******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/trem.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:15062737-15062857 1.0000 120 chr3R:15786630-15786750 1.0000 120 chr2L:6130671-6130791 1.0000 120 chr3R:11230534-11230654 1.0000 120 chr2R:23877634-23877754 1.0000 120 chrX:1900603-1900723 1.0000 120 chr3R:4833733-4833853 1.0000 120 chr2L:16327002-16327122 1.0000 120 chr2L:14408512-14408632 1.0000 120 chr2R:14427125-14427245 1.0000 120 chr3R:5821358-5821478 1.0000 120 chr2R:12692664-12692784 1.0000 120 chr3R:11957521-11957641 1.0000 120 chr2R:8627850-8627970 1.0000 120 chr3R:11231849-11231969 1.0000 120 chr3L:11765859-11765979 1.0000 120 chr2R:17748001-17748121 1.0000 120 chr3L:5133843-5133963 1.0000 120 chr2L:6547211-6547331 1.0000 120 chr2R:23851490-23851610 1.0000 120 chr3L:14408856-14408976 1.0000 120 chr3L:6958299-6958419 1.0000 120 chrX:2726559-2726679 1.0000 120 chr2R:11303406-11303526 1.0000 120 chr3R:28870465-28870585 1.0000 120 chrX:9149090-9149210 1.0000 120 chr2L:16738375-16738495 1.0000 120 chr2R:12515062-12515182 1.0000 120 chr3R:17684992-17685112 1.0000 120 chr2R:8625334-8625454 1.0000 120 chr2L:6036862-6036982 1.0000 120 chr3R:30177684-30177804 1.0000 120 chr3R:29592215-29592335 1.0000 120 chr3L:8966707-8966827 1.0000 120 chr2L:15256327-15256447 1.0000 120 chr3L:13046873-13046993 1.0000 120 chr3L:6958097-6958217 1.0000 120 chr2R:20262924-20263044 1.0000 120 chr3R:17687064-17687184 1.0000 120 chr3R:5563620-5563740 1.0000 120 chrX:17852651-17852771 1.0000 120 chr3R:10076785-10076905 1.0000 120 chr3L:20491660-20491780 1.0000 120 chr3R:9412378-9412498 1.0000 120 chr2R:10821597-10821717 1.0000 120 chr3R:14901552-14901672 1.0000 120 chr3R:29592415-29592535 1.0000 120 chrX:5771050-5771170 1.0000 120 chrX:8102060-8102180 1.0000 120 chr3L:1318340-1318460 1.0000 120 chr3R:29723041-29723161 1.0000 120 chr3R:30180165-30180285 1.0000 120 chr3L:6850795-6850915 1.0000 120 chr3R:27938413-27938533 1.0000 120 chr2L:1006582-1006702 1.0000 120 chr2R:9145140-9145260 1.0000 120 chr4:835916-836036 1.0000 120 chr2R:10807007-10807127 1.0000 120 chr3L:19193488-19193608 1.0000 120 chr2L:18689609-18689729 1.0000 120 chr2R:14757848-14757968 1.0000 120 chr3L:20769495-20769615 1.0000 120 chr3R:25065655-25065775 1.0000 120 chr3L:16673535-16673655 1.0000 120 chr2R:20263126-20263246 1.0000 120 chr3L:18667269-18667389 1.0000 120 chr3L:14400015-14400135 1.0000 120 chr2R:21986943-21987063 1.0000 120 chr3R:7913270-7913390 1.0000 120 chr3R:25893377-25893497 1.0000 120 chr3R:7155149-7155269 1.0000 120 chr2R:23396680-23396800 1.0000 120 chr3L:19803366-19803486 1.0000 120 chr3L:6495254-6495374 1.0000 120 chr3R:28811343-28811463 