******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tup.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:18884924-18885044 1.0000 120 chr2L:519488-519608 1.0000 120 chr2L:14534019-14534139 1.0000 120 chr2L:18906688-18906808 1.0000 120 chr2R:15733315-15733435 1.0000 120 chr3L:6342362-6342482 1.0000 120 chr2L:18878492-18878612 1.0000 120 chr3R:16243009-16243129 1.0000 120 chrX:22433033-22433153 1.0000 120 chr2R:23997260-23997380 1.0000 120 chr2R:22324780-22324900 1.0000 120 chr2R:13723395-13723515 1.0000 120 chr2L:3601034-3601154 1.0000 120 chr3L:11286775-11286895 1.0000 120 chr3R:16254486-16254606 1.0000 120 chr2L:117879-117999 1.0000 120 chr3R:19798657-19798777 1.0000 120 chr2R:16178670-16178790 1.0000 120 chrX:16573821-16573941 1.0000 120 chr2R:18693249-18693369 1.0000 120 chr2L:18893031-18893151 1.0000 120 chrX:10115668-10115788 1.0000 120 chr2L:3013027-3013147 1.0000 120 chr3L:3903149-3903269 1.0000 120 chr2R:19569852-19569972 1.0000 120 chr2L:8545830-8545950 1.0000 120 chr3L:13022698-13022818 1.0000 120 chr3L:19040469-19040589 1.0000 120 chr3R:4381243-4381363 1.0000 120 chr2L:4346835-4346955 1.0000 120 chr2L:16817754-16817874 1.0000 120 chr3L:17458843-17458963 1.0000 120 chr3R:31060367-31060487 1.0000 120 chr2R:11106065-11106185 1.0000 120 chr3R:21499611-21499731 1.0000 120 chr3L:9020594-9020714 1.0000 120 chr3R:10651201-10651321 1.0000 120 chr2L:18907498-18907618 1.0000 120 chr2R:18308459-18308579 1.0000 120 chr3R:26280504-26280624 1.0000 120 chr3L:14055833-14055953 1.0000 120 chr3L:12606388-12606508 1.0000 120 chr2L:413175-413295 1.0000 120 chr3L:18242230-18242350 1.0000 120 chr2L:11038214-11038334 1.0000 120 chr2R:20155475-20155595 1.0000 120 chr3L:11402497-11402617 1.0000 120 chr2L:11417611-11417731 1.0000 120 chr2L:2872741-2872861 1.0000 120 chr2R:21662363-21662483 1.0000 120 chrX:7333327-7333447 1.0000 120 chr2R:23189328-23189448 1.0000 120 chr3R:21161838-21161958 1.0000 120 chr2R:22738391-22738511 1.0000 120 chrX:17582812-17582932 1.0000 120 chr2L:5196854-5196974 1.0000 120 chr3R:14285153-14285273 1.0000 120 chr2L:2864703-2864823 1.0000 120 chr3L:5809670-5809790 1.0000 120 chr2R:10439116-10439236 1.0000 120 chr2R:16837895-16838015 1.0000 120 chrX:3019682-3019802 1.0000 120 chr2L:19452462-19452582 1.0000 120 chr3R:5054821-5054941 1.0000 120 chr3L:4522099-4522219 1.0000 120 chr3R:19068058-19068178 1.0000 120 chr2L:838143-838263 1.0000 120 chr3L:10862092-10862212 1.0000 120 chr3L:3381983-3382103 1.0000 120 chr2R:16170816-16170936 1.0000 120 chr2L:8528542-8528662 1.0000 120 chr3R:26106000-26106120 1.0000 120 chr3L:15794441-15794561 1.0000 120 chr2L:18505700-18505820 1.0000 120 chrX:3357803-3357923 1.0000 120 chr2L:2357462-2357582 1.0000 120 chr4:1053858-1053978 1.0000 120 chr2L:18895219-18895339 1.0000 120 chrX:22837514-22837634 1.0000 120 chr3L:17659303-17659423 1.0000 120 chr2R:13968075-13968195 1.0000 120 chr3L:20944328-20944448 1.0000 120 chr2R:24593733-24593853 1.0000 120 chr3R:15792538-15792658 1.0000 120 chr3R:29039836-29039956 1.0000 120 chr3L:20954187-20954307 1.0000 120 chr3R:27274587-27274707 1.0000 120 chr2L:1710498-1710618 1.0000 120 chr3R:10689006-10689126 1.0000 120 chr3L:8925829-8925949 1.0000 120 chr3L:13450278-13450398 1.0000 120 chr3R:15804091-15804211 1.0000 120 chr2R:13430097-13430217 1.0000 120 chrX:3188567-3188687 1.0000 120 chr2L:1837884-1838004 1.0000 120 chr2R:23868750-23868870 1.0000 120 chr3L:8584244-8584364 1.0000 120 chr3R:28587021-28587141 1.0000 120 chr2R:18774899-18775019 1.0000 120 chr3R:13644794-13644914 1.0000 120 chr3R:18243884-18244004 1.0000 120 chr3L:14956473-14956593 1.0000 120 chr2R:15813382-15813502 1.0000 120 chr3R:23921855-23921975 1.0000 120 chr2R:23180960-23181080 1.0000 120 chr2L:16324797-16324917 1.0000 120 chr3L:12350424-12350544 1.0000 120 