******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/vfl.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:17801709-17801829 1.0000 120 chr3L:14789842-14789962 1.0000 120 chr3L:19556819-19556939 1.0000 120 chrX:13817517-13817637 1.0000 120 chr3L:8175966-8176086 1.0000 120 chr3L:630394-630514 1.0000 120 chrX:22433029-22433149 1.0000 120 chr2R:22689724-22689844 1.0000 120 chr3R:23820383-23820503 1.0000 120 chr3L:11556609-11556729 1.0000 120 chr2L:7443054-7443174 1.0000 120 chrX:8407217-8407337 1.0000 120 chr2L:8810003-8810123 1.0000 120 chr3R:20543393-20543513 1.0000 120 chr2L:5325005-5325125 1.0000 120 chr2R:12038886-12039006 1.0000 120 chr2L:9988306-9988426 1.0000 120 chr2R:21048312-21048432 1.0000 120 chr2R:21313173-21313293 1.0000 120 chrX:18366692-18366812 1.0000 120 chr3R:16240829-16240949 1.0000 120 chr3R:16886623-16886743 1.0000 120 chr2R:9554844-9554964 1.0000 120 chr2L:15066236-15066356 1.0000 120 chr2R:8232401-8232521 1.0000 120 chr3L:9041322-9041442 1.0000 120 chrX:6092260-6092380 1.0000 120 chr2L:3058933-3059053 1.0000 120 chr2R:16850308-16850428 1.0000 120 chr3R:16482412-16482532 1.0000 120 chr3R:15293138-15293258 1.0000 120 chrX:19783671-19783791 1.0000 120 chr2R:14882104-14882224 1.0000 120 chr2R:23894939-23895059 1.0000 120 chr2R:11182899-11183019 1.0000 120 chr3L:11324982-11325102 1.0000 120 chr2R:10583185-10583305 1.0000 120 chr3L:9425951-9426071 1.0000 120 chr2R:7653883-7654003 1.0000 120 chr3R:18243754-18243874 1.0000 120 chr3L:14276206-14276326 1.0000 120 chr3L:9614100-9614220 1.0000 120 chr2R:22690801-22690921 1.0000 120 chr2L:8841792-8841912 1.0000 120 chr3L:9004928-9005048 1.0000 120 chr2L:3938990-3939110 1.0000 120 chr3R:11796930-11797050 1.0000 120 chr2R:23656729-23656849 1.0000 120 chr3L:3037353-3037473 1.0000 120 chr2R:10485443-10485563 1.0000 120 chr3R:16811799-16811919 1.0000 120 chr2R:18180196-18180316 1.0000 120 chr2R:20961143-20961263 1.0000 120 chr3L:11237432-11237552 1.0000 120 chr2R:10596326-10596446 1.0000 120 chr3R:23760561-23760681 1.0000 120 chr2R:10838675-10838795 1.0000 120 chrX:618662-618782 1.0000 120 chr2R:17548401-17548521 1.0000 120 chr2L:5225772-5225892 1.0000 120 chr3L:11927345-11927465 1.0000 120 chr3R:26023379-26023499 1.0000 120 chr3R:15347978-15348098 1.0000 120 chr2R:12198844-12198964 1.0000 120 chr3R:23927608-23927728 1.0000 120 chr3L:11243479-11243599 1.0000 120 chr3R:23228770-23228890 1.0000 120 chrX:17578321-17578441 1.0000 120 chr2L:18707972-18708092 1.0000 120 chr3L:7760086-7760206 1.0000 120 chr2R:16322142-16322262 1.0000 120 chr2L:19158005-19158125 1.0000 120 chr3L:3818577-3818697 1.0000 120 chr2R:24086512-24086632 1.0000 120 chr2R:6811143-6811263 1.0000 120 chr2R:12437063-12437183 1.0000 120 chr2L:8166077-8166197 1.0000 120 chr3L:726683-726803 1.0000 120 chr3R:4346653-4346773 1.0000 120 chrX:11149296-11149416 1.0000 120 chr3L:5152543-5152663 1.0000 120 chr3R:15989440-15989560 1.0000 120 chrX:1858926-1859046 1.0000 120 chr3L:19642770-19642890 1.0000 120 chr2R:13019417-13019537 1.0000 120 chr2R:16202916-16203036 1.0000 120 chrX:19762263-19762383 1.0000 120 chr2R:10078257-10078377 1.0000 120 chr3R:15963815-15963935 1.0000 120 chr2L:11199181-11199301 1.0000 120 chrX:1239878-1239998 1.0000 120 chrX:14580510-14580630 1.0000 120 chr3L:8440802-8440922 1.0000 120 chr3R:21140523-21140643 1.0000 120 chr3R:29116285-29116405 1.0000 120 chr2R:11970310-11970430 1.0000 120 chr2R:17766866-17766986 1.0000 120 chr2R:18846579-18846699 1.0000 120 chr2L:2999240-2999360 1.0000 120 chr2L:1987906-1988026 1.0000 120 chr3L:8720130-8720250 1.0000 120 chr3R:31636703-31636823 1.0000 120 chr2R:7636695-7636815 1.0000 120 chr2L:20734269-20734389 1.0000 120 chr3R:18663491-18663611 1.0000 120 chrX:16683919-16684039 1.0000 120 chr2L:18484737-18484857 1.0000 120 chr2R:11199098-11199218 1.0000 120 chr2L:10437472-10437592 1.0000 120 chr2R:9116478-9116598 1.0000 120 chrX:6997190-6997310 1.0000 120 chr2L:4031830-4031950 1.0000 120 chrX:15462574-15462694 1.0000 120 chr3L:10860171-10860291 1.0000 120 chr2L:16251928-16252048 1.0000 120 chr3R:26912832-26912952 1.0000 120 chr3L:1496573-1496693 1.0000 120 chr2R:15934754-15934874 1.0000 120 chr2R:20618252-20618372 1.0000 120 chr3R:14741449-14741569 1.0000 120 chr2R:9553574-9553694 1.0000 120 chr3R:23941738-23941858 1.0000 120 chr2R:10160258-10160378 1.0000 120 chr2R:22450468-22450588 1.0000 120 chr2L:8009401-8009521 1.0000 120 chr3L:9838620-9838740 1.0000 120 chr2R:24964124-24964244 1.0000 120 chr2R:16951843-16951963 1.0000 120 chr3L:10866706-10866826 1.0000 120 chrX:1477045-1477165 1.0000 120 chr2R:10600535-10600655 1.0000 120 chr3R:4805088-4805208 1.0000 120 chr3R:9240098-9240218 1.0000 120 chr3R:7108298-7108418 1.0000 120 chrX:3950222-3950342 1.0000 120 chrX:17229919-17230039 1.0000 120 chr2R:14357265-14357385 1.0000 120 chr3R:9510325-9510445 1.0000 120 chr3R:18740261-18740381 1.0000 120 chr2L:18146623-18146743 1.0000 120 chr2R:18660642-18660762 1.0000 120 chr3R:13644821-13644941 1.0000 120 chr3R:28845036-28845156 1.0000 120 chr2L:295010-295130 1.0000 120 chr2L:102284-102404 1.0000 120 chrX:3485542-3485662 1.0000 120 chr2R:10122614-10122734 1.0000 120 chr2L:203676-203796 1.0000 120 chr3L:9461730-9461850 1.0000 120 chr3R:15644927-15645047 1.0000 120 chr2L:1207585-1207705 1.0000 120 chr2R:24629594-24629714 1.0000 120 chr3L:9698228-9698348 1.0000 120 chrX:17652576-17652696 1.0000 120 chr3L:7243928-7244048 1.0000 120 chr2L:10428665-10428785 1.0000 120 chr2R:23668833-23668953 1.0000 120 chr3R:17002376-17002496 1.0000 120 chrX:19268761-19268881 1.0000 120 chr2L:1614206-1614326 1.0000 120 chr3R:18315380-18315500 1.0000 120 chr3L:21516975-21517095 1.0000 120 chr3L:5604078-5604198 1.0000 120 chr3L:5768985-5769105 1.0000 120 chr2R:21090938-21091058 1.0000 120 chr3R:8301355-8301475 1.0000 120 chr3L:18822548-18822668 1.0000 120 chr2R:9544968-9545088 1.0000 120 chr3R:16359320-16359440 1.0000 120 chr2L:8528472-8528592 1.0000 120 chr3R:14479751-14479871 