******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/unpg.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:8765573-8765693 1.0000 120 chrX:7706449-7706569 1.0000 120 chrX:3109022-3109142 1.0000 120 chr2R:8759589-8759709 1.0000 120 chr3R:15366998-15367118 1.0000 120 chr2L:18694851-18694971 1.0000 120 chr2L:2374089-2374209 1.0000 120 chr3R:10681706-10681826 1.0000 120 chr2R:8734626-8734746 1.0000 120 chr2L:14405184-14405304 1.0000 120 chr2R:7896307-7896427 1.0000 120 chr2R:7241740-7241860 1.0000 120 chr3L:4603572-4603692 1.0000 120 chrX:6982226-6982346 1.0000 120 chr3L:12223110-12223230 1.0000 120 chr3L:3786960-3787080 1.0000 120 chr2L:7150896-7151016 1.0000 120 chr3R:13907818-13907938 1.0000 120 chr3L:3382010-3382130 1.0000 120 chr3R:28904333-28904453 1.0000 120 chr3L:19263561-19263681 1.0000 120 chr3R:21834378-21834498 1.0000 120 chr3L:6086138-6086258 1.0000 120 chrX:13109855-13109975 1.0000 120 chr3R:29699357-29699477 1.0000 120 chr2R:11426857-11426977 1.0000 120 chrX:5989490-5989610 1.0000 120 chrX:6542457-6542577 1.0000 120 chr3R:23921825-23921945 1.0000 120 chr3R:25445644-25445764 1.0000 120 chr3R:25630711-25630831 1.0000 120 chrX:9352832-9352952 1.0000 120 chr3R:26801559-26801679 1.0000 120 chr2L:1655954-1656074 1.0000 120 chr2R:8659679-8659799 1.0000 120 chr2L:8552606-8552726 1.0000 120 chr2L:13258860-13258980 1.0000 120 chr3R:16510316-16510436 1.0000 120 chrX:14679302-14679422 1.0000 120 chr2L:14252586-14252706 1.0000 120 chrX:7975992-7976112 1.0000 120 chr3R:11809786-11809906 1.0000 120 chr3L:12050775-12050895 1.0000 120 chr3L:6817104-6817224 1.0000 120 chr3R:29717665-29717785 1.0000 120 chr3R:22121369-22121489 1.0000 120 chr3L:19338390-19338510 1.0000 120 chr2L:493390-493510 1.0000 120 chr3R:12961076-12961196 1.0000 120 chr3L:13356155-13356275 1.0000 120 chrX:12241200-12241320 1.0000 120 chr3L:16045421-16045541 1.0000 120 chrX:13817583-13817703 1.0000 120 chr3R:23387078-23387198 1.0000 120 chrX:14243216-14243336 1.0000 120 chrX:9350420-9350540 1.0000 120 chr3L:110099-110219 1.0000 120 chr2L:11331792-11331912 1.0000 120 chr2L:12046716-12046836 1.0000 120 chr3L:16289215-16289335 1.0000 120 chr3R:13446622-13446742 1.0000 120 chrX:3396987-3397107 1.0000 120 chr2L:7566786-7566906 1.0000 120 chr3L:9424629-9424749 1.0000 120 chr3R:8469866-8469986 1.0000 120 chr3R:14095559-14095679 1.0000 120 chr3R:12406336-12406456 1.0000 120 chrX:10233252-10233372 1.0000 120 chr2L:11199225-11199345 1.0000 120 chrX:11848798-11848918 1.0000 120 chr3R:14598093-14598213 1.0000 120 chr2L:7541461-7541581 1.0000 120 chr3L:10428223-10428343 1.0000 120 chr2L:11394247-11394367 1.0000 120 chr3L:18786179-18786299 1.0000 120 chrX:10573658-10573778 1.0000 120 chr3R:11852053-11852173 1.0000 120 chr2R:13996676-13996796 1.0000 120 chr2R:7141905-7142025 1.0000 120 chr2R:12547683-12547803 1.0000 120 chr2L:14245617-14245737 1.0000 120 chr3L:19216553-19216673 1.0000 120 chr3R:26436692-26436812 1.0000 120 chr2L:10543528-10543648 1.0000 120 chrX:14840652-14840772 1.0000 120 chr3R:26333436-26333556 1.0000 120 chr3R:13549696-13549816 1.0000 120 chr2R:13261816-13261936 1.0000 120 chr3R:13793476-13793596 1.0000 120 chr3R:8964047-8964167 1.0000 120 chr3R:10688979-10689099 1.0000 120 chr2L:7395925-7396045 1.0000 120 chr3L:7592290-7592410 1.0000 120 chr3L:7367941-7368061 1.0000 120 chr3R:30789551-30789671 1.0000 120 chrX:17696797-17696917 1.0000 120 chr2R:21527426-21527546 1.0000 120 chr3L:22276802-22276922 1.0000 120 chr3L:4615211-4615331 1.0000 120 chr3R:15117852-15117972 1.0000 120 chrX:19352919-19353039 1.0000 120 chr2R:12727655-12727775 1.0000 120 chrX:19348935-19349055 1.0000 120 chrX:2396629-2396749 1.0000 120 chrX:16854870-16854990 1.0000 120 chr2R:14576114-14576234 1.0000 120 chr3L:17310651-17310771 1.0000 120 chr3L:1151782-1151902 1.0000 120 chr3R:18242162-18242282 1.0000 120 chr2L:16869086-16869206 1.0000 120 