******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ttk.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:21047856-21047976 1.0000 120 chr3R:23056252-23056372 1.0000 120 chrX:9586766-9586886 1.0000 120 chr2R:20273450-20273570 1.0000 120 chrX:5714925-5715045 1.0000 120 chr2R:6758223-6758343 1.0000 120 chr3L:20400654-20400774 1.0000 120 chr2L:20788189-20788309 1.0000 120 chr2L:543938-544058 1.0000 120 chr3R:29221307-29221427 1.0000 120 chr2L:6369425-6369545 1.0000 120 chr2R:20275296-20275416 1.0000 120 chr3L:27093976-27094096 1.0000 120 chrX:6869333-6869453 1.0000 120 chr3L:8345321-8345441 1.0000 120 chrX:17146668-17146788 1.0000 120 chr3L:3162723-3162843 1.0000 120 chrX:5902843-5902963 1.0000 120 chr3L:1667562-1667682 1.0000 120 chr2L:11989349-11989469 1.0000 120 chr3R:4437956-4438076 1.0000 120 chr2R:8238495-8238615 1.0000 120 chr2R:17847624-17847744 1.0000 120 chr3R:9007397-9007517 1.0000 120 chr2L:6970952-6971072 1.0000 120 chr3R:18252015-18252135 1.0000 120 chr3R:5482929-5483049 1.0000 120 chr2L:18986238-18986358 1.0000 120 chr2R:22076735-22076855 1.0000 120 chr3L:8677912-8678032 1.0000 120 chr2L:13397532-13397652 1.0000 120 chrX:13829009-13829129 1.0000 120 chr2L:18687966-18688086 1.0000 120 chr3R:24232053-24232173 1.0000 120 chrX:1477632-1477752 1.0000 120 chr3L:4121353-4121473 1.0000 120 chr2R:17666841-17666961 1.0000 120 chr3R:15997032-15997152 1.0000 120 chr3R:15995101-15995221 1.0000 120 chrX:18847243-18847363 1.0000 120 chr2R:21623606-21623726 1.0000 120 chr3L:12525686-12525806 1.0000 120 chr2L:10206107-10206227 1.0000 120 chrX:9587059-9587179 1.0000 120 chr2R:8239057-8239177 1.0000 120 chrX:7937162-7937282 1.0000 120 chr2L:1184697-1184817 1.0000 120 chr3L:3378714-3378834 1.0000 120 chr3R:4820343-4820463 1.0000 120 chr3L:3379034-3379154 1.0000 120 chr2R:17847889-17848009 1.0000 120 chr3R:23197106-23197226 1.0000 120 chr3L:8601867-8601987 1.0000 120 chr3L:6214675-6214795 1.0000 120 chrX:15836595-15836715 1.0000 120 chr3R:22380651-22380771 1.0000 120 chr2L:12821160-12821280 1.0000 120 chrX:6688144-6688264 1.0000 120 chr3R:12407189-12407309 1.0000 120 chrX:764208-764328 1.0000 120 chrX:20393237-20393357 1.0000 120 chr2L:17411135-17411255 1.0000 120 chr2L:13177689-13177809 1.0000 120 chr3R:4333261-4333381 1.0000 120 chr2R:6022509-6022629 1.0000 120 chrX:8710432-8710552 1.0000 120 chrX:15868768-15868888 1.0000 120 chrX:2081304-2081424 1.0000 120 chrX:11874251-11874371 1.0000 120 chr2R:12345608-12345728 1.0000 120 chr2R:16164721-16164841 1.0000 120 chr2L:8673627-8673747 1.0000 120 chr3R:29862929-29863049 1.0000 120 chr2L:15008565-15008685 1.0000 120 chr2L:1150039-1150159 1.0000 120 chr3R:4397265-4397385 1.0000 120 chrX:1052229-1052349 1.0000 120 chr2R:13806264-13806384 1.0000 120 chr2L:16739559-16739679 1.0000 120 chrX:6655732-6655852 1.0000 120 chrX:16802501-16802621 1.0000 120 chrX:9154809-9154929 1.0000 120 chrX:4912846-4912966 1.0000 120 chr3R:22685683-22685803 1.0000 120 chrX:15747539-15747659 1.0000 120 chr3R:21072704-21072824 1.0000 120 chr2L:551066-551186 1.0000 120 chrX:645341-645461 1.0000 120 chr3L:2588474-2588594 1.0000 120 chr3R:24232940-24233060 1.0000 120 chr3R:15995982-15996102 1.0000 120 chrX:19601161-19601281 1.0000 120 chrX:21318647-21318767 1.0000 120 chr3L:3050685-3050805 1.0000 120 chr3L:2265041-2265161 1.0000 120 chr2R:17534663-17534783 1.0000 120 chr3R:30279036-30279156 1.0000 120 chr2R:13857810-13857930 1.0000 120 chrX:9083441-9083561 1.0000 120 chrX:21387163-21387283 1.0000 120 chr3L:2170276-2170396 1.0000 120 chrX:17861630-17861750 1.0000 120 chr3R:24232653-24232773 1.0000 120 chr3L:19447977-19448097 1.0000 120 chrX:2147113-2147233 1.0000 120 chr3R:8817192-8817312 1.0000 120 chr2L:568912-569032 1.0000 120 chrX:15763714-15763834 1.0000 120 chr2L:12000507-12000627 1.0000 120 chrX:11855618-11855738 1.0000 120 chr3R:17150971-17151091 1.0000 120 chr2L:19431448-19431568 1.0000 120 chr2R:18126849-18126969 1.0000 120 chr2R:18973702-18973822 1.0000 120 chrX:8406129-8406249 1.0000 120 chr2R:22073805-22073925 