120 chr3L:11973016-11973136 1.0000 120 chr3L:2648099-2648219 1.0000 120 chr3R:9963797-9963917 1.0000 120 chr2L:6658128-6658248 1.0000 120 chr3L:14207528-14207648 1.0000 120 chr2R:7153502-7153622 1.0000 120 chr3L:5181133-5181253 1.0000 120 chr2L:15612113-15612233 1.0000 120 chr2L:1722409-1722529 1.0000 120 chr2L:3372161-3372281 1.0000 120 chr2L:9619017-9619137 1.0000 120 chrX:7735352-7735472 1.0000 120 chrX:2033190-2033310 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_vri/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/vri.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.221 G 0.217 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.221 G 0.217 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTAYRTAA MEME-1 width = 8 sites = 154 llr = 1054 E-value = 3.2e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::7:418a pos.-specific C :::5:32: probability G :23:6::: matrix T a8:5:6:: bits 2.2 2.0 1.8 * * 1.5 * * Relative 1.3 * ** Entropy 1.1 ***** ** (9.9 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTACGTAA consensus GTAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7153502-7153622 31 2.36e-05 TAATTGGGGC TTACGTAA TAGGCAGCTG chr3L:12079585-12079705 61 2.36e-05 TCGTCGAATT TTACGTAA TGCCTCTCTG chr2R:9036446-9036566 37 2.36e-05 GAGCACGCGC TTACGTAA GAGCAAAAAG chrX:19293434-19293554 32 2.36e-05 TTTTGGGGTC TTACGTAA ACACTTTCCT chr3L:3350547-3350667 15 2.36e-05 TTGTCCAGTA TTACGTAA AACGAACCGT chr2R:13997419-13997539 25 2.36e-05 GATATCGAAA TTACGTAA AGATGAATGG chrX:2295521-2295641 15 2.36e-05 AAGTTCGGAA TTACGTAA TTAAGCGGca chr3L:15303772-15303892 107 2.36e-05 TGGCCTGAGT TTACGTAA TCGTAG chr3L:3776837-3776957 26 2.36e-05 GCCGAGAGGC TTACGTAA GAATCCAAAT chr3L:21342729-21342849 40 2.36e-05 CGTTCCATGT TTACGTAA GCGCCGAGGG chr2R:24749953-24750073 21 2.36e-05 ATGTTGTGGC TTACGTAA GGGCAAGCAA chr2L:1722409-1722529 29 5.38e-05 CCTCTTCAAC TTATGTAA GCCCCTTGGA chr3L:11239518-11239638 80 5.38e-05 ATTTCGTTGA TTATGTAA ATCAATTGAG chr3L:19696228-19696348 48 5.38e-05 CCAGTCGCTG TTATGTAA AGCACATGGA chr2R:22589380-22589500 48 5.38e-05 GTGCTCGAAG TTATGTAA ACCTCTCTTA chr2R:14515638-14515758 77 5.38e-05 TATGGTCAAC TTATGTAA TTTATGTATG chr3R:21015721-21015841 27 5.38e-05 TCTGCTGCGG TTATGTAA TGCCCCAAAA chr2R:22079096-22079216 12 5.38e-05 CTTGCTGGAA TTATGTAA ATTAATCAAT chr3L:5553867-5553987 74 5.38e-05 GCATCGATGC TTATGTAA CCGGAGTTGA chr3R:12365569-12365689 72 7.23e-05 CTGAACCTGG TTACGCAA TCTCTATAAT chrX:13372654-13372774 60 7.23e-05 ATTTTTTGCA TTACGCAA TTGGCGTTTC chr3L:16984139-16984259 33 7.23e-05 TCACTGCCCG TTACGCAA AACCAATTGC chrX:5884438-5884558 34 7.23e-05 CCGAGTGATA TTACGCAA TCGCAGAGGC chr2R:7283922-7284042 62 7.23e-05 CAGAAATCGG TTACGCAA CGGACGAGCT chr2R:11187655-11187775 69 7.23e-05 GCAATAGATA TTACGCAA TCAACAGGCA chr3R:9043751-9043871 46 7.23e-05 GTCACTGCAG TTACGCAA CAGTAATTCC chr2L:10502357-10502477 76 9.06e-05 AGTGCAATAA TTGCGTAA CCAAGAGTTC chrX:493049-493169 41 9.06e-05 CAGCGACGTA TTGCGTAA CATGTGTTGT chr3R:30391250-30391370 81 9.06e-05 TGTCACATTG TTGCGTAA GCCGATGCAA chr2L:3165375-3165495 69 9.06e-05 ACAACAAAGA TTGCGTAA GCAGAGTTCT chrX:13980387-13980507 27 9.06e-05 CCACACACCG TTGCGTAA TAAAAGAGCA chr3R:9351537-9351657 60 9.06e-05 CGCTTTCGAC TTGCGTAA TAATGCCTTT chrX:7735352-7735472 68 1.21e-04 AATGCGTTCA TTACATAA TTAAGTGATT chr3L:14006867-14006987 61 1.21e-04 TTTTATTTTG TTACATAA CTCAAATCTG chrX:9103404-9103524 37 1.21e-04 CACGCTCAAC TTACATAA TATCAGATCG chr2R:9129577-9129697 100 1.21e-04 TCGCTCCCAG TTACATAA AGTCGTTAGA chr3R:30272315-30272435 10 1.21e-04 TTTTGGGAA TTACATAA GCGAATCTTC chr3L:17392550-17392670 75 1.21e-04 GCTTCGACCA TTACATAA CCGAGTGACC chr3L:18952544-18952664 47 1.21e-04 AACACAGAGA TTACATAA TGGGCTGTGC chr3L:6962267-6962387 58 1.45e-04 ACCAAGCCGC TTATGCAA TACGTGTATT chr2R:6522884-6523004 108 1.45e-04 CCACACTGTG TTATGCAA CAGCA chr3R:14458580-14458700 63 1.45e-04 CTGTGGGGCA TTATGCAA CCGCTGCACA chr3L:9056091-9056211 105 1.45e-04 GTATCTGTGA TTATGCAA CTGCCTGG chr2L:5765281-5765401 94 1.45e-04 CAGGCAAAGA TTATGCAA TAGCCATGTT chr3R:11245931-11246051 77 1.45e-04 TCGCATTTGT TTATGCAA TTTCCCGTGG chr3L:6219688-6219808 94 1.45e-04 CGCCTTTGCC TTATGCAA TACACGCAAA chrX:11420124-11420244 7 1.45e-04 GATGCG TTATGCAA CTTTATGACG chr2R:9028833-9028953 1 1.45e-04 . TTATGCAA TAAGCCAGCC chr3L:3926525-3926645 91 1.45e-04 TACGTAAGGT TTATGCAA CGGTATCGCT chr3L:17624034-17624154 27 1.45e-04 TTTGTACGGA TTATGCAA CCGCAATTAC chr2L:10320487-10320607 65 1.45e-04 ACAATTATAA TTATGCAA TTACCGTTGA chrX:11856414-11856534 47 1.45e-04 GTGCCAATTG TTATGCAA TATTTATAAT chrX:10046893-10047013 85 1.45e-04 GGGATTCAGA TTATGCAA TCACATTGGC chr2L:6780493-6780613 64 1.45e-04 GGGACAGGGC TTATGCAA TCTAAACGGG chr3L:17995925-17996045 36 1.45e-04 AAAATTCCGA TTATGCAA TGGGATATTT chr2L:16843002-16843122 75 1.45e-04 ATTGCAGCTC TTATGCAA TCCGGCAGTG chr3L:14646048-14646168 61 1.45e-04 CATTAACAAA TTATGCAA TAAATGCAGG chr2L:9707661-9707781 89 1.68e-04 ATGAGGCTAC TTGTGTAA ACAGAACCAA chr3L:11218984-11219104 91 1.68e-04 ACTGCTATAA TTGTGTAA GATTTGGCAA chr2L:3372161-3372281 52 2.39e-04 GGAGCAACTG TTGCGCAA TAAACGCAAA chr3R:6112853-6112973 104 2.39e-04 ATATGGACGG TTATATAA TCGCAACGG chr3R:21745120-21745240 67 2.39e-04 TTATCGAGAA TTGCGCAA CAATCTTTAT chr2R:19981047-19981167 108 2.39e-04 ACTTGCTGAG TTATATAA CTCGG chr3L:9766531-9766651 6 2.39e-04 AATTG TTGCGCAA CATTCGGTAC chr3R:23316978-23317098 41 2.39e-04 GTGTGAGTAA TTGCGCAA TTAGCACACG chr3L:16383216-16383336 62 2.39e-04 AAATACAGTA TTATATAA CTAAAGCACT chrX:3721191-3721311 103 2.39e-04 ATAGGGGCCT TTATATAA GCCACACAGT chr2R:19234672-19234792 69 2.39e-04 ACTTGCCGGC TTATATAA CCCACACCGA chr2R:16223041-16223161 64 2.39e-04 TGCTCAGGTA TTATATAA CCATGTTGAC chr3L:4132727-4132847 79 2.39e-04 TGGAATTCCA TGACGTAA GCAAGACGAC chr2R:9136775-9136895 76 2.63e-04 TTTACGGCGA TTACACAA CCCGGGGCGA chr2L:2765253-2765373 21 2.63e-04 GAGATAATGG TTACACAA ACCTTTTTGG chrX:2033190-2033310 84 3.29e-04 TAATTTACGG TTACGAAA TACGTACATA chr3R:7188127-7188247 57 3.29e-04 ctctctAATG TTACGTCA CTTTCCCACG chr2R:16139613-16139733 63 3.29e-04 ATGAATGTTA TTGCATAA TTTAAATAAC chr3R:8668611-8668731 42 3.29e-04 TGGATTTCTA TTGCATAA TTTTCCAACT chr4:358204-358324 56 3.29e-04 AACAGAAATC TTACGTCA TGTCACGACA chr3R:24161123-24161243 73 3.29e-04 GCTCCAACAA TTGCATAA TTTATCGCGG chr2R:17781507-17781627 54 3.29e-04 CGCAGCGTAA TTACGTCA CTCTGCGACA chrX:6706031-6706151 32 3.29e-04 TTTGGGGGCA TTGCATAA TCAGTACAAT chr3R:30385689-30385809 36 3.29e-04 ATCTCGGCGA TTGCATAA TGTGGAGCCC chr2L:1742735-1742855 59 3.29e-04 TTCTCAGCCA TTGCATAA TTAGGACTTC chr3R:26463701-26463821 26 3.29e-04 TCTGACCCAG TTACGAAA CGGCCTTCCA chr2R:15555574-15555694 96 3.29e-04 TTCGATTGCG TTACGAAA AGCGGTAATA chr2R:21159494-21159614 75 3.29e-04 TGGCTGCTTT TTGCATAA CTCGAGGGAA chr3R:7175772-7175892 66 3.29e-04 GTCACCTGGA TTGCATAA TGGCAACGAG chr3L:1827947-1828067 56 3.29e-04 AGCGGAGGGA TTGCATAA TGTCATGGGT chr2L:19989553-19989673 76 3.29e-04 ACACGAAGTG TTGCATAA TCGAGACCGC chr3R:9917546-9917666 100 3.29e-04 GCCAAAAATA TTACGAAA CACTCGACTC chr2R:7780378-7780498 65 3.70e-04 CCCAGACCGA TGATGTAA GTTTTCGTAT chr2L:3649248-3649368 9 3.70e-04 ACGAGTTG TTGTGCAA CTTCTAGAAT chr2R:19502665-19502785 