chr3R:19014935-19015055 1.0000 120 chrX:7617050-7617170 1.0000 120 chr2R:21709646-21709766 1.0000 120 chr2R:21364780-21364900 1.0000 120 chr2L:8080799-8080919 1.0000 120 chrX:17782149-17782269 1.0000 120 chr3R:18393604-18393724 1.0000 120 chr3L:721112-721232 1.0000 120 chr3L:3395494-3395614 1.0000 120 chr3L:20276769-20276889 1.0000 120 chr2L:3587428-3587548 1.0000 120 chr3L:22471732-22471852 1.0000 120 chrX:13764506-13764626 1.0000 120 chrX:771812-771932 1.0000 120 chr2L:8554334-8554454 1.0000 120 chr2R:11435220-11435340 1.0000 120 chr2L:7270413-7270533 1.0000 120 chr3L:18349406-18349526 1.0000 120 chr3L:14411037-14411157 1.0000 120 chrX:10718045-10718165 1.0000 120 chr3L:6189167-6189287 1.0000 120 chr3L:18402733-18402853 1.0000 120 chrX:9664560-9664680 1.0000 120 chr3R:30134808-30134928 1.0000 120 chr2L:3851437-3851557 1.0000 120 chr2R:10123700-10123820 1.0000 120 chrX:3019746-3019866 1.0000 120 chr3R:22536585-22536705 1.0000 120 chr3R:13799720-13799840 1.0000 120 chr2R:14161302-14161422 1.0000 120 chr3L:10745716-10745836 1.0000 120 chr3R:23293550-23293670 1.0000 120 chr2L:8746415-8746535 1.0000 120 chr3L:21047137-21047257 1.0000 120 chr3R:29690582-29690702 1.0000 120 chr3R:14470738-14470858 1.0000 120 chr2R:19860384-19860504 1.0000 120 chr3R:23969544-23969664 1.0000 120 chrX:11379323-11379443 1.0000 120 chr2L:14441034-14441154 1.0000 120 chr3R:10636182-10636302 1.0000 120 chr2L:3507611-3507731 1.0000 120 chr3R:31060395-31060515 1.0000 120 chr2L:9235694-9235814 1.0000 120 chr3R:8849478-8849598 1.0000 120 chr2L:10760723-10760843 1.0000 120 chr3L:5926067-5926187 1.0000 120 chr3R:28677018-28677138 1.0000 120 chr3R:15652758-15652878 1.0000 120 chr3L:7861161-7861281 1.0000 120 chr2L:8982741-8982861 1.0000 120 chr3L:18297495-18297615 1.0000 120 chr2L:21149288-21149408 1.0000 120 chr2R:12644277-12644397 1.0000 120 chr3R:16769551-16769671 1.0000 120 chr3R:26888494-26888614 1.0000 120 chrX:8542120-8542240 1.0000 120 chr3L:11552040-11552160 1.0000 120 chr3L:20517051-20517171 1.0000 120 chrX:14743905-14744025 1.0000 120 chrX:16944142-16944262 1.0000 120 chr3R:8744350-8744470 1.0000 120 chr3R:8354554-8354674 1.0000 120 chr2R:20252198-20252318 1.0000 120 chr3R:26106003-26106123 1.0000 120 chrX:5639213-5639333 1.0000 120 chr3L:8604379-8604499 1.0000 120 chrX:12242499-12242619 1.0000 120 chr3R:8955016-8955136 1.0000 120 chr3R:30812617-30812737 1.0000 120 chr3L:11334118-11334238 1.0000 120 chr2L:15442321-15442441 1.0000 120 chr2L:15908587-15908707 1.0000 120 chr3R:16837965-16838085 1.0000 120 chr3L:9508804-9508924 1.0000 120 chr3R:8867839-8867959 1.0000 120 chrX:8271748-8271868 1.0000 120 chr2L:17583109-17583229 1.0000 120 chrX:16822208-16822328 1.0000 120 chr3R:26012915-26013035 1.0000 120 chr2L:14701631-14701751 1.0000 120 chr3R:11617502-11617622 1.0000 120 chr3R:10140427-10140547 1.0000 120 chr3R:26117751-26117871 1.0000 120 chr2L:11189262-11189382 1.0000 120 chrX:8445032-8445152 1.0000 120 chr2L:18377277-18377397 1.0000 120 chr3L:11398800-11398920 1.0000 120 chr3R:31687920-31688040 1.0000 120 chr2L:15254392-15254512 1.0000 120 chr2R:19389477-19389597 1.0000 120 chrX:12454500-12454620 1.0000 120 chr2L:1428511-1428631 1.0000 120 chr2L:11417618-11417738 1.0000 120 chr3L:12271359-12271479 1.0000 120 chr3L:1216605-1216725 1.0000 120 chrX:10582199-10582319 1.0000 120 chr3R:24010950-24011070 1.0000 120 chr3L:20471120-20471240 1.0000 120 chr3L:15999762-15999882 1.0000 120 chrX:14169227-14169347 1.0000 120 chr3R:8171628-8171748 1.0000 120 chr2L:18900016-18900136 1.0000 120 chr2L:14519351-14519471 1.0000 120 chr3R:26014397-26014517 1.0000 120 chrX:18921076-18921196 1.0000 120 chr3R:11661870-11661990 1.0000 120 chr3R:5076292-5076412 1.0000 120 chr3R:28570952-28571072 1.0000 120 chrX:17737981-17738101 1.0000 120 chrX:10067667-10067787 1.0000 120 chr3L:15691354-15691474 1.0000 120 chr2L:3003534-3003654 1.0000 120 