1.0000 120 chr2R:7815180-7815300 1.0000 120 chr3L:12115958-12116078 1.0000 120 chrX:1033223-1033343 1.0000 120 chr2L:13829766-13829886 1.0000 120 chr2R:13968166-13968286 1.0000 120 chr2L:18590828-18590948 1.0000 120 chr3R:13812834-13812954 1.0000 120 chrX:9120953-9121073 1.0000 120 chrX:9496019-9496139 1.0000 120 chrX:10601741-10601861 1.0000 120 chr2L:13878975-13879095 1.0000 120 chr2L:6907863-6907983 1.0000 120 chr3L:3226240-3226360 1.0000 120 chrX:20511505-20511625 1.0000 120 chr2R:9847846-9847966 1.0000 120 chrX:13822209-13822329 1.0000 120 chr3R:11581507-11581627 1.0000 120 chr3R:15547939-15548059 1.0000 120 chr2R:10066636-10066756 1.0000 120 chr2L:7412319-7412439 1.0000 120 chr2L:20918835-20918955 1.0000 120 chr3R:10350104-10350224 1.0000 120 chrX:4116918-4117038 1.0000 120 chr3R:26280529-26280649 1.0000 120 chr3L:9456026-9456146 1.0000 120 chr2R:21128450-21128570 1.0000 120 chr3R:17078130-17078250 1.0000 120 chr3R:27239055-27239175 1.0000 120 chr2R:14302849-14302969 1.0000 120 chr3R:19094202-19094322 1.0000 120 chrX:796469-796589 1.0000 120 chr2R:10123681-10123801 1.0000 120 chr3R:5685746-5685866 1.0000 120 chr3R:19877591-19877711 1.0000 120 chr2R:9103212-9103332 1.0000 120 chr3R:14817990-14818110 1.0000 120 chr3R:14714169-14714289 1.0000 120 chr3L:6743128-6743248 1.0000 120 chr3R:11628527-11628647 1.0000 120 chr2R:19446271-19446391 1.0000 120 chr2R:21480887-21481007 1.0000 120 chr3R:8938629-8938749 1.0000 120 chr2L:15039448-15039568 1.0000 120 chr2L:21658588-21658708 1.0000 120 chrX:7944835-7944955 1.0000 120 chr3L:9864479-9864599 1.0000 120 chr2L:488308-488428 1.0000 120 chr3L:8604414-8604534 1.0000 120 chrX:2443942-2444062 1.0000 120 chrX:21629950-21630070 1.0000 120 chr2R:17161009-17161129 1.0000 120 chr3R:30052538-30052658 1.0000 120 chr2R:6971550-6971670 1.0000 120 chr3L:21445747-21445867 1.0000 120 chr3R:18215423-18215543 1.0000 120 chr2L:6956900-6957020 1.0000 120 chr3R:8801449-8801569 1.0000 120 chr3L:18672300-18672420 1.0000 120 chr2L:3042304-3042424 1.0000 120 chr2L:19397848-19397968 1.0000 120 chr3L:16808268-16808388 1.0000 120 chr3R:29493402-29493522 1.0000 120 chr2R:18277286-18277406 1.0000 120 chr2R:17545077-17545197 1.0000 120 chr2R:21709578-21709698 1.0000 120 chr3R:27677155-27677275 1.0000 120 chr3R:26566999-26567119 1.0000 120 chr3R:9038825-9038945 1.0000 120 chr3R:13030628-13030748 1.0000 120 chr3L:17961664-17961784 1.0000 120 chr2L:2883289-2883409 1.0000 120 chr2L:14359073-14359193 1.0000 120 chr2R:16170836-16170956 1.0000 120 chr3R:5856338-5856458 1.0000 120 chrX:2158953-2159073 1.0000 120 chrX:18370849-18370969 1.0000 120 chr3R:21273770-21273890 1.0000 120 chr3L:15565930-15566050 1.0000 120 chr3R:20574793-20574913 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_vfl/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/vfl.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.214 G 0.21 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.214 G 0.21 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 58 llr = 501 E-value = 1.5e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:8 pos.-specific C 2:2a:::: probability G ::::a::: matrix T 6:8:::a2 bits 2.3 ** 2.0 ** 1.8 * ** * 1.6 * **** Relative 1.4 * **** Entropy 1.1 ******* (12.5 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2158953-2159073 39 2.56e-05 TTCATGAAAC TATCGATA TGCCGTAGAC chr3R:27677155-27677275 48 2.56e-05 ACCAACGGCT TATCGATA AGTACCGGCT chr3R:29493402-29493522 53 2.56e-05 CGTTTATCGA TATCGATA GGCGGGCGAC chr2L:6956900-6957020 73 2.56e-05 CCCTGGCAGA TATCGATA GGCCCATCGA chr2L:15039448-15039568 47 2.56e-05 CCTATCGGAC TATCGATA CAACATCAAC chr3R:27239055-27239175 92 2.56e-05 TGACTATGCT TATCGATA AGAAAACTCA chr2R:21128450-21128570 108 2.56e-05 AGCGAACACT TATCGATA CGCGG chr3R:11581507-11581627 49 2.56e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chr2L:13829766-13829886 1 2.56e-05 . TATCGATA TTTTTCGATT chrX:1033223-1033343 3 2.56e-05 AC TATCGATA CAAGCCCAGT chr3L:12115958-12116078 74 2.56e-05 AATGTTAAAT TATCGATA AGCCAAACCA chr3L:18822548-18822668 17 2.56e-05 ATAATCGAAA TATCGATA TCTTCGGCCC chrX:17652576-17652696 5 2.56e-05 TTTT TATCGATA ACCCGATACG chr3L:9698228-9698348 38 2.56e-05 CCCGAAGCCC TATCGATA CGTCAATCGA chr2L:203676-203796 95 2.56e-05 AATATCTGGC TATCGATA AGAATGAATA chr2L:102284-102404 101 2.56e-05 TGTTTTTATT TATCGATA GTGTCGGCTT chr2R:18660642-18660762 24 2.56e-05 ACAGCTTACT TATCGATA AAAGTATTTC chr2R:20618252-20618372 81 2.56e-05 CCACCACTAC TATCGATA GCCGTCCACG chrX:16683919-16684039 8 2.56e-05 AAGCACT TATCGATA ACCGTGTGCA chr3R:29116285-29116405 107 2.56e-05 GGTGTCCTCA TATCGATA GCGATA chr2R:24086512-24086632 53 2.56e-05 CCAACatcga tatcgata tctgtgtctc chr2R:18180196-18180316 83 2.56e-05 CTCCCGCTGT TATCGATA AGACCACCAT chr3R:11796930-11797050 102 2.56e-05 GCTTTGAATG TATCGATA GTTTCGGACT chr2R:16850308-16850428 57 2.56e-05 GGCAGGGATG TATCGATA ACACAAATCA chr2L:5325005-5325125 31 2.56e-05 ACTATTTTGT TATCGATA TCTATGCAGC chrX:8407217-8407337 106 2.56e-05 TGGGATACGT TATCGATA ACGTTAC chrX:18370849-18370969 77 4.45e-05 CGATGTGTGA CATCGATA TCAAGCAAAA chrX:9120953-9121073 79 4.45e-05 TTAAATTTGT CATCGATA TCTAAGTTTA chr3R:17002376-17002496 14 4.45e-05 TTGCCACCGC CATCGATA GTTTTCTTAC chrX:3485542-3485662 62 4.45e-05 CACATTGTGC CATCGATA GTTCCAGGCA chrX:14580510-14580630 41 4.45e-05 CTTGCTGGCC CATCGATA AGAAGCGGTT chr3L:3818577-3818697 40 4.45e-05 CAAGAGCACA CATCGATA GAGCGGAAGT chr3R:21273770-21273890 83 6.96e-05 CTCTGCATGC AATCGATA GTCGGAATCG chr3L:9864479-9864599 101 6.96e-05 CATTGTTGAC AATCGATA TAGCCAAGTC chr2R:19446271-19446391 61 6.96e-05 CAGTGTTGTC AATCGATA AATTATCGAT chr2R:7653883-7654003 87 6.96e-05 GCTATCGACG AATCGATA CATGCTTTCC chr2L:18590828-18590948 45 8.84e-05 TAATCTAAGA TACCGATA GCATCGCGCA chr2R:21090938-21091058 109 8.84e-05 ATTTGAATAA TACCGATA GTTA chr2L:8528472-8528592 14 1.15e-04 TAGGTCCGAT TATCGATT GGCCGATTGG chrX:15462574-15462694 76 1.15e-04 TTGCTTTTAC TATCGATT ACAATGCCGG chr3L:14789842-14789962 21 1.15e-04 