78 3.70e-04 AGCAAAATGC TGATGTAA CAATAACTCG chrX:8460729-8460849 105 3.70e-04 GGCTGATAAC TGATGTAA CTAATTTC chr3R:12700132-12700252 92 3.70e-04 TTCGTGGCCA TGATGTAA TCATTGGAAA chr3R:5299711-5299831 46 3.70e-04 AACCTTTTTG TTGTGCAA TTGCTATCGT chr2L:13515774-13515894 52 3.70e-04 CGTATAGAAC TGATGTAA TCGTGTGAAT chr2R:14134700-14134820 77 4.15e-04 GAACAAACAA TTATACAA TTGGCGAACG chr2L:18953640-18953760 61 4.15e-04 CAGGGCGATG TTATACAA TGTATCGGAA chr2L:16255925-16256045 25 4.15e-04 CAATACCAAT TGACGCAA TTTGCTGATA chr2L:9619017-9619137 75 5.13e-04 TATCAACATC TTGTATAA CTAGGGGTAC chr3R:9597436-9597556 112 5.13e-04 ATTAGGATTG TTGTATAA C chr3R:9570795-9570915 89 5.13e-04 AGTAAAAGTA TTATGAAA TATTCCATGA chr3R:8353122-8353242 25 5.13e-04 AAATCGGGTA TTGTATAA TGTACGTCAG chr2R:20256785-20256905 73 5.13e-04 GGAGCCACTA TGGCGTAA TCGGCATCGG chr3R:9886178-9886298 107 5.13e-04 GAATTGCCGA TTATGAAA TTATGT chr2L:3894652-3894772 94 5.13e-04 TATTCGTCTT TTATGAAA CGCGTAAAGT chr3L:22839400-22839520 58 5.13e-04 ATTTACAGCC TTATGTCA CTTTTTGGTG chr2L:10456061-10456181 89 5.13e-04 TTGAGTGGGA TTATGAAA TTAAAATCCA chr2L:1748513-1748633 10 5.13e-04 CTGCGATTA TTGTATAA TAAAACCGGT chr3R:15508885-15509005 96 5.13e-04 TGAATCACTG TTATGTCA TCGATAAGGC chr3L:19703439-19703559 50 5.13e-04 AAGACGGCTG TTATGTCA TCCCGGACCG chr3L:5181133-5181253 64 5.69e-04 GTCAAACAGT TGACATAA TGTTCTCTGT chrX:8881833-8881953 33 5.69e-04 GTGGTTCGGT TTGCACAA ATTATGACAT chr2L:12028924-12029044 89 5.69e-04 CCAGGCCCAT TGACATAA TTTTCGCAAG chr2R:12263204-12263324 1 5.69e-04 . TGACATAA CCCAGTTGAA chr3L:11525935-11526055 58 5.69e-04 GACCCAATAT TTGCACAA GTGTTCCCAT chr3R:16292047-16292167 65 5.69e-04 GACTTTCTCA TGACATAA TTTCGCACAT chr3R:27927044-27927164 104 5.69e-04 CTGATTAAGA TTGCACAA TGGCTATTC chrX:9991151-9991271 55 5.69e-04 GGCCCAAAGA TGACATAA CATCTGGTGG chr3L:15140399-15140519 49 5.69e-04 CAGTTGAAGA TGACATAA TGCCCGGCTT chrX:6358320-6358440 23 5.69e-04 GTTCAAATGC TGACATAA CCGAGCCAAT chrX:9036253-9036373 5 6.02e-04 ATGA TTGCGAAA ATAATGAATA chr2L:20337913-20338033 69 6.02e-04 TTTGTTGGTA TTGCGAAA CGAGCGTTGA chr3L:16879158-16879278 39 6.02e-04 GTCGTCGAAG TTGCGTCA TTATCAGAGC chr3R:5621839-5621959 71 6.74e-04 CGCCATCGGG TTACATCA CTTTTGGGCA chr3R:21970109-21970229 23 6.74e-04 ACTGGCAGTA TTACAAAA ATGTATACTA chr2R:23718197-23718317 73 6.74e-04 GTAATGGCCA TTACAAAA CAGGCTAATC chr2L:5311033-5311153 93 6.74e-04 TTTAAAAATA TTACATCA CCATCATCGC chrX:2349621-2349741 37 6.74e-04 AGCGGTCCGA TTACAAAA GACGCTCGGT chr3R:21754041-21754161 50 7.75e-04 ACAGCAAATG TTATGCCA TCGTCTGGCA chrX:17624615-17624735 43 7.75e-04 ACTAACACAC TGGCGCAA GGCTATAAAG chr3R:7173029-7173149 93 9.66e-04 GAAACAAGAA TTATATCA TACAAGATGT chr3L:6036271-6036391 48 9.66e-04 TTATGATCGG TGACGAAA TCGGGGCCTT chrX:2193312-2193432 43 9.66e-04 ATCAATGGCC TGGCATAA TCGGCTATCA chr3L:11065963-11066083 93 9.66e-04 ATAATATGGT TTATATCA TTTTAGCTTA chr2L:300141-300261 29 9.66e-04 CCGATAATAA TGGCATAA CACTGTTAAC chr3L:11242034-11242154 59 1.06e-03 CCAAAAAAAG TTGCAAAA GAAGCAGACA chrX:17186593-17186713 67 1.06e-03 AGTTGCCGCA TTGCATCA CCGATAAGAG chr3L:11973016-11973136 49 1.16e-03 CTCAATTGTC TGATGAAA ACCAATTACG chr3R:9338871-9338991 112 1.16e-03 CACAGCGAAA TGGTATAA G chr3L:2490927-2491047 60 1.16e-03 CAGAGTGATG TGATGTCA TAATAAAACT chr3R:19910475-19910595 23 1.16e-03 CTTTCACTCT TGATGAAA GTATTTTACG chr3R:30451089-30451209 113 1.16e-03 ATGCGCTTGT TTGTGCCA chr2L:5520906-5521026 67 1.16e-03 AACTGTACGA TGATGAAA TAAGCACTCG chr3R:17008430-17008550 24 1.16e-03 TCTTAGGATC TGATGTCA TGCCAGTGAA chr2R:13335955-13336075 108 1.31e-03 AAAGCGAAAT TTATGACA CGAGA chr3L:16895553-16895673 60 1.37e-03 CTCCCCCCGA TGacatca cacacacaca chr3R:18395023-18395143 3 1.37e-03 TG TGACATCA TCGGGCCAAA chr2R:19200938-19201058 67 1.44e-03 CGATTGATGA TTACAACA CGAACAAATT chr3L:13952639-13952759 56 1.47e-03 ACTGCAAAAG TGGTGTCA CCGCATTTTG chr3L:18792129-18792249 89 1.55e-03 AAGAGGCGAG TTGTACCA GTATCTCTGC chr2R:18057265-18057385 111 1.55e-03 AAAATTCCTC TGATATCA TT chr3L:3086707-3086827 102 1.55e-03 CGTTAGTCAC TGATAAAA AGAAAGTTAA chr3R:20316682-20316802 79 1.66e-03 CAACCCAATG TTATAACA TTCATAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7153502-7153622 2.4e-05 30_[+1]_82 chr3L:12079585-12079705 2.4e-05 60_[+1]_52 chr2R:9036446-9036566 2.4e-05 36_[+1]_76 chrX:19293434-19293554 2.4e-05 31_[+1]_81 chr3L:3350547-3350667 2.4e-05 14_[+1]_98 chr2R:13997419-13997539 2.4e-05 24_[+1]_88 chrX:2295521-2295641 2.4e-05 14_[+1]_98 chr3L:15303772-15303892 2.4e-05 106_[+1]_6 chr3L:3776837-3776957 2.4e-05 25_[+1]_87 chr3L:21342729-21342849 2.4e-05 39_[+1]_73 chr2R:24749953-24750073 2.4e-05 20_[+1]_92 chr2L:1722409-1722529 5.4e-05 28_[+1]_84 chr3L:11239518-11239638 5.4e-05 79_[+1]_33 chr3L:19696228-19696348 5.4e-05 47_[+1]_65 chr2R:22589380-22589500 5.4e-05 47_[+1]_65 chr2R:14515638-14515758 5.4e-05 76_[+1]_36 chr3R:21015721-21015841 5.4e-05 26_[+1]_86 chr2R:22079096-22079216 5.4e-05 11_[+1]_101 chr3L:5553867-5553987 5.4e-05 73_[+1]_39 chr3R:12365569-12365689 7.2e-05 71_[+1]_41 chrX:13372654-13372774 7.2e-05 59_[+1]_53 chr3L:16984139-16984259 7.2e-05 32_[+1]_80 chrX:5884438-5884558 7.2e-05 33_[+1]_79 chr2R:7283922-7284042 7.2e-05 61_[+1]_51 chr2R:11187655-11187775 7.2e-05 68_[+1]_44 chr3R:9043751-9043871 7.2e-05 45_[+1]_67 chr2L:10502357-10502477 9.1e-05 75_[+1]_37 chrX:493049-493169 9.1e-05 40_[+1]_72 chr3R:30391250-30391370 9.1e-05 80_[+1]_32 chr2L:3165375-3165495 9.1e-05 68_[+1]_44 chrX:13980387-13980507 9.1e-05 26_[+1]_86 chr3R:9351537-9351657 9.1e-05 59_[+1]_53 chrX:7735352-7735472 0.00012 67_[+1]_45 chr3L:14006867-14006987 0.00012 60_[+1]_52 chrX:9103404-9103524 0.00012 36_[+1]_76 chr2R:9129577-9129697 0.00012 99_[+1]_13 chr3R:30272315-30272435 0.00012 9_[+1]_103 chr3L:17392550-17392670 0.00012 74_[+1]_38 chr3L:18952544-18952664 0.00012 46_[+1]_66 chr3L:6962267-6962387 0.00014 57_[+1]_55 chr2R:6522884-6523004 0.00014 107_[+1]_5 chr3R:14458580-14458700 0.00014 62_[+1]_50 chr3L:9056091-9056211 0.00014 104_[+1]_8 chr2L:5765281-5765401 0.00014 93_[+1]_19 chr3R:11245931-11246051 0.00014 76_[+1]_36 chr3L:6219688-6219808 0.00014 93_[+1]_19 chrX:11420124-11420244 0.00014 6_[+1]_106 chr2R:9028833-9028953 0.00014 [+1]_112 chr3L:3926525-3926645 0.00014 90_[+1]_22 chr3L:17624034-17624154 0.00014 26_[+1]_86 chr2L:10320487-10320607 0.00014 64_[+1]_48 chrX:11856414-11856534 0.00014 46_[+1]_66 chrX:10046893-10047013 0.00014 84_[+1]_28 chr2L:6780493-6780613 0.00014 63_[+1]_49 chr3L:17995925-17996045 0.00014 35_[+1]_77 chr2L:16843002-16843122 0.00014 74_[+1]_38 chr3L:14646048-14646168 0.00014 60_[+1]_52 chr2L:9707661-9707781 0.00017 88_[+1]_24 chr3L:11218984-11219104 0.00017 90_[+1]_22 chr2L:3372161-3372281 0.00024 51_[+1]_61 chr3R:6112853-6112973 0.00024 103_[+1]_9 chr3R:21745120-21745240 0.00024 66_[+1]_46 chr2R:19981047-19981167 0.00024 107_[+1]_5 chr3L:9766531-9766651 0.00024 5_[+1]_107 chr3R:23316978-23317098 0.00024 40_[+1]_72 chr3L:16383216-16383336 0.00024 61_[+1]_51 chrX:3721191-3721311 0.00024 102_[+1]_10 chr2R:19234672-19234792 0.00024 68_[+1]_44 chr2R:16223041-16223161 0.00024 63_[+1]_49 chr3L:4132727-4132847 0.00024 78_[+1]_34 chr2R:9136775-9136895 0.00026 75_[+1]_37 