chr3R:17584192-17584312 1.0000 120 chr2R:11809471-11809591 1.0000 120 chr2L:18328866-18328986 1.0000 120 chr2L:9207179-9207299 1.0000 120 chr3R:19831094-19831214 1.0000 120 chr2L:16709744-16709864 1.0000 120 chrX:16834408-16834528 1.0000 120 chr2L:15061469-15061589 1.0000 120 chr2L:8602743-8602863 1.0000 120 chr2R:19146104-19146224 1.0000 120 chr3R:8960476-8960596 1.0000 120 chr3R:5636890-5637010 1.0000 120 chr2L:5238317-5238437 1.0000 120 chr3R:26444260-26444380 1.0000 120 chrX:13757005-13757125 1.0000 120 chr3L:2159038-2159158 1.0000 120 chr3R:16496343-16496463 1.0000 120 chr3R:8673951-8674071 1.0000 120 chr3L:18784688-18784808 1.0000 120 chr3L:10206324-10206444 1.0000 120 chr3L:797050-797170 1.0000 120 chr2L:16647861-16647981 1.0000 120 chr3R:16771755-16771875 1.0000 120 chr2R:14909973-14910093 1.0000 120 chr3R:6468138-6468258 1.0000 120 chr3R:30413951-30414071 1.0000 120 chr3L:13923427-13923547 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_unpg/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/unpg.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.37 C 0.131 G 0.133 T 0.366 Background letter frequencies (from file dataset with add-one prior applied): A 0.37 C 0.131 G 0.133 T 0.366 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCAMYKSC MEME-1 width = 8 sites = 27 llr = 245 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::93:1:: pos.-specific C 67:54:5a probability G 4312:55: matrix T ::::64:: bits 2.9 * 2.6 * 2.3 * 2.1 ** ** Relative 1.8 ** ** Entropy 1.5 ** ** (13.1 bits) 1.2 *** * ** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCACTGCC consensus GG ACTG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10233252-10233372 63 1.01e-06 TACTTTACAA GCACCGCC CTTTTTTATT chrX:12241200-12241320 58 1.01e-06 TATCCCCGTT GCACCGGC AAATCCACCT chr2L:13258860-13258980 62 2.92e-06 TGATGAGATT CCACTGGC AACATTGCGT chr3L:6086138-6086258 36 2.92e-06 AAAGGATTAT CCACTGCC TTAAAAAATT chr3L:20517051-20517171 19 1.03e-05 ACGATCACAC CCAACGCC TCTTATATCA chr3R:28677018-28677138 108 1.03e-05 ATTTTTCATG CCAACGCC CATGT chr3L:3395494-3395614 75 1.17e-05 TTCTCCCAGT GCACCTGC CTCTGTGTTG chr3L:3382010-3382130 6 1.36e-05 GATTT CGACTGGC CCATACACAA chr3R:31060395-31060515 25 1.91e-05 TCCGCTTTGC CCACTTCC TCTGCTGGCG chr3R:18242162-18242282 18 1.91e-05 GCCAAAATAA CCACTTCC GGACTTCGAA chr2L:12046716-12046836 108 1.91e-05 ATCGGTTGAC CCACTTCC CTCCC chr2R:21709646-21709766 12 2.40e-05 TGCTTTTCTT CCGGCGGC ACAGTGAACG chr3L:5926067-5926187 6 3.53e-05 TAGGT GCAGCTGC ATATTCAAAT chr3L:8765573-8765693 25 3.53e-05 TCGCATGGGA GCACTTGC AACTTGCAAT chr2L:21149288-21149408 7 4.88e-05 tgcttg ggacctgc gagtttaaga chr2L:14701631-14701751 33 5.28e-05 TTGGTGCTTT GCAATGGC TAGCAATCTT chr3L:12050775-12050895 10 5.28e-05 AAGCTTAAA GCAATGCC ATTTAAAATA chr2L:15061469-15061589 12 5.42e-05 GTTAAAAATG CCACCACC ATCTTTACAT chr3L:14411037-14411157 85 5.42e-05 GTCCATAGCT CCACCACC GAACGTTTAC chr3R:28570952-28571072 108 6.07e-05 ACTCGACAGC CGAGCTCC AGCTC chr3R:31687920-31688040 19 7.21e-05 AAACAAGAGT GCAGTTCC TTGTAACTTT chr3L:22276802-22276922 102 7.21e-05 GGACGGAACT GCAGTTGC ATTGCGAGGA chr3L:18784688-18784808 72 7.28e-05 atttttcata cgggcggc cacccctttt chr2L:17583109-17583229 108 8.01e-05 ATTACTACCT CGAATGCC TTTTA chrX:12242499-12242619 110 8.01e-05 AGTTTTGTTA CGAATGGC CCC chrX:16854870-16854990 8 8.01e-05 GCAAGTG CGAATGCC AAAATAGGAT chr3R:11661870-11661990 70 9.74e-05 AATCAAAACT CCAATTGC GCGATGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10233252-10233372 1e-06 62_[+1]_50 chrX:12241200-12241320 1e-06 57_[+1]_55 chr2L:13258860-13258980 2.9e-06 61_[+1]_51 chr3L:6086138-6086258 2.9e-06 35_[+1]_77 chr3L:20517051-20517171 1e-05 18_[+1]_94 chr3R:28677018-28677138 1e-05 107_[+1]_5 chr3L:3395494-3395614 1.2e-05 74_[+1]_38 chr3L:3382010-3382130 1.4e-05 5_[+1]_107 chr3R:31060395-31060515 1.9e-05 24_[+1]_88 chr3R:18242162-18242282 1.9e-05 