******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tx.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:10854586-10854706 1.0000 120 chr3R:22041736-22041856 1.0000 120 chrX:19746353-19746473 1.0000 120 chr2R:17535420-17535540 1.0000 120 chr3L:21216861-21216981 1.0000 120 chr3L:8633994-8634114 1.0000 120 chr3R:22491249-22491369 1.0000 120 chr3R:20833900-20834020 1.0000 120 chr3R:8030572-8030692 1.0000 120 chr3R:26436677-26436797 1.0000 120 chr3R:21214719-21214839 1.0000 120 chr3R:8784918-8785038 1.0000 120 chr3L:11492614-11492734 1.0000 120 chr3R:7089895-7090015 1.0000 120 chr2R:16849575-16849695 1.0000 120 chr3R:14284547-14284667 1.0000 120 chr2L:6069034-6069154 1.0000 120 chrX:19348957-19349077 1.0000 120 chr3R:8801481-8801601 1.0000 120 chr3R:32051848-32051968 1.0000 120 chr3L:14038461-14038581 1.0000 120 chr2R:6648310-6648430 1.0000 120 chrX:11391640-11391760 1.0000 120 chrX:1380436-1380556 1.0000 120 chr3L:627885-628005 1.0000 120 chr3R:12728457-12728577 1.0000 120 chr3R:26452632-26452752 1.0000 120 chr3R:8341039-8341159 1.0000 120 chrX:10814532-10814652 1.0000 120 chr2R:24132867-24132987 1.0000 120 chr2L:3713156-3713276 1.0000 120 chr2R:22925003-22925123 1.0000 120 chrX:4117433-4117553 1.0000 120 chr3L:629837-629957 1.0000 120 chr3L:17024367-17024487 1.0000 120 chr3R:8893153-8893273 1.0000 120 chr2L:9864500-9864620 1.0000 120 chr3L:19618506-19618626 1.0000 120 chr3R:7500630-7500750 1.0000 120 chrX:618742-618862 1.0000 120 chr2R:19310996-19311116 1.0000 120 chr2R:18277206-18277326 1.0000 120 chr2R:16868569-16868689 1.0000 120 chr2R:12290151-12290271 1.0000 120 chrX:10325982-10326102 1.0000 120 chr3R:30076247-30076367 1.0000 120 chr3R:26462661-26462781 1.0000 120 chr2R:21323979-21324099 1.0000 120 chr3L:3814643-3814763 1.0000 120 chr2L:9448888-9449008 1.0000 120 chrX:3862481-3862601 1.0000 120 chr2R:15351235-15351355 1.0000 120 chr2L:7073189-7073309 1.0000 120 chr2R:10278138-10278258 1.0000 120 chrX:13281392-13281512 1.0000 120 chr2R:14137026-14137146 1.0000 120 chr2L:10677536-10677656 1.0000 120 chr3R:5565061-5565181 1.0000 120 chr3L:16149988-16150108 1.0000 120 chr3L:2532050-2532170 1.0000 120 chrX:3538930-3539050 1.0000 120 chr3R:29470272-29470392 1.0000 120 chr2R:23202125-23202245 1.0000 120 chr2R:18605197-18605317 1.0000 120 chr2R:10013365-10013485 1.0000 120 chr2L:6819519-6819639 1.0000 120 chr2L:14024818-14024938 1.0000 120 chr3R:29068900-29069020 1.0000 120 chr3L:3770990-3771110 1.0000 120 chrX:5086272-5086392 1.0000 120 chr3R:24026228-24026348 1.0000 120 chr3R:30815013-30815133 1.0000 120 chr3R:22639290-22639410 1.0000 120 chr2R:23668834-23668954 1.0000 120 chrX:10387800-10387920 1.0000 120 chrX:8533739-8533859 1.0000 120 chr2L:4292709-4292829 1.0000 120 chrX:14213709-14213829 1.0000 120 chr3L:16544342-16544462 1.0000 120 chr3L:19618711-19618831 1.0000 120 chrX:13333019-13333139 1.0000 120 chr2R:17160994-17161114 1.0000 120 chr2L:16690057-16690177 1.0000 120 chr2L:3058884-3059004 1.0000 120 chr3R:21214922-21215042 1.0000 120 chr3R:26121950-26122070 1.0000 120 chr2R:22384541-22384661 1.0000 120 chr3R:11869305-11869425 1.0000 120 chrX:16103604-16103724 1.0000 120 chr2R:23868645-23868765 1.0000 120 chr2R:13999283-13999403 1.0000 120 chr3L:11303924-11304044 1.0000 120 chr3R:9430485-9430605 1.0000 120 chr3R:15225448-15225568 1.0000 120 chrX:15739030-15739150 1.0000 120 chrX:17780433-17780553 1.0000 120 chr3R:26892872-26892992 1.0000 120 chr2R:10160220-10160340 1.0000 120 chr3R:29027145-29027265 1.0000 120 chr2L:488429-488549 1.0000 120 chr2R:8928078-8928198 1.0000 120 chr3R:29251547-29251667 1.0000 120 chr3R:31805370-31805490 1.0000 120 chr2L:18377253-18377373 1.0000 120 chr2L:3477338-3477458 1.0000 120 chr2R:22197205-22197325 1.0000 120 chr2R:13586452-13586572 