GGCGCAGTAC TATCGATT GTCCCTGATT chr3L:10860171-10860291 101 1.28e-04 ACAACGGCCA CACCGATA CAGACAACAC chr2R:18846579-18846699 57 1.28e-04 GTGACTTCTT CACCGATA TTCCTAATCC chr2R:9554844-9554964 107 1.28e-04 CTACATTGTA CACCGATA GTCAAT chr3R:20543393-20543513 51 1.28e-04 AAACAGGTCG CACCGATA CCTGACCCCC chr3R:8801449-8801569 78 1.48e-04 TGGCTGCAAG CATCGATT AAATACAAAA chr2L:10437472-10437592 109 1.48e-04 TCTAGAAACA CATCGATT AACG chr3R:23760561-23760681 51 1.48e-04 AGTCAGCTGT CATCGATT TGTTATCGGT chr3R:19094202-19094322 108 1.66e-04 CCCATGCTGA AACCGATA ACAAA chr3L:5152543-5152663 84 1.66e-04 CATGCTCGAT AACCGATA GCGGGCTTTG chr3R:13030628-13030748 57 1.92e-04 AGAAACGAGT AATCGATT CTGGTTCGAT chr2R:17545077-17545197 98 1.92e-04 TTAAATTTTA AATCGATT TAATGTCGAT chrX:4116918-4117038 12 1.92e-04 ACTATCGACC AATCGATT ACCGCCACAG chr3L:11237432-11237552 76 1.92e-04 GTAGCGCTGA AATCGATT TCGGACGCCC chr3R:18243754-18243874 43 1.92e-04 TCGATGAATG AATCGATT GTGTCGCCGG chr2L:4031830-4031950 29 2.11e-04 CGCACATCTT TACCGATT TACCTGGGAA chr3R:14479751-14479871 57 2.30e-04 TTTACATACT TATCGGTA CGTATGTGGA chr2R:14357265-14357385 94 2.30e-04 TACTTGGCGA TATCGGTA TTTCGGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2158953-2159073 2.6e-05 38_[+1]_74 chr3R:27677155-27677275 2.6e-05 47_[+1]_65 chr3R:29493402-29493522 2.6e-05 52_[+1]_60 chr2L:6956900-6957020 2.6e-05 72_[+1]_40 chr2L:15039448-15039568 2.6e-05 46_[+1]_66 chr3R:27239055-27239175 2.6e-05 91_[+1]_21 chr2R:21128450-21128570 2.6e-05 107_[+1]_5 chr3R:11581507-11581627 2.6e-05 48_[+1]_64 chr2L:13829766-13829886 2.6e-05 [+1]_112 chrX:1033223-1033343 2.6e-05 2_[+1]_110 chr3L:12115958-12116078 2.6e-05 73_[+1]_39 chr3L:18822548-18822668 2.6e-05 16_[+1]_96 chrX:17652576-17652696 2.6e-05 4_[+1]_108 chr3L:9698228-9698348 2.6e-05 37_[+1]_75 chr2L:203676-203796 2.6e-05 94_[+1]_18 chr2L:102284-102404 2.6e-05 100_[+1]_12 chr2R:18660642-18660762 2.6e-05 23_[+1]_89 chr2R:20618252-20618372 2.6e-05 80_[+1]_32 chrX:16683919-16684039 2.6e-05 7_[+1]_105 chr3R:29116285-29116405 2.6e-05 106_[+1]_6 chr2R:24086512-24086632 2.6e-05 52_[+1]_60 chr2R:18180196-18180316 2.6e-05 82_[+1]_30 chr3R:11796930-11797050 2.6e-05 101_[+1]_11 chr2R:16850308-16850428 2.6e-05 56_[+1]_56 chr2L:5325005-5325125 2.6e-05 30_[+1]_82 chrX:8407217-8407337 2.6e-05 105_[+1]_7 chrX:18370849-18370969 4.4e-05 76_[+1]_36 chrX:9120953-9121073 4.4e-05 78_[+1]_34 chr3R:17002376-17002496 4.4e-05 13_[+1]_99 chrX:3485542-3485662 4.4e-05 61_[+1]_51 chrX:14580510-14580630 4.4e-05 40_[+1]_72 chr3L:3818577-3818697 4.4e-05 39_[+1]_73 chr3R:21273770-21273890 7e-05 82_[+1]_30 chr3L:9864479-9864599 7e-05 100_[+1]_12 chr2R:19446271-19446391 7e-05 60_[+1]_52 chr2R:7653883-7654003 7e-05 86_[+1]_26 chr2L:18590828-18590948 8.8e-05 44_[+1]_68 chr2R:21090938-21091058 8.8e-05 108_[+1]_4 chr2L:8528472-8528592 0.00011 13_[+1]_99 chrX:15462574-15462694 0.00011 75_[+1]_37 chr3L:14789842-14789962 0.00011 20_[+1]_92 chr3L:10860171-10860291 0.00013 100_[+1]_12 chr2R:18846579-18846699 0.00013 56_[+1]_56 chr2R:9554844-9554964 0.00013 106_[+1]_6 chr3R:20543393-20543513 0.00013 50_[+1]_62 chr3R:8801449-8801569 0.00015 77_[+1]_35 chr2L:10437472-10437592 0.00015 108_[+1]_4 chr3R:23760561-23760681 0.00015 50_[+1]_62 chr3R:19094202-19094322 0.00017 107_[+1]_5 chr3L:5152543-5152663 0.00017 83_[+1]_29 chr3R:13030628-13030748 0.00019 56_[+1]_56 chr2R:17545077-17545197 0.00019 97_[+1]_15 chrX:4116918-4117038 0.00019 11_[+1]_101 chr3L:11237432-11237552 0.00019 75_[+1]_37 chr3R:18243754-18243874 0.00019 42_[+1]_70 chr2L:4031830-4031950 0.00021 28_[+1]_84 chr3R:14479751-14479871 0.00023 56_[+1]_56 chr2R:14357265-14357385 0.00023 93_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=58 chrX:2158953-2159073 ( 39) TATCGATA 1 chr3R:27677155-27677275 ( 48) TATCGATA 1 chr3R:29493402-29493522 ( 53) TATCGATA 1 chr2L:6956900-6957020 ( 73) TATCGATA 1 chr2L:15039448-15039568 ( 47) TATCGATA 1 chr3R:27239055-27239175 ( 92) TATCGATA 1 chr2R:21128450-21128570 ( 108) TATCGATA 1 chr3R:11581507-11581627 ( 49) TATCGATA 1 chr2L:13829766-13829886 ( 1) TATCGATA 1 chrX:1033223-1033343 ( 3) TATCGATA 1 chr3L:12115958-12116078 ( 74) TATCGATA 1 chr3L:18822548-18822668 ( 17) TATCGATA 1 chrX:17652576-17652696 ( 5) TATCGATA 1 chr3L:9698228-9698348 ( 38) TATCGATA 1 chr2L:203676-203796 ( 95) TATCGATA 1 chr2L:102284-102404 ( 101) TATCGATA 1 chr2R:18660642-18660762 ( 24) TATCGATA 1 chr2R:20618252-20618372 ( 81) TATCGATA 1 chrX:16683919-16684039 ( 8) TATCGATA 1 chr3R:29116285-29116405 ( 107) TATCGATA 1 chr2R:24086512-24086632 ( 53) TATCGATA 1 chr2R:18180196-18180316 ( 83) TATCGATA 1 chr3R:11796930-11797050 ( 102) TATCGATA 1 chr2R:16850308-16850428 ( 57) TATCGATA 1 chr2L:5325005-5325125 ( 31) TATCGATA 1 chrX:8407217-8407337 ( 106) TATCGATA 1 chrX:18370849-18370969 ( 77) CATCGATA 1 chrX:9120953-9121073 ( 79) CATCGATA 1 chr3R:17002376-17002496 ( 14) CATCGATA 1 chrX:3485542-3485662 ( 62) CATCGATA 1 chrX:14580510-14580630 ( 41) CATCGATA 1 chr3L:3818577-3818697 ( 40) CATCGATA 1 chr3R:21273770-21273890 ( 83) AATCGATA 1 chr3L:9864479-9864599 ( 101) AATCGATA 1 chr2R:19446271-19446391 ( 61) AATCGATA 1 chr2R:7653883-7654003 ( 87) AATCGATA 1 chr2L:18590828-18590948 ( 45) TACCGATA 1 chr2R:21090938-21091058 ( 109) TACCGATA 1 chr2L:8528472-8528592 ( 14) TATCGATT 1 chrX:15462574-15462694 ( 76) TATCGATT 1 chr3L:14789842-14789962 ( 21) TATCGATT 1 chr3L:10860171-10860291 ( 101) CACCGATA 1 chr2R:18846579-18846699 ( 57) CACCGATA 1 chr2R:9554844-9554964 ( 107) CACCGATA 1 chr3R:20543393-20543513 ( 51) CACCGATA 1 chr3R:8801449-8801569 ( 78) CATCGATT 1 chr2L:10437472-10437592 ( 109) CATCGATT 1 chr3R:23760561-23760681 ( 51) CATCGATT 1 chr3R:19094202-19094322 ( 108) AACCGATA 1 chr3L:5152543-5152663 ( 84) AACCGATA 1 chr3R:13030628-13030748 ( 57) AATCGATT 1 chr2R:17545077-17545197 ( 98) AATCGATT 1 chrX:4116918-4117038 ( 12) AATCGATT 1 chr3L:11237432-11237552 ( 76) AATCGATT 1 chr3R:18243754-18243874 ( 43) AATCGATT 1 chr2L:4031830-4031950 ( 29) TACCGATT 1 chr3R:14479751-14479871 ( 57) TATCGGTA 1 chr2R:14357265-14357385 ( 94) TATCGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 1.5e-022 -59 7 -1250 101 181 -1250 -1250 -1250 -1250 -46 -1250 154 -1250 223 -1250 -1250 -1250 -1250 225 -1250 176 -1250 -261 -1250 -1250 -1250 -1250 178 148 -1250 -1250 -49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.5e-022 0.189655 0.224138 0.000000 0.586207 1.000000 0.000000 0.000000 0.000000 0.000000 0.155172 0.000000 0.844828 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.965517 0.000000 0.034483 0.000000 0.000000 0.000000 0.000000 1.000000 0.793103 0.000000 0.000000 0.206897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]ATCGAT[AT] -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GBYGSCAM MEME-2 width = 8 sites = 43 llr = 353 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a5 pos.