1.0000 120 chr3R:17687264-17687384 1.0000 120 chr3R:10133042-10133162 1.0000 120 chr2R:17407322-17407442 1.0000 120 chr2R:11297512-11297632 1.0000 120 chr2L:16879375-16879495 1.0000 120 chr2R:9810783-9810903 1.0000 120 chr2R:13861879-13861999 1.0000 120 chrX:10785179-10785299 1.0000 120 chr3L:20497181-20497301 1.0000 120 chr2L:19915350-19915470 1.0000 120 chr2L:2357359-2357479 1.0000 120 chr2R:22415667-22415787 1.0000 120 chr2R:8614569-8614689 1.0000 120 chr3R:15485979-15486099 1.0000 120 chr2R:9291669-9291789 1.0000 120 chr2R:17349693-17349813 1.0000 120 chr2R:21634514-21634634 1.0000 120 chr3R:25624649-25624769 1.0000 120 chr3R:17647567-17647687 1.0000 120 chr2L:357902-358022 1.0000 120 chr3R:14820042-14820162 1.0000 120 chr2R:7463122-7463242 1.0000 120 chr3R:7246955-7247075 1.0000 120 chrX:4117454-4117574 1.0000 120 chr3R:17085260-17085380 1.0000 120 chrX:10786233-10786353 1.0000 120 chr3L:20361606-20361726 1.0000 120 chr3R:16996076-16996196 1.0000 120 chr2R:11784857-11784977 1.0000 120 chr3R:18252760-18252880 1.0000 120 chr2L:2575034-2575154 1.0000 120 chr3R:27274650-27274770 1.0000 120 chr2L:3030427-3030547 1.0000 120 chr2R:20643895-20644015 1.0000 120 chr3R:20762647-20762767 1.0000 120 chr2R:10806801-10806921 1.0000 120 chrX:6225518-6225638 1.0000 120 chr3R:25056159-25056279 1.0000 120 chr3R:25626898-25627018 1.0000 120 chr3L:8956732-8956852 1.0000 120 chr2L:6127611-6127731 1.0000 120 chr2R:19283951-19284071 1.0000 120 chr3L:16351893-16352013 1.0000 120 chr2L:3023120-3023240 1.0000 120 chrX:2585442-2585562 1.0000 120 chr2R:11405807-11405927 1.0000 120 chr3R:8316480-8316600 1.0000 120 chr2L:4444678-4444798 1.0000 120 chr3L:692907-693027 1.0000 120 chr2R:13485420-13485540 1.0000 120 chrX:625246-625366 1.0000 120 chr3L:11822203-11822323 1.0000 120 chr3R:5733363-5733483 1.0000 120 chrX:14201282-14201402 1.0000 120 chr3L:11825697-11825817 1.0000 120 chr2R:19395985-19396105 1.0000 120 chrX:16746917-16747037 1.0000 120 chr2L:2580126-2580246 1.0000 120 chr3L:21441368-21441488 1.0000 120 chr2L:7310075-7310195 1.0000 120 chr2R:14756318-14756438 1.0000 120 chr3R:31405075-31405195 1.0000 120 chr2L:6547410-6547530 1.0000 120 chr2R:18426310-18426430 1.0000 120 chr2R:13506285-13506405 1.0000 120 chr2R:21687641-21687761 1.0000 120 chr2L:21221188-21221308 1.0000 120 chr2R:23357380-23357500 1.0000 120 chr3R:11312401-11312521 1.0000 120 chr2R:11619002-11619122 1.0000 120 chr2L:8415251-8415371 1.0000 120 chr3R:11957720-11957840 1.0000 120 chr2R:12686141-12686261 1.0000 120 chr2L:19498100-19498220 1.0000 120 chr3L:6994615-6994735 1.0000 120 chrX:18653069-18653189 1.0000 120 chr2L:16507780-16507900 1.0000 120 chr2R:8631921-8632041 