chr2L:2765253-2765373 0.00026 20_[+1]_92 chrX:2033190-2033310 0.00033 83_[+1]_29 chr3R:7188127-7188247 0.00033 56_[+1]_56 chr2R:16139613-16139733 0.00033 62_[+1]_50 chr3R:8668611-8668731 0.00033 41_[+1]_71 chr4:358204-358324 0.00033 55_[+1]_57 chr3R:24161123-24161243 0.00033 72_[+1]_40 chr2R:17781507-17781627 0.00033 53_[+1]_59 chrX:6706031-6706151 0.00033 31_[+1]_81 chr3R:30385689-30385809 0.00033 35_[+1]_77 chr2L:1742735-1742855 0.00033 58_[+1]_54 chr3R:26463701-26463821 0.00033 25_[+1]_87 chr2R:15555574-15555694 0.00033 95_[+1]_17 chr2R:21159494-21159614 0.00033 74_[+1]_38 chr3R:7175772-7175892 0.00033 65_[+1]_47 chr3L:1827947-1828067 0.00033 55_[+1]_57 chr2L:19989553-19989673 0.00033 75_[+1]_37 chr3R:9917546-9917666 0.00033 99_[+1]_13 chr2R:7780378-7780498 0.00037 64_[+1]_48 chr2L:3649248-3649368 0.00037 8_[+1]_104 chr2R:19502665-19502785 0.00037 77_[+1]_35 chrX:8460729-8460849 0.00037 104_[+1]_8 chr3R:12700132-12700252 0.00037 91_[+1]_21 chr3R:5299711-5299831 0.00037 45_[+1]_67 chr2L:13515774-13515894 0.00037 51_[+1]_61 chr2R:14134700-14134820 0.00041 76_[+1]_36 chr2L:18953640-18953760 0.00041 60_[+1]_52 chr2L:16255925-16256045 0.00041 24_[+1]_88 chr2L:9619017-9619137 0.00051 74_[+1]_38 chr3R:9597436-9597556 0.00051 111_[+1]_1 chr3R:9570795-9570915 0.00051 88_[+1]_24 chr3R:8353122-8353242 0.00051 24_[+1]_88 chr2R:20256785-20256905 0.00051 72_[+1]_40 chr3R:9886178-9886298 0.00051 106_[+1]_6 chr2L:3894652-3894772 0.00051 93_[+1]_19 chr3L:22839400-22839520 0.00051 57_[+1]_55 chr2L:10456061-10456181 0.00051 88_[+1]_24 chr2L:1748513-1748633 0.00051 9_[+1]_103 chr3R:15508885-15509005 0.00051 95_[+1]_17 chr3L:19703439-19703559 0.00051 49_[+1]_63 chr3L:5181133-5181253 0.00057 63_[+1]_49 chrX:8881833-8881953 0.00057 32_[+1]_80 chr2L:12028924-12029044 0.00057 88_[+1]_24 chr2R:12263204-12263324 0.00057 [+1]_112 chr3L:11525935-11526055 0.00057 57_[+1]_55 chr3R:16292047-16292167 0.00057 64_[+1]_48 chr3R:27927044-27927164 0.00057 103_[+1]_9 chrX:9991151-9991271 0.00057 54_[+1]_58 chr3L:15140399-15140519 0.00057 48_[+1]_64 chrX:6358320-6358440 0.00057 22_[+1]_90 chrX:9036253-9036373 0.0006 4_[+1]_108 chr2L:20337913-20338033 0.0006 68_[+1]_44 chr3L:16879158-16879278 0.0006 38_[+1]_74 chr3R:5621839-5621959 0.00067 70_[+1]_42 chr3R:21970109-21970229 0.00067 22_[+1]_90 chr2R:23718197-23718317 0.00067 72_[+1]_40 chr2L:5311033-5311153 0.00067 92_[+1]_20 chrX:2349621-2349741 0.00067 36_[+1]_76 chr3R:21754041-21754161 0.00077 49_[+1]_63 chrX:17624615-17624735 0.00077 42_[+1]_70 chr3R:7173029-7173149 0.00097 92_[+1]_20 chr3L:6036271-6036391 0.00097 47_[+1]_65 chrX:2193312-2193432 0.00097 42_[+1]_70 chr3L:11065963-11066083 0.00097 92_[+1]_20 chr2L:300141-300261 0.00097 28_[+1]_84 chr3L:11242034-11242154 0.0011 58_[+1]_54 chrX:17186593-17186713 0.0011 66_[+1]_46 chr3L:11973016-11973136 0.0012 48_[+1]_64 chr3R:9338871-9338991 0.0012 111_[+1]_1 chr3L:2490927-2491047 0.0012 59_[+1]_53 chr3R:19910475-19910595 0.0012 22_[+1]_90 chr3R:30451089-30451209 0.0012 112_[+1] chr2L:5520906-5521026 0.0012 66_[+1]_46 chr3R:17008430-17008550 0.0012 23_[+1]_89 chr2R:13335955-13336075 0.0013 107_[+1]_5 chr3L:16895553-16895673 0.0014 59_[+1]_53 chr3R:18395023-18395143 0.0014 2_[+1]_110 chr2R:19200938-19201058 0.0014 66_[+1]_46 chr3L:13952639-13952759 0.0015 55_[+1]_57 chr3L:18792129-18792249 0.0016 88_[+1]_24 chr2R:18057265-18057385 0.0016 110_[+1]_2 chr3L:3086707-3086827 0.0016 101_[+1]_11 chr3R:20316682-20316802 0.0017 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTAYRTAA width=8 seqs=154 chr2R:7153502-7153622 ( 31) TTACGTAA 1 chr3L:12079585-12079705 ( 61) TTACGTAA 1 chr2R:9036446-9036566 ( 37) TTACGTAA 1 chrX:19293434-19293554 ( 32) TTACGTAA 1 chr3L:3350547-3350667 ( 15) TTACGTAA 1 chr2R:13997419-13997539 ( 25) TTACGTAA 1 chrX:2295521-2295641 ( 15) TTACGTAA 1 chr3L:15303772-15303892 ( 107) TTACGTAA 1 chr3L:3776837-3776957 ( 26) TTACGTAA 1 chr3L:21342729-21342849 ( 40) TTACGTAA 1 chr2R:24749953-24750073 ( 21) TTACGTAA 1 chr2L:1722409-1722529 ( 29) TTATGTAA 1 chr3L:11239518-11239638 ( 80) TTATGTAA 1 chr3L:19696228-19696348 ( 48) TTATGTAA 1 chr2R:22589380-22589500 ( 48) TTATGTAA 1 chr2R:14515638-14515758 ( 77) TTATGTAA 1 chr3R:21015721-21015841 ( 27) TTATGTAA 1 chr2R:22079096-22079216 ( 12) TTATGTAA 1 chr3L:5553867-5553987 ( 74) TTATGTAA 1 chr3R:12365569-12365689 ( 72) TTACGCAA 1 chrX:13372654-13372774 ( 60) TTACGCAA 1 chr3L:16984139-16984259 ( 33) TTACGCAA 1 chrX:5884438-5884558 ( 34) TTACGCAA 1 chr2R:7283922-7284042 ( 62) TTACGCAA 1 chr2R:11187655-11187775 ( 69) TTACGCAA 1 chr3R:9043751-9043871 ( 46) TTACGCAA 1 chr2L:10502357-10502477 ( 76) TTGCGTAA 1 chrX:493049-493169 ( 41) TTGCGTAA 1 chr3R:30391250-30391370 ( 81) TTGCGTAA 1 chr2L:3165375-3165495 ( 69) TTGCGTAA 1 chrX:13980387-13980507 ( 27) TTGCGTAA 1 chr3R:9351537-9351657 ( 60) TTGCGTAA 1 chrX:7735352-7735472 ( 68) TTACATAA 1 chr3L:14006867-14006987 ( 61) TTACATAA 1 chrX:9103404-9103524 ( 37) TTACATAA 1 chr2R:9129577-9129697 ( 100) TTACATAA 1 chr3R:30272315-30272435 ( 10) TTACATAA 1 chr3L:17392550-17392670 ( 75) TTACATAA 1 chr3L:18952544-18952664 ( 47) TTACATAA 1 chr3L:6962267-6962387 ( 58) TTATGCAA 1 chr2R:6522884-6523004 ( 108) TTATGCAA 1 chr3R:14458580-14458700 ( 63) TTATGCAA 1 chr3L:9056091-9056211 ( 105) TTATGCAA 1 chr2L:5765281-5765401 ( 94) TTATGCAA 1 chr3R:11245931-11246051 ( 77) TTATGCAA 1 chr3L:6219688-6219808 ( 94) TTATGCAA 1 chrX:11420124-11420244 ( 7) TTATGCAA 1 chr2R:9028833-9028953 ( 1) TTATGCAA 1 chr3L:3926525-3926645 ( 91) TTATGCAA 1 chr3L:17624034-17624154 ( 27) TTATGCAA 1 chr2L:10320487-10320607 ( 65) TTATGCAA 1 chrX:11856414-11856534 ( 47) TTATGCAA 1 chrX:10046893-10047013 ( 85) TTATGCAA 1 chr2L:6780493-6780613 ( 64) TTATGCAA 1 chr3L:17995925-17996045 ( 36) TTATGCAA 1 chr2L:16843002-16843122 ( 75) TTATGCAA 1 chr3L:14646048-14646168 ( 61) TTATGCAA 1 chr2L:9707661-9707781 ( 89) TTGTGTAA 1 chr3L:11218984-11219104 ( 91) TTGTGTAA 1 chr2L:3372161-3372281 ( 52) TTGCGCAA 1 chr3R:6112853-6112973 ( 104) TTATATAA 1 chr3R:21745120-21745240 ( 67) TTGCGCAA 1 chr2R:19981047-19981167 ( 108) TTATATAA 1 chr3L:9766531-9766651 ( 6) TTGCGCAA 1 chr3R:23316978-23317098 ( 41) TTGCGCAA 1 chr3L:16383216-16383336 ( 62) TTATATAA 1 chrX:3721191-3721311 ( 103) TTATATAA 1 chr2R:19234672-19234792 ( 69) TTATATAA 1 chr2R:16223041-16223161 ( 64) TTATATAA 1 chr3L:4132727-4132847 ( 79) TGACGTAA 1 chr2R:9136775-9136895 ( 76) TTACACAA 1 chr2L:2765253-2765373 ( 21) TTACACAA 1 chrX:2033190-2033310 ( 84) TTACGAAA 1 chr3R:7188127-7188247 ( 57) TTACGTCA 1 chr2R:16139613-16139733 ( 63) TTGCATAA 1 chr3R:8668611-8668731 ( 42) TTGCATAA 1 chr4:358204-358324 ( 56) TTACGTCA 1 chr3R:24161123-24161243 ( 73) TTGCATAA 1 chr2R:17781507-17781627 ( 54) TTACGTCA 1 chrX:6706031-6706151 ( 32) TTGCATAA 1 chr3R:30385689-30385809 ( 36) TTGCATAA 1 chr2L:1742735-1742855 ( 59) TTGCATAA 1 chr3R:26463701-26463821 ( 26) TTACGAAA 1 chr2R:15555574-15555694 ( 96) TTACGAAA 1 chr2R:21159494-21159614 ( 75) TTGCATAA 1 chr3R:7175772-7175892 ( 66) TTGCATAA 1 chr3L:1827947-1828067 ( 56) TTGCATAA 1 chr2L:19989553-19989673 ( 76) TTGCATAA 1 chr3R:9917546-9917666 ( 100) TTACGAAA 1 chr2R:7780378-7780498 ( 