17_[+1]_95 chr2L:12046716-12046836 1.9e-05 107_[+1]_5 chr2R:21709646-21709766 2.4e-05 11_[+1]_101 chr3L:5926067-5926187 3.5e-05 5_[+1]_107 chr3L:8765573-8765693 3.5e-05 24_[+1]_88 chr2L:21149288-21149408 4.9e-05 6_[+1]_106 chr2L:14701631-14701751 5.3e-05 32_[+1]_80 chr3L:12050775-12050895 5.3e-05 9_[+1]_103 chr2L:15061469-15061589 5.4e-05 11_[+1]_101 chr3L:14411037-14411157 5.4e-05 84_[+1]_28 chr3R:28570952-28571072 6.1e-05 107_[+1]_5 chr3R:31687920-31688040 7.2e-05 18_[+1]_94 chr3L:22276802-22276922 7.2e-05 101_[+1]_11 chr3L:18784688-18784808 7.3e-05 71_[+1]_41 chr2L:17583109-17583229 8e-05 107_[+1]_5 chrX:12242499-12242619 8e-05 109_[+1]_3 chrX:16854870-16854990 8e-05 7_[+1]_105 chr3R:11661870-11661990 9.7e-05 69_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCAMYKSC width=8 seqs=27 chrX:10233252-10233372 ( 63) GCACCGCC 1 chrX:12241200-12241320 ( 58) GCACCGGC 1 chr2L:13258860-13258980 ( 62) CCACTGGC 1 chr3L:6086138-6086258 ( 36) CCACTGCC 1 chr3L:20517051-20517171 ( 19) CCAACGCC 1 chr3R:28677018-28677138 ( 108) CCAACGCC 1 chr3L:3395494-3395614 ( 75) GCACCTGC 1 chr3L:3382010-3382130 ( 6) CGACTGGC 1 chr3R:31060395-31060515 ( 25) CCACTTCC 1 chr3R:18242162-18242282 ( 18) CCACTTCC 1 chr2L:12046716-12046836 ( 108) CCACTTCC 1 chr2R:21709646-21709766 ( 12) CCGGCGGC 1 chr3L:5926067-5926187 ( 6) GCAGCTGC 1 chr3L:8765573-8765693 ( 25) GCACTTGC 1 chr2L:21149288-21149408 ( 7) GGACCTGC 1 chr2L:14701631-14701751 ( 33) GCAATGGC 1 chr3L:12050775-12050895 ( 10) GCAATGCC 1 chr2L:15061469-15061589 ( 12) CCACCACC 1 chr3L:14411037-14411157 ( 85) CCACCACC 1 chr3R:28570952-28571072 ( 108) CGAGCTCC 1 chr3R:31687920-31688040 ( 19) GCAGTTCC 1 chr3L:22276802-22276922 ( 102) GCAGTTGC 1 chr3L:18784688-18784808 ( 72) CGGGCGGC 1 chr2L:17583109-17583229 ( 108) CGAATGCC 1 chrX:12242499-12242619 ( 110) CGAATGGC 1 chrX:16854870-16854990 ( 8) CGAATGCC 1 chr3R:11661870-11661990 ( 70) CCAATTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 2.3e+001 -1140 226 148 -1140 -1140 250 96 -1140 132 -1140 -84 -1140 -32 188 74 -1140 -1140 176 -1140 60 -232 -1140 196 16 -1140 198 186 -1140 -1140 293 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.3e+001 0.000000 0.629630 0.370370 0.000000 0.000000 0.740741 0.259259 0.000000 0.925926 0.000000 0.074074 0.000000 0.296296 0.481481 0.222222 0.000000 0.000000 0.444444 0.000000 0.555556 0.074074 0.000000 0.518519 0.407407 0.000000 0.518519 0.481481 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCAMYKSC MEME-1 regular expression -------------------------------------------------------------------------------- [CG][CG]A[CAG][TC][GT][CG]C -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSGTSGG MEME-2 width = 8 sites = 10 llr = 112 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C :a62:5:1 probability G a:48:479 matrix T ::::813: bits 2.9 ** 2.6 ** 2.3 ** * 2.1 **** * Relative 1.8 **** * Entropy 1.5 **** *** (16.2 bits) 1.2 **** *** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCCGTCGG consensus GCAGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14411037-14411157 68 2.57e-07 ATGAATACAC GCCGTCGG TCCATAGCTC chr2R:19389477-19389597 83 1.05e-06 CAATTTGGTT GCGGTGGG TCTGAAATCA chr2L:7150896-7151016 2 1.05e-06 T GCGGTGGG CATACTAGCA chr3L:22276802-22276922 90 2.60e-06 TGTGCAGGCG GCGGACGG AACTGCAGTT chr3R:10681706-10681826 108 3.57e-06 CCAGTTAATT GCCGTCTG TGCGT chrX:10582199-10582319 25 4.56e-06 atccaACACG GCCGTGTG TGTCTGTCTG chr3L:4615211-4615331 105 4.56e-06 AGCTCCATCC GCCGTGTG TGTTAATT chr3R:11617502-11617622 108 7.50e-06 ACTCGTTTTA GCCGTTGG CCAGC chr3L:721112-721232 38 9.27e-06 ATTTTAAATA GCGCACGG ATGTTAAGAA chr3L:8765573-8765693 11 1.33e-05 CTATTTTTAG GCCCTCGC ATGGGAGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14411037-14411157 2.6e-07 67_[+2]_45 chr2R:19389477-19389597 1e-06 82_[+2]_30 chr2L:7150896-7151016 1e-06 1_[+2]_111 chr3L:22276802-22276922 2.6e-06 