1.0000 120 chr2L:6024522-6024642 1.0000 120 chr2L:6448458-6448578 1.0000 120 chr2L:3514706-3514826 1.0000 120 chr3R:18226058-18226178 1.0000 120 chr3R:5564783-5564903 1.0000 120 chr3L:3143469-3143589 1.0000 120 chr4:68991-69111 1.0000 120 chr2L:294715-294835 1.0000 120 chr3R:16996279-16996399 1.0000 120 chrX:12592188-12592308 1.0000 120 chr2R:13206687-13206807 1.0000 120 chr2R:16850308-16850428 1.0000 120 chr2R:16955309-16955429 1.0000 120 chr3R:26863136-26863256 1.0000 120 chr2R:9251960-9252080 1.0000 120 chr3R:9725686-9725806 1.0000 120 chr3R:28811554-28811674 1.0000 120 chr3R:23159474-23159594 1.0000 120 chr3R:7131063-7131183 1.0000 120 chrX:17856573-17856693 1.0000 120 chr2L:4818189-4818309 1.0000 120 chr3L:5134122-5134242 1.0000 120 chr3R:6380294-6380414 1.0000 120 chr2L:2045412-2045532 1.0000 120 chr3L:19845140-19845260 1.0000 120 chrX:13722033-13722153 1.0000 120 chr2R:14503823-14503943 1.0000 120 chr2L:12063169-12063289 1.0000 120 chr3R:13088510-13088630 1.0000 120 chr3R:20028009-20028129 1.0000 120 chr3R:18283556-18283676 1.0000 120 chr2R:9891635-9891755 1.0000 120 chrX:17636090-17636210 1.0000 120 chr2R:14235485-14235605 1.0000 120 chr2L:19580340-19580460 1.0000 120 chr2R:12569807-12569927 1.0000 120 chr3L:16348020-16348140 1.0000 120 chr3L:174669-174789 1.0000 120 chr2R:9143918-9144038 1.0000 120 chr2R:16291444-16291564 1.0000 120 chr2R:24068426-24068546 1.0000 120 chr3R:14298067-14298187 1.0000 120 chr2L:10743895-10744015 1.0000 120 chr3R:23053294-23053414 1.0000 120 chr3R:29116295-29116415 1.0000 120 chr4:68773-68893 1.0000 120 chr2L:10056809-10056929 1.0000 120 chr3R:9008353-9008473 1.0000 120 chrX:1375409-1375529 1.0000 120 chr3L:14942870-14942990 1.0000 120 chr2R:23809047-23809167 1.0000 120 chr2R:14871135-14871255 1.0000 120 chr3R:12431187-12431307 1.0000 120 chr3L:3143686-3143806 1.0000 120 chrX:20251127-20251247 1.0000 120 chr3R:16453831-16453951 1.0000 120 chr3R:20824196-20824316 1.0000 120 chr2L:404024-404144 1.0000 120 chr3L:15116586-15116706 1.0000 120 chr2L:11989844-11989964 1.0000 120 chr3R:23061367-23061487 1.0000 120 chr3L:16139249-16139369 1.0000 120 chr2L:12712453-12712573 1.0000 120 chrX:17143211-17143331 1.0000 120 chr2R:16047421-16047541 1.0000 120 chr2L:6723683-6723803 1.0000 120 chr3L:19642785-19642905 1.0000 120 chrX:6661562-6661682 1.0000 120 chr2R:9820207-9820327 1.0000 120 chr3R:10133243-10133363 1.0000 120 chr2R:17412625-17412745 1.0000 120 chrX:10463195-10463315 1.0000 120 chr2L:3029154-3029274 1.0000 120 chr3L:1964276-1964396 1.0000 120 chr2R:9114083-9114203 1.0000 120 chr2L:2145212-2145332 1.0000 120 chr3L:835568-835688 1.0000 120 chrX:9256052-9256172 1.0000 120 chr3R:31571897-31572017 