chr2L:20807802-20807922 1.0000 120 chr3L:224204-224324 1.0000 120 chr2L:18900003-18900123 1.0000 120 chr2R:9252056-9252176 1.0000 120 chr2R:21049428-21049548 1.0000 120 chr2L:22036949-22037069 1.0000 120 chr2L:1150706-1150826 1.0000 120 chrX:17473375-17473495 1.0000 120 chr2L:7339728-7339848 1.0000 120 chr3R:10140360-10140480 1.0000 120 chrX:11108324-11108444 1.0000 120 chr3R:15091929-15092049 1.0000 120 chr2R:20319554-20319674 1.0000 120 chr2L:12372536-12372656 1.0000 120 chr3L:21047069-21047189 1.0000 120 chr3L:4353831-4353951 1.0000 120 chr2R:21709653-21709773 1.0000 120 chr3L:8347483-8347603 1.0000 120 chr2L:16317908-16318028 1.0000 120 chr3R:24809709-24809829 1.0000 120 chrX:16320385-16320505 1.0000 120 chr3R:8744325-8744445 1.0000 120 chr3L:19861152-19861272 1.0000 120 chr2R:23577435-23577555 1.0000 120 chr2R:11469618-11469738 1.0000 120 chr3R:20276123-20276243 1.0000 120 chr3R:23176862-23176982 1.0000 120 chr3R:22147648-22147768 1.0000 120 chr3L:4239580-4239700 1.0000 120 chr3L:8395792-8395912 1.0000 120 chr2R:9109705-9109825 1.0000 120 chr2R:9087659-9087779 1.0000 120 chr3R:15676252-15676372 1.0000 120 chr3R:15092952-15093072 1.0000 120 chrX:1392918-1393038 1.0000 120 chr3L:13197707-13197827 1.0000 120 chr3R:21850342-21850462 1.0000 120 chr3L:642903-643023 1.0000 120 chr3R:28590637-28590757 1.0000 120 chrX:18900096-18900216 1.0000 120 chr3R:23729181-23729301 1.0000 120 chr2L:7813440-7813560 1.0000 120 chr3R:5015328-5015448 1.0000 120 chr3L:1690909-1691029 1.0000 120 chr2L:11203766-11203886 1.0000 120 chr2L:8573113-8573233 1.0000 120 chr3R:20555069-20555189 1.0000 120 chrX:6037292-6037412 1.0000 120 chr3R:6504553-6504673 1.0000 120 chr3R:22041826-22041946 1.0000 120 chr2R:15478002-15478122 1.0000 120 chr3L:1414199-1414319 1.0000 120 chr2R:8951565-8951685 1.0000 120 chr3L:4313433-4313553 1.0000 120 chr3L:14195804-14195924 1.0000 120 chr3R:27937920-27938040 1.0000 120 chr2R:18433773-18433893 1.0000 120 chr2L:10565815-10565935 1.0000 120 chr3R:31744186-31744306 1.0000 120 chr2R:19492016-19492136 1.0000 120 chr3R:27209137-27209257 1.0000 120 chr3R:18393548-18393668 1.0000 120 chrX:16288555-16288675 1.0000 120 chr3L:14762382-14762502 1.0000 120 chr2L:858313-858433 1.0000 120 chr2R:18834895-18835015 1.0000 120 chr3R:15793524-15793644 1.0000 120 chr2R:16229963-16230083 1.0000 120 chr2L:20811406-20811526 1.0000 120 chr3L:3853054-3853174 1.0000 120 chr2R:15354495-15354615 1.0000 120 chr2L:4440925-4441045 1.0000 120 chr3R:23028645-23028765 1.0000 120 chr2R:18528511-18528631 1.0000 120 chr2R:24657144-24657264 1.0000 120 chr3R:4992418-4992538 1.0000 120 chr3R:31395328-31395448 1.0000 120 chr3R:25489178-25489298 1.0000 120 chr2L:13549253-13549373 1.0000 120 chrX:4202601-4202721 1.0000 120 chr2R:6524845-6524965 1.0000 120 chr3R:31169092-31169212 1.0000 120 chr3R:15263444-15263564 1.0000 120 chr2R:13054955-13055075 1.0000 120 chr2R:20257483-20257603 1.0000 120 chr3L:15563023-15563143 1.0000 120 chrX:9137316-9137436 1.0000 120 chrX:15384166-15384286 1.0000 120 chr3R:29869186-29869306 1.0000 120 chr2L:5876593-5876713 1.0000 120 chr3L:14780421-14780541 1.0000 120 chr2L:20945361-20945481 1.0000 120 chr2R:8914068-8914188 1.0000 120 chr2L:4838578-4838698 1.0000 120 chr2L:21787112-21787232 1.0000 120 chr3R:10884173-10884293 1.0000 120 chr3R:19858449-19858569 1.0000 120 chr3L:13189455-13189575 1.0000 120 chr2R:13587028-13587148 1.0000 120 chrX:11629105-11629225 1.0000 120 chr3L:7861100-7861220 1.0000 120 chr2R:6605954-6606074 1.0000 120 chr3R:20588452-20588572 1.0000 120 chr3R:22596599-22596719 1.0000 120 chr2R:20939872-20939992 1.0000 120 chr2L:3472366-3472486 1.0000 120 chr3L:5974666-5974786 1.0000 120 chr3L:2501956-2502076 1.0000 120 chr2R:23940181-23940301 1.0000 120 chr3R:10564457-10564577 1.0000 120 chrX:2149708-2149828 