89_[+2]_23 chr3R:10681706-10681826 3.6e-06 107_[+2]_5 chrX:10582199-10582319 4.6e-06 24_[+2]_88 chr3L:4615211-4615331 4.6e-06 104_[+2]_8 chr3R:11617502-11617622 7.5e-06 107_[+2]_5 chr3L:721112-721232 9.3e-06 37_[+2]_75 chr3L:8765573-8765693 1.3e-05 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSGTSGG width=8 seqs=10 chr3L:14411037-14411157 ( 68) GCCGTCGG 1 chr2R:19389477-19389597 ( 83) GCGGTGGG 1 chr2L:7150896-7151016 ( 2) GCGGTGGG 1 chr3L:22276802-22276922 ( 90) GCGGACGG 1 chr3R:10681706-10681826 ( 108) GCCGTCTG 1 chrX:10582199-10582319 ( 25) GCCGTGTG 1 chr3L:4615211-4615331 ( 105) GCCGTGTG 1 chr3R:11617502-11617622 ( 108) GCCGTTGG 1 chr3L:721112-721232 ( 38) GCGCACGG 1 chr3L:8765573-8765693 ( 11) GCCCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 2.2e+001 -997 -997 291 -997 -997 293 -997 -997 -997 219 159 -997 -997 61 259 -997 -89 -997 -997 113 -997 193 159 -187 -997 -997 239 -29 -997 -39 276 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.500000 0.400000 0.100000 0.000000 0.000000 0.700000 0.300000 0.000000 0.100000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSGTSGG MEME-2 regular expression -------------------------------------------------------------------------------- GC[CG][GC][TA][CG][GT]G -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CKCCGCGG MEME-3 width = 8 sites = 2 llr = 30 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:a:: probability G :5::a:aa matrix T :5:::::: bits 2.9 * ****** 2.6 * ****** 2.3 * ****** 2.1 * ****** Relative 1.8 * ****** Entropy 1.5 * ****** (21.6 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCCGCGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17737981-17738101 75 9.21e-08 TGTTCTTTTT CGCCGCGG TAGCTATCAT chrX:7617050-7617170 78 3.46e-07 catttttTTG CTCCGCGG TCTTGCAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17737981-17738101 9.2e-08 74_[+3]_38 chrX:7617050-7617170 3.5e-07 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKCCGCGG width=8 seqs=2 chrX:17737981-17738101 ( 75) CGCCGCGG 1 chrX:7617050-7617170 ( 78) CTCCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+003 -765 292 -765 -765 -765 -765 190 45 -765 292 -765 -765 -765 292 -765 -765 -765 -765 290 -765 -765 292 -765 -765 -765 -765 290 -765 -765 -765 290 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKCCGCGG MEME-3 regular expression -------------------------------------------------------------------------------- C[GT]CCGCGG -------------------------------------------------------------------------------- Time 20.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGGCG MEME-4 width = 8 sites = 4 llr = 52 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C ::a:3:a: probability G :a::8a:a matrix T a::8:::: bits 2.9 ** *** 2.6 ** *** 2.3 ** *** 2.1 ** **** Relative 1.8 ** **** Entropy 1.5 *** **** (18.8 bits) 1.2 *** **** 0.9 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCTGGCG consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31060395-31060515 35 7.19e-07 CCACTTCCTC TGCTGGCG ACGCTGCTTT chr3L:7367941-7368061 27 7.19e-07 CAGAACGCGC TGCTGGCG CTTCTTCACC chr2L:18694851-18694971 41 1.43e-06 GTCCATACTT TGCTCGCG AATTATTACA chr3L:22276802-22276922 82 2.15e-06 TTGCATATTG TGCAGGCG GCGGACGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31060395-31060515 7.2e-07 34_[+4]_78 chr3L:7367941-7368061 7.2e-07 26_[+4]_86 chr2L:18694851-18694971 1.4e-06 40_[+4]_72 chr3L:22276802-22276922 2.2e-06 81_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGGCG width=8 seqs=4 chr3R:31060395-31060515 ( 35) TGCTGGCG 1 chr3L:7367941-7368061 ( 27) TGCTGGCG 1 chr2L:18694851-18694971 ( 41) TGCTCGCG 1 chr3L:22276802-22276922 ( 82) TGCAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 4.0e+003 -865 -865 -865 145 -865 -865 291 -865 -865 293 -865 -865 -56 -865 -865 103 -865 93 249 -865 -865 -865 291 -865 -865 293 -865 -865 -865 -865 291 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-4 regular expression -------------------------------------------------------------------------------- TGC[TA][GC]GCG -------------------------------------------------------------------------------- Time 26.17 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACACSC MEME-5 width = 8 sites = 2 llr = 27 E-value = 7.