1.0000 120 chrX:20161854-20161974 1.0000 120 chr3L:3227058-3227178 1.0000 120 chr3R:15358008-15358128 1.0000 120 chr2L:10769214-10769334 1.0000 120 chr2R:24196737-24196857 1.0000 120 chr2R:10532633-10532753 1.0000 120 chr2L:299191-299311 1.0000 120 chrX:7109306-7109426 1.0000 120 chr3R:11231140-11231260 1.0000 120 chr3R:12698473-12698593 1.0000 120 chr2L:1154511-1154631 1.0000 120 chr3L:832546-832666 1.0000 120 chrX:13398386-13398506 1.0000 120 chrX:21345914-21346034 1.0000 120 chr2R:23367414-23367534 1.0000 120 chr3R:18224690-18224810 1.0000 120 chr3R:4432281-4432401 1.0000 120 chrX:5431554-5431674 1.0000 120 chr2L:13218984-13219104 1.0000 120 chrX:11356813-11356933 1.0000 120 chr3R:21205451-21205571 1.0000 120 chr2L:11107585-11107705 1.0000 120 chrX:21052363-21052483 1.0000 120 chrX:18831107-18831227 1.0000 120 chr3R:23752066-23752186 1.0000 120 chrX:2544288-2544408 1.0000 120 chr3R:8672836-8672956 1.0000 120 chr3R:13383422-13383542 1.0000 120 chr2R:18179457-18179577 1.0000 120 chrX:17859988-17860108 1.0000 120 chr2L:22128988-22129108 1.0000 120 chr3R:20327257-20327377 1.0000 120 chrX:14237336-14237456 1.0000 120 chrX:2609454-2609574 1.0000 120 chr3R:21098549-21098669 1.0000 120 chrX:10083644-10083764 1.0000 120 chr3R:15195451-15195571 1.0000 120 chr3R:21063535-21063655 1.0000 120 chr2L:21167708-21167828 1.0000 120 chrX:6372180-6372300 1.0000 120 chr2L:818702-818822 1.0000 120 chr3R:11678860-11678980 1.0000 120 chrX:4320245-4320365 1.0000 120 chr3L:1314674-1314794 1.0000 120 chr2L:1180675-1180795 1.0000 120 chrX:8099816-8099936 1.0000 120 chr2L:13792091-13792211 1.0000 120 chr3R:19645836-19645956 1.0000 120 chr2L:1183237-1183357 1.0000 120 chr2R:18659658-18659778 1.0000 120 chr2L:11119277-11119397 1.0000 120 chr3R:20030677-20030797 1.0000 120 chr2L:15752979-15753099 1.0000 120 chrX:15503171-15503291 1.0000 120 chr2R:10820648-10820768 1.0000 120 chr2L:1168687-1168807 1.0000 120 chr2R:7804393-7804513 1.0000 120 chr2R:12918089-12918209 1.0000 120 chr2L:13369744-13369864 1.0000 120 chr2L:5008663-5008783 1.0000 120 chrX:4685658-4685778 1.0000 120 chr3R:12996542-12996662 1.0000 120 chr2L:18618445-18618565 1.0000 120 chrX:11135687-11135807 1.0000 120 chr3R:26043459-26043579 1.0000 120 chr3R:26724473-26724593 1.0000 120 chr2L:869261-869381 1.0000 120 chr2R:14505551-14505671 1.0000 120 chrX:15757499-15757619 1.0000 120 chr3R:8802380-8802500 1.0000 120 chr2L:1152439-1152559 1.0000 120 chr3L:22076844-22076964 1.0000 120 chr3R:5567984-5568104 1.0000 120 chr3R:9576824-9576944 1.0000 120 chr3R:26231432-26231552 1.0000 120 chr3L:16111210-16111330 1.0000 120 chr2L:12693456-12693576 1.0000 120 chr3R:4433176-4433296 1.0000 120 chr3L:4104428-4104548 1.0000 120 chr3L:21032785-21032905 1.0000 120 chrX:19614379-19614499 1.0000 120 chr2R:12200017-12200137 1.0000 120 chr3R:29253229-29253349 1.0000 120 chr2L:11991391-11991511 1.0000 120 chr2L:21164231-21164351 1.0000 120 chrX:5623268-5623388 1.0000 120 chr2R:7963812-7963932 1.0000 120 chr3R:9807691-9807811 1.0000 120 chr3R:8350470-8350590 1.0000 120 chr2L:19052859-19052979 1.0000 120 chr3R:8303481-8303601 1.0000 120 chr2L:851947-852067 1.0000 120 chr2R:10818634-10818754 1.0000 120 chr3R:6457789-6457909 1.0000 120 chrX:16788383-16788503 1.0000 120 chrX:628040-628160 1.0000 120 chr3R:29805816-29805936 1.0000 120 chrX:6347845-6347965 1.0000 120 chr2R:18136257-18136377 1.0000 120 chr3L:20301395-20301515 1.0000 120 chr3R:5743338-5743458 1.0000 120 chr2L:18690280-18690400 1.0000 120 chr3R:12444582-12444702 1.0000 120 chr2R:16788330-16788450 1.0000 120 chr3L:7359165-7359285 1.0000 120 chr3L:1533385-1533505 1.0000 120 chr2L:1179858-1179978 1.0000 120 chr2L:10857294-10857414 1.0000 120 chr2R:14215954-14216074 1.0000 120 chr2L:12428879-12428999 1.0000 120 chrX:20170516-20170636 1.0000 120 chr2R:18415335-18415455 1.0000 120 chr2R:11900338-11900458 1.0000 120 chrX:21066513-21066633 1.0000 120 chrX:5617783-5617903 1.0000 120 chrX:19749623-19749743 1.0000 120 chr3L:20431446-20431566 1.0000 120 chr2R:12594057-12594177 1.0000 