1.0000 120 chr3L:3767909-3768029 1.0000 120 chrX:3134623-3134743 1.0000 120 chrX:7001192-7001312 1.0000 120 chr2L:20881535-20881655 1.0000 120 chr3L:1479422-1479542 1.0000 120 chr3L:8986162-8986282 1.0000 120 chr2R:11427852-11427972 1.0000 120 chr2R:22511680-22511800 1.0000 120 chr3R:9605230-9605350 1.0000 120 chr3R:19226699-19226819 1.0000 120 chr2R:18147957-18148077 1.0000 120 chr3L:14634342-14634462 1.0000 120 chr2R:8080040-8080160 1.0000 120 chr3R:19023984-19024104 1.0000 120 chrX:13784551-13784671 1.0000 120 chr3L:1647442-1647562 1.0000 120 chr2R:24565570-24565690 1.0000 120 chr3L:4122564-4122684 1.0000 120 chr3R:23225432-23225552 1.0000 120 chr2R:12019244-12019364 1.0000 120 chr3R:17151767-17151887 1.0000 120 chr2L:5974337-5974457 1.0000 120 chr3R:21206084-21206204 1.0000 120 chr3L:613652-613772 1.0000 120 chr2L:5798151-5798271 1.0000 120 chr2L:20649973-20650093 1.0000 120 chr3L:17802325-17802445 1.0000 120 chr2L:2878877-2878997 1.0000 120 chr3R:6373786-6373906 1.0000 120 chr3L:19062830-19062950 1.0000 120 chr3L:3665494-3665614 1.0000 120 chr2R:24389228-24389348 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tup/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tup.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.193 G 0.194 T 0.312 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.193 G 0.194 T 0.312 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAAACAD MEME-1 width = 8 sites = 25 llr = 237 E-value = 4.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a8a:a4 pos.-specific C :a:2:a:: probability G a::::::4 matrix T :::::::2 bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 *** *** Relative 1.4 *** *** Entropy 1.2 ******* (13.7 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus C G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19858449-19858569 50 1.17e-05 CAAAGCCAAA GCAAACAG CAGTTGGGTA chr3L:14780421-14780541 24 1.17e-05 TTTTGCTTAG GCAAACAG CAACTGCGTG chr3R:6504553-6504673 7 1.17e-05 TGGCCA GCAAACAG AAGGCCCATA chrX:17473375-17473495 113 1.17e-05 tttaCACACA GCAAACAG chr2R:23180960-23181080 57 1.17e-05 TTTGTAAAAT GCAAACAG AACACGCAAC chr2R:24593733-24593853 60 1.17e-05 TTTACCCCCC GCAAACAG TGGAAAATCA chr3L:11286775-11286895 55 1.17e-05 ACCGTCTAGT GCAAACAG ACTGTTTGAG chr2L:5876593-5876713 52 2.98e-05 GTTGCCGTGC GCAAACAA ACAGTTAACA chr2R:16229963-16230083 68 2.98e-05 TGCAAACGTT GCAAACAA ATAACTAAAT chr3L:14762382-14762502 5 2.98e-05 ATCT GCAAACAA GTGTGAGTAA chr3R:27209137-27209257 38 2.98e-05 GCCACAAATT GCAAACAA AAACAAAGGC chr3L:224204-224324 21 2.98e-05 TCGAGTCGTC GCAAACAA AAACCCTGTG chr3R:13644794-13644914 26 2.98e-05 ACGCAGGGGA GCAAACAA GAGGACCATT chr3L:17458843-17458963 7 2.98e-05 CCAGGC GCAAACAA CAATTTTTGT chr3R:23028645-23028765 51 3.73e-05 AAAATTAGCT GCACACAG AAGATTTAAG chr3L:4353831-4353951 80 3.73e-05 GTCGCATGCC GCACACAG CGAAAAAAAA chr3L:13189455-13189575 3 5.60e-05 CT GCAAACAT ATTGTATAAT chr3L:1690909-1691029 2 5.60e-05 G GCAAACAT TTAGACAAAC chr2R:21049428-21049548 24 5.60e-05 CTGGCGATGA GCAAACAT TGCATAGCTA chr2L:2864703-2864823 66 5.60e-05 CGTCGGCTGT GCAAACAT TTGCATTTGC chr2R:22324780-22324900 35 5.60e-05 TAAACGATAA GCAAACAT TTGGAAATTC chr3L:4239580-4239700 84 6.76e-05 GCCCCGATAA GCACACAA TTCTTTGCTG chr3L:8347483-8347603 80 6.76e-05 CGCCAGCTGT GCACACAA CGTCGCGGTC chr3R:19798657-19798777 107 6.76e-05 ACCACTTAGG GCACACAA TCGGAA chr3R:19068058-19068178 38 9.12e-05 AATGGGTTAA GCAAACAC ACTCTCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19858449-19858569 1.2e-05 49_[+1]_63 chr3L:14780421-14780541 1.2e-05 23_[+1]_89 chr3R:6504553-6504673 1.2e-05 6_[+1]_106 chrX:17473375-17473495 1.2e-05 112_[+1] chr2R:23180960-23181080 1.2e-05 56_[+1]_56 chr2R:24593733-24593853 1.2e-05 59_[+1]_53 chr3L:11286775-11286895 1.2e-05 54_[+1]_58 chr2L:5876593-5876713 3e-05 