1.0000 120 chrX:16683931-16684051 1.0000 120 chr3L:10679879-10679999 1.0000 120 chr2L:109347-109467 1.0000 120 chr3R:21580205-21580325 1.0000 120 chrX:15591920-15592040 1.0000 120 chr3R:5998427-5998547 1.0000 120 chr2R:13897611-13897731 1.0000 120 chr3L:8544964-8545084 1.0000 120 chr2R:19437052-19437172 1.0000 120 chr2R:24186494-24186614 1.0000 120 chr2L:3303524-3303644 1.0000 120 chr2R:8067807-8067927 1.0000 120 chrX:5665967-5666087 1.0000 120 chrX:10362993-10363113 1.0000 120 chr2L:10989329-10989449 1.0000 120 chr2L:6339655-6339775 1.0000 120 chr2R:16202918-16203038 1.0000 120 chr3L:5926087-5926207 1.0000 120 chr3R:9344844-9344964 1.0000 120 chrX:19964399-19964519 1.0000 120 chrX:3381098-3381218 1.0000 120 chrX:20631221-20631341 1.0000 120 chr2L:7494359-7494479 1.0000 120 chr2R:18172410-18172530 1.0000 120 chr2L:1837883-1838003 1.0000 120 chr3R:16704392-16704512 1.0000 120 chr3L:12799054-12799174 1.0000 120 chr2R:14411702-14411822 1.0000 120 chr3R:12997861-12997981 1.0000 120 chr3R:23300715-23300835 1.0000 120 chr2L:7998803-7998923 1.0000 120 chrX:11350562-11350682 1.0000 120 chr2L:8083344-8083464 1.0000 120 chr3R:22487251-22487371 1.0000 120 chr3R:16355536-16355656 1.0000 120 chr2L:7033411-7033531 1.0000 120 chr3R:20593021-20593141 1.0000 120 chr3L:12037862-12037982 1.0000 120 chr3R:21850226-21850346 1.0000 120 chr3R:15139469-15139589 1.0000 120 chr3R:19648648-19648768 1.0000 120 chrX:16782257-16782377 1.0000 120 chr2R:9388641-9388761 1.0000 120 chrX:17175883-17176003 1.0000 120 chr2L:3356440-3356560 1.0000 120 chr2R:16150145-16150265 1.0000 120 chrX:6820901-6821021 1.0000 120 chr3L:11334106-11334226 1.0000 120 chr2R:9847833-9847953 1.0000 120 chr2L:18328909-18329029 1.0000 120 chr3L:16760403-16760523 1.0000 120 chr2R:10066530-10066650 1.0000 120 chrX:8574867-8574987 1.0000 120 chr3L:21196692-21196812 1.0000 120 chr3L:18784694-18784814 1.0000 120 chr2R:16571757-16571877 1.0000 120 chrX:17887203-17887323 1.0000 120 chrX:10587580-10587700 1.0000 120 chr3L:1350572-1350692 1.0000 120 chrX:3068462-3068582 1.0000 120 chr2R:19128022-19128142 1.0000 120 chrX:6352359-6352479 1.0000 120 chr3R:9701471-9701591 1.0000 120 chr2R:13008296-13008416 1.0000 120 chr3R:8563912-8564032 1.0000 120 chr2R:14913275-14913395 1.0000 120 chrX:9137265-9137385 1.0000 120 chr2L:7412318-7412438 1.0000 120 chrX:1236695-1236815 1.0000 120 chrX:13128031-13128151 1.0000 120 chr3L:8110322-8110442 1.0000 120 chrX:9356388-9356508 1.0000 120 chr3R:9055289-9055409 1.0000 120 chr3R:22023312-22023432 1.0000 120 chr2L:5093393-5093513 1.0000 120 chr2L:15751111-15751231 1.0000 120 chr2L:14359017-14359137 1.0000 120 chr2L:11829384-11829504 1.0000 120 chr2R:17514173-17514293 1.0000 120 chrX:20503276-20503396 1.0000 120 chr3R:19164935-19165055 1.0000 120 chr3R:21060649-21060769 1.0000 120 chr2R:10103764-10103884 1.0000 120 chr3R:22664398-22664518 1.0000 120 chr2R:7490424-7490544 1.0000 120 chr2R:9693604-9693724 1.0000 120 chr3R:18919015-18919135 1.0000 120 chr3L:199214-199334 1.0000 120 chrX:5420855-5420975 1.0000 120 chrX:16441394-16441514 1.0000 120 chr3R:5758934-5759054 1.0000 120 chr2R:7987890-7988010 1.0000 120 chr3L:6606053-6606173 1.0000 120 chr2L:13219894-13220014 1.0000 120 chrX:10067645-10067765 1.0000 120 chrX:11854937-11855057 1.0000 120 chr3R:5686517-5686637 1.0000 120 chr2L:11331835-11331955 1.0000 120 chrX:6615528-6615648 1.0000 120 chr3L:4292213-4292333 1.0000 120 chr2L:10856630-10856750 1.0000 120 chrX:17751841-17751961 1.0000 120 chr2L:21658582-21658702 1.0000 120 chr2L:11199185-11199305 1.0000 120 chr3R:15792566-15792686 1.0000 120 chr2L:10967428-10967548 1.0000 120 chr3L:10899325-10899445 1.0000 120 chr3R:6468163-6468283 1.0000 120 chr2L:4847281-4847401 1.0000 120 chr3R:30304908-30305028 