1.0000 120 chrX:17652573-17652693 1.0000 120 chr3L:21626141-21626261 1.0000 120 chr3L:1329793-1329913 1.0000 120 chr3R:22375772-22375892 1.0000 120 chr2R:7463330-7463450 1.0000 120 chr3R:30946515-30946635 1.0000 120 chr2R:14432379-14432499 1.0000 120 chr3R:10885434-10885554 1.0000 120 chr3R:10407259-10407379 1.0000 120 chr3L:17465833-17465953 1.0000 120 chr3L:4262469-4262589 1.0000 120 chr3R:9740768-9740888 1.0000 120 chr2R:17865980-17866100 1.0000 120 chr3R:18226271-18226391 1.0000 120 chr3L:18872630-18872750 1.0000 120 chr3L:20495270-20495390 1.0000 120 chr3R:24527925-24528045 1.0000 120 chr3R:8824252-8824372 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_trem/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/trem.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.316 C 0.189 G 0.192 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.316 C 0.189 G 0.192 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYTGSCAR MEME-1 width = 8 sites = 144 llr = 1165 E-value = 4.3e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::::a3 pos.-specific C :4::4a:1 probability G 81:a5::5 matrix T 15a::::1 bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** Relative 1.4 * ** ** Entropy 1.2 * ***** (11.7 bits) 1.0 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTTGGCAG consensus C C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17748001-17748121 84 4.66e-06 TCAAATGATA GCTGGCAG CTCCACTGGC chr2R:23357380-23357500 58 9.25e-06 AATGCGCAGA GCTGCCAG ATATTCTCGT chr2R:17407322-17407442 106 9.25e-06 CTATAACTGA GCTGCCAG ATCGCAT chr2L:404024-404144 26 1.68e-05 CTTGCATTCG GTTGGCAG CCCAGTTATT chr2R:14503823-14503943 81 1.68e-05 TCAATCGATA GTTGGCAG CCCTGGTGCG chr2R:9251960-9252080 45 1.68e-05 ATTGCGCGCA GTTGGCAG CCCTTCGCAA chr2R:16850308-16850428 44 1.68e-05 CATAAAACGA GTTGGCAG GGATGTATCG chr3R:11312401-11312521 52 1.68e-05 TTCGGACTGA GTTGGCAG GACCTGTCGG chr2L:7310075-7310195 52 1.68e-05 ATGAGCACAA GTTGGCAG CACCACTGGA chr3L:11822203-11822323 87 1.68e-05 ATAAAAACCA GTTGGCAG CCCACAAAGC chr3L:16351893-16352013 54 1.68e-05 GTTTGGAAAA GTTGGCAG CCCTCCTTGA chr2R:10806801-10806921 51 1.68e-05 TCTATGGCAA GTTGGCAG TCTCTTTTGG chr2L:3030427-3030547 61 1.68e-05 CATAAAACAA GTTGGCAG CCCACTTTAC chrX:10786233-10786353 87 1.68e-05 TATTGCATAA GTTGGCAG TTCCAGCGTG chr3R:14820042-14820162 67 1.68e-05 gctgCATCGA GTTGGCAG CTCGCATTGG chr2L:357902-358022 78 1.68e-05 GTTCACCCAG GTTGGCAG CCCTTGGCGC chr2R:9291669-9291789 100 1.68e-05 CAAAAGCTAA GTTGGCAG CCCAGTTTAG chr2R:8614569-8614689 60 1.68e-05 CCAGCAGCAA GTTGGCAG TCCGATAGTT chrX:10785179-10785299 70 1.68e-05 TAAAGATAGG GTTGGCAG CACTGCTAGC chr3R:10133042-10133162 64 1.68e-05 TTACAAAAAA