51_[+1]_61 chr2R:16229963-16230083 3e-05 67_[+1]_45 chr3L:14762382-14762502 3e-05 4_[+1]_108 chr3R:27209137-27209257 3e-05 37_[+1]_75 chr3L:224204-224324 3e-05 20_[+1]_92 chr3R:13644794-13644914 3e-05 25_[+1]_87 chr3L:17458843-17458963 3e-05 6_[+1]_106 chr3R:23028645-23028765 3.7e-05 50_[+1]_62 chr3L:4353831-4353951 3.7e-05 79_[+1]_33 chr3L:13189455-13189575 5.6e-05 2_[+1]_110 chr3L:1690909-1691029 5.6e-05 1_[+1]_111 chr2R:21049428-21049548 5.6e-05 23_[+1]_89 chr2L:2864703-2864823 5.6e-05 65_[+1]_47 chr2R:22324780-22324900 5.6e-05 34_[+1]_78 chr3L:4239580-4239700 6.8e-05 83_[+1]_29 chr3L:8347483-8347603 6.8e-05 79_[+1]_33 chr3R:19798657-19798777 6.8e-05 106_[+1]_6 chr3R:19068058-19068178 9.1e-05 37_[+1]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAD width=8 seqs=25 chr3R:19858449-19858569 ( 50) GCAAACAG 1 chr3L:14780421-14780541 ( 24) GCAAACAG 1 chr3R:6504553-6504673 ( 7) GCAAACAG 1 chrX:17473375-17473495 ( 113) GCAAACAG 1 chr2R:23180960-23181080 ( 57) GCAAACAG 1 chr2R:24593733-24593853 ( 60) GCAAACAG 1 chr3L:11286775-11286895 ( 55) GCAAACAG 1 chr2L:5876593-5876713 ( 52) GCAAACAA 1 chr2R:16229963-16230083 ( 68) GCAAACAA 1 chr3L:14762382-14762502 ( 5) GCAAACAA 1 chr3R:27209137-27209257 ( 38) GCAAACAA 1 chr3L:224204-224324 ( 21) GCAAACAA 1 chr3R:13644794-13644914 ( 26) GCAAACAA 1 chr3L:17458843-17458963 ( 7) GCAAACAA 1 chr3R:23028645-23028765 ( 51) GCACACAG 1 chr3L:4353831-4353951 ( 80) GCACACAG 1 chr3L:13189455-13189575 ( 3) GCAAACAT 1 chr3L:1690909-1691029 ( 2) GCAAACAT 1 chr2R:21049428-21049548 ( 24) GCAAACAT 1 chr2L:2864703-2864823 ( 66) GCAAACAT 1 chr2R:22324780-22324900 ( 35) GCAAACAT 1 chr3L:4239580-4239700 ( 84) GCACACAA 1 chr3L:8347483-8347603 ( 80) GCACACAA 1 chr3R:19798657-19798777 ( 107) GCACACAA 1 chr3R:19068058-19068178 ( 38) GCAAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 4.8e-003 -1129 -1129 237 -1129 -1129 238 -1129 -1129 173 -1129 -1129 -1129 140 5 -1129 -1129 173 -1129 -1129 -1129 -1129 238 -1129 -1129 173 -1129 -1129 -1129 40 -226 89 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 4.8e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.040000 0.360000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAD MEME-1 regular expression -------------------------------------------------------------------------------- GCA[AC]ACA[AGT] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCACC MEME-2 width = 8 sites = 3 llr = 37 E-value = 5.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::a:: pos.-specific C aa:aa:aa probability G :::::::: matrix T :::::::: bits 2.4 ** ** ** 2.1 ** ** ** 1.9 ** ** ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5974337-5974457 2 4.71e-06 A CCACCACC TCCGGTGACA chr3L:20944328-20944448 93 4.71e-06 AACGGCAACA CCACCACC ATAAATGCTG chr2R:23997260-23997380 23 4.71e-06 TTATTCCGGG CCACCACC TTGTAGACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5974337-5974457 4.7e-06 1_[+2]_111 chr3L:20944328-20944448 4.7e-06 92_[+2]_20 chr2R:23997260-23997380 4.7e-06 22_[+2]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCACC width=8 seqs=3 chr2L:5974337-5974457 ( 2) CCACCACC 1 chr3L:20944328-20944448 ( 93) CCACCACC 1 chr2R:23997260-23997380 ( 23) CCACCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 5.1e+004 -823 237 -823 -823 -823 237 -823 -823 172 -823 -823 -823 -823 237 -823 -823 -823 237 -823 -823 172 -823 -823 -823 -823 237 -823 -823 -823 237 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 regular expression -------------------------------------------------------------------------------- CCACCACC -------------------------------------------------------------------------------- Time 13.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCCGCC MEME-3 width = 8 sites = 2 llr = 25 E-value = 7.