1.0000 120 chr3R:5856298-5856418 1.0000 120 chr3R:9065110-9065230 1.0000 120 chr3L:5654702-5654822 1.0000 120 chr2R:11359192-11359312 1.0000 120 chr3R:29997750-29997870 1.0000 120 chr2R:13502432-13502552 1.0000 120 chr3R:7977665-7977785 1.0000 120 chr3L:12803732-12803852 1.0000 120 chr2R:20832482-20832602 1.0000 120 chr3L:8289810-8289930 1.0000 120 chr2R:7815106-7815226 1.0000 120 chrX:1370162-1370282 1.0000 120 chr3L:17912709-17912829 1.0000 120 chr3L:1295720-1295840 1.0000 120 chr2R:12772795-12772915 1.0000 120 chr2L:17583097-17583217 1.0000 120 chrX:9664560-9664680 1.0000 120 chr2R:9440365-9440485 1.0000 120 chr3R:26654735-26654855 1.0000 120 chr2L:8738323-8738443 1.0000 120 chrX:13391235-13391355 1.0000 120 chr3R:17540276-17540396 1.0000 120 chr2R:19669822-19669942 1.0000 120 chr3L:7861072-7861192 1.0000 120 chrX:17176644-17176764 1.0000 120 chr2R:17590817-17590937 1.0000 120 chrX:1890083-1890203 1.0000 120 chr2L:20950909-20951029 1.0000 120 chr3R:4821294-4821414 1.0000 120 chr3L:8446183-8446303 1.0000 120 chr3L:9435425-9435545 1.0000 120 chr3R:17072662-17072782 1.0000 120 chr3R:26567047-26567167 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tx/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tx.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.19 G 0.19 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.19 G 0.19 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACAGCTG MEME-1 width = 8 sites = 24 llr = 235 E-value = 3.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 88:a:::: pos.-specific C :2a:2a:: probability G 21::8::a matrix T ::::::a: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 ****** Relative 1.4 ****** Entropy 1.2 ****** (14.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9435425-9435545 61 1.17e-05 ATCGCAGGCA AACAGCTG ATAAGCGTTA chrX:17176644-17176764 13 1.17e-05 GCTGCTCGAA AACAGCTG AGAAGTTTTC chr3R:5856298-5856418 42 1.17e-05 AAGCCAGACA AACAGCTG TTCTCCGAAG chr3R:22487251-22487371 107 1.17e-05 TTGAGTCCGG AACAGCTG ATTCAG chr2L:10989329-10989449 20 1.17e-05 CTATCGGCCG AACAGCTG GTGCGTGCGC chr3L:10679879-10679999 23 1.17e-05 CACGAAGAAA AACAGCTG TTAAACACCC chr3R:31805370-31805490 1 1.17e-05 . AACAGCTG TTCGCCCAGC chr3R:5565061-5565181 15 1.17e-05 GAAAAGGGCA AACAGCTG TTGTTGTTTT chr2R:14137026-14137146 109 1.17e-05 GTAAAAATAG AACAGCTG ACTT chr3L:629837-629957 111 1.17e-05 GTGCAACTCG AACAGCTG TT chr3L:8633994-8634114 92 1.17e-05 CGCCACGAGC AACAGCTG ATCAAGCCTG chr3L:21196692-21196812 96 2.63e-05 GTTGCCAAAC ACCAGCTG GCAGCCATTC chr3R:21580205-21580325 42 2.63e-05 ctgcttgctt gacagctg ctgctgttgc chr3L:19618506-19618626 54 2.63e-05 GCAGAAAGTC GACAGCTG TTTTTTGCGC chr3R:22041736-22041856 68 2.63e-05 TAATATGTTA ACCAGCTG CGCAACTCTG chr2R:17590817-17590937 17 3.80e-05 GTCCTCCGAG AACACCTG TTCTGATGAT chrX:9664560-9664680 1 3.80e-05 . AACACCTG TCCAATTTAA chr3R:16355536-16355656 70 3.80e-05 TATGATTTTC AACACCTG TTCGTCGAGA chr3R:12728457-12728577 31 3.80e-05 CTGGACCAAT AACACCTG CTAGTATTTT chr3R:26567047-26567167 98 4.53e-05 AGGCAGCAAC AGCAGCTG TGGTGGCTGA chr3R:8341039-8341159 77 4.53e-05 AAACAATTTA AGCAGCTG CCAATAAAAA chr2L:8738323-8738443 103 4.98e-05 TTATGTTTCT GCCAGCTG ATAAGCGGCT chr3R:26452632-26452752 105 4.98e-05 AAAAAGCAAG GCCAGCTG TCCATTTG chr2R:18605197-18605317 104 5.71e-05 GTTTGCTTTT CACAGCTG CTCACGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9435425-9435545 1.2e-05 60_[+1]_52 chrX:17176644-17176764 1.2e-05 12_[+1]_100 chr3R:5856298-5856418 1.2e-05 41_[+1]_71 chr3R:22487251-22487371 1.2e-05 106_[+1]_6 chr2L:10989329-10989449 1.2e-05 19_[+1]_93 chr3L:10679879-10679999 1.2e-05 22_[+1]_90 chr3R:31805370-31805490 1.2e-05 [+1]_112 chr3R:5565061-5565181 1.2e-05 14_[+1]_98 chr2R:14137026-14137146 1.2e-05 108_[+1]_4 chr3L:629837-629957 