-specific C :24:6a:3 probability G a4:a4::2 matrix T :46::::: bits 2.3 * * * 2.0 * * * 1.8 * * ** 1.6 * * ** Relative 1.4 * **** Entropy 1.1 * **** (11.8 bits) 0.9 * ***** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTTGCCAA consensus GC G C sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14817990-14818110 71 1.76e-05 ctgctgctCA GGTGCCAA CAAACTCGCC chr2R:14302849-14302969 96 5.48e-05 ATGACTGATT GGCGCCAC TTTCAAAACC chr3L:9456026-9456146 45 5.48e-05 tgCAGCGACA GGCGCCAC AATGCAACCC chr3R:11581507-11581627 21 5.48e-05 AAACTTGAAC GTTGCCAC CTGGTTTTTG chr2L:1614206-1614326 49 5.48e-05 CATTCTCAGA GTTGCCAC TACGATTGCT chrX:19268761-19268881 27 5.48e-05 GAGGGGGGAA GTTGCCAA ATTAAATTCC chr3R:17002376-17002496 3 5.48e-05 CT GTTGCCAC CGCCATCGAT chr3L:9461730-9461850 24 5.48e-05 GCCCGCCAGG GTTGCCAA CCTCCTAAAC chr2R:14357265-14357385 109 5.48e-05 GTATTTCGGC GGCGCCAC TTTC chrX:3950222-3950342 87 5.48e-05 TTGAACTCCT GTTGCCAA GCTGCATTTT chr2L:20734269-20734389 20 5.48e-05 CTGTAGCAGC GTTGCCAC CTAGTACAGC chr2R:11970310-11970430 63 5.48e-05 TAAGTTTAGG GTTGCCAA GGCTTGCAAA chr2R:16202916-16203036 9 5.48e-05 CGATCAGT GTTGCCAA TTTAGCTTTC chr2R:12437063-12437183 36 5.48e-05 ACCAGTTACC GTTGCCAC CTTGGTAAAG chr3L:9614100-9614220 77 5.48e-05 ACACTTTTGG GGCGCCAC TAAGGTAAAA chr2R:21313173-21313293 11 5.48e-05 TTCTCACGTA GGCGCCAC ATGTCAATAG chr2R:17545077-17545197 55 8.99e-05 GAATATGCAA GTCGCCAA CCTTGGTGGA chr3R:11628527-11628647 44 8.99e-05 AAGTATCCAA GGTGGCAA TCCTGACATA chr3L:3226240-3226360 84 8.99e-05 CTCGCGACTG GGTGGCAA Cgtgtgtgcg chr2L:203676-203796 48 8.99e-05 GGCTCGACGA GGTGGCAA CGCTAGCCGG chr3R:16482412-16482532 74 8.99e-05 TGAGTTGGCA GGTGGCAA CGTATTAAAA chr2R:21709578-21709698 82 1.52e-04 CTTTTCTTCC GGCGGCAC AGTGAACGCT chr3R:15547939-15548059 62 1.52e-04 GTATGCAGTA GCTGCCAA TGAAATGAAC chrX:16683919-16684039 81 1.52e-04 ACGGCAAGCA GTTGGCAA GCAGTGTCAG chr2R:7636695-7636815 29 1.52e-04 GGGCGATTTG GGCGGCAA AACGCCTGTA chrX:1239878-1239998 58 1.52e-04 GGAACATGAT GGCGGCAA TGAATACGAT chr2R:10838675-10838795 34 1.52e-04 GCCTGCTGGA GCTGCCAC CCAGAAAGGG chrX:18366692-18366812 6 1.52e-04 ACAAA GGCGGCAA CAAGAACAAC chr2R:13968166-13968286 54 1.67e-04 TCCGGCAGAT GGCGCCAG GTGGTTATCC chr3L:7243928-7244048 68 1.67e-04 TGCATTGAGC GTTGCCAG GTGGACTCAC chr2R:11199098-11199218 53 1.67e-04 AAATTAAGCC GGCGCCAG GATACCTGGC chr3R:15293138-15293258 5 1.67e-04 TTCG GTTGCCAG GGCAATAAAA chr3L:9838620-9838740 31 1.98e-04 AAATGAAGAT GCCGCCAA TCAGCTGTCT chr2R:12198844-12198964 112 1.98e-04 AAATGAAACC GCCGCCAA A chr3R:16811799-16811919 70 1.98e-04 CCCCGCAATG GCCGCCAA TGGCTAAGCG chrX:2443942-2444062 23 2.30e-04 CTGTCCTAGA GCTGGCAC AGGTGTCGAT chr3R:5685746-5685866 62 2.30e-04 CTTCCCAGTG GCTGGCAC TCGCAGAAGA chr3L:21445747-21445867 98 2.53e-04 TTTCTCACAA GTTGGCAG TTCCATTCCA chr3R:8301355-8301475 81 2.53e-04 CCGACGAAGA GTTGGCAG TTCTGGCCGG chr2R:16850308-16850428 44 2.53e-04 CATAAAACGA GTTGGCAG GGATGTATCG chr2R:21048312-21048432 32 2.53e-04 TGAGGAGTGC GTTGGCAG CTGCAGCTGC chr3R:18663491-18663611 9 2.66e-04 TACAAATC GCCGGCAA CAAAACGCTG chr3L:11237432-11237552 50 2.87e-04 CCGAGTCCAA GCTGGCAG GTAGGTAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14817990-14818110 1.8e-05 70_[+2]_42 chr2R:14302849-14302969 5.5e-05 95_[+2]_17 chr3L:9456026-9456146 5.5e-05 44_[+2]_68 chr3R:11581507-11581627 5.5e-05 20_[+2]_92 chr2L:1614206-1614326 5.5e-05 48_[+2]_64 chrX:19268761-19268881 5.5e-05 26_[+2]_86 chr3R:17002376-17002496 5.5e-05 2_[+2]_110 chr3L:9461730-9461850 5.5e-05 23_[+2]_89 chr2R:14357265-14357385 5.5e-05 108_[+2]_4 chrX:3950222-3950342 5.5e-05 86_[+2]_26 chr2L:20734269-20734389 5.5e-05 19_[+2]_93 chr2R:11970310-11970430 5.5e-05 62_[+2]_50 chr2R:16202916-16203036 5.5e-05 8_[+2]_104 chr2R:12437063-12437183 5.5e-05 35_[+2]_77 chr3L:9614100-9614220 5.5e-05 76_[+2]_36 chr2R:21313173-21313293 5.5e-05 10_[+2]_102 chr2R:17545077-17545197 9e-05 54_[+2]_58 chr3R:11628527-11628647 9e-05 43_[+2]_69 chr3L:3226240-3226360 9e-05 83_[+2]_29 chr2L:203676-203796 9e-05 47_[+2]_65 chr3R:16482412-16482532 9e-05 73_[+2]_39 chr2R:21709578-21709698 0.00015 81_[+2]_31 chr3R:15547939-15548059 0.00015 61_[+2]_51 chrX:16683919-16684039 0.00015 80_[+2]_32 chr2R:7636695-7636815 0.00015 28_[+2]_84 chrX:1239878-1239998 0.00015 57_[+2]_55 chr2R:10838675-10838795 0.00015 33_[+2]_79 chrX:18366692-18366812 0.00015 5_[+2]_107 chr2R:13968166-13968286 0.00017 53_[+2]_59 chr3L:7243928-7244048 0.00017 67_[+2]_45 chr2R:11199098-11199218 0.00017 52_[+2]_60 chr3R:15293138-15293258 0.00017 4_[+2]_108 chr3L:9838620-9838740 0.0002 30_[+2]_82 chr2R:12198844-12198964 0.0002 111_[+2]_1 chr3R:16811799-16811919 0.0002 69_[+2]_43 chrX:2443942-2444062 0.00023 22_[+2]_90 chr3R:5685746-5685866 0.00023 61_[+2]_51 chr3L:21445747-21445867 0.00025 97_[+2]_15 chr3R:8301355-8301475 0.00025 80_[+2]_32 chr2R:16850308-16850428 0.00025 43_[+2]_69 chr2R:21048312-21048432 0.00025 31_[+2]_81 chr3R:18663491-18663611 0.00027 8_[+2]_104 chr3L:11237432-11237552 0.00029 49_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GBYGSCAM width=8 seqs=43 chr3R:14817990-14818110 ( 71) GGTGCCAA 1 chr2R:14302849-14302969 ( 96) GGCGCCAC 1 chr3L:9456026-9456146 ( 45) GGCGCCAC 1 chr3R:11581507-11581627 ( 21) GTTGCCAC 1 chr2L:1614206-1614326 ( 49) GTTGCCAC 1 chrX:19268761-19268881 ( 27) GTTGCCAA 1 chr3R:17002376-17002496 ( 3) GTTGCCAC 1 chr3L:9461730-9461850 ( 24) GTTGCCAA 1 chr2R:14357265-14357385 ( 109) GGCGCCAC 1 chrX:3950222-3950342 ( 87) GTTGCCAA 1 chr2L:20734269-20734389 ( 20) GTTGCCAC 1 chr2R:11970310-11970430 ( 63) GTTGCCAA 1 chr2R:16202916-16203036 ( 9) GTTGCCAA 1 chr2R:12437063-12437183 ( 36) GTTGCCAC 1 chr3L:9614100-9614220 ( 77) GGCGCCAC 1 chr2R:21313173-21313293 ( 11) GGCGCCAC 1 chr2R:17545077-17545197 ( 55) GTCGCCAA 1 chr3R:11628527-11628647 ( 44) GGTGGCAA 1 chr3L:3226240-3226360 ( 84) GGTGGCAA 1 chr2L:203676-203796 ( 48) GGTGGCAA 1 chr3R:16482412-16482532 ( 74) GGTGGCAA 1 chr2R:21709578-21709698 ( 82) GGCGGCAC 1 chr3R:15547939-15548059 ( 62) GCTGCCAA 1 chrX:16683919-16684039 ( 81) GTTGGCAA 1 chr2R:7636695-7636815 ( 29) GGCGGCAA 1 chrX:1239878-1239998 ( 58) GGCGGCAA 1 chr2R:10838675-10838795 ( 34) GCTGCCAC 1 chrX:18366692-18366812 ( 6) GGCGGCAA 1 chr2R:13968166-13968286 ( 54) GGCGCCAG 1 chr3L:7243928-7244048 ( 68) GTTGCCAG 1 chr2R:11199098-11199218 ( 53) GGCGCCAG 1 chr3R:15293138-15293258 ( 5) GTTGCCAG 1 chr3L:9838620-9838740 ( 31) GCCGCCAA 1 chr2R:12198844-12198964 ( 112) GCCGCCAA 1 chr3R:16811799-16811919 ( 70) GCCGCCAA 1 chrX:2443942-2444062 ( 23) GCTGGCAC 1 chr3R:5685746-5685866 ( 62) GCTGGCAC 1 chr3L:21445747-21445867 ( 98) GTTGGCAG 1 chr3R:8301355-8301475 ( 81) GTTGGCAG 1 chr2R:16850308-16850428 ( 44) GTTGGCAG 1 chr2R:21048312-21048432 ( 32) GTTGGCAG 1 chr3R:18663491-18663611 ( 9) GCCGGCAA 1 chr3L:11237432-11237552 ( 50) GCTGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 2.7e+001 -1207 -1207 225 -1207 -1207 -3 83 52 -1207 80 -1207 111 -1207 -1207 225 -1207 -1207 150 91 -1207 -1207 223 -1207 -1207 181 -1207 -1207 -1207 71 61 0 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.7e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.209302 0.372093 0.418605 0.000000 0.372093 0.000000 0.627907 0.000000 0.000000 1.000000 0.000000 0.000000 0.604651 0.395349 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.465116 0.325581 0.209302 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBYGSCAM MEME-2 regular expression -------------------------------------------------------------------------------- G[TGC][TC]G[CG]CA[ACG] -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGYGCTG MEME-3 width = 8 sites = 38 llr = 318 E-value = 2.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9::2:1: pos.-specific C 8::619:: probability G ::a17::a matrix T 21:3119: bits 2.3 * * 2.0 * * 1.8 * * * 1.6 *** * * Relative 1.4 *** *** Entropy 1.1 *** *** (12.1 bits) 0.9 *** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16170836-16170956 5 1.78e-05 CTAA CAGTGCTG TAAAATGTGT chrX:4116918-4117038 64 1.78e-05 ATGACATGGG CAGTGCTG CGCAGCGTCG chr2L:13829766-13829886 40 1.78e-05 GCTAAGGTAC CAGTGCTG TTACGCACGT chr2R:18660642-18660762 51 1.78e-05 CGCTGCTCTC CAGTGCTG GTTAATTTCC chrX:1477045-1477165 17 1.78e-05 CGAGATAAAC CAGTGCTG TAAAGCGCCG chr3L:19642770-19642890 95 1.78e-05 ACTGTATTTT CAGTGCTG CTAAGTTCTG chr2R:17545077-17545197 24 2.80e-05 TGAATTTGTA CAGCACTG CCAGGCGATA chr3R:16359320-16359440 42 2.80e-05 AATCGATGGG CAGCACTG GTGTGCTCAA chr2L:20734269-20734389 5 2.80e-05 ACGT CAGCACTG TAGCAGCGTT chr3L:5152543-5152663 42 2.80e-05 CTACATTTGA CAGCACTG CGACTTCCGC chr3R:23760561-23760681 24 2.80e-05 AAAAATTACA CAGCACTG GGCTAGTGCA chr3L:14789842-14789962 77 2.80e-05 CGCCGCTGCT CAGCACTG GTGCATTTCG chr3R:18215423-18215543 37 3.54e-05 AACGTAAGAC CAGGGCTG CAACTACGAA chr3L:12115958-12116078 50 3.54e-05 CCATTTTAAC CAGGGCTG CGTATTAATG chr3R:26912832-26912952 69 3.54e-05 GGCGTTGGTA CAGGGCTG CATAGTCACT chrX:8407217-8407337 56 3.54e-05 GGTATTTTTC CAGGGCTG GAAAGTGCTG chr3R:30052538-30052658 88 4.56e-05 CGAGCACTGC TAGCGCTG GCTGGCTCTT chr2R:24964124-24964244 86 4.56e-05 TGTGTCATAT TAGCGCTG GCTTGAtttt chr3R:15989440-15989560 104 4.56e-05 GCCGGCCGAT TAGCGCTG ATCATTGCG chr3L:11237432-11237552 67 4.56e-05 GGTAGGTAGG TAGCGCTG AAATCGATTT chr3R:11628527-11628647 21 5.33e-05 TGCTGCAGTG CAGCCCTG CCAATAAGTA chrX:19268761-19268881 111 5.33e-05 GATGGCGATG CAGCCCTG GC chr2L:5325005-5325125 58 5.33e-05 CGAGAGTTTG CAGCCCTG GTTTACGACA chr3R:20574793-20574913 69 6.72e-05 CTAGCCCTCA CAGTACTG CCAGTCCAGG chr2R:19446271-19446391 46 9.52e-05 GCGTCCCTGG CAGCGCAG TGTTGTCAAT chr2L:18590828-18590948 27 9.52e-05 CCTTTTCGGC CAGCGTTG TAATCTAAGA chr2R:13968166-13968286 74 9.52e-05 GGTTATCCAA CAGCTCTG TTAGTGTGCG chr3L:3037353-3037473 87 9.52e-05 GCACGCTCAC CAGCTCTG GACCGCCCCC chr2L:8841792-8841912 63 9.52e-05 CCTACCCTCC CAGCTCTG AAATACTCCT chr2R:8232401-8232521 103 9.52e-05 TTCACCGCAG CAGCGCAG TTGCGCTCAA chr3R:16240829-16240949 27 9.52e-05 AACAATCAGT CAGCGTTG GTACGCAGCC chr2R:14302849-14302969 62 1.09e-04 TACATTAGCT TAGTGCTG CCGTACTCAC chr2L:1614206-1614326 20 1.09e-04 TATTAGTGTA TAGTGCTG CCAGCTATTT chr3L:18822548-18822668 93 1.17e-04 ACAAATGGAA CTGCGCTG CAGTTGCTTT chr3R:21273770-21273890 57 1.75e-04 CAGAACGGGT CAGTGCAG GTACTACACT chr2R:16322142-16322262 20 1.75e-04 TCGTTATCGG CAGTGTTG GTAAAGGCCC chr3R:16482412-16482532 43 1.75e-04 TTGTCGCAGC CAGTGTTG GCTAACGTCA chr3R:4805088-4805208 71 2.10e-04 ATTGTGCGTG CTGTGCTG TTGGTATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16170836-16170956 1.8e-05 4_[+3]_108 chrX:4116918-4117038 1.8e-05 63_[+3]_49 chr2L:13829766-13829886 1.8e-05 39_[+3]_73 chr2R:18660642-18660762 1.8e-05 50_[+3]_62 chrX:1477045-1477165 1.8e-05 16_[+3]_96 chr3L:19642770-19642890 1.8e-05 94_[+3]_18 chr2R:17545077-17545197 2.8e-05 23_[+3]_89 chr3R:16359320-16359440 2.8e-05 41_[+3]_71 chr2L:20734269-20734389 2.8e-05 4_[+3]_108 chr3L:5152543-5152663 2.8e-05 41_[+3]_71 chr3R:23760561-23760681 2.8e-05 23_[+3]_89 chr3L:14789842-14789962 2.8e-05 76_[+3]_36 chr3R:18215423-18215543 3.5e-05 36_[+3]_76 chr3L:12115958-12116078 3.5e-05 49_[+3]_63 chr3R:26912832-26912952 3.5e-05 