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa5aa:aa probability G ::5::a:: matrix T :::::::: bits 2.4 ** ***** 2.1 ** ***** 1.9 ** ***** 1.7 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (18.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573821-16573941 58 3.88e-06 AACATTCGAA CCGCCGCC AACAACAATT chr2R:13723395-13723515 83 3.88e-06 TTCGAGTGTG CCCCCGCC ACCCGAAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573821-16573941 3.9e-06 57_[+3]_55 chr2R:13723395-13723515 3.9e-06 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCGCC width=8 seqs=2 chrX:16573821-16573941 ( 58) CCGCCGCC 1 chr2R:13723395-13723515 ( 83) CCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 7.7e+004 -765 237 -765 -765 -765 237 -765 -765 -765 137 136 -765 -765 237 -765 -765 -765 237 -765 -765 -765 -765 236 -765 -765 237 -765 -765 -765 237 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCGCC MEME-3 regular expression -------------------------------------------------------------------------------- CC[CG]CCGCC -------------------------------------------------------------------------------- Time 19.99 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCGCC MEME-4 width = 8 sites = 2 llr = 26 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaa:aa probability G :a:::a:: matrix T :::::::: bits 2.4 ******** 2.1 ******** 1.9 ******** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (19.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18147957-18148077 91 1.95e-06 CGGTGAAGAA CGCCCGCC CAAATTCAGT chr2L:519488-519608 28 1.95e-06 CACTCGTTAT CGCCCGCC ATGCATTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18147957-18148077 1.9e-06 90_[+4]_22 chr2L:519488-519608 1.9e-06 27_[+4]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCGCC width=8 seqs=2 chr2R:18147957-18148077 ( 91) CGCCCGCC 1 chr2L:519488-519608 ( 28) CGCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.6e+004 -765 237 -765 -765 -765 -765 236 -765 -765 237 -765 -765 -765 237 -765 -765 -765 237 -765 -765 -765 -765 236 -765 -765 237 -765 -765 -765 237 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCGCC MEME-4 regular expression -------------------------------------------------------------------------------- CGCCCGCC -------------------------------------------------------------------------------- Time 26.24 secs. ******************************************************************************** ******************************************************************************** MOTIF YSGCVSCA MEME-5 width = 8 sites = 21 llr = 192 E-value = 4.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::5::a pos.-specific C 44:a34a: probability G :6a:26:: matrix T 6::::::: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 ** ** Relative 1.4 *** *** Entropy 1.2 *** *** (13.2 bits) 1.0 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCAGCA consensus CC CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8914068-8914188 29 2.05e-05 TATCTCGATG TGGCAGCA CGCTCGGTGT chr3R:15092952-15093072 55 2.05e-05 GCAGCGGCAG CGGCAGCA ACGTGGCCCA chr3R:15804091-15804211 82 2.05e-05 GCGCTCAATG TGGCCGCA GAAAAATACC chr3R:27274587-27274707 8 2.05e-05 AACGGGA TGGCAGCA CTGCCAATCC chr3L:20944328-20944448 63 2.05e-05 AACAAATGAG CGGCAGCA GGCAGAATAA chr3L:3767909-3768029 84 2.86e-05 TGTGGTCGAG TGGCGGCA TAAAACTGCT chr2R:21709653-21709773 6 2.86e-05 TCTTC CGGCGGCA CAGTGAACGC chr2L:20881535-20881655 22 4.90e-05 AATTTGCATA TCGCAGCA GAAATTGCTT chr3R:29869186-29869306 86 4.90e-05 GCGCGGACTC TCGCCGCA TTTTTGCGTG chr2L:13549253-13549373 46 4.90e-05 GCACGTCCAC CCGCAGCA ACACTCGATG chr3R:18393548-18393668 21 4.90e-05 GATAAACAAG TCGCAGCA CTGAGGGAAA chrX:16320385-16320505 33 4.90e-05 GCTGCTGCGG TCGCAGCA ATTGTTACAT chr2R:18308459-18308579 105 4.90e-05 CGCACTGCGT CCGCCGCA CTGCAGGC chr3R:25489178-25489298 25 7.74e-05 GTCAAGCAGG