120 chr2L:19492000-19492120 1.0000 120 chr2R:7813193-7813313 1.0000 120 chrX:1877928-1878048 1.0000 120 chrX:16939368-16939488 1.0000 120 chr3L:1946931-1947051 1.0000 120 chr3R:31744898-31745018 1.0000 120 chr3R:27113177-27113297 1.0000 120 chr3R:28810562-28810682 1.0000 120 chr2R:6877997-6878117 1.0000 120 chr2L:133035-133155 1.0000 120 chr2R:22853269-22853389 1.0000 120 chr2R:21687001-21687121 1.0000 120 chr3R:4399069-4399189 1.0000 120 chrX:15463154-15463274 1.0000 120 chr2L:6917885-6918005 1.0000 120 chr2L:9892002-9892122 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ttk/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ttk.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.267 G 0.269 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.267 G 0.269 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCWGCWGC MEME-1 width = 8 sites = 42 llr = 358 E-value = 6.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::5::3:: pos.-specific C :a::a::5 probability G a::a::a2 matrix T ::5::7:3 bits 2.1 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** **** Entropy 1.1 ******* (12.3 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus A A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4399069-4399189 85 1.99e-05 TTAAGGGATA GCTGCTGC AGCACAGCTT chrX:1877928-1878048 103 1.99e-05 TCGTTGGATC GCTGCTGC AAGGTATATG chr3R:8802380-8802500 102 1.99e-05 CCCTGGATGA GCTGCTGC CCCTCAACAT chr2L:11119277-11119397 24 1.99e-05 ATGTTCCGCA GCTGCTGC TTAACAATAG chr2L:22128988-22129108 96 1.99e-05 TCCCACCAAC GCTGCTGC TGTGGCTGGC chrX:11356813-11356933 50 1.99e-05 TGGGCAATCC GCTGCTGC AGCCGCCACC chr3R:15358008-15358128 113 1.99e-05 ATGTGCCTGA GCTGCTGC chrX:7937162-7937282 113 1.99e-05 TGTGGCGGCC GCTGCTGC chrX:13829009-13829129 8 1.99e-05 GGCGTGT GCTGCTGC AGTTTGGCCA chr3L:20400654-20400774 85 1.99e-05 TCCTCGTCGT GCTGCTGC AGCTGAAAGT chrX:20170516-20170636 78 3.99e-05 AGCACTCCCT GCAGCTGC CCCACCTGCC chr2L:21164231-21164351 111 3.99e-05 GGTAGTGGGG GCAGCTGC GT chr3L:16111210-16111330 47 3.99e-05 TCGCAGTAGT GCAGCTGC TGGGGACGTG chr2R:23367414-23367534 67 3.99e-05 ATCTGCAGGA GCAGCTGC AAGTGCGGGG chrX:8710432-8710552 30 3.99e-05 TACTTTCTAT GCAGCTGC ATATATTATT chr2L:13177689-13177809 65 3.99e-05 GCGACGAGGA GCAGCTGC ATCGATTTTA chrX:21047856-21047976 8 3.99e-05 TTGCTCA GCAGCTGC AGCGGGAAAC chrX:628040-628160 106 5.72e-05 CACTTTAATC GCTGCTGT AAAGCCA chr3R:21098549-21098669 112 5.72e-05 TTGACCGGTG GCTGCTGT G chr2R:10532633-10532753 91 5.72e-05 CTGGTCAATG GCTGCTGT TGTTGGGTCG chr3R:23197106-23197226 7 9.45e-05 TCGACC GCAGCTGt acatacactc chrX:15463154-15463274 66 1.14e-04 AGACGCTGGC GCAGCAGC ACGAGGTGCA chr2R:18415335-18415455 23 1.14e-04 CTACCATCGA GCAGCAGC CCATCGCTCT chr2R:16788330-16788450 100 1.14e-04 CACAACAGCA GCAGCAGC CAACTCGGGT chr2R:22073805-22073925 8 1.14e-04 ACGTCCT GCAGCAGC TTGCGATAGT chr2L:10206107-10206227 101 1.14e-04 TAGCAGGTAC GCAGCAGC AGTTCGCAGG chr3R:24232053-24232173 110 1.14e-04 CCCACGGCCA GCAGCAGC aca chr3R:28810562-28810682 1 1.35e-04 . GCTGCTGG TGGAGCTGCT chr3L:21032785-21032905 17 1.35e-04 AGTCTATGCC GCTGCTGG AACAGCTTAC chr2L:5008663-5008783 57 1.35e-04 GGCGACAGGA GCTGCTGG GGCAGCAGTG chr2R:22076735-22076855 76 1.35e-04 AAGACGACAC GCTGCTGG ACATGGTGCA chr2R:18126849-18126969 102 1.55e-04 CACTTCAAGG GCAGCTGG GCGCACAAGT chr3R:17150971-17151091 96 1.55e-04 AGTTGTTAAT GCAGCTGG CTGGTTCGGT chrX:2147113-2147233 90 1.55e-04 ACTTCATCCA GCAGCTGG TGCCGCTGCT chr3R:8672836-8672956 35 1.72e-04 TCCCACTGCG GCTGCAGT ATCGGTGAGG chr3R:11231140-11231260 76 1.72e-04 ACCGGCTGTT GCTGCAGT TTCTGTTGCT chr3R:30279036-30279156 12 1.72e-04 agcatcaact gctgcagT TCTACGCGGA chr2L:18986238-18986358 1 1.72e-04 . GCTGCAGT AAATGCAATT chr2L:18690280-18690400 101 1.89e-04 CTCCCAGCCC GCAGCAGT GGAAAATGTC chr3R:12698473-12698593 41 1.89e-04 CGCTTCCAAT GCAGCAGT GTGGCCTCGC chr3L:3227058-3227178 73 1.89e-04 agcagcacaa gcagcagt tgtgcccgcc chr2L:11989349-11989469 91 2.09e-04 ATCACGCCGC GCTGCAGG GCCCGCTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4399069-4399189 2e-05 84_[+1]_28 