68_[+3]_44 chrX:8407217-8407337 3.5e-05 55_[+3]_57 chr3R:30052538-30052658 4.6e-05 87_[+3]_25 chr2R:24964124-24964244 4.6e-05 85_[+3]_27 chr3R:15989440-15989560 4.6e-05 103_[+3]_9 chr3L:11237432-11237552 4.6e-05 66_[+3]_46 chr3R:11628527-11628647 5.3e-05 20_[+3]_92 chrX:19268761-19268881 5.3e-05 110_[+3]_2 chr2L:5325005-5325125 5.3e-05 57_[+3]_55 chr3R:20574793-20574913 6.7e-05 68_[+3]_44 chr2R:19446271-19446391 9.5e-05 45_[+3]_67 chr2L:18590828-18590948 9.5e-05 26_[+3]_86 chr2R:13968166-13968286 9.5e-05 73_[+3]_39 chr3L:3037353-3037473 9.5e-05 86_[+3]_26 chr2L:8841792-8841912 9.5e-05 62_[+3]_50 chr2R:8232401-8232521 9.5e-05 102_[+3]_10 chr3R:16240829-16240949 9.5e-05 26_[+3]_86 chr2R:14302849-14302969 0.00011 61_[+3]_51 chr2L:1614206-1614326 0.00011 19_[+3]_93 chr3L:18822548-18822668 0.00012 92_[+3]_20 chr3R:21273770-21273890 0.00018 56_[+3]_56 chr2R:16322142-16322262 0.00018 19_[+3]_93 chr3R:16482412-16482532 0.00018 42_[+3]_70 chr3R:4805088-4805208 0.00021 70_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGYGCTG width=8 seqs=38 chr2R:16170836-16170956 ( 5) CAGTGCTG 1 chrX:4116918-4117038 ( 64) CAGTGCTG 1 chr2L:13829766-13829886 ( 40) CAGTGCTG 1 chr2R:18660642-18660762 ( 51) CAGTGCTG 1 chrX:1477045-1477165 ( 17) CAGTGCTG 1 chr3L:19642770-19642890 ( 95) CAGTGCTG 1 chr2R:17545077-17545197 ( 24) CAGCACTG 1 chr3R:16359320-16359440 ( 42) CAGCACTG 1 chr2L:20734269-20734389 ( 5) CAGCACTG 1 chr3L:5152543-5152663 ( 42) CAGCACTG 1 chr3R:23760561-23760681 ( 24) CAGCACTG 1 chr3L:14789842-14789962 ( 77) CAGCACTG 1 chr3R:18215423-18215543 ( 37) CAGGGCTG 1 chr3L:12115958-12116078 ( 50) CAGGGCTG 1 chr3R:26912832-26912952 ( 69) CAGGGCTG 1 chrX:8407217-8407337 ( 56) CAGGGCTG 1 chr3R:30052538-30052658 ( 88) TAGCGCTG 1 chr2R:24964124-24964244 ( 86) TAGCGCTG 1 chr3R:15989440-15989560 ( 104) TAGCGCTG 1 chr3L:11237432-11237552 ( 67) TAGCGCTG 1 chr3R:11628527-11628647 ( 21) CAGCCCTG 1 chrX:19268761-19268881 ( 111) CAGCCCTG 1 chr2L:5325005-5325125 ( 58) CAGCCCTG 1 chr3R:20574793-20574913 ( 69) CAGTACTG 1 chr2R:19446271-19446391 ( 46) CAGCGCAG 1 chr2L:18590828-18590948 ( 27) CAGCGTTG 1 chr2R:13968166-13968286 ( 74) CAGCTCTG 1 chr3L:3037353-3037473 ( 87) CAGCTCTG 1 chr2L:8841792-8841912 ( 63) CAGCTCTG 1 chr2R:8232401-8232521 ( 103) CAGCGCAG 1 chr3R:16240829-16240949 ( 27) CAGCGTTG 1 chr2R:14302849-14302969 ( 62) TAGTGCTG 1 chr2L:1614206-1614326 ( 20) TAGTGCTG 1 chr3L:18822548-18822668 ( 93) CTGCGCTG 1 chr3R:21273770-21273890 ( 57) CAGTGCAG 1 chr2R:16322142-16322262 ( 20) CAGTGTTG 1 chr3R:16482412-16482532 ( 43) CAGTGTTG 1 chr3R:4805088-4805208 ( 71) CTGTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 2.1e+002 -1189 198 -1189 -88 173 -1189 -1189 -247 -1189 -1189 225 -1189 -1189 137 -100 23 -63 -144 165 -188 -1189 207 -1189 -147 -185 -1189 -1189 166 -1189 -1189 225 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.1e+002 0.000000 0.842105 0.000000 0.157895 0.947368 0.000000 0.000000 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 0.552632 0.105263 0.342105 0.184211 0.078947 0.657895 0.078947 0.000000 0.894737 0.000000 0.105263 0.078947 0.000000 0.000000 0.921053 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYGCTG MEME-3 regular expression -------------------------------------------------------------------------------- CAG[CT]GCTG -------------------------------------------------------------------------------- Time 19.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGGTAG MEME-4 width = 8 sites = 8 llr = 90 E-value = 8.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :a:::1:: probability G a::aa::a matrix T :::::9:: bits 2.3 ** ** * 2.0 ** ** * 1.8 ***** ** 1.6 ***** ** Relative 1.4 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGGTAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14817990-14818110 14 9.84e-06 GCGAGCGTCG GCAGGTAG GCGAGCACTC chr2R:13019417-13019537 6 9.84e-06 GTTCA GCAGGTAG AAGCCGcaca chr2R:20961143-20961263 53 9.84e-06 AGTTTGGGTT GCAGGTAG CTTTTGGTTT chr3L:3037353-3037473 46 9.84e-06 ttggcttcac GCAGGTAG ACGCTCAACT chr2R:8232401-8232521 49 9.84e-06 cagagctgag gcaggtag gcagCCCAAC chr2R:21048312-21048432 50 9.84e-06 CTGCAGCTGC GCAGGTAG CCAGAAGAGG chr2L:9988306-9988426 97 9.84e-06 GAAAAAGGAC GCAGGTAG GCTAGGATTC chr2R:11182899-11183019 30 1.71e-05 AGCCAGGATC GCAGGCAG CGAGACAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14817990-14818110 9.8e-06 13_[+4]_99 chr2R:13019417-13019537 9.8e-06 5_[+4]_107 chr2R:20961143-20961263 9.8e-06 52_[+4]_60 chr3L:3037353-3037473 9.8e-06 45_[+4]_67 chr2R:8232401-8232521 9.8e-06 48_[+4]_64 chr2R:21048312-21048432 9.8e-06 49_[+4]_63 chr2L:9988306-9988426 9.8e-06 96_[+4]_16 chr2R:11182899-11183019 1.7e-05 29_[+4]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGGTAG width=8 seqs=8 chr3R:14817990-14818110 ( 14) GCAGGTAG 1 chr2R:13019417-13019537 ( 6) GCAGGTAG 1 chr2R:20961143-20961263 ( 53) GCAGGTAG 1 chr3L:3037353-3037473 ( 46) GCAGGTAG 1 chr2R:8232401-8232521 ( 49) GCAGGTAG 1 chr2R:21048312-21048432 ( 50) GCAGGTAG 1 chr2L:9988306-9988426 ( 97) GCAGGTAG 1 chr2R:11182899-11183019 ( 30) GCAGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 8.5e+002 -965 -965 225 -965 -965 223 -965 -965 181 -965 -965 -965 -965 -965 225 -965 -965 -965 225 -965 -965 -77 -965 159 181 -965 -965 -965 -965 -965 225 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.875000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGGTAG MEME-4 regular expression -------------------------------------------------------------------------------- GCAGGTAG -------------------------------------------------------------------------------- Time 25.63 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTACCTG MEME-5 width = 8 sites = 17 llr = 165 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::2 pos.-specific C 3a::aa:: probability G 1::::::8 matrix T 6:a:::a: bits 2.3 * ** 2.0 * ** 1.8 ****** 1.6 ****** Relative 1.4 ******* Entropy 1.1 ******* (14.