1.2e-05 110_[+1]_2 chr3L:8633994-8634114 1.2e-05 91_[+1]_21 chr3L:21196692-21196812 2.6e-05 95_[+1]_17 chr3R:21580205-21580325 2.6e-05 41_[+1]_71 chr3L:19618506-19618626 2.6e-05 53_[+1]_59 chr3R:22041736-22041856 2.6e-05 67_[+1]_45 chr2R:17590817-17590937 3.8e-05 16_[+1]_96 chrX:9664560-9664680 3.8e-05 [+1]_112 chr3R:16355536-16355656 3.8e-05 69_[+1]_43 chr3R:12728457-12728577 3.8e-05 30_[+1]_82 chr3R:26567047-26567167 4.5e-05 97_[+1]_15 chr3R:8341039-8341159 4.5e-05 76_[+1]_36 chr2L:8738323-8738443 5e-05 102_[+1]_10 chr3R:26452632-26452752 5e-05 104_[+1]_8 chr2R:18605197-18605317 5.7e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAGCTG width=8 seqs=24 chr3L:9435425-9435545 ( 61) AACAGCTG 1 chrX:17176644-17176764 ( 13) AACAGCTG 1 chr3R:5856298-5856418 ( 42) AACAGCTG 1 chr3R:22487251-22487371 ( 107) AACAGCTG 1 chr2L:10989329-10989449 ( 20) AACAGCTG 1 chr3L:10679879-10679999 ( 23) AACAGCTG 1 chr3R:31805370-31805490 ( 1) AACAGCTG 1 chr3R:5565061-5565181 ( 15) AACAGCTG 1 chr2R:14137026-14137146 ( 109) AACAGCTG 1 chr3L:629837-629957 ( 111) AACAGCTG 1 chr3L:8633994-8634114 ( 92) AACAGCTG 1 chr3L:21196692-21196812 ( 96) ACCAGCTG 1 chr3R:21580205-21580325 ( 42) GACAGCTG 1 chr3L:19618506-19618626 ( 54) GACAGCTG 1 chr3R:22041736-22041856 ( 68) ACCAGCTG 1 chr2R:17590817-17590937 ( 17) AACACCTG 1 chrX:9664560-9664680 ( 1) AACACCTG 1 chr3R:16355536-16355656 ( 70) AACACCTG 1 chr3R:12728457-12728577 ( 31) AACACCTG 1 chr3R:26567047-26567167 ( 98) AGCAGCTG 1 chr3R:8341039-8341159 ( 77) AGCAGCTG 1 chr2L:8738323-8738443 ( 103) GCCAGCTG 1 chr3R:26452632-26452752 ( 105) GCCAGCTG 1 chr2R:18605197-18605317 ( 104) CACAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 3.2e-004 137 -219 -19 -1123 129 -19 -119 -1123 -1123 240 -1123 -1123 171 -1123 -1123 -1123 -1123 -19 213 -1123 -1123 240 -1123 -1123 -1123 -1123 -1123 167 -1123 -1123 239 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.2e-004 0.791667 0.041667 0.166667 0.000000 0.750000 0.166667 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAGCTG MEME-1 regular expression -------------------------------------------------------------------------------- AACAGCTG -------------------------------------------------------------------------------- Time 7.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GHGCAGCG MEME-2 width = 8 sites = 18 llr = 178 E-value = 7.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4::a::: pos.-specific C 24:a:17: probability G 8:a::9:a matrix T :2::::3: bits 2.4 ** * 2.2 ** * 1.9 ** * * 1.7 * **** * Relative 1.4 * ****** Entropy 1.2 * ****** (14.3 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGCAGCG consensus C T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5654702-5654822 19 2.74e-06 AGTGCGTCGT GCGCAGCG GCAGCGTTTT chr2L:11829384-11829504 50 2.74e-06 TCTTACCATT GCGCAGCG TGGCCACCTG chr2R:8928078-8928198 56 2.74e-06 CAGTGGCGTC GCGCAGCG TTGGACAGGT chr2R:13897611-13897731 96 7.14e-06 GTACTGAATG GAGCAGCG CCACTCCGAG chr3R:31805370-31805490 54 7.14e-06 GAAAAACGGA GAGCAGCG GTGGCTCAAA chrX:3068462-3068582 110 1.17e-05 TTTTCTGCCA GTGCAGCG CAC chr3L:629837-629957 77 1.17e-05 GTGTTAAAAT GTGCAGCG CCCTTGTGTG chr3R:12728457-12728577 85 1.17e-05 TTGCCCCACT GTGCAGCG GTATCATTCA chr2R:20832482-20832602 81 1.62e-05 CAGCAACAAA GCGCAGTG TTGTAAAGTG chr3R:15225448-15225568 79 1.62e-05 TAAAAATACC GCGCAGTG TCATCTCCAT chr3R:18919015-18919135 100 1.89e-05 CTCCCCCCAC CCGCAGCG CCCATCTGGT chr3R:5758934-5759054 37 2.62e-05 GTGACCATTT GAGCAGTG CAAGAAATAC chr3L:21216861-21216981 39 2.62e-05 TTGGCAACGC GAGCAGTG TGTTAAATAT chr3R:22491249-22491369 20 2.89e-05 CGTTCTGTGT GCGCACCG ATGCGCCGGA chrX:8533739-8533859 111 3.33e-05 AGCAGCGCAG CAGCAGCG CA chr2R:24132867-24132987 72 3.33e-05 CACTAGCTCG CAGCAGCG CACGTGATAC