CGGCCCCA CTTAACAGAC chr2L:18893031-18893151 108 7.74e-05 CCTTTTCCCG TGGCCCCA CACCC chr2L:3472366-3472486 100 8.54e-05 CCTGTGCAGA TGGCGCCA CCATGACGCG chrX:1392918-1393038 21 8.54e-05 GCTCTTCATT TGGCGCCA AACGAATTGG chr3R:19798657-19798777 30 8.54e-05 GCTTATCGTG TGGCGCCA GGCGAGCCTA chr3R:5015328-5015448 110 1.06e-04 ATTATAATTA CCGCACCA ACA chr2L:413175-413295 84 1.06e-04 CGTTTTTGTA CCGCCCCA CGTTTTTGTC chr3R:4381243-4381363 41 1.06e-04 GATGCCTCTA TCGCACCA TCGATGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8914068-8914188 2.1e-05 28_[+5]_84 chr3R:15092952-15093072 2.1e-05 54_[+5]_58 chr3R:15804091-15804211 2.1e-05 81_[+5]_31 chr3R:27274587-27274707 2.1e-05 7_[+5]_105 chr3L:20944328-20944448 2.1e-05 62_[+5]_50 chr3L:3767909-3768029 2.9e-05 83_[+5]_29 chr2R:21709653-21709773 2.9e-05 5_[+5]_107 chr2L:20881535-20881655 4.9e-05 21_[+5]_91 chr3R:29869186-29869306 4.9e-05 85_[+5]_27 chr2L:13549253-13549373 4.9e-05 45_[+5]_67 chr3R:18393548-18393668 4.9e-05 20_[+5]_92 chrX:16320385-16320505 4.9e-05 32_[+5]_80 chr2R:18308459-18308579 4.9e-05 104_[+5]_8 chr3R:25489178-25489298 7.7e-05 24_[+5]_88 chr2L:18893031-18893151 7.7e-05 107_[+5]_5 chr2L:3472366-3472486 8.5e-05 99_[+5]_13 chrX:1392918-1393038 8.5e-05 20_[+5]_92 chr3R:19798657-19798777 8.5e-05 29_[+5]_83 chr3R:5015328-5015448 0.00011 109_[+5]_3 chr2L:413175-413295 0.00011 83_[+5]_29 chr3R:4381243-4381363 0.00011 40_[+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSGCVSCA width=8 seqs=21 chr2R:8914068-8914188 ( 29) TGGCAGCA 1 chr3R:15092952-15093072 ( 55) CGGCAGCA 1 chr3R:15804091-15804211 ( 82) TGGCCGCA 1 chr3R:27274587-27274707 ( 8) TGGCAGCA 1 chr3L:20944328-20944448 ( 63) CGGCAGCA 1 chr3L:3767909-3768029 ( 84) TGGCGGCA 1 chr2R:21709653-21709773 ( 6) CGGCGGCA 1 chr2L:20881535-20881655 ( 22) TCGCAGCA 1 chr3R:29869186-29869306 ( 86) TCGCCGCA 1 chr2L:13549253-13549373 ( 46) CCGCAGCA 1 chr3R:18393548-18393668 ( 21) TCGCAGCA 1 chrX:16320385-16320505 ( 33) TCGCAGCA 1 chr2R:18308459-18308579 ( 105) CCGCCGCA 1 chr3R:25489178-25489298 ( 25) CGGCCCCA 1 chr2L:18893031-18893151 ( 108) TGGCCCCA 1 chr2L:3472366-3472486 ( 100) TGGCGCCA 1 chrX:1392918-1393038 ( 21) TGGCGCCA 1 chr3R:19798657-19798777 ( 30) TGGCGCCA 1 chr3R:5015328-5015448 ( 110) CCGCACCA 1 chr2L:413175-413295 ( 84) CCGCCCCA 1 chr3R:4381243-4381363 ( 41) TCGCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 4.4e+005 -1104 98 -1104 99 -1104 115 156 -1104 -1104 -1104 237 -1104 -1104 238 -1104 -1104 66 57 30 -1104 -1104 98 168 -1104 -1104 238 -1104 -1104 173 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.4e+005 0.000000 0.380952 0.000000 0.619048 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.476190 0.285714 0.238095 0.000000 0.000000 0.380952 0.619048 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSGCVSCA MEME-5 regular expression -------------------------------------------------------------------------------- [TC][GC]GC[ACG][GC]CA -------------------------------------------------------------------------------- Time 32.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18884924-18885044 2.65e-01 120 chr2L:519488-519608 6.86e-04 27_[+4(1.95e-06)]_85 chr2L:14534019-14534139 6.60e-01 120 chr2L:18906688-18906808 7.01e-01 120 chr2R:15733315-15733435 1.60e-01 120 chr3L:6342362-6342482 4.94e-01 120 chr2L:18878492-18878612 7.92e-01 120 chr3R:16243009-16243129 7.76e-01 120 chrX:22433033-22433153 1.00e+00 120 chr2R:23997260-23997380 5.53e-04 22_[+2(4.71e-06)]_90 chr2R:22324780-22324900 2.62e-01 34_[+1(5.60e-05)]_78 chr2R:13723395-13723515 1.42e-05 82_[+3(3.88e-06)]_30 chr2L:3601034-3601154 7.27e-02 120 chr3L:11286775-11286895 3.14e-02 54_[+1(1.17e-05)]_58 chr3R:16254486-16254606 9.31e-01 120 chr2L:117879-117999 7.15e-01 120 chr3R:19798657-19798777 5.49e-03 29_[+5(8.54e-05)]_69_[+1(6.76e-05)]_\ 