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTACCTG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14817990-14818110 35 1.45e-05 AGCACTCTCT TCTACctg ctggagcggc chr3R:13812834-13812954 60 1.45e-05 cgagaAATGC TCTACCTG GAAATGAATG chr3R:26023379-26023499 40 1.45e-05 ACAGATCCTC TCTACCTG CCCGATAACT chr3L:11927345-11927465 19 1.45e-05 ATGGGGGCTC TCTACCTG TTGCCGGGTT chr3L:14276206-14276326 94 1.45e-05 GAGCCCGCAT TCTACCTG CCCGCAGCTC chr2R:10583185-10583305 68 1.45e-05 ACGGTTCACC TCTACCTG TGcacaaatc chr3R:15989440-15989560 56 2.51e-05 AAATGGGAAT CCTACCTG AACGGGCAAA chr2L:8166077-8166197 56 2.51e-05 TCTGTATTTT CCTACCTG CTCTTGGCCT chr3R:16886623-16886743 36 2.51e-05 CAGGAGTCGC CCTACCTG TGTGTGCGTG chr2L:8810003-8810123 71 2.51e-05 GGGATGATTG CCTACCTG CGGGACTCTG chr3L:19556819-19556939 54 2.51e-05 CATGCATACG CCTACCTG GACACAGGTA chr3L:9461730-9461850 63 3.55e-05 TGAATAGATC GCTACCTG TTCACGTGTT chr2R:22689724-22689844 103 3.55e-05 ATCGCTGCTC GCTACCTG CGAACGCAAG chr2L:2883289-2883409 4 5.51e-05 TGT TCTACCTA ACTTTTCGCT chr3L:1496573-1496693 85 5.51e-05 CCCAATGCTG TCTACCTA ACACTACTTC chr2R:17548401-17548521 40 5.51e-05 GTGGGAAAAT TCTACCTA AGCAGGGTac chr2R:10485443-10485563 28 5.51e-05 TTTCGGGTTT TCTACCTA AACAGCTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14817990-14818110 1.4e-05 34_[+5]_78 chr3R:13812834-13812954 1.4e-05 59_[+5]_53 chr3R:26023379-26023499 1.4e-05 39_[+5]_73 chr3L:11927345-11927465 1.4e-05 18_[+5]_94 chr3L:14276206-14276326 1.4e-05 93_[+5]_19 chr2R:10583185-10583305 1.4e-05 67_[+5]_45 chr3R:15989440-15989560 2.5e-05 55_[+5]_57 chr2L:8166077-8166197 2.5e-05 55_[+5]_57 chr3R:16886623-16886743 2.5e-05 35_[+5]_77 chr2L:8810003-8810123 2.5e-05 70_[+5]_42 chr3L:19556819-19556939 2.5e-05 53_[+5]_59 chr3L:9461730-9461850 3.6e-05 62_[+5]_50 chr2R:22689724-22689844 3.6e-05 102_[+5]_10 chr2L:2883289-2883409 5.5e-05 3_[+5]_109 chr3L:1496573-1496693 5.5e-05 84_[+5]_28 chr2R:17548401-17548521 5.5e-05 39_[+5]_73 chr2R:10485443-10485563 5.5e-05 27_[+5]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTACCTG width=8 seqs=17 chr3R:14817990-14818110 ( 35) TCTACCTG 1 chr3R:13812834-13812954 ( 60) TCTACCTG 1 chr3R:26023379-26023499 ( 40) TCTACCTG 1 chr3L:11927345-11927465 ( 19) TCTACCTG 1 chr3L:14276206-14276326 ( 94) TCTACCTG 1 chr2R:10583185-10583305 ( 68) TCTACCTG 1 chr3R:15989440-15989560 ( 56) CCTACCTG 1 chr2L:8166077-8166197 ( 56) CCTACCTG 1 chr3R:16886623-16886743 ( 36) CCTACCTG 1 chr2L:8810003-8810123 ( 71) CCTACCTG 1 chr3L:19556819-19556939 ( 54) CCTACCTG 1 chr3L:9461730-9461850 ( 63) GCTACCTG 1 chr2R:22689724-22689844 ( 103) GCTACCTG 1 chr2L:2883289-2883409 ( 4) TCTACCTA 1 chr3L:1496573-1496693 ( 85) TCTACCTA 1 chr2R:17548401-17548521 ( 40) TCTACCTA 1 chr2R:10485443-10485563 ( 28) TCTACCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 1.8e+003 -1073 46 -84 101 -1073 223 -1073 -1073 -1073 -1073 -1073 178 181 -1073 -1073 -1073 -1073 223 -1073 -1073 -1073 223 -1073 -1073 -1073 -1073 -1073 178 -28 -1073 186 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.8e+003 0.000000 0.294118 0.117647 0.588235 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.235294 0.000000 0.764706 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTACCTG MEME-5 regular expression -------------------------------------------------------------------------------- [TC]CTACCT[GA] -------------------------------------------------------------------------------- Time 31.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17801709-17801829 9.33e-01 120 chr3L:14789842-14789962 1.14e-02 76_[+3(2.80e-05)]_36 chr3L:19556819-19556939 9.14e-03 53_[+5(2.51e-05)]_59 chrX:13817517-13817637 6.17e-01 120 chr3L:8175966-8176086 5.71e-01 120 chr3L:630394-630514 9.41e-01 120 chrX:22433029-22433149 9.99e-01 120 chr2R:22689724-22689844 1.65e-02 102_[+5(3.55e-05)]_10 chr3R:23820383-23820503 9.82e-01 120 chr3L:11556609-11556729 9.88e-01 120 chr2L:7443054-7443174 4.88e-01 120 chrX:8407217-8407337 2.95e-04 55_[+3(3.54e-05)]_42_[+1(2.56e-05)]_\ 7 chr2L:8810003-8810123 6.54e-02 70_[+5(2.51e-05)]_42 chr3R:20543393-20543513 2.44e-02 120 chr2L:5325005-5325125 1.19e-03 30_[+1(2.56e-05)]_19_[+3(5.33e-05)]_\ 55 chr2R:12038886-12039006 8.51e-01 120 chr2L:9988306-9988426 5.65e-02 96_[+4(9.84e-06)]_16 chr2R:21048312-21048432 8.22e-04 49_[+4(9.84e-06)]_63 chr2R:21313173-21313293 1.06e-01 10_[+2(5.48e-05)]_102 chrX:18366692-18366812 1.41e-01 120 chr3R:16240829-16240949 9.59e-02 26_[+3(9.52e-05)]_86 chr3R:16886623-16886743 3.87e-02 35_[+5(2.51e-05)]_77 chr2R:9554844-9554964 3.74e-02 120 chr2L:15066236-15066356 5.38e-01 120 chr2R:8232401-8232521 4.17e-04 48_[+4(9.84e-06)]_46_[+3(9.52e-05)]_\ 10 chr3L:9041322-9041442 6.47e-01 120 chrX:6092260-6092380 8.39e-01 120 chr2L:3058933-3059053 4.14e-01 120 chr2R:16850308-16850428 3.74e-03 56_[+1(2.56e-05)]_56 chr3R:16482412-16482532 2.74e-03 70_[+4(8.32e-05)]_42 chr3R:15293138-15293258 1.71e-01 120 chrX:19783671-19783791 6.32e-01 120 chr2R:14882104-14882224 8.04e-01 120 chr2R:23894939-23895059 7.33e-01 120 chr2R:11182899-11183019 6.08e-02 29_[+4(1.71e-05)]_83 chr3L:11324982-11325102 6.68e-01 120 chr2R:10583185-10583305 1.73e-02 67_[+5(1.45e-05)]_45 chr3L:9425951-9426071 5.23e-01 120 chr2R:7653883-7654003 1.39e-01 86_[+1(6.96e-05)]_26 chr3R:18243754-18243874 3.63e-02 120 chr3L:14276206-14276326 3.55e-03 93_[+5(1.45e-05)]_19 chr3L:9614100-9614220 1.25e-02 76_[+2(5.48e-05)]_36 chr2R:22690801-22690921 4.33e-01 120 chr2L:8841792-8841912 4.58e-02 62_[+3(9.52e-05)]_50 chr3L:9004928-9005048 7.59e-01 120 chr2L:3938990-3939110 9.94e-01 120 chr3R:11796930-11797050 1.71e-01 101_[+1(2.56e-05)]_11 chr2R:23656729-23656849 2.47e-01 120 chr3L:3037353-3037473 8.60e-03 45_[+4(9.84e-06)]_33_[+3(9.52e-05)]_\ 26 chr2R:10485443-10485563 2.16e-01 27_[+5(5.51e-05)]_85 chr3R:16811799-16811919 1.84e-01 120 chr2R:18180196-18180316 9.01e-03 82_[+1(2.56e-05)]_30 chr2R:20961143-20961263 1.48e-02 52_[+4(9.84e-06)]_60 chr3L:11237432-11237552 1.64e-05 53_[+4(9.84e-06)]_5_[+3(4.56e-05)]_\ 