65) TGATGTAA 1 chr2L:3649248-3649368 ( 9) TTGTGCAA 1 chr2R:19502665-19502785 ( 78) TGATGTAA 1 chrX:8460729-8460849 ( 105) TGATGTAA 1 chr3R:12700132-12700252 ( 92) TGATGTAA 1 chr3R:5299711-5299831 ( 46) TTGTGCAA 1 chr2L:13515774-13515894 ( 52) TGATGTAA 1 chr2R:14134700-14134820 ( 77) TTATACAA 1 chr2L:18953640-18953760 ( 61) TTATACAA 1 chr2L:16255925-16256045 ( 25) TGACGCAA 1 chr2L:9619017-9619137 ( 75) TTGTATAA 1 chr3R:9597436-9597556 ( 112) TTGTATAA 1 chr3R:9570795-9570915 ( 89) TTATGAAA 1 chr3R:8353122-8353242 ( 25) TTGTATAA 1 chr2R:20256785-20256905 ( 73) TGGCGTAA 1 chr3R:9886178-9886298 ( 107) TTATGAAA 1 chr2L:3894652-3894772 ( 94) TTATGAAA 1 chr3L:22839400-22839520 ( 58) TTATGTCA 1 chr2L:10456061-10456181 ( 89) TTATGAAA 1 chr2L:1748513-1748633 ( 10) TTGTATAA 1 chr3R:15508885-15509005 ( 96) TTATGTCA 1 chr3L:19703439-19703559 ( 50) TTATGTCA 1 chr3L:5181133-5181253 ( 64) TGACATAA 1 chrX:8881833-8881953 ( 33) TTGCACAA 1 chr2L:12028924-12029044 ( 89) TGACATAA 1 chr2R:12263204-12263324 ( 1) TGACATAA 1 chr3L:11525935-11526055 ( 58) TTGCACAA 1 chr3R:16292047-16292167 ( 65) TGACATAA 1 chr3R:27927044-27927164 ( 104) TTGCACAA 1 chrX:9991151-9991271 ( 55) TGACATAA 1 chr3L:15140399-15140519 ( 49) TGACATAA 1 chrX:6358320-6358440 ( 23) TGACATAA 1 chrX:9036253-9036373 ( 5) TTGCGAAA 1 chr2L:20337913-20338033 ( 69) TTGCGAAA 1 chr3L:16879158-16879278 ( 39) TTGCGTCA 1 chr3R:5621839-5621959 ( 71) TTACATCA 1 chr3R:21970109-21970229 ( 23) TTACAAAA 1 chr2R:23718197-23718317 ( 73) TTACAAAA 1 chr2L:5311033-5311153 ( 93) TTACATCA 1 chrX:2349621-2349741 ( 37) TTACAAAA 1 chr3R:21754041-21754161 ( 50) TTATGCCA 1 chrX:17624615-17624735 ( 43) TGGCGCAA 1 chr3R:7173029-7173149 ( 93) TTATATCA 1 chr3L:6036271-6036391 ( 48) TGACGAAA 1 chrX:2193312-2193432 ( 43) TGGCATAA 1 chr3L:11065963-11066083 ( 93) TTATATCA 1 chr2L:300141-300261 ( 29) TGGCATAA 1 chr3L:11242034-11242154 ( 59) TTGCAAAA 1 chrX:17186593-17186713 ( 67) TTGCATCA 1 chr3L:11973016-11973136 ( 49) TGATGAAA 1 chr3R:9338871-9338991 ( 112) TGGTATAA 1 chr3L:2490927-2491047 ( 60) TGATGTCA 1 chr3R:19910475-19910595 ( 23) TGATGAAA 1 chr3R:30451089-30451209 ( 113) TTGTGCCA 1 chr2L:5520906-5521026 ( 67) TGATGAAA 1 chr3R:17008430-17008550 ( 24) TGATGTCA 1 chr2R:13335955-13336075 ( 108) TTATGACA 1 chr3L:16895553-16895673 ( 60) TGACATCA 1 chr3R:18395023-18395143 ( 3) TGACATCA 1 chr2R:19200938-19201058 ( 67) TTACAACA 1 chr3L:13952639-13952759 ( 56) TGGTGTCA 1 chr3L:18792129-18792249 ( 89) TTGTACCA 1 chr2R:18057265-18057385 ( 111) TGATATCA 1 chr3L:3086707-3086827 ( 102) TGATAAAA 1 chr3R:20316682-20316802 ( 79) TTATAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.96546 E= 3.2e-045 -1391 -1391 -1391 182 -1391 -1391 -15 151 135 -1391 40 -1391 -1391 130 -1391 69 48 -1391 149 -1391 -97 34 -1391 103 160 -50 -1391 -1391 184 -1391 -1391 -1391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 154 E= 3.2e-045 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.194805 0.805195 0.714286 0.000000 0.285714 0.000000 0.000000 0.545455 0.000000 0.454545 0.389610 0.000000 0.610390 0.000000 0.142857 0.279221 0.000000 0.577922 0.844156 0.155844 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAYRTAA MEME-1 regular expression -------------------------------------------------------------------------------- TT[AG][CT][GA][TC]AA -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTTATCD MEME-2 width = 8 sites = 68 llr = 528 E-value = 2.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2::a::4 pos.-specific C 36::::a: probability G 22:::::4 matrix T 5:aa:a:2 bits 2.2 * 2.0 * 1.8 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.2 bits) 0.9 ***** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus CA G sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1693071-1693191 82 1.90e-05 ACTGCGTTTT TCTTATCG CCGCTTATCA chr3R:23316978-23317098 71 1.90e-05 TCTGAAGAAA TCTTATCG CAATTCCCAG chr2L:9513898-9514018 40 1.90e-05 CGAATCAATA TCTTATCG AAGGAAGTGC chrX:5884438-5884558 54 1.90e-05 GCAGAGGCAA TCTTATCG AGGAAACGGA chr2L:13515774-13515894 6 1.90e-05 ATGCA TCTTATCG GCGACTTAAA chrX:2349621-2349741 54 1.90e-05 AGACGCTCGG TCTTATCG TTTTTTTTTT chr3R:30297817-30297937 47 1.90e-05 GGGTTTACTT TCTTATCG CCGGCATACG chrX:16702053-16702173 47 1.90e-05 GAAAATCTAA TCTTATCG CCTTATGGCA chr3L:13952639-13952759 91 1.90e-05 TCTGAATAGC TCTTATCG TTGGAAGTGT chrX:6062285-6062405 88 1.90e-05 GGCGATGGCA TCTTATCG GGCAAATCGA chrX:1346446-1346566 11 1.90e-05 CGCTATCTTA TCTTATCG AGCTGATGAA chr3L:4132727-4132847 40 1.90e-05 GGGAACTGGT TCTTATCG CCTTATCGGT chr2L:9619017-9619137 62 4.34e-05 ATCGCCCCAA TCTTATCA ACATCTTGTA chr2R:22589380-22589500 61 4.34e-05 TGTAAACCTC TCTTATCA GCCAAGTGGC chr3R:20316682-20316802 63 4.34e-05 TGCAATCATA TCTTATCA ACCCAATGTT chr2R:23552225-23552345 21 4.34e-05 GATTACCTTA TCTTATCA TGCTGCTTCC chr3R:19910475-19910595 56 4.34e-05 CAATTGCGTT TCTTATCA GCCTTTGTAG chr2L:13576461-13576581 43 4.34e-05 TTTGTGGATT TCTTATCA GCTCAGCGCT chr2L:15612113-15612233 106 5.82e-05 AAATTCAAAG CCTTATCG CAATACA chr3L:2490927-2491047 82 5.82e-05 AAAACTTTGC CCTTATCG ACAATATAAA chr2R:8453476-8453596 98 5.82e-05 TGCAATTGTG CCTTATCG ACTGCTCAAT chr2L:2765253-2765373 43 5.82e-05 TTTTGGAGCG CCTTATCG GATTCGGGAG chr2R:16127359-16127479 40 7.72e-05 CTTTTTTGGG CCTTATCA AGAAGTGGCT chr3R:11245931-11246051 37 7.72e-05 TTTTAAATGG CCTTATCA GGCGAACATT chr2R:24130683-24130803 37 7.72e-05 ATTCCCGAGT CCTTATCA GTTTCCTCCC chr3R:12379396-12379516 42 7.72e-05 GCACTTGTTC CCTTATCA AAATATTTCA chr2R:9427334-9427454 110 1.02e-04 ATTTCAACGA TCTTATCT AAG chr2R:20256785-20256905 19 1.02e-04 ACAGGGGGAC TCTTATCT GGCAGCTGGG chr2R:12166404-12166524 8 1.02e-04 AAATCTC TCTTATCT GCGAAAGGAA chr2L:20337913-20338033 97 1.02e-04 TTAAACGCCA TCTTATCT ATTTCTACTT chr3L:11065963-11066083 42 1.02e-04 GGGTAAACGT TCTTATCT CCAGTGTTGA chr3L:3054236-3054356 66 1.02e-04 CTAATCCCCA TCTTATCT TTGACAGCCC chr2R:10883401-10883521 81 1.16e-04 TACAGTGTGT GCTTATCG CGATTCCCCG chr2L:10502357-10502477 94 1.54e-04 CCAAGAGTTC GCTTATCA CCTTGCCAGT chr2R:19502665-19502785 95 1.54e-04 ACAATAACTC GCTTATCA GTTTCGGTTG chr3L:3926525-3926645 13 1.54e-04 GGATTGTTGT TGTTATCG CAGGCAACGG chr3R:9351537-9351657 44 1.54e-04 ATTTCTATTC TGTTATCG CTTTCGACTT chr2R:10852905-10853025 27 1.54e-04 CAATGGCTTG GCTTATCA GTCTTAACCA chr3R:15508885-15509005 16 1.54e-04 CAAGTGATGT GCTTATCA GTGGTGACGA chr2R:24335710-24335830 77 1.54e-04 ACTTTTCTTC GCTTATCA GTCAAGCTAT chr2L:6960328-6960448 58 1.97e-04 CATTATCAGC TGTTATCA GCGAAAAAAG chr2L:8946823-8946943 42 1.97e-04 TATTATTATT TGTTATCA CCAACGTCCA chr3L:5753761-5753881 96 1.97e-04 AATGTTTGAT TGTTATCA GACCCCTGAT chrX:8881833-8881953 62 2.21e-04 ATGCCACATT TATTATCG CCACTGCGTG chr3L:9766531-9766651 25 2.21e-04 ATTCGGTACT TATTATCG TACGAGAACA chr2R:19981047-19981167 86 2.66e-04 GCGAACAGAG TATTATCA ATCAACTTGC chr3L:1305499-1305619 57 2.66e-04 TTTTTATTGC TATTATCA AATACAATTG chr3R:8353122-8353242 91 2.85e-04 TTGTTGTGGT CGTTATCA ATTAACATGC chrX:2193312-2193432 29 2.85e-04 CCAGCGAGGG CGTTATCA ATGGCCTGGC chr3R:22022788-22022908 59 2.85e-04 TCGATTTTCA CGTTATCA AATAGCTAGA chr2R:22079096-22079216 30 2.85e-04 ATTAATCAAT CGTTATCA GTACCCAAGG chr3R:26463701-26463821 