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:a::: pos.-specific C aa:a:a5a probability G ::::::5: matrix T :::::::: bits 2.9 ** * * * 2.6 ** * * * 2.3 ** * * * 2.1 ** * *** Relative 1.8 ** * *** Entropy 1.5 ******** (19.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCACACCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8659679-8659799 104 6.92e-07 AATATTCAAA CCACACCC ATGTGCGGA chrX:17782149-17782269 19 1.39e-06 TAATTTTATA CCACACGC CAAAAATCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8659679-8659799 6.9e-07 103_[+5]_9 chrX:17782149-17782269 1.4e-06 18_[+5]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACACSC width=8 seqs=2 chr2R:8659679-8659799 ( 104) CCACACCC 1 chrX:17782149-17782269 ( 19) CCACACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 7.0e+003 -765 292 -765 -765 -765 292 -765 -765 143 -765 -765 -765 -765 292 -765 -765 143 -765 -765 -765 -765 292 -765 -765 -765 193 190 -765 -765 292 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.0e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACACSC MEME-5 regular expression -------------------------------------------------------------------------------- CCACAC[CG]C -------------------------------------------------------------------------------- Time 32.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8765573-8765693 1.12e-04 10_[+2(1.33e-05)]_6_[+1(3.53e-05)]_\ 88 chrX:7706449-7706569 5.83e-01 120 chrX:3109022-3109142 2.38e-01 120 chr2R:8759589-8759709 3.46e-01 120 chr3R:15366998-15367118 1.00e+00 120 chr2L:18694851-18694971 6.59e-03 40_[+4(1.43e-06)]_72 chr2L:2374089-2374209 9.93e-01 120 chr3R:10681706-10681826 4.05e-03 107_[+2(3.57e-06)]_5 chr2R:8734626-8734746 3.90e-01 120 chr2L:14405184-14405304 2.27e-02 120 chr2R:7896307-7896427 9.80e-01 120 chr2R:7241740-7241860 7.12e-01 120 chr3L:4603572-4603692 9.04e-01 120 chrX:6982226-6982346 9.58e-01 120 chr3L:12223110-12223230 7.81e-01 120 chr3L:3786960-3787080 8.04e-01 120 chr2L:7150896-7151016 1.37e-03 1_[+2(1.05e-06)]_111 chr3R:13907818-13907938 2.12e-01 120 chr3L:3382010-3382130 3.67e-03 5_[+1(1.36e-05)]_107 chr3R:28904333-28904453 9.93e-01 120 chr3L:19263561-19263681 7.32e-01 120 chr3R:21834378-21834498 2.78e-01 120 chr3L:6086138-6086258 1.42e-03 35_[+1(2.92e-06)]_77 chrX:13109855-13109975 9.69e-01 120 chr3R:29699357-29699477 9.98e-01 120 chr2R:11426857-11426977 2.97e-01 120 chrX:5989490-5989610 3.67e-01 120 chrX:6542457-6542577 1.00e+00 120 chr3R:23921825-23921945 4.51e-01 120 chr3R:25445644-25445764 1.00e+00 120 chr3R:25630711-25630831 9.95e-01 120 chrX:9352832-9352952 7.21e-01 120 chr3R:26801559-26801679 9.85e-01 120 chr2L:1655954-1656074 7.20e-01 120 chr2R:8659679-8659799 9.66e-04 103_[+5(6.92e-07)]_9 chr2L:8552606-8552726 9.61e-01 120 chr2L:13258860-13258980 4.65e-04 61_[+1(2.92e-06)]_51 chr3R:16510316-16510436 9.40e-01 120 chrX:14679302-14679422 9.96e-01 120 chr2L:14252586-14252706 5.94e-01 120 chrX:7975992-7976112 2.29e-01 120 chr3R:11809786-11809906 4.38e-02 120 chr3L:12050775-12050895 2.63e-01 9_[+1(5.28e-05)]_103 chr3L:6817104-6817224 8.29e-01 120 chr3R:29717665-29717785 1.15e-01 120 chr3R:22121369-22121489 9.58e-01 120 chr3L:19338390-19338510 1.00e+00 120 chr2L:493390-493510 6.82e-02 120 chr3R:12961076-12961196 2.57e-01 120 chr3L:13356155-13356275 2.72e-02 120 chrX:12241200-12241320 2.79e-05 57_[+1(1.01e-06)]_4_[+1(4.81e-06)]_\ 43 chr3L:16045421-16045541 7.30e-02 120 chrX:13817583-13817703 9.54e-01 120 chr3R:23387078-23387198 9.62e-01 120 chrX:14243216-14243336 1.00e+00 120 