chr3L:21196692-21196812 40 4.08e-05 TTTAATTTTA GTGCAGTG TATATGCTTC chr2L:14024818-14024938 18 4.52e-05 TTTCGAGCAA GAGCACCG ACTGTAGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5654702-5654822 2.7e-06 18_[+2]_94 chr2L:11829384-11829504 2.7e-06 49_[+2]_63 chr2R:8928078-8928198 2.7e-06 55_[+2]_57 chr2R:13897611-13897731 7.1e-06 95_[+2]_17 chr3R:31805370-31805490 7.1e-06 53_[+2]_59 chrX:3068462-3068582 1.2e-05 109_[+2]_3 chr3L:629837-629957 1.2e-05 76_[+2]_36 chr3R:12728457-12728577 1.2e-05 84_[+2]_28 chr2R:20832482-20832602 1.6e-05 80_[+2]_32 chr3R:15225448-15225568 1.6e-05 78_[+2]_34 chr3R:18919015-18919135 1.9e-05 99_[+2]_13 chr3R:5758934-5759054 2.6e-05 36_[+2]_76 chr3L:21216861-21216981 2.6e-05 38_[+2]_74 chr3R:22491249-22491369 2.9e-05 19_[+2]_93 chrX:8533739-8533859 3.3e-05 110_[+2]_2 chr2R:24132867-24132987 3.3e-05 71_[+2]_41 chr3L:21196692-21196812 4.1e-05 39_[+2]_73 chr2L:14024818-14024938 4.5e-05 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GHGCAGCG width=8 seqs=18 chr3L:5654702-5654822 ( 19) GCGCAGCG 1 chr2L:11829384-11829504 ( 50) GCGCAGCG 1 chr2R:8928078-8928198 ( 56) GCGCAGCG 1 chr2R:13897611-13897731 ( 96) GAGCAGCG 1 chr3R:31805370-31805490 ( 54) GAGCAGCG 1 chrX:3068462-3068582 ( 110) GTGCAGCG 1 chr3L:629837-629957 ( 77) GTGCAGCG 1 chr3R:12728457-12728577 ( 85) GTGCAGCG 1 chr2R:20832482-20832602 ( 81) GCGCAGTG 1 chr3R:15225448-15225568 ( 79) GCGCAGTG 1 chr3R:18919015-18919135 ( 100) CCGCAGCG 1 chr3R:5758934-5759054 ( 37) GAGCAGTG 1 chr3L:21216861-21216981 ( 39) GAGCAGTG 1 chr3R:22491249-22491369 ( 20) GCGCACCG 1 chrX:8533739-8533859 ( 111) CAGCAGCG 1 chr2R:24132867-24132987 ( 72) CAGCAGCG 1 chr3L:21196692-21196812 ( 40) GTGCAGTG 1 chr2L:14024818-14024938 ( 18) GAGCACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 7.9e+000 -1081 -19 213 -1081 35 103 -1081 -50 -1081 -1081 239 -1081 -1081 240 -1081 -1081 171 -1081 -1081 -1081 -1081 -77 222 -1081 -1081 193 -1081 -18 -1081 -1081 239 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.9e+000 0.000000 0.166667 0.833333 0.000000 0.388889 0.388889 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GHGCAGCG MEME-2 regular expression -------------------------------------------------------------------------------- G[ACT]GCAG[CT]G -------------------------------------------------------------------------------- Time 14.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTTGCC MEME-3 width = 8 sites = 15 llr = 153 E-value = 2.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C :7::::a9 probability G a19:3a:1 matrix T :3:a7::: bits 2.4 * ** 2.2 * *** 1.9 * *** 1.7 * ** *** Relative 1.4 * ** *** Entropy 1.2 * ** *** (14.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTGCC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17590817-17590937 65 4.64e-06 ATACATCAGA GCGTTGCC AGAGTCCAGC chrX:5420855-5420975 85 4.64e-06 TTCTTAGGCG GCGTTGCC ACCGAATGTG chrX:9356388-9356508 19 4.64e-06 GGCAACATTG GCGTTGCC AGATAATAGA chr3L:21196692-21196812 84 4.64e-06 GTTTACTTAC GCGTTGCC AAACACCAGC chrX:1380436-1380556 81 4.64e-06 CACTGGCTCG GCGTTGCC ACCTCGCGGG chr3R:17072662-17072782 32 7.45e-06 TCACCACGAA GCGTGGCC ACTTGTTGTG chr3L:8110322-8110442 39 7.45e-06 TGTGAAGCGC GCGTGGCC ACAGAGCTCG chr2L:4847281-4847401 6 1.51e-05 GGTGG GTGTTGCC ACCTGATCGA chr2R:16202918-16203038 5 1.51e-05 ATCA GTGTTGCC AATTTAGCTT chrX:4117433-4117553 71 1.51e-05 TTTTGCGATA GTGTTGCC ACTGACAACA chr2R:10160220-10160340 113 1.97e-05 TCGCCACACA GTGTGGCC chr3R:18919015-18919135 62 2.44e-05 GCGGGGGGGG GGGTTGCC AACTGCTGAT chrX:6352359-6352479 70 3.19e-05 GTACGTAATC GCATTGCC ATGTCGCTCT chr3R:32051848-32051968 75 3.65e-05 ATATATGTGT GCGTTGCG GGACTTGTGC chr2L:10856630-10856750 11 4.38e-05 CGAAAATATA GCATGGCC CACGAACTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17590817-17590937 