chrX:1877928-1878048 2e-05 102_[+1]_10 chr3R:8802380-8802500 2e-05 101_[+1]_11 chr2L:11119277-11119397 2e-05 23_[+1]_89 chr2L:22128988-22129108 2e-05 95_[+1]_17 chrX:11356813-11356933 2e-05 49_[+1]_63 chr3R:15358008-15358128 2e-05 112_[+1] chrX:7937162-7937282 2e-05 112_[+1] chrX:13829009-13829129 2e-05 7_[+1]_105 chr3L:20400654-20400774 2e-05 84_[+1]_28 chrX:20170516-20170636 4e-05 77_[+1]_35 chr2L:21164231-21164351 4e-05 110_[+1]_2 chr3L:16111210-16111330 4e-05 46_[+1]_66 chr2R:23367414-23367534 4e-05 66_[+1]_46 chrX:8710432-8710552 4e-05 29_[+1]_83 chr2L:13177689-13177809 4e-05 64_[+1]_48 chrX:21047856-21047976 4e-05 7_[+1]_105 chrX:628040-628160 5.7e-05 105_[+1]_7 chr3R:21098549-21098669 5.7e-05 111_[+1]_1 chr2R:10532633-10532753 5.7e-05 90_[+1]_22 chr3R:23197106-23197226 9.4e-05 6_[+1]_106 chrX:15463154-15463274 0.00011 65_[+1]_47 chr2R:18415335-18415455 0.00011 22_[+1]_90 chr2R:16788330-16788450 0.00011 99_[+1]_13 chr2R:22073805-22073925 0.00011 7_[+1]_105 chr2L:10206107-10206227 0.00011 100_[+1]_12 chr3R:24232053-24232173 0.00011 109_[+1]_3 chr3R:28810562-28810682 0.00013 [+1]_112 chr3L:21032785-21032905 0.00013 16_[+1]_96 chr2L:5008663-5008783 0.00013 56_[+1]_56 chr2R:22076735-22076855 0.00013 75_[+1]_37 chr2R:18126849-18126969 0.00015 101_[+1]_11 chr3R:17150971-17151091 0.00015 95_[+1]_17 chrX:2147113-2147233 0.00015 89_[+1]_23 chr3R:8672836-8672956 0.00017 34_[+1]_78 chr3R:11231140-11231260 0.00017 75_[+1]_37 chr3R:30279036-30279156 0.00017 11_[+1]_101 chr2L:18986238-18986358 0.00017 [+1]_112 chr2L:18690280-18690400 0.00019 100_[+1]_12 chr3R:12698473-12698593 0.00019 40_[+1]_72 chr3L:3227058-3227178 0.00019 72_[+1]_40 chr2L:11989349-11989469 0.00021 90_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCWGC width=8 seqs=42 chr3R:4399069-4399189 ( 85) GCTGCTGC 1 chrX:1877928-1878048 ( 103) GCTGCTGC 1 chr3R:8802380-8802500 ( 102) GCTGCTGC 1 chr2L:11119277-11119397 ( 24) GCTGCTGC 1 chr2L:22128988-22129108 ( 96) GCTGCTGC 1 chrX:11356813-11356933 ( 50) GCTGCTGC 1 chr3R:15358008-15358128 ( 113) GCTGCTGC 1 chrX:7937162-7937282 ( 113) GCTGCTGC 1 chrX:13829009-13829129 ( 8) GCTGCTGC 1 chr3L:20400654-20400774 ( 85) GCTGCTGC 1 chrX:20170516-20170636 ( 78) GCAGCTGC 1 chr2L:21164231-21164351 ( 111) GCAGCTGC 1 chr3L:16111210-16111330 ( 47) GCAGCTGC 1 chr2R:23367414-23367534 ( 67) GCAGCTGC 1 chrX:8710432-8710552 ( 30) GCAGCTGC 1 chr2L:13177689-13177809 ( 65) GCAGCTGC 1 chrX:21047856-21047976 ( 8) GCAGCTGC 1 chrX:628040-628160 ( 106) GCTGCTGT 1 chr3R:21098549-21098669 ( 112) GCTGCTGT 1 chr2R:10532633-10532753 ( 91) GCTGCTGT 1 chr3R:23197106-23197226 ( 7) GCAGCTGT 1 chrX:15463154-15463274 ( 66) GCAGCAGC 1 chr2R:18415335-18415455 ( 23) GCAGCAGC 1 chr2R:16788330-16788450 ( 100) GCAGCAGC 1 chr2R:22073805-22073925 ( 8) GCAGCAGC 1 chr2L:10206107-10206227 ( 101) GCAGCAGC 1 chr3R:24232053-24232173 ( 110) GCAGCAGC 1 chr3R:28810562-28810682 ( 1) GCTGCTGG 1 chr3L:21032785-21032905 ( 17) GCTGCTGG 1 chr2L:5008663-5008783 ( 57) GCTGCTGG 1 chr2R:22076735-22076855 ( 76) GCTGCTGG 1 chr2R:18126849-18126969 ( 102) GCAGCTGG 1 chr3R:17150971-17151091 ( 96) GCAGCTGG 1 chrX:2147113-2147233 ( 90) GCAGCTGG 1 chr3R:8672836-8672956 ( 35) GCTGCAGT 1 chr3R:11231140-11231260 ( 76) GCTGCAGT 1 chr3R:30279036-30279156 ( 12) GCTGCAGT 1 chr2L:18986238-18986358 ( 1) GCTGCAGT 1 chr2L:18690280-18690400 ( 101) GCAGCAGT 1 chr3R:12698473-12698593 ( 41) GCAGCAGT 1 chr3L:3227058-3227178 ( 73) GCAGCAGT 1 chr2L:11989349-11989469 ( 91) GCTGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 6.9e-004 -1204 -1204 190 -1204 -1204 190 -1204 -1204 103 -1204 -1204 118 -1204 -1204 190 -1204 -1204 190 -1204 -1204 52 -1204 -1204 152 -1204 -1204 190 -1204 -1204 104 -50 18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 6.9e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.476190 0.000000 0.000000 0.523810 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.547619 0.190476 0.261905 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[TA]GC[TA]G[CT] -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF TTMTTGAA MEME-2 width = 8 sites = 7 llr = 76 E-value = 5.