chrX:9350420-9350540 7.03e-01 120 chr3L:110099-110219 7.04e-01 120 chr2L:11331792-11331912 9.75e-01 120 chr2L:12046716-12046836 5.43e-03 107_[+1(1.91e-05)]_5 chr3L:16289215-16289335 2.55e-01 120 chr3R:13446622-13446742 4.99e-01 120 chrX:3396987-3397107 9.99e-01 120 chr2L:7566786-7566906 1.55e-01 120 chr3L:9424629-9424749 2.43e-01 120 chr3R:8469866-8469986 9.80e-01 120 chr3R:14095559-14095679 9.99e-01 120 chr3R:12406336-12406456 5.79e-01 120 chrX:10233252-10233372 1.96e-04 62_[+1(1.01e-06)]_50 chr2L:11199225-11199345 1.20e-01 120 chrX:11848798-11848918 8.13e-01 120 chr3R:14598093-14598213 9.10e-01 120 chr2L:7541461-7541581 9.90e-01 120 chr3L:10428223-10428343 8.51e-01 120 chr2L:11394247-11394367 7.33e-01 120 chr3L:18786179-18786299 6.35e-01 120 chrX:10573658-10573778 3.36e-01 120 chr3R:11852053-11852173 9.38e-01 120 chr2R:13996676-13996796 9.88e-01 120 chr2R:7141905-7142025 9.47e-01 120 chr2R:12547683-12547803 7.98e-01 120 chr2L:14245617-14245737 3.82e-01 120 chr3L:19216553-19216673 5.17e-01 120 chr3R:26436692-26436812 9.80e-01 120 chr2L:10543528-10543648 6.49e-01 120 chrX:14840652-14840772 8.67e-01 120 chr3R:26333436-26333556 6.06e-01 120 chr3R:13549696-13549816 7.32e-01 120 chr2R:13261816-13261936 4.32e-01 120 chr3R:13793476-13793596 9.89e-01 120 chr3R:8964047-8964167 9.52e-01 120 chr3R:10688979-10689099 9.86e-01 120 chr2L:7395925-7396045 8.82e-01 120 chr3L:7592290-7592410 4.81e-01 120 chr3L:7367941-7368061 4.17e-05 26_[+4(7.19e-07)]_86 chr3R:30789551-30789671 3.64e-02 120 chrX:17696797-17696917 4.97e-01 120 chr2R:21527426-21527546 7.40e-02 120 chr3L:22276802-22276922 3.37e-08 81_[+4(2.15e-06)]_[+2(2.60e-06)]_4_\ [+1(7.21e-05)]_11 chr3L:4615211-4615331 9.28e-06 104_[+2(4.56e-06)]_8 chr3R:15117852-15117972 6.34e-01 120 chrX:19352919-19353039 2.99e-01 120 chr2R:12727655-12727775 9.97e-01 120 chrX:19348935-19349055 2.19e-01 120 chrX:2396629-2396749 3.75e-01 120 chrX:16854870-16854990 1.26e-01 7_[+1(8.01e-05)]_105 chr2R:14576114-14576234 4.78e-02 120 chr3L:17310651-17310771 7.90e-01 120 chr3L:1151782-1151902 9.46e-02 120 chr3R:18242162-18242282 1.05e-02 17_[+1(1.91e-05)]_95 chr2L:16869086-16869206 8.34e-01 120 chr3R:19014935-19015055 3.36e-02 120 chrX:7617050-7617170 2.84e-05 77_[+3(3.46e-07)]_35 chr2R:21709646-21709766 1.23e-04 11_[+1(2.40e-05)]_101 chr2R:21364780-21364900 1.00e+00 120 chr2L:8080799-8080919 8.85e-01 120 chrX:17782149-17782269 2.01e-02 18_[+5(1.39e-06)]_94 chr3R:18393604-18393724 9.97e-01 120 chr3L:721112-721232 1.94e-02 37_[+2(9.27e-06)]_75 chr3L:3395494-3395614 7.21e-04 74_[+1(1.17e-05)]_38 chr3L:20276769-20276889 1.73e-01 120 chr2L:3587428-3587548 1.98e-01 120 chr3L:22471732-22471852 6.08e-02 25_[+2(5.90e-05)]_87 chrX:13764506-13764626 7.96e-01 120 chrX:771812-771932 8.94e-04 120 chr2L:8554334-8554454 5.72e-01 120 chr2R:11435220-11435340 3.89e-01 120 chr2L:7270413-7270533 7.24e-01 120 chr3L:18349406-18349526 2.25e-01 120 chr3L:14411037-14411157 1.56e-07 67_[+2(2.57e-07)]_9_[+1(5.42e-05)]_\ 28 chrX:10718045-10718165 5.66e-01 120 chr3L:6189167-6189287 6.01e-01 120 chr3L:18402733-18402853 1.00e+00 120 chrX:9664560-9664680 4.95e-01 120 chr3R:30134808-30134928 2.90e-01 120 chr2L:3851437-3851557 5.06e-01 120 chr2R:10123700-10123820 1.00e-01 120 chrX:3019746-3019866 1.13e-01 120 chr3R:22536585-22536705 1.23e-01 120 chr3R:13799720-13799840 9.32e-01 120 chr2R:14161302-14161422 9.30e-01 120 chr3L:10745716-10745836 9.89e-01 120 chr3R:23293550-23293670 6.49e-01 120 chr2L:8746415-8746535 9.94e-01 120 chr3L:21047137-21047257 5.08e-01 120 chr3R:29690582-29690702 7.45e-01 120 chr3R:14470738-14470858 9.46e-01 120 chr2R:19860384-19860504 1.37e-01 120 chr3R:23969544-23969664 8.08e-01 120 chrX:11379323-11379443 2.97e-01 120 chr2L:14441034-14441154 4.48e-01 120 chr3R:10636182-10636302 9.88e-01 120 chr2L:3507611-3507731 6.60e-01 120 chr3R:31060395-31060515 5.71e-08 24_[+1(1.91e-05)]_2_[+4(7.19e-07)]_\ 