46 chr2R:10596326-10596446 9.93e-01 120 chr3R:23760561-23760681 2.50e-03 23_[+3(2.80e-05)]_89 chr2R:10838675-10838795 3.61e-02 120 chrX:618662-618782 3.22e-02 120 chr2R:17548401-17548521 6.47e-02 39_[+5(5.51e-05)]_73 chr2L:5225772-5225892 8.92e-01 120 chr3L:11927345-11927465 4.47e-02 18_[+5(1.45e-05)]_94 chr3R:26023379-26023499 1.92e-02 39_[+5(1.45e-05)]_61_[+5(9.79e-05)]_\ 4 chr3R:15347978-15348098 7.84e-01 120 chr2R:12198844-12198964 1.32e-01 120 chr3R:23927608-23927728 1.77e-01 120 chr3L:11243479-11243599 2.80e-01 120 chr3R:23228770-23228890 1.87e-01 120 chrX:17578321-17578441 9.30e-01 120 chr2L:18707972-18708092 1.52e-01 120 chr3L:7760086-7760206 7.47e-01 120 chr2R:16322142-16322262 4.43e-02 120 chr2L:19158005-19158125 9.85e-01 120 chr3L:3818577-3818697 1.19e-01 39_[+1(4.45e-05)]_73 chr2R:24086512-24086632 1.22e-01 52_[+1(2.56e-05)]_10_[+1(2.56e-05)]_\ 42 chr2R:6811143-6811263 5.15e-01 120 chr2R:12437063-12437183 8.90e-02 35_[+2(5.48e-05)]_77 chr2L:8166077-8166197 3.55e-02 55_[+5(2.51e-05)]_57 chr3L:726683-726803 6.67e-01 120 chr3R:4346653-4346773 4.60e-02 34_[+5(8.37e-05)]_78 chrX:11149296-11149416 9.99e-01 120 chr3L:5152543-5152663 4.38e-03 41_[+3(2.80e-05)]_71 chr3R:15989440-15989560 3.18e-03 55_[+5(2.51e-05)]_40_[+3(4.56e-05)]_\ 9 chrX:1858926-1859046 1.92e-01 120 chr3L:19642770-19642890 3.29e-02 94_[+3(1.78e-05)]_18 chr2R:13019417-13019537 4.91e-02 5_[+4(9.84e-06)]_107 chr2R:16202916-16203036 1.38e-02 8_[+2(5.48e-05)]_104 chrX:19762263-19762383 4.70e-01 120 chr2R:10078257-10078377 4.81e-01 120 chr3R:15963815-15963935 2.47e-01 120 chr2L:11199181-11199301 9.99e-02 120 chrX:1239878-1239998 4.35e-01 120 chrX:14580510-14580630 1.52e-01 40_[+1(4.45e-05)]_72 chr3L:8440802-8440922 9.85e-01 120 chr3R:21140523-21140643 9.44e-01 120 chr3R:29116285-29116405 1.07e-01 106_[+1(2.56e-05)]_6 chr2R:11970310-11970430 1.15e-01 62_[+2(5.48e-05)]_50 chr2R:17766866-17766986 7.36e-01 120 chr2R:18846579-18846699 1.44e-01 120 chr2L:2999240-2999360 8.25e-01 120 chr2L:1987906-1988026 9.91e-01 120 chr3L:8720130-8720250 8.73e-01 120 chr3R:31636703-31636823 3.52e-01 120 chr2R:7636695-7636815 1.28e-01 120 chr2L:20734269-20734389 2.65e-03 4_[+3(2.80e-05)]_7_[+2(5.48e-05)]_\ 93 chr3R:18663491-18663611 8.45e-02 120 chrX:16683919-16684039 1.28e-03 7_[+1(2.56e-05)]_105 chr2L:18484737-18484857 9.27e-01 120 chr2R:11199098-11199218 3.45e-02 120 chr2L:10437472-10437592 2.76e-01 120 chr2R:9116478-9116598 4.89e-01 120 chrX:6997190-6997310 2.66e-01 120 chr2L:4031830-4031950 1.53e-01 120 chrX:15462574-15462694 1.45e-02 120 chr3L:10860171-10860291 1.05e-01 120 chr2L:16251928-16252048 7.31e-01 120 chr3R:26912832-26912952 4.31e-02 68_[+3(3.54e-05)]_44 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chr3R:18315380-18315500 8.34e-01 120 chr3L:21516975-21517095 8.31e-01 120 chr3L:5604078-5604198 4.22e-01 120 chr3L:5768985-5769105 8.34e-01 120 chr2R:21090938-21091058 1.83e-01 108_[+1(8.84e-05)]_4 chr3R:8301355-8301475 6.00e-02 120 chr3L:18822548-18822668 7.18e-03 16_[+1(2.56e-05)]_96 chr2R:9544968-9545088 1.04e-01 120 chr3R:16359320-16359440 1.83e-02 41_[+3(2.80e-05)]_71 chr2L:8528472-8528592 1.30e-01 120 chr3R:14479751-14479871 3.49e-01 120 chr2R:7815180-7815300 9.26e-01 120 chr3L:12115958-12116078 8.40e-03 49_[+3(3.54e-05)]_16_[+1(2.56e-05)]_\ 39 chrX:1033223-1033343 5.57e-02 2_[+1(2.56e-05)]_68_[+1(4.45e-05)]_\ 34 chr2L:13829766-13829886 2.82e-04 [+1(2.56e-05)]_31_[+3(1.78e-05)]_73 chr2R:13968166-13968286 1.49e-02 73_[+3(9.52e-05)]_39 chr2L:18590828-18590948 7.76e-03 26_[+3(9.52e-05)]_10_[+1(8.84e-05)]_\ 68 chr3R:13812834-13812954 1.26e-01 59_[+5(1.45e-05)]_53 chrX:9120953-9121073 1.41e-01 78_[+1(4.45e-05)]_34 chrX:9496019-9496139 9.08e-01 120 chrX:10601741-10601861 2.18e-01 120 chr2L:13878975-13879095 7.06e-01 120 chr2L:6907863-6907983 9.57e-01 120 chr3L:3226240-3226360 3.26e-01 83_[+2(8.99e-05)]_29 chrX:20511505-20511625 8.39e-01 120 chr2R:9847846-9847966 9.69e-01 120 chrX:13822209-13822329 7.46e-01 120 chr3R:11581507-11581627 1.88e-03 20_[+2(5.48e-05)]_20_[+1(2.56e-05)]_\ 64 chr3R:15547939-15548059 1.11e-01 120 chr2R:10066636-10066756 7.54e-01 120 chr2L:7412319-7412439 3.30e-01 120 chr2L:20918835-20918955 9.64e-01 120 chr3R:10350104-10350224 7.96e-01 120 chrX:4116918-4117038 9.83e-03 63_[+3(1.78e-05)]_49 chr3R:26280529-26280649 9.12e-01 120 chr3L:9456026-9456146 1.46e-01 44_[+2(5.48e-05)]_68 chr2R:21128450-21128570 7.43e-03 44_[+1(2.56e-05)]_55_[+1(2.56e-05)]_\ 5 chr3R:17078130-17078250 5.95e-01 120 chr3R:27239055-27239175 8.11e-02 91_[+1(2.56e-05)]_21 chr2R:14302849-14302969 4.91e-03 95_[+2(5.48e-05)]_17 chr3R:19094202-19094322 3.50e-02 120 chrX:796469-796589 8.53e-01 120 chr2R:10123681-10123801 9.95e-01 120 chr3R:5685746-5685866 1.27e-01 120 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1.12e-02 36_[+3(3.54e-05)]_76 chr2L:6956900-6957020 2.91e-02 72_[+1(2.56e-05)]_40 chr3R:8801449-8801569 2.17e-01 120 chr3L:18672300-18672420 6.67e-01 120 chr2L:3042304-3042424 5.63e-01 120 chr2L:19397848-19397968 8.38e-01 120 chr3L:16808268-16808388 5.89e-01 120 chr3R:29493402-29493522 6.39e-03 46_[+1(2.56e-05)]_66 chr2R:18277286-18277406 3.23e-01 120 chr2R:17545077-17545197 2.17e-04 23_[+3(2.80e-05)]_23_[+2(8.99e-05)]_\ 58 chr2R:21709578-21709698 5.26e-02 120 chr3R:27677155-27677275 4.30e-02 47_[+1(2.56e-05)]_65 chr3R:26566999-26567119 4.06e-01 120 chr3R:9038825-9038945 3.03e-01 120 chr3R:13030628-13030748 1.76e-01 120 chr3L:17961664-17961784 7.65e-01 120 chr2L:2883289-2883409 1.15e-01 3_[+5(5.51e-05)]_109 chr2L:14359073-14359193 3.21e-01 120 chr2R:16170836-16170956 1.89e-02 4_[+3(1.78e-05)]_108 chr3R:5856338-5856458 5.26e-01 120 chrX:2158953-2159073 2.92e-02 38_[+1(2.56e-05)]_74 chrX:18370849-18370969 2.57e-02 76_[+1(4.45e-05)]_36 chr3R:21273770-21273890 1.38e-03 82_[+1(6.96e-05)]_5_[+1(6.96e-05)]_\ 17 chr3L:15565930-15566050 2.91e-01 120 chr3R:20574793-20574913 8.16e-02 68_[+3(6.72e-05)]_44 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************