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::6:::aa pos.-specific C ::4::::: probability G :::::a:: matrix T aa:aa::: bits 2.1 ** ** ** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTATTGAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:21066513-21066633 4 9.73e-06 TAA TTATTGAA ATGAGACAAC chrX:2081304-2081424 97 9.73e-06 GGTGGGTCGC TTATTGAA ATCGGCCTGT chrX:8710432-8710552 43 9.73e-06 GCTGCATATA TTATTGAA AAGAATTTGC chr2L:11989349-11989469 106 9.73e-06 AGGGCCCGCT TTATTGAA TCCGCCA chr3R:31744898-31745018 28 2.09e-05 AAGGGGAAAT TTCTTGAA ATTCGGTATG chr3L:19447977-19448097 46 2.09e-05 TCAGCCAGTA TTCTTGAA GGAGGCTGGC chr2R:17666841-17666961 17 2.09e-05 GCGCGAGCGA TTCTTGAA GCGTACTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:21066513-21066633 9.7e-06 3_[+2]_109 chrX:2081304-2081424 9.7e-06 96_[+2]_16 chrX:8710432-8710552 9.7e-06 42_[+2]_70 chr2L:11989349-11989469 9.7e-06 105_[+2]_7 chr3R:31744898-31745018 2.1e-05 27_[+2]_85 chr3L:19447977-19448097 2.1e-05 45_[+2]_67 chr2R:17666841-17666961 2.1e-05 16_[+2]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTMTTGAA width=8 seqs=7 chrX:21066513-21066633 ( 4) TTATTGAA 1 chrX:2081304-2081424 ( 97) TTATTGAA 1 chrX:8710432-8710552 ( 43) TTATTGAA 1 chr2L:11989349-11989469 ( 106) TTATTGAA 1 chr3R:31744898-31745018 ( 28) TTCTTGAA 1 chr3L:19447977-19448097 ( 46) TTCTTGAA 1 chr2R:17666841-17666961 ( 17) TTCTTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 5.4e+005 -945 -945 -945 211 -945 -945 -945 211 130 68 -945 -945 -945 -945 -945 211 -945 -945 -945 211 -945 -945 189 -945 210 -945 -945 -945 210 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.4e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.571429 0.428571 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTTGAA MEME-2 regular expression -------------------------------------------------------------------------------- TT[AC]TTGAA -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCACCA MEME-3 width = 8 sites = 10 llr = 103 E-value = 6.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3::a::a pos.-specific C ::aa:aa: probability G a7:::::: matrix T :::::::: bits 2.1 * * 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCACCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16939368-16939488 21 1.98e-05 CCAGATAGGC GGCCACCA GGCAGTGCCA chrX:21066513-21066633 113 1.98e-05 CCTGCAGCTT GGCCACCA chr3L:7359165-7359285 94 1.98e-05 CCTTCTCTGG GGCCACCA TCACTCCGGC chr3R:8350470-8350590 5 1.98e-05 CCCC GGCCACCA ATGACCTGAA chr3R:19645836-19645956 9 1.98e-05 AAGCCACA GGCCACCA CGGCGGCCAG chr3R:23752066-23752186 103 1.98e-05 CAGCATTGGG GGCCACCA CACGTTCATG chr2R:12345608-12345728 35 1.98e-05 TGGACGATGT GGCCACCA TGAAGAGCAT chr3R:26043459-26043579 57 3.69e-05 TCTAAATAGG GACCACCA CCTCAGGGTC chr2R:22073805-22073925 42 3.69e-05 CTCCCTTGAA GACCACCA GCTTGGATAG chr2R:20273450-20273570 70 3.69e-05 AATGATCAGA GACCACCA AGTATGCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16939368-16939488 2e-05 20_[+3]_92 chrX:21066513-21066633 2e-05 112_[+3] chr3L:7359165-7359285 2e-05 93_[+3]_19 chr3R:8350470-8350590 2e-05 4_[+3]_108 chr3R:19645836-19645956 2e-05 8_[+3]_104 chr3R:23752066-23752186 2e-05 102_[+3]_10 chr2R:12345608-12345728 2e-05 34_[+3]_78 chr3R:26043459-26043579 3.7e-05 56_[+3]_56 chr2R:22073805-22073925 3.7e-05 41_[+3]_71 chr2R:20273450-20273570 3.7e-05 69_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCACCA width=8 seqs=10 chrX:16939368-16939488 ( 21) GGCCACCA 1 chrX:21066513-21066633 ( 113) GGCCACCA 1 chr3L:7359165-7359285 ( 94) GGCCACCA 1 chr3R:8350470-8350590 ( 5) GGCCACCA 1 chr3R:19645836-19645956 ( 9) GGCCACCA 1 chr3R:23752066-23752186 ( 103) GGCCACCA 1 chr2R:12345608-12345728 ( 35) GGCCACCA 1 chr3R:26043459-26043579 ( 57) GACCACCA 1 chr2R:22073805-22073925 ( 42) GACCACCA 1 chr2R:20273450-20273570 ( 70) GACCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 6.4e+005 -997 -997 189 -997 37 -997 138 -997 -997 190 -997 -997 -997 190 -997 -997 210 -997 -997 -997 -997 190 -997 -997 -997 190 -997 -997 210 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.4e+005 0.000000 0.000000 1.