53 3.04e-04 ACAGTTCATT GCTTATCT GTCAGTGACC chr3L:15303772-15303892 31 3.04e-04 TGTTTAATCG GCTTATCT GGTATCAGCA chr3R:11637729-11637849 34 3.47e-04 ATTTGGACAA TGTTATCT GCATTAACTA chr3L:22839400-22839520 89 3.47e-04 TACACTTTTT CATTATCG CGCAGCAGCA chr2L:8399986-8400106 89 3.47e-04 TGGTCAGTTT CATTATCG TTTAATCATT chr3R:18395023-18395143 52 3.47e-04 CAGCCTCGCA CATTATCG AACTTTAATG chr2L:8033238-8033358 6 3.47e-04 GATAA CATTATCG TAATTTCGAA chr3R:21970109-21970229 1 3.71e-04 . CATTATCA ACAAACTGGC chr3R:22782167-22782287 79 4.35e-04 GTATCTAATC GGTTATCA GGTTGTCAGT chrX:2302952-2303072 13 4.35e-04 GCAAAATATG TATTATCT AAGCGATAAG chr2R:17781507-17781627 6 4.35e-04 CAGGT TATTATCT CGTTGAAAAA chr2L:10320487-10320607 21 4.35e-04 GAGTTCTGCT GGTTATCA TGTTTTTTAT chr2L:1631539-1631659 85 4.35e-04 TCGCACCGAG TATTATCT TTTCCAGCGC chr3L:11973016-11973136 21 4.54e-04 TCGCGAAGTC CGTTATCT TTAATAGGAA chr2L:5520906-5521026 6 4.96e-04 CATTC GATTATCA AGTTCAAAAC chr3L:10223542-10223662 76 5.20e-04 ACTGATTGGA CATTATCT CAATCGCAGG chr2R:24677712-24677832 102 5.39e-04 CGACTCTTTC GGTTATCT TCCATCGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1693071-1693191 1.9e-05 81_[+2]_31 chr3R:23316978-23317098 1.9e-05 70_[+2]_42 chr2L:9513898-9514018 1.9e-05 39_[+2]_73 chrX:5884438-5884558 1.9e-05 53_[+2]_59 chr2L:13515774-13515894 1.9e-05 5_[+2]_107 chrX:2349621-2349741 1.9e-05 53_[+2]_59 chr3R:30297817-30297937 1.9e-05 46_[+2]_66 chrX:16702053-16702173 1.9e-05 46_[+2]_66 chr3L:13952639-13952759 1.9e-05 90_[+2]_22 chrX:6062285-6062405 1.9e-05 87_[+2]_25 chrX:1346446-1346566 1.9e-05 10_[+2]_102 chr3L:4132727-4132847 1.9e-05 39_[+2]_73 chr2L:9619017-9619137 4.3e-05 61_[+2]_51 chr2R:22589380-22589500 4.3e-05 60_[+2]_52 chr3R:20316682-20316802 4.3e-05 62_[+2]_50 chr2R:23552225-23552345 4.3e-05 20_[+2]_92 chr3R:19910475-19910595 4.3e-05 55_[+2]_57 chr2L:13576461-13576581 4.3e-05 42_[+2]_70 chr2L:15612113-15612233 5.8e-05 105_[+2]_7 chr3L:2490927-2491047 5.8e-05 81_[+2]_31 chr2R:8453476-8453596 5.8e-05 97_[+2]_15 chr2L:2765253-2765373 5.8e-05 42_[+2]_70 chr2R:16127359-16127479 7.7e-05 39_[+2]_73 chr3R:11245931-11246051 7.7e-05 36_[+2]_76 chr2R:24130683-24130803 7.7e-05 36_[+2]_76 chr3R:12379396-12379516 7.7e-05 41_[+2]_71 chr2R:9427334-9427454 0.0001 109_[+2]_3 chr2R:20256785-20256905 0.0001 18_[+2]_94 chr2R:12166404-12166524 0.0001 7_[+2]_105 chr2L:20337913-20338033 0.0001 96_[+2]_16 chr3L:11065963-11066083 0.0001 41_[+2]_71 chr3L:3054236-3054356 0.0001 65_[+2]_47 chr2R:10883401-10883521 0.00012 80_[+2]_32 chr2L:10502357-10502477 0.00015 93_[+2]_19 chr2R:19502665-19502785 0.00015 94_[+2]_18 chr3L:3926525-3926645 0.00015 12_[+2]_100 chr3R:9351537-9351657 0.00015 43_[+2]_69 chr2R:10852905-10853025 0.00015 26_[+2]_86 chr3R:15508885-15509005 0.00015 15_[+2]_97 chr2R:24335710-24335830 0.00015 76_[+2]_36 chr2L:6960328-6960448 0.0002 57_[+2]_55 chr2L:8946823-8946943 0.0002 41_[+2]_71 chr3L:5753761-5753881 0.0002 95_[+2]_17 chrX:8881833-8881953 0.00022 61_[+2]_51 chr3L:9766531-9766651 0.00022 24_[+2]_88 chr2R:19981047-19981167 0.00027 85_[+2]_27 chr3L:1305499-1305619 0.00027 56_[+2]_56 chr3R:8353122-8353242 0.00029 90_[+2]_22 chrX:2193312-2193432 0.00029 28_[+2]_84 chr3R:22022788-22022908 0.00029 58_[+2]_54 chr2R:22079096-22079216 0.00029 29_[+2]_83 chr3R:26463701-26463821 0.0003 52_[+2]_60 chr3L:15303772-15303892 0.0003 30_[+2]_82 chr3R:11637729-11637849 0.00035 33_[+2]_79 chr3L:22839400-22839520 0.00035 88_[+2]_24 chr2L:8399986-8400106 0.00035 88_[+2]_24 chr3R:18395023-18395143 0.00035 51_[+2]_61 chr2L:8033238-8033358 0.00035 5_[+2]_107 chr3R:21970109-21970229 0.00037 [+2]_112 chr3R:22782167-22782287 0.00043 78_[+2]_34 chrX:2302952-2303072 0.00043 12_[+2]_100 chr2R:17781507-17781627 0.00043 5_[+2]_107 chr2L:10320487-10320607 0.00043 20_[+2]_92 chr2L:1631539-1631659 0.00043 84_[+2]_28 chr3L:11973016-11973136 0.00045 20_[+2]_92 chr2L:5520906-5521026 0.0005 5_[+2]_107 chr3L:10223542-10223662 0.00052 75_[+2]_37 chr2R:24677712-24677832 0.00054 101_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTTATCD width=8 seqs=68 chr2L:1693071-1693191 ( 82) TCTTATCG 1 chr3R:23316978-23317098 ( 71) TCTTATCG 1 chr2L:9513898-9514018 ( 40) TCTTATCG 1 chrX:5884438-5884558 ( 54) TCTTATCG 1 chr2L:13515774-13515894 ( 6) TCTTATCG 1 chrX:2349621-2349741 ( 54) TCTTATCG 1 chr3R:30297817-30297937 ( 47) TCTTATCG 1 chrX:16702053-16702173 ( 47) TCTTATCG 1 chr3L:13952639-13952759 ( 91) TCTTATCG 1 chrX:6062285-6062405 ( 88) TCTTATCG 1 chrX:1346446-1346566 ( 11) TCTTATCG 1 chr3L:4132727-4132847 ( 40) TCTTATCG 1 chr2L:9619017-9619137 ( 62) TCTTATCA 1 chr2R:22589380-22589500 ( 61) TCTTATCA 1 chr3R:20316682-20316802 ( 63) TCTTATCA 1 chr2R:23552225-23552345 ( 21) TCTTATCA 1 chr3R:19910475-19910595 ( 56) TCTTATCA 1 chr2L:13576461-13576581 ( 43) TCTTATCA 1 chr2L:15612113-15612233 ( 106) CCTTATCG 1 chr3L:2490927-2491047 ( 82) CCTTATCG 1 chr2R:8453476-8453596 ( 98) CCTTATCG 1 chr2L:2765253-2765373 ( 43) CCTTATCG 1 chr2R:16127359-16127479 ( 40) CCTTATCA 1 chr3R:11245931-11246051 ( 37) CCTTATCA 1 chr2R:24130683-24130803 ( 37) CCTTATCA 1 chr3R:12379396-12379516 ( 42) CCTTATCA 1 chr2R:9427334-9427454 ( 110) TCTTATCT 1 chr2R:20256785-20256905 ( 19) TCTTATCT 1 chr2R:12166404-12166524 ( 8) TCTTATCT 1 chr2L:20337913-20338033 ( 97) TCTTATCT 1 chr3L:11065963-11066083 ( 42) TCTTATCT 1 chr3L:3054236-3054356 ( 66) TCTTATCT 1 chr2R:10883401-10883521 ( 81) GCTTATCG 1 chr2L:10502357-10502477 ( 94) GCTTATCA 1 chr2R:19502665-19502785 ( 95) GCTTATCA 1 chr3L:3926525-3926645 ( 13) TGTTATCG 1 chr3R:9351537-9351657 ( 44) TGTTATCG 1 chr2R:10852905-10853025 ( 27) GCTTATCA 1 chr3R:15508885-15509005 ( 16) GCTTATCA 1 chr2R:24335710-24335830 ( 77) GCTTATCA 1 chr2L:6960328-6960448 ( 58) TGTTATCA 1 chr2L:8946823-8946943 ( 42) TGTTATCA 1 chr3L:5753761-5753881 ( 96) TGTTATCA 1 chrX:8881833-8881953 ( 62) TATTATCG 1 chr3L:9766531-9766651 ( 25) TATTATCG 1 chr2R:19981047-19981167 ( 86) TATTATCA 1 chr3L:1305499-1305619 ( 57) TATTATCA 1 chr3R:8353122-8353242 ( 91) CGTTATCA 1 chrX:2193312-2193432 ( 29) CGTTATCA 1 chr3R:22022788-22022908 ( 59) CGTTATCA 1 chr2R:22079096-22079216 ( 30) CGTTATCA 1 chr3R:26463701-26463821 ( 53) GCTTATCT 1 chr3L:15303772-15303892 ( 31) GCTTATCT 1 chr3R:11637729-11637849 ( 34) TGTTATCT 1 chr3L:22839400-22839520 ( 89) CATTATCG 1 chr2L:8399986-8400106 ( 89) CATTATCG 1 chr3R:18395023-18395143 ( 52) CATTATCG 1 chr2L:8033238-8033358 ( 6) CATTATCG 1 chr3R:21970109-21970229 ( 1) CATTATCA 1 chr3R:22782167-22782287 ( 79) GGTTATCA 1 chrX:2302952-2303072 ( 13) TATTATCT 1 chr2R:17781507-17781627 ( 6) TATTATCT 1 chr2L:10320487-10320607 ( 21) GGTTATCA 1 chr2L:1631539-1631659 ( 85) TATTATCT 1 chr3L:11973016-11973136 ( 21) CGTTATCT 1 chr2L:5520906-5521026 ( 6) GATTATCA 1 chr3L:10223542-10223662 ( 76) CATTATCT 1 chr2R:24677712-24677832 ( 102) GGTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49118 E= 2.3e-008 -1273 34 -30 94 -44 141 -7 -1273 -1273 -1273 -1273 182 -1273 -1273 -1273 182 184 -1273 -1273 -1273 -1273 -1273 -1273 182 -1273 218 -1273 -1273 56 -1273 76 -36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.3e-008 0.000000 0.279412 0.176471 0.544118 0.205882 0.588235 0.205882 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.411765 0.000000 0.367647 0.220588 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTTATCD MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CAG]TTATC[AGT] -------------------------------------------------------------------------------- Time 13.46 secs. ******************************************************************************** ******************************************************************************** MOTIF HGATAAGV MEME-3 width = 8 sites = 33 llr = 290 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:a:aa:4 pos.