4.6e-06 64_[+3]_48 chrX:5420855-5420975 4.6e-06 84_[+3]_28 chrX:9356388-9356508 4.6e-06 18_[+3]_94 chr3L:21196692-21196812 4.6e-06 83_[+3]_29 chrX:1380436-1380556 4.6e-06 80_[+3]_32 chr3R:17072662-17072782 7.4e-06 31_[+3]_81 chr3L:8110322-8110442 7.4e-06 38_[+3]_74 chr2L:4847281-4847401 1.5e-05 5_[+3]_107 chr2R:16202918-16203038 1.5e-05 4_[+3]_108 chrX:4117433-4117553 1.5e-05 70_[+3]_42 chr2R:10160220-10160340 2e-05 112_[+3] chr3R:18919015-18919135 2.4e-05 61_[+3]_51 chrX:6352359-6352479 3.2e-05 69_[+3]_43 chr3R:32051848-32051968 3.6e-05 74_[+3]_38 chr2L:10856630-10856750 4.4e-05 10_[+3]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTTGCC width=8 seqs=15 chr2R:17590817-17590937 ( 65) GCGTTGCC 1 chrX:5420855-5420975 ( 85) GCGTTGCC 1 chrX:9356388-9356508 ( 19) GCGTTGCC 1 chr3L:21196692-21196812 ( 84) GCGTTGCC 1 chrX:1380436-1380556 ( 81) GCGTTGCC 1 chr3R:17072662-17072782 ( 32) GCGTGGCC 1 chr3L:8110322-8110442 ( 39) GCGTGGCC 1 chr2L:4847281-4847401 ( 6) GTGTTGCC 1 chr2R:16202918-16203038 ( 5) GTGTTGCC 1 chrX:4117433-4117553 ( 71) GTGTTGCC 1 chr2R:10160220-10160340 ( 113) GTGTGGCC 1 chr3R:18919015-18919135 ( 62) GGGTTGCC 1 chrX:6352359-6352479 ( 70) GCATTGCC 1 chr3R:32051848-32051968 ( 75) GCGTTGCG 1 chr2L:10856630-10856750 ( 11) GCATGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 2.3e+002 -1055 -1055 239 -1055 -1055 181 -151 -24 -120 -1055 219 -1055 -1055 -1055 -1055 167 -1055 -1055 49 122 -1055 -1055 239 -1055 -1055 240 -1055 -1055 -1055 230 -151 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.066667 0.266667 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.933333 0.066667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCC MEME-3 regular expression -------------------------------------------------------------------------------- G[CT]GT[TG]GCC -------------------------------------------------------------------------------- Time 20.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCAGKG MEME-4 width = 8 sites = 5 llr = 60 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::aa:::: probability G aa:::a6a matrix T ::::::4: bits 2.4 **** * * 2.2 **** * * 1.9 **** * * 1.7 ****** * Relative 1.4 ****** * Entropy 1.2 ******** (17.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCAGGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16202918-16203038 99 2.74e-06 TTGGCAGCAC GGCCAGGG GATGGTCGCG chr2R:21323979-21324099 93 2.74e-06 TCTGCGGTTT GGCCAGGG CTGCAGCATC chr3R:22491249-22491369 68 2.74e-06 ACAGAGGAGA GGCCAGGG TCGACATTTT chr2L:11829384-11829504 81 7.26e-06 ACGATCGGCT GGCCAGTG TTGGTAAACA chr3L:8110322-8110442 20 7.26e-06 CACCTGTCTA GGCCAGTG CTGTGAAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16202918-16203038 2.7e-06 98_[+4]_14 chr2R:21323979-21324099 2.7e-06 92_[+4]_20 chr3R:22491249-22491369 2.7e-06 67_[+4]_45 chr2L:11829384-11829504 7.3e-06 80_[+4]_32 chr3L:8110322-8110442 7.3e-06 19_[+4]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCAGKG width=8 seqs=5 chr2R:16202918-16203038 ( 99) GGCCAGGG 1 chr2R:21323979-21324099 ( 93) GGCCAGGG 1 chr3R:22491249-22491369 ( 68) GGCCAGGG 1 chr2L:11829384-11829504 ( 81) GGCCAGTG 1 chr3L:8110322-8110442 ( 20) GGCCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.6e+004 -897 -897 239 -897 -897 -897 239 -897 -897 239 -897 -897 -897 239 -897 -897 171 -897 -897 -897 -897 -897 239 -897 -897 -897 166 35 -897 -897 239 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCAGKG MEME-4 regular expression -------------------------------------------------------------------------------- GGCCAG[GT]G -------------------------------------------------------------------------------- Time 27.13 secs. ******************************************************************************** ******************************************************************************** MOTIF YACAGTGG MEME-5 width = 8 sites = 16 llr = 155 E-value = 4.