78 chr2L:9235694-9235814 2.47e-01 120 chr3R:8849478-8849598 5.44e-02 120 chr2L:10760723-10760843 9.89e-01 120 chr3L:5926067-5926187 6.94e-03 5_[+1(3.53e-05)]_107 chr3R:28677018-28677138 1.54e-04 107_[+1(1.03e-05)]_5 chr3R:15652758-15652878 9.33e-01 120 chr3L:7861161-7861281 9.84e-01 120 chr2L:8982741-8982861 4.63e-01 120 chr3L:18297495-18297615 9.98e-01 120 chr2L:21149288-21149408 1.63e-02 6_[+1(4.88e-05)]_106 chr2R:12644277-12644397 1.13e-01 120 chr3R:16769551-16769671 4.49e-01 120 chr3R:26888494-26888614 1.86e-01 120 chrX:8542120-8542240 2.49e-01 120 chr3L:11552040-11552160 6.62e-01 120 chr3L:20517051-20517171 1.02e-03 18_[+1(1.03e-05)]_94 chrX:14743905-14744025 8.30e-01 120 chrX:16944142-16944262 9.34e-01 120 chr3R:8744350-8744470 3.70e-01 120 chr3R:8354554-8354674 9.63e-01 120 chr2R:20252198-20252318 1.66e-03 120 chr3R:26106003-26106123 8.44e-01 120 chrX:5639213-5639333 6.21e-01 120 chr3L:8604379-8604499 1.38e-01 120 chrX:12242499-12242619 2.31e-01 109_[+1(8.01e-05)]_3 chr3R:8955016-8955136 3.87e-01 120 chr3R:30812617-30812737 9.62e-01 120 chr3L:11334118-11334238 9.99e-01 120 chr2L:15442321-15442441 9.83e-01 120 chr2L:15908587-15908707 9.98e-01 120 chr3R:16837965-16838085 3.94e-01 120 chr3L:9508804-9508924 9.01e-01 120 chr3R:8867839-8867959 6.11e-01 120 chrX:8271748-8271868 4.89e-01 120 chr2L:17583109-17583229 4.48e-02 107_[+1(8.01e-05)]_5 chrX:16822208-16822328 1.13e-01 120 chr3R:26012915-26013035 1.00e+00 120 chr2L:14701631-14701751 5.86e-02 32_[+1(5.28e-05)]_80 chr3R:11617502-11617622 3.91e-03 107_[+2(7.50e-06)]_5 chr3R:10140427-10140547 9.74e-01 120 chr3R:26117751-26117871 1.86e-01 120 chr2L:11189262-11189382 1.06e-01 120 chrX:8445032-8445152 1.00e+00 120 chr2L:18377277-18377397 7.25e-01 120 chr3L:11398800-11398920 1.00e+00 120 chr3R:31687920-31688040 3.83e-02 18_[+1(7.21e-05)]_94 chr2L:15254392-15254512 9.98e-01 120 chr2R:19389477-19389597 5.98e-05 82_[+2(1.05e-06)]_30 chrX:12454500-12454620 9.99e-01 120 chr2L:1428511-1428631 7.59e-02 120 chr2L:11417618-11417738 7.31e-01 120 chr3L:12271359-12271479 1.83e-01 120 chr3L:1216605-1216725 4.68e-01 120 chrX:10582199-10582319 3.03e-04 24_[+2(4.56e-06)]_88 chr3R:24010950-24011070 9.41e-01 120 chr3L:20471120-20471240 5.92e-01 120 chr3L:15999762-15999882 7.07e-01 120 chrX:14169227-14169347 2.61e-01 120 chr3R:8171628-8171748 1.36e-01 120 chr2L:18900016-18900136 3.53e-01 120 chr2L:14519351-14519471 8.00e-01 120 chr3R:26014397-26014517 8.70e-01 120 chrX:18921076-18921196 7.51e-01 120 chr3R:11661870-11661990 4.44e-02 69_[+1(9.74e-05)]_43 chr3R:5076292-5076412 8.87e-01 120 chr3R:28570952-28571072 8.60e-04 107_[+1(6.07e-05)]_5 chrX:17737981-17738101 3.19e-06 74_[+3(9.21e-08)]_38 chrX:10067667-10067787 2.90e-01 120 chr3L:15691354-15691474 9.98e-01 120 chr2L:3003534-3003654 1.00e+00 120 chr3R:17584192-17584312 9.76e-01 120 chr2R:11809471-11809591 4.69e-01 120 chr2L:18328866-18328986 1.77e-01 120 chr2L:9207179-9207299 7.23e-01 120 chr3R:19831094-19831214 9.59e-01 120 chr2L:16709744-16709864 6.78e-01 120 chrX:16834408-16834528 9.45e-01 120 chr2L:15061469-15061589 1.61e-02 11_[+1(5.42e-05)]_101 chr2L:8602743-8602863 8.48e-01 120 chr2R:19146104-19146224 8.47e-01 120 chr3R:8960476-8960596 9.80e-01 120 chr3R:5636890-5637010 3.69e-01 120 chr2L:5238317-5238437 9.16e-01 120 chr3R:26444260-26444380 9.92e-01 120 chrX:13757005-13757125 1.34e-01 120 chr3L:2159038-2159158 2.16e-01 120 chr3R:16496343-16496463 9.78e-01 120 chr3R:8673951-8674071 1.32e-01 120 chr3L:18784688-18784808 2.55e-04 71_[+1(7.28e-05)]_41 chr3L:10206324-10206444 1.00e+00 120 chr3L:797050-797170 4.26e-01 120 chr2L:16647861-16647981 9.15e-01 120 chr3R:16771755-16771875 1.02e-01 120 chr2R:14909973-14910093 3.90e-01 [+5(7.36e-05)]_112 chr3R:6468138-6468258 5.07e-01 120 chr3R:30413951-30414071 6.09e-01 120 chr3L:13923427-13923547 2.82e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************