-specific C 4::::::4 probability G :a::::a2 matrix T 4::a:::: bits 2.2 * * 2.0 * * 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.7 bits) 0.9 ****** 0.7 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGATAAGC consensus T A sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2302952-2303072 24 1.41e-05 ATTATCTAAG CGATAAGC GGAGTGGTGT chr3L:18792129-18792249 65 1.41e-05 GTATACGCCG CGATAAGC AAAGATAAGA chr3R:5261387-5261507 55 1.41e-05 AAGTCAATTA CGATAAGC GGTTACGTGC chrX:6062285-6062405 103 1.41e-05 TCGGGCAAAT CGATAAGC GCCGCGACAG chr3L:5181133-5181253 98 3.22e-05 TTCCACAAAC TGATAAGC AACAATTTTC chrX:2142717-2142837 82 3.22e-05 TGTGATAACG TGATAAGC ATCCTAGTGC chr3L:1739771-1739891 81 3.22e-05 GATATCGCTG TGATAAGC GAGCTATTCA chr2R:6779206-6779326 61 3.22e-05 AAAAAATCTA TGATAAGC GGGCGAACCA chr3R:15298160-15298280 88 5.01e-05 TAACTGCCGG CGATAAGA GGAGGAGGCC chrX:9036253-9036373 69 5.01e-05 ATTGCAATTT CGATAAGA CCATTTCGCA chr2R:11097655-11097775 7 5.01e-05 AGCAGA CGATAAGA TTAGTACGAG chrX:17186593-17186713 76 5.01e-05 ATTGCATCAC CGATAAGA GCGTAGACTA chr2R:24335710-24335830 29 5.01e-05 CGCCGTTGCA CGATAAGA GGGTATTCCG chr3L:3350547-3350667 100 6.79e-05 GGCAGTCGAC AGATAAGC TCGCAGAACC chr3R:10870736-10870856 90 6.79e-05 GGGGCAGTGC AGATAAGC AAATCCAAGC chr2R:12263204-12263324 48 6.79e-05 GAGTACGCCA AGATAAGC TGGGCAAATT chr2L:7678381-7678501 82 6.79e-05 GCTCATGGTT AGATAAGC GGCGATTTGT chr3R:12450776-12450896 43 6.79e-05 GTGCATGCAT AGATAAGC GTCCATGGGG chr3R:13783506-13783626 12 6.79e-05 CTTCGAGTTA AGATAAGC CCAGCGCCAG chr3L:16867356-16867476 109 9.08e-05 GAAATTTCAT TGATAAGA TATC chr3R:12700132-12700252 74 9.08e-05 CCCCGCAACG TGATAAGA TTCGTGGCCA chrX:3721191-3721311 71 9.08e-05 ACAAAAACGT TGATAAGA TGAAATGCCT chr3R:30385689-30385809 85 9.08e-05 CACAAGTGGT TGATAAGA AAGAACAGAC chr2L:8399986-8400106 63 9.08e-05 TAACAATCCG TGATAAGA CTTTGTTGTG chr2L:3649248-3649368 33 1.05e-04 GAATTACCGC CGATAAGG AAACCCTTTC chr3R:12648884-12649004 44 1.05e-04 TCAAATTGTG CGATAAGG AGAAGATATC chr3R:15508885-15509005 105 1.05e-04 GTTATGTCAT CGATAAGG CTTATAGC chr3L:1325434-1325554 91 1.45e-04 AATATGGCAT TGATAAGG TGAATTGCAC chr3R:21015721-21015841 52 1.45e-04 AAAAAGCGCC AGATAAGA CCAACCGCCG chrX:2349621-2349741 79 1.45e-04 TTTTTTGGGC TGATAAGG ATGATGGAGG chr3R:9043751-9043871 7 1.45e-04 CGGGAA TGATAAGG GCTGTCGGTA chr3R:9917546-9917666 78 1.45e-04 tttttttttG AGATAAGA GCGGGCCAAA chr3L:9766531-9766651 49 1.62e-04 AACACCCTTA AGATAAGG CATCCCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2302952-2303072 1.4e-05 23_[+3]_89 chr3L:18792129-18792249 1.4e-05 64_[+3]_48 chr3R:5261387-5261507 1.4e-05 54_[+3]_58 chrX:6062285-6062405 1.4e-05 102_[+3]_10 chr3L:5181133-5181253 3.2e-05 97_[+3]_15 chrX:2142717-2142837 3.2e-05 81_[+3]_31 chr3L:1739771-1739891 3.2e-05 80_[+3]_32 chr2R:6779206-6779326 3.2e-05 60_[+3]_52 chr3R:15298160-15298280 5e-05 87_[+3]_25 chrX:9036253-9036373 5e-05 68_[+3]_44 chr2R:11097655-11097775 5e-05 6_[+3]_106 chrX:17186593-17186713 5e-05 75_[+3]_37 chr2R:24335710-24335830 5e-05 28_[+3]_84 chr3L:3350547-3350667 6.8e-05 99_[+3]_13 chr3R:10870736-10870856 6.8e-05 89_[+3]_23 chr2R:12263204-12263324 6.8e-05 47_[+3]_65 chr2L:7678381-7678501 6.8e-05 81_[+3]_31 chr3R:12450776-12450896 6.8e-05 42_[+3]_70 chr3R:13783506-13783626 6.8e-05 11_[+3]_101 chr3L:16867356-16867476 9.1e-05 108_[+3]_4 chr3R:12700132-12700252 9.1e-05 73_[+3]_39 chrX:3721191-3721311 9.1e-05 70_[+3]_42 chr3R:30385689-30385809 9.1e-05 84_[+3]_28 chr2L:8399986-8400106 9.1e-05 62_[+3]_50 chr2L:3649248-3649368 0.0001 32_[+3]_80 chr3R:12648884-12649004 0.0001 43_[+3]_69 chr3R:15508885-15509005 0.0001 104_[+3]_8 chr3L:1325434-1325554 0.00014 90_[+3]_22 chr3R:21015721-21015841 0.00014 51_[+3]_61 chrX:2349621-2349741 0.00014 78_[+3]_34 chr3R:9043751-9043871 0.00014 6_[+3]_106 chr3R:9917546-9917666 0.00014 77_[+3]_35 chr3L:9766531-9766651 0.00016 48_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGATAAGV width=8 seqs=33 chrX:2302952-2303072 ( 24) CGATAAGC 1 chr3L:18792129-18792249 ( 65) CGATAAGC 1 chr3R:5261387-5261507 ( 55) CGATAAGC 1 chrX:6062285-6062405 ( 103) CGATAAGC 1 chr3L:5181133-5181253 ( 98) TGATAAGC 1 chrX:2142717-2142837 ( 82) TGATAAGC 1 chr3L:1739771-1739891 ( 81) TGATAAGC 1 chr2R:6779206-6779326 ( 61) TGATAAGC 1 chr3R:15298160-15298280 ( 88) CGATAAGA 1 chrX:9036253-9036373 ( 69) CGATAAGA 1 chr2R:11097655-11097775 ( 7) CGATAAGA 1 chrX:17186593-17186713 ( 76) CGATAAGA 1 chr2R:24335710-24335830 ( 29) CGATAAGA 1 chr3L:3350547-3350667 ( 100) AGATAAGC 1 chr3R:10870736-10870856 ( 90) AGATAAGC 1 chr2R:12263204-12263324 ( 48) AGATAAGC 1 chr2L:7678381-7678501 ( 82) AGATAAGC 1 chr3R:12450776-12450896 ( 43) AGATAAGC 1 chr3R:13783506-13783626 ( 12) AGATAAGC 1 chr3L:16867356-16867476 ( 109) TGATAAGA 1 chr3R:12700132-12700252 ( 74) TGATAAGA 1 chrX:3721191-3721311 ( 71) TGATAAGA 1 chr3R:30385689-30385809 ( 85) TGATAAGA 1 chr2L:8399986-8400106 ( 63) TGATAAGA 1 chr2L:3649248-3649368 ( 33) CGATAAGG 1 chr3R:12648884-12649004 ( 44) CGATAAGG 1 chr3R:15508885-15509005 ( 105) CGATAAGG 1 chr3L:1325434-1325554 ( 91) TGATAAGG 1 chr3R:21015721-21015841 ( 52) AGATAAGA 1 chrX:2349621-2349741 ( 79) TGATAAGG 1 chr3R:9043751-9043871 ( 7) TGATAAGG 1 chr3R:9917546-9917666 ( 78) AGATAAGA 1 chr3L:9766531-9766651 ( 49) AGATAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.77533 E= 2.0e-001 -3 72 -1169 36 -1169 -1169 221 -1169 184 -1169 -1169 -1169 -1169 -1169 -1169 182 184 -1169 -1169 -1169 184 -1169 -1169 -1169 -1169 -1169 221 -1169 38 94 -3 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.0e-001 0.272727 0.363636 0.000000 0.363636 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.424242 0.212121 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 regular expression -------------------------------------------------------------------------------- [CTA]GATAAG[CAG] -------------------------------------------------------------------------------- Time 19.