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:::: pos.-specific C 5:a:3::3 probability G ::::8:a7 matrix T 5::::a:: bits 2.4 * * 2.2 * * 1.9 * * 1.7 ****** Relative 1.4 ******* Entropy 1.2 ******* (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTGG consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19164935-19165055 80 7.28e-06 CGCGCTCACG CACAGTGG TCGCTTTTGT chr2R:8928078-8928198 44 7.28e-06 TCTTGCCACG CACAGTGG CGTCGCGCAG chr2R:16868569-16868689 90 7.28e-06 GTGGAAAGCC CACAGTGG CTGCTGCTGC chr3L:14038461-14038581 53 7.28e-06 CATATGTAGA CACAGTGG GGACCACATA chr2L:15751111-15751231 36 1.93e-05 ccattactca tacagtgg agggtatact chr2L:7033411-7033531 88 1.93e-05 GCAGTGGGTG TACAGTGG GGTGCAAAAT chr3R:31805370-31805490 23 1.93e-05 CCCAGCCAGG TACAGTGG GACCAAGGCG chr3L:3814643-3814763 12 1.93e-05 CGGCAACAAG TACAGTGG AACACCGCTT chr2R:16849575-16849695 10 1.93e-05 AGAGGAACT TACAGTGG AAAAAAATAC chr3L:12037862-12037982 15 3.39e-05 GTGGATGCCA CACACTGG GCATAAAAAT chr3R:8801481-8801601 31 3.39e-05 CCCAAACGTT CACACTGG CTGCAAGCAT chr2L:11199185-11199305 23 4.59e-05 TCAATGTGGG TACAGTGC GTTTCATGGC chr2R:17160994-17161114 79 4.59e-05 AATGTGGCCT TACAGTGC AAATATATGC chr3R:7500630-7500750 97 4.59e-05 CTTGAAGCAG TACAGTGC TTTAGCAGGG chr3R:9055289-9055409 98 6.52e-05 GTAATTAATT CACACTGC AGGGTATCTA chr3L:21216861-21216981 67 6.52e-05 TTAAAACGTC CACACTGC ACAAATTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19164935-19165055 7.3e-06 79_[+5]_33 chr2R:8928078-8928198 7.3e-06 43_[+5]_69 chr2R:16868569-16868689 7.3e-06 89_[+5]_23 chr3L:14038461-14038581 7.3e-06 52_[+5]_60 chr2L:15751111-15751231 1.9e-05 35_[+5]_77 chr2L:7033411-7033531 1.9e-05 87_[+5]_25 chr3R:31805370-31805490 1.9e-05 22_[+5]_90 chr3L:3814643-3814763 1.9e-05 11_[+5]_101 chr2R:16849575-16849695 1.9e-05 9_[+5]_103 chr3L:12037862-12037982 3.4e-05 14_[+5]_98 chr3R:8801481-8801601 3.4e-05 30_[+5]_82 chr2L:11199185-11199305 4.6e-05 22_[+5]_90 chr2R:17160994-17161114 4.6e-05 78_[+5]_34 chr3R:7500630-7500750 4.6e-05 96_[+5]_16 chr3R:9055289-9055409 6.5e-05 97_[+5]_15 chr3L:21216861-21216981 6.5e-05 66_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YACAGTGG width=8 seqs=16 chr3R:19164935-19165055 ( 80) CACAGTGG 1 chr2R:8928078-8928198 ( 44) CACAGTGG 1 chr2R:16868569-16868689 ( 90) CACAGTGG 1 chr3L:14038461-14038581 ( 53) CACAGTGG 1 chr2L:15751111-15751231 ( 36) TACAGTGG 1 chr2L:7033411-7033531 ( 88) TACAGTGG 1 chr3R:31805370-31805490 ( 23) TACAGTGG 1 chr3L:3814643-3814763 ( 12) TACAGTGG 1 chr2R:16849575-16849695 ( 10) TACAGTGG 1 chr3L:12037862-12037982 ( 15) CACACTGG 1 chr3R:8801481-8801601 ( 31) CACACTGG 1 chr2L:11199185-11199305 ( 23) TACAGTGC 1 chr2R:17160994-17161114 ( 79) TACAGTGC 1 chr3R:7500630-7500750 ( 97) TACAGTGC 1 chr3R:9055289-9055409 ( 98) CACACTGC 1 chr3L:21216861-21216981 ( 67) CACACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 4.4e+004 -1064 140 -1064 67 171 -1064 -1064 -1064 -1064 240 -1064 -1064 171 -1064 -1064 -1064 -1064 40 198 -1064 -1064 -1064 -1064 167 -1064 -1064 239 -1064 -1064 72 185 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.4e+004 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.687500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YACAGTGG MEME-5 regular expression -------------------------------------------------------------------------------- [CT]ACA[GC]TG[GC] -------------------------------------------------------------------------------- Time 33.