6 chr2R:16178670-16178790 1.00e+00 120 chrX:16573821-16573941 1.95e-05 57_[+3(3.88e-06)]_55 chr2R:18693249-18693369 8.91e-01 120 chr2L:18893031-18893151 2.81e-02 107_[+5(7.74e-05)]_5 chrX:10115668-10115788 4.47e-03 19_[+2(2.65e-05)]_93 chr2L:3013027-3013147 3.91e-01 120 chr3L:3903149-3903269 6.20e-01 120 chr2R:19569852-19569972 7.73e-01 120 chr2L:8545830-8545950 5.28e-01 120 chr3L:13022698-13022818 9.79e-01 120 chr3L:19040469-19040589 4.60e-01 120 chr3R:4381243-4381363 3.04e-02 120 chr2L:4346835-4346955 5.38e-05 109_[+3(1.00e-05)]_3 chr2L:16817754-16817874 7.73e-01 120 chr3L:17458843-17458963 1.13e-01 6_[+1(2.98e-05)]_106 chr3R:31060367-31060487 4.20e-01 120 chr2R:11106065-11106185 1.47e-01 120 chr3R:21499611-21499731 3.66e-01 120 chr3L:9020594-9020714 9.22e-01 120 chr3R:10651201-10651321 1.04e-02 120 chr2L:18907498-18907618 9.14e-01 120 chr2R:18308459-18308579 4.68e-04 104_[+5(4.90e-05)]_8 chr3R:26280504-26280624 9.14e-01 120 chr3L:14055833-14055953 5.67e-01 120 chr3L:12606388-12606508 7.24e-01 120 chr2L:413175-413295 1.57e-02 120 chr3L:18242230-18242350 7.48e-01 120 chr2L:11038214-11038334 2.17e-01 120 chr2R:20155475-20155595 9.49e-01 120 chr3L:11402497-11402617 9.77e-01 120 chr2L:11417611-11417731 9.94e-01 120 chr2L:2872741-2872861 4.00e-01 120 chr2R:21662363-21662483 4.25e-01 120 chrX:7333327-7333447 1.25e-01 120 chr2R:23189328-23189448 1.10e-01 120 chr3R:21161838-21161958 3.58e-01 120 chr2R:22738391-22738511 7.64e-01 120 chrX:17582812-17582932 8.08e-01 120 chr2L:5196854-5196974 9.58e-01 120 chr3R:14285153-14285273 1.71e-02 120 chr2L:2864703-2864823 1.02e-02 65_[+1(5.60e-05)]_47 chr3L:5809670-5809790 9.65e-01 120 chr2R:10439116-10439236 4.93e-01 120 chr2R:16837895-16838015 2.90e-01 120 chrX:3019682-3019802 7.70e-01 120 chr2L:19452462-19452582 3.46e-01 120 chr3R:5054821-5054941 2.92e-02 120 chr3L:4522099-4522219 7.64e-01 120 chr3R:19068058-19068178 1.33e-01 37_[+1(9.12e-05)]_75 chr2L:838143-838263 8.37e-01 120 chr3L:10862092-10862212 5.81e-01 120 chr3L:3381983-3382103 9.41e-01 120 chr2R:16170816-16170936 2.20e-01 120 chr2L:8528542-8528662 9.97e-01 120 chr3R:26106000-26106120 9.99e-01 120 chr3L:15794441-15794561 1.00e+00 120 chr2L:18505700-18505820 1.57e-01 120 chrX:3357803-3357923 7.94e-01 120 chr2L:2357462-2357582 9.80e-01 120 chr4:1053858-1053978 8.04e-01 120 chr2L:18895219-18895339 4.19e-01 120 chrX:22837514-22837634 1.97e-01 120 chr3L:17659303-17659423 5.72e-01 120 chr2R:13968075-13968195 9.98e-01 120 chr3L:20944328-20944448 1.28e-06 13_[+1(2.98e-05)]_15_[+1(2.98e-05)]_\ 5_[+1(2.98e-05)]_5_[+5(2.05e-05)]_22_[+2(4.71e-06)]_20 chr2R:24593733-24593853 3.04e-04 59_[+1(1.17e-05)]_53 chr3R:15792538-15792658 8.11e-01 120 chr3R:29039836-29039956 3.53e-01 120 chr3L:20954187-20954307 5.52e-01 120 chr3R:27274587-27274707 1.05e-01 7_[+5(2.05e-05)]_105 chr2L:1710498-1710618 9.95e-01 120 chr3R:10689006-10689126 8.38e-01 120 chr3L:8925829-8925949 1.00e+00 120 chr3L:13450278-13450398 1.00e+00 120 chr3R:15804091-15804211 2.96e-02 81_[+5(2.05e-05)]_31 chr2R:13430097-13430217 6.17e-01 120 chrX:3188567-3188687 1.00e+00 120 chr2L:1837884-1838004 9.55e-01 120 chr2R:23868750-23868870 3.90e-01 120 chr3L:8584244-8584364 6.43e-01 120 chr3R:28587021-28587141 9.67e-01 120 chr2R:18774899-18775019 9.36e-01 120 chr3R:13644794-13644914 1.87e-01 25_[+1(2.98e-05)]_87 chr3R:18243884-18244004 8.45e-01 120 chr3L:14956473-14956593 1.87e-01 120 chr2R:15813382-15813502 3.88e-01 120 chr3R:23921855-23921975 9.99e-01 120 chr2R:23180960-23181080 5.20e-02 56_[+1(1.17e-05)]_56 chr2L:16324797-16324917 3.23e-01 120 chr3L:12350424-12350544 9.99e-01 120 chr2L:20807802-20807922 1.41e-01 6_[+1(9.12e-05)]_106 chr3L:224204-224324 1.61e-02 20_[+1(2.98e-05)]_92 chr2L:18900003-18900123 9.52e-01 120 chr2R:9252056-9252176 8.67e-01 120 chr2R:21049428-21049548 