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGGG MEME-4 width = 8 sites = 4 llr = 48 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::: probability G aa:aaaaa matrix T :::::::: bits 2.2 ** ***** 2.0 ** ***** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15298160-15298280 58 6.32e-06 GGGACCGAAA GGAGGGGG TAAGGTTTTG chr3R:30272315-30272435 49 6.32e-06 GGATCCCGGG GGAGGGGG AAGAAGATGA chr2L:2765253-2765373 57 6.32e-06 ATCGGATTCG GGAGGGGG AATGTCGAGG chrX:2349621-2349741 92 6.32e-06 TAAGGATGAT GGAGGGGG AGGTGGGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15298160-15298280 6.3e-06 57_[+4]_55 chr3R:30272315-30272435 6.3e-06 48_[+4]_64 chr2L:2765253-2765373 6.3e-06 56_[+4]_56 chrX:2349621-2349741 6.3e-06 91_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGGG width=8 seqs=4 chr3R:15298160-15298280 ( 58) GGAGGGGG 1 chr3R:30272315-30272435 ( 49) GGAGGGGG 1 chr2L:2765253-2765373 ( 57) GGAGGGGG 1 chrX:2349621-2349741 ( 92) GGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.1e+004 -865 -865 220 -865 -865 -865 220 -865 184 -865 -865 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -865 220 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 regular expression -------------------------------------------------------------------------------- GGAGGGGG -------------------------------------------------------------------------------- Time 25.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGCA MEME-5 width = 8 sites = 11 llr = 115 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::3:::a pos.-specific C :::::3a: probability G a:a7a7:: matrix T :a:::::: bits 2.2 * * * * 2.0 * * * * 1.8 *** * ** 1.5 *** * ** Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGGCA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3372161-3372281 98 8.40e-06 AAGACGAGGT GTGGGGCA ATTAGAATGG chr3R:10870736-10870856 78 8.40e-06 TCGAGATTTA GTGGGGCA GTGCAGATAA chr3R:14458580-14458700 55 8.40e-06 CTCACTGTCT GTGGGGCA TTATGCAACC chr3L:18812252-18812372 73 8.40e-06 TTTCATTTGA GTGGGGca tgcatacata chr3R:22022788-22022908 32 8.40e-06 GCGCGGGGGT GTGGGGCA ACGTGACGAT chr3L:8689062-8689182 93 1.69e-05 CATACGCCGC GTGGGCCA TTGGTATTGC chrX:493049-493169 88 1.69e-05 GCTCACACCC GTGGGCCA TTCCAATCAC chrX:2349621-2349741 102 1.69e-05 GGAGGGGGAG GTGGGCCA TTCCTCTGGC chr2R:10883401-10883521 54 2.77e-05 TCTCGGGCTG GTGAGGCA TCCCTTATCT chr2R:12166404-12166524 27 2.77e-05 CGAAAGGAAG GTGAGGCA ATTGGGTGTA chr3L:11065963-11066083 67 2.77e-05 TGACGTTACG GTGAGGCA ATGCATTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3372161-3372281 8.4e-06 97_[+5]_15 chr3R:10870736-10870856 8.4e-06 77_[+5]_35 chr3R:14458580-14458700 8.4e-06 54_[+5]_58 chr3L:18812252-18812372 8.4e-06 72_[+5]_40 chr3R:22022788-22022908 8.4e-06 31_[+5]_81 chr3L:8689062-8689182 1.7e-05 92_[+5]_20 chrX:493049-493169 1.7e-05 87_[+5]_25 chrX:2349621-2349741 1.7e-05 101_[+5]_11 chr2R:10883401-10883521 2.8e-05 53_[+5]_59 chr2R:12166404-12166524 2.8e-05 26_[+5]_86 chr3L:11065963-11066083 2.8e-05 66_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGCA width=8 seqs=11 chr2L:3372161-3372281 ( 98) GTGGGGCA 1 chr3R:10870736-10870856 ( 78) GTGGGGCA 1 chr3R:14458580-14458700 ( 55) GTGGGGCA 1 chr3L:18812252-18812372 ( 73) GTGGGGCA 1 chr3R:22022788-22022908 ( 32) GTGGGGCA 1 chr3L:8689062-8689182 ( 93) GTGGGCCA 1 chrX:493049-493169 ( 88) GTGGGCCA 1 chrX:2349621-2349741 ( 102) GTGGGCCA 1 chr2R:10883401-10883521 ( 54) GTGAGGCA 1 chr2R:12166404-12166524 ( 27) GTGAGGCA 1 chr3L:11065963-11066083 ( 67) GTGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.8e+003 -1010 -1010 220 -1010 -1010 -1010 -1010 182 -1010 -1010 220 -1010 -3 -1010 175 -1010 -1010 -1010 220 -1010 -1010 30 175 -1010 -1010 218 -1010 -1010 184 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCA MEME-5 regular expression -------------------------------------------------------------------------------- GTG[GA]G[GC]CA -------------------------------------------------------------------------------- Time 31.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6358320-6358440 9.73e-02 120 chr3L:4132727-4132847 1.15e-02 39_[+2(1.90e-05)]_[+2(5.82e-05)]_65 chr2R:24749953-24750073 1.88e-02 20_[+1(2.36e-05)]_92 chr3L:19703439-19703559 4.92e-01 120 chr2L:7440758-7440878 5.05e-01 120 chr3L:16879158-16879278 6.94e-02 120 chr3L:21342729-21342849 5.07e-02 39_[+1(2.36e-05)]_73 chrX:1346446-1346566 1.01e-01 10_[+2(1.90e-05)]_102 chr2R:24335710-24335830 1.43e-02 28_[+3(5.01e-05)]_84 chr2L:300141-300261 1.76e-01 120 chr3L:5553867-5553987 2.69e-01 73_[+1(5.38e-05)]_39 chr3L:14646048-14646168 1.87e-01 120 chr2L:16843002-16843122 3.56e-01 120 chr2L:8033238-8033358 4.38e-01 120 chr3R:17008430-17008550 7.08e-01 120 chr3R:11640362-11640482 6.96e-01 120 chrX:17186593-17186713 9.00e-02 75_[+3(5.01e-05)]_37 chr3L:3054236-3054356 1.07e-01 120 chrX:6062285-6062405 8.29e-05 87_[+2(1.90e-05)]_7_[+3(1.41e-05)]_\ 10 chr2R:8552367-8552487 9.61e-01 120 chr3R:9917546-9917666 2.56e-03 120 chr3R:18395023-18395143 2.34e-01 120 chr3R:15855927-15856047 5.56e-01 120 chr2R:16223041-16223161 1.42e-02 120 chr3R:15508885-15509005 6.31e-03 120 chr3L:5353737-5353857 4.46e-01 120 chr3L:13952639-13952759 6.60e-03 90_[+2(1.90e-05)]_22 chr2R:24677712-24677832 5.35e-02 120 chr2R:6138902-6139022 5.32e-01 120 chr3L:17995925-17996045 2.55e-01 120 chr2L:9501455-9501575 9.45e-01 120 chr2L:1748513-1748633 4.92e-02 120 chr2R:10852905-10853025 3.18e-01 120 chr2R:22079096-22079216 8.12e-04 11_[+1(5.38e-05)]_101 chr2L:13576461-13576581 1.17e-01 42_[+2(4.34e-05)]_70 chr3L:11218984-11219104 2.09e-01 120 chrX:16702053-16702173 5.82e-02 46_[+2(1.90e-05)]_66 chr3L:5753761-5753881 5.94e-02 120 chr3R:9043751-9043871 3.71e-02 45_[+1(7.23e-05)]_67 chr3R:30297817-30297937 2.24e-01 46_[+2(1.90e-05)]_66 chrX:1172585-1172705 2.81e-01 120 chr2L:19989553-19989673 1.13e-01 120 chr3L:1827947-1828067 2.71e-01 120 chr2L:10456061-10456181 2.67e-02 120 chr3R:7175772-7175892 2.15e-01 120 chrX:2349621-2349741 8.24e-08 53_[+2(1.90e-05)]_30_[+4(6.32e-06)]_\ 2_[+5(1.69e-05)]_11 chr2L:3341373-3341493 4.83e-01 120 chr2L:8399986-8400106 5.45e-02 62_[+3(9.08e-05)]_50 chr2R:6779206-6779326 3.66e-02 60_[+3(3.22e-05)]_52 chr2R:14225694-14225814 7.33e-01 120 chr2L:10500451-10500571 9.96e-01 120 chr3L:18952544-18952664 1.12e-01 120 chr3L:17392550-17392670 1.92e-01 120 chr2R:21159494-21159614 2.47e-01 120 chr3L:3776837-3776957 3.15e-02 25_[+1(2.36e-05)]_87 chr3L:22839400-22839520 1.39e-01 120 chr2L:6780493-6780613 5.34e-02 120 chr3R:9351537-9351657 2.77e-02 59_[+1(9.06e-05)]_53 chr2L:5520906-5521026 1.89e-01 120 chrX:10046893-10047013 2.40e-01 120 chr3L:15303772-15303892 4.11e-02 106_[+1(2.36e-05)]_6 chrX:2295521-2295641 3.48e-02 14_[+1(2.36e-05)]_98 chr3R:21890089-21890209 9.35e-01 120 chr2R:19234672-19234792 1.33e-02 120 chr2L:1631539-1631659 5.94e-01 120 chr3L:1305499-1305619 3.68e-01 120 chr3L:15140399-15140519 8.33e-02 120 chr2R:15555574-15555694 7.04e-02 120 chr3R:26463701-26463821 4.52e-02 120 chr3L:11242034-11242154 3.03e-02 14_[+5(3.87e-05)]_98 chrX:13980387-13980507 4.16e-01 26_[+1(9.06e-05)]_86 chr2R:11187655-11187775 3.35e-01 68_[+1(7.23e-05)]_44 chr2L:3165375-3165495 4.14e-01 68_[+1(9.06e-05)]_44 chrX:11856414-11856534 2.47e-02 120 chr3R:22022788-22022908 2.08e-03 31_[+5(8.40e-06)]_81 chrX:1610179-1610299 1.55e-01 120 chr2L:3894652-3894772 3.17e-01 120 chr2R:11097655-11097775 1.52e-01 6_[+3(5.01e-05)]_106 chrX:598436-598556 6.99e-01 120 chr2L:1742735-1742855 6.25e-02 120 chr3R:30385689-30385809 4.06e-02 84_[+3(9.08e-05)]_28 chr2L:10320487-10320607 8.75e-02 120 chr3R:12379396-12379516 3.88e-02 41_[+2(7.72e-05)]_71 chr3L:11264141-11264261 7.66e-01 120 chr3R:13783506-13783626 5.93e-02 11_[+3(6.79e-05)]_101 chr2L:13515774-13515894 1.55e-02 