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10854586-10854706 6.42e-02 120 chr3R:22041736-22041856 6.96e-03 67_[+1(2.63e-05)]_45 chrX:19746353-19746473 1.38e-02 92_[+2(6.33e-05)]_20 chr2R:17535420-17535540 2.06e-01 120 chr3L:21216861-21216981 8.73e-04 38_[+2(2.62e-05)]_20_[+5(6.52e-05)]_\ 46 chr3L:8633994-8634114 4.91e-03 91_[+1(1.17e-05)]_21 chr3R:22491249-22491369 9.51e-05 19_[+2(2.89e-05)]_40_[+4(2.74e-06)]_\ 45 chr3R:20833900-20834020 4.53e-02 31_[+5(7.72e-05)]_81 chr3R:8030572-8030692 9.20e-01 120 chr3R:26436677-26436797 1.00e+00 120 chr3R:21214719-21214839 1.27e-01 120 chr3R:8784918-8785038 9.77e-01 120 chr3L:11492614-11492734 5.94e-02 75_[+4(9.06e-05)]_37 chr3R:7089895-7090015 2.81e-01 120 chr2R:16849575-16849695 7.55e-02 9_[+5(1.93e-05)]_103 chr3R:14284547-14284667 4.21e-02 120 chr2L:6069034-6069154 6.92e-03 120 chrX:19348957-19349077 9.99e-01 120 chr3R:8801481-8801601 7.26e-02 30_[+5(3.39e-05)]_82 chr3R:32051848-32051968 1.42e-01 74_[+3(3.65e-05)]_38 chr3L:14038461-14038581 5.01e-02 52_[+5(7.28e-06)]_60 chr2R:6648310-6648430 4.79e-01 120 chrX:11391640-11391760 9.84e-01 120 chrX:1380436-1380556 2.29e-05 48_[+4(2.06e-05)]_24_[+3(4.64e-06)]_\ 32 chr3L:627885-628005 1.37e-01 120 chr3R:12728457-12728577 1.25e-04 30_[+1(3.80e-05)]_46_[+2(1.17e-05)]_\ 28 chr3R:26452632-26452752 5.29e-03 104_[+1(4.98e-05)]_8 chr3R:8341039-8341159 1.08e-01 76_[+1(4.53e-05)]_36 chrX:10814532-10814652 9.47e-01 120 chr2R:24132867-24132987 1.74e-02 71_[+2(3.33e-05)]_41 chr2L:3713156-3713276 9.34e-01 120 chr2R:22925003-22925123 1.22e-01 120 chrX:4117433-4117553 6.25e-04 70_[+3(1.51e-05)]_42 chr3L:629837-629957 1.73e-04 76_[+2(1.17e-05)]_26_[+1(1.17e-05)]_\ 2 chr3L:17024367-17024487 4.56e-01 120 chr3R:8893153-8893273 1.00e+00 120 chr2L:9864500-9864620 9.64e-01 120 chr3L:19618506-19618626 1.19e-01 53_[+1(2.63e-05)]_59 chr3R:7500630-7500750 2.80e-02 96_[+5(4.59e-05)]_16 chrX:618742-618862 1.53e-01 120 chr2R:19310996-19311116 5.89e-01 120 chr2R:18277206-18277326 6.26e-01 120 chr2R:16868569-16868689 1.20e-04 89_[+5(7.28e-06)]_23 chr2R:12290151-12290271 9.85e-01 120 chrX:10325982-10326102 2.70e-01 120 chr3R:30076247-30076367 4.47e-01 120 chr3R:26462661-26462781 9.89e-01 120 chr2R:21323979-21324099 7.09e-05 92_[+4(2.74e-06)]_20 chr3L:3814643-3814763 1.59e-02 11_[+5(1.93e-05)]_101 chr2L:9448888-9449008 5.51e-01 120 chrX:3862481-3862601 3.41e-02 120 chr2R:15351235-15351355 2.00e-01 120 chr2L:7073189-7073309 9.59e-01 120 chr2R:10278138-10278258 9.99e-01 120 chrX:13281392-13281512 3.61e-01 120 chr2R:14137026-14137146 5.81e-02 108_[+1(1.17e-05)]_4 chr2L:10677536-10677656 6.58e-01 120 chr3R:5565061-5565181 1.03e-02 14_[+1(1.17e-05)]_98 chr3L:16149988-16150108 8.78e-01 120 chr3L:2532050-2532170 9.91e-01 120 chrX:3538930-3539050 1.99e-01 120 chr3R:29470272-29470392 1.20e-01 120 chr2R:23202125-23202245 5.40e-01 120 chr2R:18605197-18605317 1.44e-02 103_[+1(5.71e-05)]_9 chr2R:10013365-10013485 2.08e-01 120 chr2L:6819519-6819639 9.94e-01 120 chr2L:14024818-14024938 6.77e-02 17_[+2(4.52e-05)]_95 chr3R:29068900-29069020 2.50e-01 120 chr3L:3770990-3771110 4.46e-01 120 chrX:5086272-5086392 3.28e-01 120 chr3R:24026228-24026348 9.52e-01 120 chr3R:30815013-30815133 8.75e-01 120 chr3R:22639290-22639410 7.58e-01 120 chr2R:23668834-23668954 1.05e-02 120 chrX:10387800-10387920 8.71e-02 120 chrX:8533739-8533859 2.50e-02 110_[+2(3.33e-05)]_2 chr2L:4292709-4292829 6.30e-01 120 chrX:14213709-14213829 4.42e-01 120 chr3L:16544342-16544462 6.63e-02 120 chr3L:19618711-19618831 1.74e-01 120 chrX:13333019-13333139 8.20e-01 120 chr2R:17160994-17161114 4.18e-03 78_[+5(4.59e-05)]_34 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31_[+3(7.45e-06)]_31_[+3(1.51e-05)]_\ 42 chr3R:26567047-26567167 2.69e-03 97_[+1(4.53e-05)]_15 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n11.farnam.hpc.yale.internal ********************************************************************************