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCACCA MEME-3 regular expression -------------------------------------------------------------------------------- G[GA]CCACCA -------------------------------------------------------------------------------- Time 19.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGGAGVA MEME-4 width = 8 sites = 20 llr = 185 E-value = 3.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6::a:4a pos.-specific C ::::::2: probability G a:aa:a4: matrix T :5:::::: bits 2.1 * * 1.9 * **** * 1.7 * **** * 1.5 * **** * Relative 1.3 * **** * Entropy 1.1 ****** * (13.4 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGGAGAA consensus T G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15463154-15463274 49 1.52e-05 CTGTCAGGAC GAGGAGAA GACGCTGGCG chr3R:5743338-5743458 100 1.52e-05 GAAGTCGCAG GAGGAGAA GATGCGGCAG chr2L:19431448-19431568 70 1.52e-05 GATGGGCATC GAGGAGAA GGGCCAGGTG chr2R:17847624-17847744 12 1.52e-05 CGCCGATCTG GAGGAGAA TGCCGATCCG chrX:6347845-6347965 44 4.79e-05 CGAGGAGGTC GAGGAGGA TGAAGAGCTC chr3R:23752066-23752186 20 4.79e-05 AGCAGCGGTG GAGGAGGA GGCAGCCTCC chrX:17861630-17861750 41 4.79e-05 GGACATTGAA GAGGAGGA GGTAGGAAGC chr3R:24232940-24233060 14 4.79e-05 ATCCGAATCG GAGGAGGA GTCCGTTTCA chr2R:16164721-16164841 82 4.79e-05 GGATGTGGAC GAGGAGGA TATGGCTGCA chr3R:12407189-12407309 33 4.79e-05 GGTCAACTCA GTGGAGAA CTTTGTCCAT chr3L:6214675-6214795 40 4.79e-05 GCAGTGTCCG GTGGAGAA GAAGTAGTCG chr2R:8239057-8239177 104 4.79e-05 CCTGGTGGAG GTGGAGAA CCTGACGCA chr2L:543938-544058 33 4.79e-05 AATGTCGTGC GTGGAGAA CTTGTAGTTA chr2L:1184697-1184817 29 6.55e-05 TGGCCCCCGG GTGGAGGA GGCCATGGAG chrX:9587059-9587179 96 6.55e-05 TATGGAGCGT GTGGAGGA GGCGGAGCTC chr2R:21623606-21623726 72 6.55e-05 TCCCGGCGTC GTGGAGGA CTCATCCTTA chr2L:11991391-11991511 65 8.30e-05 ATGAGTGCGA GAGGAGCA CCGGACAGGA chr3L:2170276-2170396 77 8.30e-05 TCGACGGTGT GAGGAGCA AGAGAGGCAT chr2R:18973702-18973822 11 1.00e-04 GCCTGTGCGA GTGGAGCA AGGTAACCAG chr3L:2588474-2588594 90 1.00e-04 CATGAACCCC GTGGAGCA TCCTCACGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15463154-15463274 1.5e-05 48_[+4]_64 chr3R:5743338-5743458 1.5e-05 99_[+4]_13 chr2L:19431448-19431568 1.5e-05 69_[+4]_43 chr2R:17847624-17847744 1.5e-05 11_[+4]_101 chrX:6347845-6347965 4.8e-05 43_[+4]_69 chr3R:23752066-23752186 4.8e-05 19_[+4]_93 chrX:17861630-17861750 4.8e-05 40_[+4]_72 chr3R:24232940-24233060 4.8e-05 13_[+4]_99 chr2R:16164721-16164841 4.8e-05 81_[+4]_31 chr3R:12407189-12407309 4.8e-05 32_[+4]_80 chr3L:6214675-6214795 4.8e-05 39_[+4]_73 chr2R:8239057-8239177 4.8e-05 103_[+4]_9 chr2L:543938-544058 4.8e-05 32_[+4]_80 chr2L:1184697-1184817 6.6e-05 28_[+4]_84 chrX:9587059-9587179 6.6e-05 95_[+4]_17 chr2R:21623606-21623726 6.6e-05 71_[+4]_41 chr2L:11991391-11991511 8.3e-05 64_[+4]_48 chr3L:2170276-2170396 8.3e-05 76_[+4]_36 chr2R:18973702-18973822 0.0001 10_[+4]_102 chr3L:2588474-2588594 0.0001 89_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGGAGVA width=8 seqs=20 chrX:15463154-15463274 ( 49) GAGGAGAA 1 chr3R:5743338-5743458 ( 100) GAGGAGAA 1 chr2L:19431448-19431568 ( 70) GAGGAGAA 1 chr2R:17847624-17847744 ( 12) GAGGAGAA 1 chrX:6347845-6347965 ( 44) GAGGAGGA 1 chr3R:23752066-23752186 ( 20) GAGGAGGA 1 chrX:17861630-17861750 ( 41) GAGGAGGA 1 chr3R:24232940-24233060 ( 14) GAGGAGGA 1 chr2R:16164721-16164841 ( 82) GAGGAGGA 1 chr3R:12407189-12407309 ( 33) GTGGAGAA 1 chr3L:6214675-6214795 ( 40) GTGGAGAA 1 chr2R:8239057-8239177 ( 104) GTGGAGAA 1 chr2L:543938-544058 ( 33) GTGGAGAA 1 chr2L:1184697-1184817 ( 29) GTGGAGGA 1 chrX:9587059-9587179 ( 96) GTGGAGGA 1 chr2R:21623606-21623726 ( 72) GTGGAGGA 1 chr2L:11991391-11991511 ( 65) GAGGAGCA 1 chr3L:2170276-2170396 ( 77) GAGGAGCA 1 chr2R:18973702-18973822 ( 11) GTGGAGCA 1 chr3L:2588474-2588594 ( 90) GTGGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 3.7e+004 -1097 -1097 190 -1097 