5_[+2(1.90e-05)]_107 chrX:17624615-17624735 6.16e-01 120 chrX:6706031-6706151 1.53e-01 120 chr2R:17781507-17781627 9.05e-02 120 chr3R:21015721-21015841 2.84e-03 26_[+1(5.38e-05)]_86 chr2L:2765253-2765373 5.89e-05 42_[+2(5.82e-05)]_6_[+4(6.32e-06)]_\ 56 chr3R:14290557-14290677 7.96e-01 120 chr3L:10223542-10223662 3.36e-01 120 chr3R:30391250-30391370 1.92e-01 80_[+1(9.06e-05)]_32 chr2R:7283922-7284042 1.54e-01 61_[+1(7.23e-05)]_51 chr3R:30272315-30272435 2.71e-04 48_[+4(6.32e-06)]_64 chr3L:16145482-16145602 7.32e-01 120 chrX:3772448-3772568 6.96e-01 120 chr3L:11065963-11066083 1.53e-03 66_[+5(2.77e-05)]_46 chr3R:13017708-13017828 9.78e-01 120 chrX:2193312-2193432 9.93e-03 120 chrX:3721191-3721311 4.39e-02 70_[+3(9.08e-05)]_42 chr3L:16383216-16383336 6.28e-02 120 chr3L:18812252-18812372 2.60e-02 72_[+5(8.40e-06)]_40 chr3L:16895553-16895673 6.61e-01 120 chr3L:17624034-17624154 1.01e-01 120 chr3L:3926525-3926645 2.10e-02 120 chr2L:16255925-16256045 9.06e-02 120 chrX:5884438-5884558 3.63e-03 33_[+1(7.23e-05)]_12_[+2(1.90e-05)]_\ 59 chr2L:9513898-9514018 1.24e-01 39_[+2(1.90e-05)]_73 chrX:8111070-8111190 7.95e-01 120 chr2L:9707661-9707781 2.52e-01 120 chr3L:1739771-1739891 2.96e-02 80_[+3(3.22e-05)]_32 chr2R:19200938-19201058 4.02e-01 120 chr2R:9028833-9028953 7.83e-02 120 chr2R:19459569-19459689 6.34e-01 120 chr3R:21172194-21172314 1.88e-01 120 chr2L:5311033-5311153 4.29e-01 120 chr3R:12450776-12450896 2.60e-01 42_[+3(6.79e-05)]_70 chrX:2197573-2197693 5.47e-01 120 chr3L:9674424-9674544 3.60e-01 120 chr3R:30451089-30451209 8.08e-02 120 chr3R:17111190-17111310 2.61e-01 120 chrX:11548026-11548146 3.82e-01 120 chr2R:8453476-8453596 2.07e-02 97_[+2(5.82e-05)]_15 chr3R:12648884-12649004 2.56e-02 120 chr3L:6141652-6141772 6.72e-01 120 chr3L:3086707-3086827 3.39e-01 120 chr2R:9129577-9129697 3.47e-01 120 chr2R:23718197-23718317 3.29e-01 120 chr2R:9130475-9130595 4.99e-01 120 chr2L:18953640-18953760 3.99e-01 120 chr2R:14493610-14493730 6.29e-01 120 chr3R:24161123-24161243 1.48e-01 120 chr3R:5299711-5299831 2.41e-02 120 chr2R:24130683-24130803 9.57e-02 36_[+2(7.72e-05)]_76 chr3R:9927270-9927390 9.16e-01 120 chrX:11420124-11420244 9.63e-02 120 chrX:9991151-9991271 1.83e-01 120 chr2L:8946823-8946943 2.81e-01 120 chr3L:21979940-21980060 2.00e-01 120 chr4:358204-358324 2.45e-02 120 chr3L:6219688-6219808 3.26e-01 120 chr2R:10043911-10044031 7.89e-01 120 chr3R:21970109-21970229 2.33e-01 120 chr3R:27927044-27927164 5.64e-01 120 chr3R:19835148-19835268 7.13e-01 120 chr3R:12700132-12700252 3.49e-02 73_[+3(9.08e-05)]_39 chr3R:21754041-21754161 1.54e-01 120 chr2L:7678381-7678501 3.44e-02 81_[+3(6.79e-05)]_31 chr2R:13025511-13025631 6.89e-01 120 chrX:8460729-8460849 7.66e-02 120 chr3R:5261387-5261507 5.53e-02 54_[+3(1.41e-05)]_58 chr2R:14515638-14515758 2.33e-01 76_[+1(5.38e-05)]_36 chr3L:6036271-6036391 5.23e-01 120 chr3R:16292047-16292167 5.62e-01 120 chr3L:1325434-1325554 1.17e-01 120 chr3R:19910475-19910595 4.92e-02 55_[+2(4.34e-05)]_57 chr2R:19502665-19502785 7.32e-02 120 chr2L:20337913-20338033 1.18e-01 120 chr3R:9886178-9886298 7.26e-01 120 chr2R:18057265-18057385 6.91e-01 120 chr3L:11525935-11526055 4.28e-01 120 chrX:2049223-2049343 1.00e+00 120 chr3R:23316978-23317098 7.36e-03 70_[+2(1.90e-05)]_42 chrX:493049-493169 2.72e-03 40_[+1(9.06e-05)]_39_[+5(1.69e-05)]_\ 25 chr3L:16867356-16867476 1.94e-01 108_[+3(9.08e-05)]_4 chr3R:7173029-7173149 6.95e-01 120 chr3R:11245931-11246051 7.78e-03 36_[+2(7.72e-05)]_76 chrX:9103404-9103524 1.97e-02 120 chr3R:5621839-5621959 4.73e-02 120 chr2R:12166404-12166524 3.24e-03 26_[+5(2.77e-05)]_86 chr3L:9766531-9766651 5.11e-03 120 chr2L:5765281-5765401 1.93e-01 120 chr3L:18792129-18792249 3.96e-02 64_[+3(1.41e-05)]_48 chr3L:9056091-9056211 2.21e-01 120 chrX:2302952-2303072 1.61e-03 23_[+3(1.41e-05)]_89 chr2R:12263204-12263324 1.62e-02 47_[+3(6.79e-05)]_65 chr3L:16984139-16984259 1.48e-01 32_[+1(7.23e-05)]_80 chr3R:8668611-8668731 6.05e-01 120 chr2R:13997419-13997539 6.99e-03 24_[+1(2.36e-05)]_88 chrX:16645594-16645714 5.31e-01 120 chr2R:20256785-20256905 4.37e-03 120 chr2R:19981047-19981167 5.13e-02 120 chr3R:14458580-14458700 1.17e-03 54_[+5(8.40e-06)]_58 chr3R:8353122-8353242 1.09e-01 120 chrX:2142717-2142837 8.05e-02 81_[+3(3.22e-05)]_31 chrX:13372654-13372774 1.16e-01 59_[+1(7.23e-05)]_53 chr2R:6522884-6523004 1.59e-01 120 chr2L:3649248-3649368 2.33e-02 120 chr2R:23552225-23552345 1.81e-01 20_[+2(4.34e-05)]_92 chr2R:16127359-16127479 2.22e-01 39_[+2(7.72e-05)]_73 chr3R:9570795-9570915 4.07e-01 120 chr3R:21745120-21745240 2.28e-02 120 chr3R:9597436-9597556 3.42e-01 120 chr2R:22545090-22545210 6.57e-01 120 chr3L:8842539-8842659 7.16e-01 120 chr2R:7780378-7780498 3.23e-01 120 chr3L:6962267-6962387 4.02e-01 120 chr2L:1693071-1693191 2.79e-02 81_[+2(1.90e-05)]_31 chrX:3260670-3260790 2.82e-02 49_[+3(5.01e-05)]_63 chr3L:2490927-2491047 1.23e-01 81_[+2(5.82e-05)]_31 chr3L:4120621-4120741 4.21e-01 120 chr2R:13335955-13336075 6.28e-01 120 chr3R:22782167-22782287 7.08e-01 120 chr2L:10502357-10502477 2.09e-02 75_[+1(9.06e-05)]_37 chrX:9036253-9036373 3.09e-02 68_[+3(5.01e-05)]_44 chr2L:6960328-6960448 2.89e-01 120 chr2L:12028924-12029044 3.19e-01 120 chr2L:18509264-18509384 5.37e-01 120 chr2R:10883401-10883521 1.03e-02 53_[+5(2.77e-05)]_59 chr3R:20316682-20316802 1.41e-01 62_[+2(4.34e-05)]_50 chr3R:12365569-12365689 1.36e-01 71_[+1(7.23e-05)]_41 chr3R:23773892-23774012 6.69e-02 98_[+4(2.27e-05)]_14 chr2R:16139613-16139733 5.05e-01 120 chr2R:9136775-9136895 3.90e-01 120 chr2L:6683489-6683609 9.46e-01 120 chr3R:18481738-18481858 8.40e-01 120 chr3L:18099852-18099972 8.57e-01 120 chr3R:10870736-10870856 1.68e-03 77_[+5(8.40e-06)]_4_[+3(6.79e-05)]_\ 23 chr3R:15298160-15298280 1.37e-03 57_[+4(6.32e-06)]_22_[+3(5.01e-05)]_\ 25 chr3R:6112853-6112973 1.66e-01 120 chr2R:22589380-22589500 1.11e-02 47_[+1(5.38e-05)]_5_[+2(4.34e-05)]_\ 52 chrX:8881833-8881953 8.18e-02 120 chr3L:14006867-14006987 1.46e-01 120 chr3R:7188127-7188247 3.73e-01 120 chr3L:19696228-19696348 3.07e-02 47_[+1(5.38e-05)]_65 chr2R:14134700-14134820 1.86e-01 120 chr3L:3350547-3350667 2.00e-03 14_[+1(2.36e-05)]_77_[+3(6.79e-05)]_\ 13 chrX:19293434-19293554 8.74e-02 31_[+1(2.36e-05)]_81 chr3R:11637729-11637849 2.61e-01 120 chr3L:8689062-8689182 9.02e-02 92_[+5(1.69e-05)]_20 chr3R:9338871-9338991 6.18e-01 120 chr2R:9427334-9427454 8.35e-02 120 chr2R:9036446-9036566 1.88e-01 36_[+1(2.36e-05)]_76 chr3L:11239518-11239638 3.53e-02 79_[+1(5.38e-05)]_33 chr3L:12079585-12079705 2.28e-02 60_[+1(2.36e-05)]_52 chr3L:11973016-11973136 3.60e-01 120 chr3L:2648099-2648219 6.29e-01 120 chr3R:9963797-9963917 9.97e-01 120 chr2L:6658128-6658248 3.43e-01 120 chr3L:14207528-14207648 3.64e-01 120 chr2R:7153502-7153622 6.15e-02 30_[+1(2.36e-05)]_82 chr3L:5181133-5181253 3.29e-02 97_[+3(3.22e-05)]_15 chr2L:15612113-15612233 1.59e-01 105_[+2(5.82e-05)]_7 chr2L:1722409-1722529 3.11e-02 28_[+1(5.38e-05)]_84 chr2L:3372161-3372281 7.93e-04 97_[+5(8.40e-06)]_15 chr2L:9619017-9619137 1.17e-02 61_[+2(4.34e-05)]_51 chrX:7735352-7735472 3.11e-01 120 chrX:2033190-2033310 3.03e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************