3.94e-01 23_[+1(5.60e-05)]_89 chr2L:22036949-22037069 6.43e-01 120 chr2L:1150706-1150826 4.55e-04 120 chrX:17473375-17473495 9.35e-02 112_[+1(1.17e-05)] chr2L:7339728-7339848 1.88e-01 120 chr3R:10140360-10140480 2.19e-01 120 chrX:11108324-11108444 3.94e-02 120 chr3R:15091929-15092049 4.76e-02 120 chr2R:20319554-20319674 9.86e-01 120 chr2L:12372536-12372656 7.80e-01 120 chr3L:21047069-21047189 9.77e-01 120 chr3L:4353831-4353951 1.23e-02 79_[+1(3.73e-05)]_33 chr2R:21709653-21709773 1.67e-02 5_[+5(2.86e-05)]_107 chr3L:8347483-8347603 3.68e-04 79_[+1(6.76e-05)]_33 chr2L:16317908-16318028 8.49e-01 120 chr3R:24809709-24809829 2.18e-01 120 chrX:16320385-16320505 2.55e-02 32_[+5(4.90e-05)]_80 chr3R:8744325-8744445 9.99e-01 120 chr3L:19861152-19861272 5.71e-01 120 chr2R:23577435-23577555 9.99e-01 120 chr2R:11469618-11469738 2.13e-01 120 chr3R:20276123-20276243 6.49e-01 120 chr3R:23176862-23176982 5.59e-01 120 chr3R:22147648-22147768 4.04e-01 120 chr3L:4239580-4239700 2.48e-03 83_[+1(6.76e-05)]_29 chr3L:8395792-8395912 9.97e-01 120 chr2R:9109705-9109825 9.99e-01 120 chr2R:9087659-9087779 9.77e-01 120 chr3R:15676252-15676372 5.99e-01 120 chr3R:15092952-15093072 2.84e-02 54_[+5(2.05e-05)]_58 chrX:1392918-1393038 3.22e-02 20_[+5(8.54e-05)]_92 chr3L:13197707-13197827 2.06e-01 120 chr3R:21850342-21850462 6.95e-01 120 chr3L:642903-643023 5.77e-01 120 chr3R:28590637-28590757 4.70e-01 120 chrX:18900096-18900216 9.99e-01 120 chr3R:23729181-23729301 2.08e-01 120 chr2L:7813440-7813560 2.19e-01 120 chr3R:5015328-5015448 6.93e-02 120 chr3L:1690909-1691029 2.10e-01 1_[+1(5.60e-05)]_111 chr2L:11203766-11203886 8.81e-01 120 chr2L:8573113-8573233 1.24e-02 120 chr3R:20555069-20555189 4.88e-01 120 chrX:6037292-6037412 9.99e-01 120 chr3R:6504553-6504673 5.26e-03 6_[+1(1.17e-05)]_106 chr3R:22041826-22041946 8.18e-01 120 chr2R:15478002-15478122 9.79e-01 120 chr3L:1414199-1414319 4.36e-01 120 chr2R:8951565-8951685 3.68e-01 120 chr3L:4313433-4313553 4.75e-01 120 chr3L:14195804-14195924 9.14e-01 120 chr3R:27937920-27938040 9.15e-01 120 chr2R:18433773-18433893 9.88e-01 120 chr2L:10565815-10565935 9.18e-01 120 chr3R:31744186-31744306 2.59e-02 120 chr2R:19492016-19492136 6.27e-01 120 chr3R:27209137-27209257 2.79e-02 37_[+1(2.98e-05)]_75 chr3R:18393548-18393668 2.45e-01 20_[+5(4.90e-05)]_92 chrX:16288555-16288675 6.28e-01 120 chr3L:14762382-14762502 1.07e-01 4_[+1(2.98e-05)]_108 chr2L:858313-858433 7.80e-01 120 chr2R:18834895-18835015 9.63e-01 120 chr3R:15793524-15793644 2.55e-01 120 chr2R:16229963-16230083 2.83e-01 67_[+1(2.98e-05)]_45 chr2L:20811406-20811526 8.18e-01 120 chr3L:3853054-3853174 9.98e-01 120 chr2R:15354495-15354615 6.24e-02 120 chr2L:4440925-4441045 8.83e-01 120 chr3R:23028645-23028765 1.60e-01 50_[+1(3.73e-05)]_62 chr2R:18528511-18528631 5.54e-01 120 chr2R:24657144-24657264 8.17e-01 120 chr3R:4992418-4992538 6.34e-01 120 chr3R:31395328-31395448 5.86e-01 120 chr3R:25489178-25489298 7.20e-02 24_[+5(7.74e-05)]_88 chr2L:13549253-13549373 7.77e-03 45_[+5(4.90e-05)]_67 chrX:4202601-4202721 9.95e-01 120 chr2R:6524845-6524965 7.75e-01 120 chr3R:31169092-31169212 3.38e-01 120 chr3R:15263444-15263564 5.17e-01 120 chr2R:13054955-13055075 9.35e-01 120 chr2R:20257483-20257603 1.00e+00 120 chr3L:15563023-15563143 7.65e-01 120 chrX:9137316-9137436 8.26e-01 120 chrX:15384166-15384286 9.93e-01 120 chr3R:29869186-29869306 1.42e-02 85_[+5(4.90e-05)]_27 chr2L:5876593-5876713 7.19e-03 51_[+1(2.98e-05)]_61 chr3L:14780421-14780541 2.23e-02 23_[+1(1.17e-05)]_89 chr2L:20945361-20945481 9.50e-01 120 chr2R:8914068-8914188 6.77e-02 28_[+5(2.05e-05)]_84 chr2L:4838578-4838698 9.99e-01 120 chr2L:21787112-21787232 7.40e-01 120 chr3R:10884173-10884293 1.00e+00 120 chr3R:19858449-19858569 2.00e-02 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************