124 -1097 -1097 96 -1097 -1097 190 -1097 -1097 -1097 190 -1097 210 -1097 -1097 -1097 -1097 -1097 190 -1097 78 -42 57 -1097 210 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.7e+004 0.000000 0.000000 1.000000 0.000000 0.550000 0.000000 0.000000 0.450000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.200000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGAGVA MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]GGAG[AGC]A -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCTGCTT MEME-5 width = 8 sites = 2 llr = 23 E-value = 4.0e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::a::a:: probability G ::::a::: matrix T :a:a::aa bits 2.1 ** * ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATCTGCTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2147113-2147233 9 1.29e-05 GGAATTCG ATCTGCTT TAATCGACTT chrX:8710432-8710552 76 1.29e-05 ATAAAGTGAA ATCTGCTT TATGTATCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2147113-2147233 1.3e-05 8_[+5]_104 chrX:8710432-8710552 1.3e-05 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCTGCTT width=8 seqs=2 chrX:2147113-2147233 ( 9) ATCTGCTT 1 chrX:8710432-8710552 ( 76) ATCTGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 4.0e+006 210 -765 -765 -765 -765 -765 -765 210 -765 190 -765 -765 -765 -765 -765 210 -765 -765 189 -765 -765 190 -765 -765 -765 -765 -765 210 -765 -765 -765 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.0e+006 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTGCTT MEME-5 regular expression -------------------------------------------------------------------------------- ATCTGCTT -------------------------------------------------------------------------------- Time 32.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:21047856-21047976 1.15e-01 7_[+1(3.99e-05)]_105 chr3R:23056252-23056372 4.34e-02 120 chrX:9586766-9586886 7.12e-01 120 chr2R:20273450-20273570 9.35e-02 69_[+3(3.69e-05)]_43 chrX:5714925-5715045 8.87e-01 120 chr2R:6758223-6758343 2.29e-01 120 chr3L:20400654-20400774 1.84e-01 84_[+1(1.99e-05)]_28 chr2L:20788189-20788309 7.18e-01 120 chr2L:543938-544058 3.40e-03 32_[+4(4.79e-05)]_80 chr3R:29221307-29221427 4.74e-01 120 chr2L:6369425-6369545 2.61e-01 120 chr2R:20275296-20275416 3.11e-02 120 chr3L:27093976-27094096 5.64e-01 120 chrX:6869333-6869453 3.42e-01 120 chr3L:8345321-8345441 2.91e-02 120 chrX:17146668-17146788 7.68e-01 120 chr3L:3162723-3162843 3.39e-01 120 chrX:5902843-5902963 6.47e-01 120 chr3L:1667562-1667682 5.54e-01 120 chr2L:11989349-11989469 2.98e-03 105_[+2(9.73e-06)]_7 chr3R:4437956-4438076 5.47e-01 120 chr2R:8238495-8238615 9.54e-01 120 chr2R:17847624-17847744 1.66e-02 11_[+4(1.52e-05)]_101 chr3R:9007397-9007517 6.53e-01 120 chr2L:6970952-6971072 1.50e-01 120 chr3R:18252015-18252135 2.83e-01 120 chr3R:5482929-5483049 7.04e-01 120 chr2L:18986238-18986358 2.55e-01 120 chr2R:22076735-22076855 2.93e-02 120 chr3L:8677912-8678032 1.02e-01 120 chr2L:13397532-13397652 5.12e-01 120 chrX:13829009-13829129 2.44e-02 7_[+1(1.99e-05)]_105 chr2L:18687966-18688086 4.46e-01 120 chr3R:24232053-24232173 4.95e-02 120 chrX:1477632-1477752 4.17e-01 120 chr3L:4121353-4121473 9.49e-01 120 chr2R:17666841-17666961 2.42e-02 16_[+2(2.09e-05)]_96 chr3R:15997032-15997152 9.97e-01 120 chr3R:15995101-15995221 7.33e-01 120 chrX:18847243-18847363 8.73e-01 120 chr2R:21623606-21623726 2.22e-02 71_[+4(6.55e-05)]_41 chr3L:12525686-12525806 1.25e-01 10_[+2(6.84e-05)]_102 chr2L:10206107-10206227 9.67e-02 120 chrX:9587059-9587179 1.38e-01 95_[+4(6.55e-05)]_17 chr2R:8239057-8239177 1.31e-01 103_[+4(4.79e-05)]_9 chrX:7937162-7937282 6.40e-02 112_[+1(1.99e-05)] chr2L:1184697-1184817 9.52e-02 28_[+4(6.55e-05)]_84 chr3L:3378714-3378834 2.52e-01 120 chr3R:4820343-4820463 7.40e-01 120 chr3L:3379034-3379154 8.66e-01 120 chr2R:17847889-17848009 3.61e-01 120 chr3R:23197106-23197226 9.50e-02 6_[+1(9.45e-05)]_106 chr3L:8601867-8601987 5.40e-02 120 chr3L:6214675-6214795 2.26e-01 39_[+4(4.79e-05)]_73 chrX:15836595-15836715 8.08e-01 120 chr3R:22380651-22380771 6.91e-01 120 chr2L:12821160-12821280 4.20e-01 120 chrX:6688144-6688264 5.51e-01 120 chr3R:12407189-12407309 1.54e-01 32_[+4(4.79e-05)]_80 chrX:764208-764328 2.04e-01 120 chrX:20393237-20393357 8.93e-01 120 chr2L:17411135-17411255 7.70e-01 120 chr2L:13177689-13177809 4.98e-03 64_[+1(3.99e-05)]_48 chr3R:4333261-4333381 2.89e-01 120 chr2R:6022509-6022629 6.34e-01 120 chrX:8710432-8710552 2.24e-05 29_[+1(3.99e-05)]_5_[+2(9.73e-06)]_\ 25_[+5(1.29e-05)]_37 chrX:15868768-15868888 1.54e-01 120 chrX:2081304-2081424 1.34e-03 27_[+4(4.79e-05)]_7_[+4(4.79e-05)]_\ 46_[+2(9.73e-06)]_16 chrX:11874251-11874371 8.28e-01 120 chr2R:12345608-12345728 1.10e-02 34_[+3(1.98e-05)]_78 chr2R:16164721-16164841 1.05e-01 81_[+4(4.79e-05)]_31 chr2L:8673627-8673747 2.51e-01 120 chr3R:29862929-29863049 9.72e-02 120 chr2L:15008565-15008685 3.37e-01 120 chr2L:1150039-1150159 3.97e-01 120 chr3R:4397265-4397385 6.57e-01 120 chrX:1052229-1052349 3.77e-01 120 chr2R:13806264-13806384 6.19e-01 120 chr2L:16739559-16739679 8.73e-01 120 chrX:6655732-6655852 4.43e-01 120 chrX:16802501-16802621 8.36e-01 120 chrX:9154809-9154929 2.13e-01 120 chrX:4912846-4912966 1.59e-01 120 chr3R:22685683-22685803 7.43e-01 120 chrX:15747539-15747659 3.09e-01 120 chr3R:21072704-21072824 3.06e-01 120 chr2L:551066-551186 7.58e-01 120 chrX:645341-645461 6.95e-01 120 chr3L:2588474-2588594 6.23e-02 120 chr3R:24232940-24233060 3.44e-02 13_[+4(4.79e-05)]_99 chr3R:15995982-15996102 6.95e-01 120 chrX:19601161-19601281 7.50e-01 120 chrX:21318647-21318767 1.91e-01 120 chr3L:3050685-3050805 7.79e-01 120 chr3L:2265041-2265161 6.38e-01 120 chr2R:17534663-17534783 6.02e-01 120 chr3R:30279036-30279156 1.59e-02 120 chr2R:13857810-13857930 2.23e-01 120 chrX:9083441-9083561 1.53e-02 120 chrX:21387163-21387283 7.05e-02 120 chr3L:2170276-2170396 6.62e-02 76_[+4(8.30e-05)]_36 chrX:17861630-17861750 1.23e-01 40_[+4(4.79e-05)]_72 chr3R:24232653-24232773 2.28e-01 120 chr3L:19447977-19448097 5.94e-02 45_[+2(2.09e-05)]_67 chrX:2147113-2147233 5.96e-03 8_[+5(1.29e-05)]_104 chr3R:8817192-8817312 2.72e-01 120 chr2L:568912-569032 6.17e-01 120 chrX:15763714-15763834 3.95e-01 120 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chr2R:10818634-10818754 5.76e-01 120 chr3R:6457789-6457909 2.32e-01 120 chrX:16788383-16788503 4.70e-01 120 chrX:628040-628160 6.42e-03 105_[+1(5.72e-05)]_7 chr3R:29805816-29805936 5.49e-01 120 chrX:6347845-6347965 7.46e-02 43_[+4(4.79e-05)]_69 chr2R:18136257-18136377 4.05e-01 120 chr3L:20301395-20301515 1.89e-01 120 chr3R:5743338-5743458 3.45e-02 99_[+4(1.52e-05)]_13 chr2L:18690280-18690400 1.38e-01 120 chr3R:12444582-12444702 8.91e-01 120 chr2R:16788330-16788450 3.55e-02 6_[+3(7.36e-05)]_106 chr3L:7359165-7359285 1.14e-01 93_[+3(1.98e-05)]_19 chr3L:1533385-1533505 2.21e-01 120 chr2L:1179858-1179978 9.30e-01 120 chr2L:10857294-10857414 5.64e-01 120 chr2R:14215954-14216074 3.36e-01 120 chr2L:12428879-12428999 9.09e-01 120 chrX:20170516-20170636 1.91e-01 77_[+1(3.99e-05)]_35 chr2R:18415335-18415455 6.19e-02 120 chr2R:11900338-11900458 7.64e-01 120 chrX:21066513-21066633 6.52e-05 3_[+2(9.73e-06)]_101_[+3(1.98e-05)] chrX:5617783-5617903 5.44e-01 120 chrX:19749623-19749743 6.92e-01 120 chr3L:20431446-20431566 9.81e-01 120 chr2R:12594057-12594177 1.44e-01 120 chr2L:19492000-19492120 1.21e-01 47_[+2(4.19e-05)]_65 chr2R:7813193-7813313 8.18e-01 120 chrX:1877928-1878048 1.89e-01 102_[+1(1.99e-05)]_10 chrX:16939368-16939488 6.70e-02 20_[+3(1.98e-05)]_37_[+3(7.36e-05)]_\ 47 chr3L:1946931-1947051 2.69e-01 120 chr3R:31744898-31745018 1.34e-01 27_[+2(2.09e-05)]_85 chr3R:27113177-27113297 5.56e-01 120 chr3R:28810562-28810682 1.37e-02 120 chr2R:6877997-6878117 8.86e-02 120 chr2L:133035-133155 6.47e-01 120 chr2R:22853269-22853389 5.21e-01 120 chr2R:21687001-21687121 1.75e-01 120 chr3R:4399069-4399189 7.15e-02 84_[+1(1.99e-05)]_28 chrX:15463154-15463274 6.55e-03 48_[+4(1.52e-05)]_64 chr2L:6917885-6918005 4.51e-02 87_[+3(7.36e-05)]_25 chr2L:9892002-9892122 5.84e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************