GTTGGCAG TTCCCACACA chr3R:25893377-25893497 70 1.68e-05 ATTTTGACAA GTTGGCAG GTTGGCTTTG chr3L:18667269-18667389 76 1.68e-05 ATGGAAGTAA GTTGGCAG CTTTGCGCAT chr2L:18689609-18689729 59 1.68e-05 GAGCTGTTCA GTTGGCAG CCCCCTGTGA chr3L:19193488-19193608 62 1.68e-05 ATTTCATTAA GTTGGCAG CTCTGTTTGC chr4:835916-836036 75 1.68e-05 TAGAAAGCAG GTTGGCAG CGCATATAAA chr3L:6850795-6850915 57 1.68e-05 TTTCGGTCAG GTTGGCAG CCCCTCTGCT chr3R:30180165-30180285 70 1.68e-05 TTTGAAGGAG GTTGGCAG CACCTTTCGA chr3R:29723041-29723161 62 1.68e-05 GTCAAAACAA GTTGGCAG TTTTTACAGC chr3L:1318340-1318460 77 1.68e-05 AACGAGCCGC GTTGGCAG CACCGTTGGC chr3L:13046873-13046993 78 1.68e-05 GATGCAATAG GTTGGCAG TCCGCTTAAA chr3R:17684992-17685112 87 1.68e-05 ACACAATCAA GTTGGCAG CCCTGCGACA chr2R:12515062-12515182 45 1.68e-05 AGTTAGTTCA GTTGGCAG GTTCATTTGA chr2R:11303406-11303526 53 1.68e-05 AATGCACCAA GTTGGCAG TACCAACATG chrX:2726559-2726679 39 1.68e-05 CGCAGCAGGA GTTGGCAG GTCCAGGAGC chr3R:11231849-11231969 50 1.68e-05 GCTGCAACGA GTTGGCAG CCCCGCAACA chr2R:8627850-8627970 71 1.68e-05 ATTAAATTGA GTTGGCAG TCTTATGCTA chr2R:14427125-14427245 27 1.68e-05 AAGAAAACAA GTTGGCAG CCCCAATTTA chr2L:16327002-16327122 71 1.68e-05 CAAAAATTAA GTTGGCAG CACTTACCGG chr3R:4833733-4833853 66 1.68e-05 AATGAGCTGA GTTGGCAG CACTGATTGT chr2R:23877634-23877754 86 1.68e-05 ATAAGCGTGA GTTGGCAG CCCAGATGCC chr3R:15786630-15786750 37 1.68e-05 AGTGCAGCGA GTTGGCAG GTTGGCGTGT chr3L:16139249-16139369 64 2.41e-05 ATCGCCCGTT GTTGCCAG ACTGCAATTG chr2R:24068426-24068546 32 2.41e-05 TTATCCCAGT GTTGCCAG ATGGCTATCC chr2L:2045412-2045532 70 2.41e-05 CTGTGGCAGC GTTGCCAG ATGCTGTCAT chr2L:6448458-6448578 66 2.41e-05 TAGCGGGGGC GTTGCCAG ACCTTCTCAA chr2L:16507780-16507900 3 2.41e-05 GC GTTGCCAG ATCAGCTTCT chr3R:18252760-18252880 8 2.41e-05 TCAGCAA GTTGCCAG ATGTGACGGC chr3R:7155149-7155269 41 2.41e-05 CAAGCCTGGC GTTGCCAG ATCAGAGTTA chr2L:3029154-3029274 74 3.18e-05 CCTAAATCAA GCTGGCAA CGCAAAGGAC chr3R:18283556-18283676 100 3.18e-05 GATAGAAACG GCTGGCAA TCGATTGGGA chr2R:17412625-17412745 63 3.94e-05 TTGATGCAGA GCTGCCAA CCCATGTTTA chr2R:9820207-9820327 103 3.94e-05 CATATACGGT GCTGCCAA CTTTTGTCAA chrX:12592188-12592308 31 3.94e-05 CTATCGTCTA GCTGCCAA TCAACTTAAA chr2L:19498100-19498220 26 3.94e-05 TGACAGCTGC GCTGCCAA GAAATCGATG chr2R:14756318-14756438 10 3.94e-05 AAGCTTAGG GCTGCCAA CTGTAATTGA chr3R:25626898-25627018 46 3.94e-05 GCTCTTAGGA GCTGCCAA CTGGCAGTCG chr2R:11784857-11784977 56 3.94e-05 CCAACGAGGA GCTGCCAA CTCGTTCCAC chr3R:16996076-16996196 27 3.94e-05 CTAGCGTGGC GCTGCCAA CCTGCTTTTT chrX:4117454-4117574 76 3.94e-05 CAGCCGCAGG GCTGCCAA CTCGATGGGC chr2L:2357359-2357479 3 3.94e-05 GG GCTGCCAA CTCGTTTGCT chr2R:13861879-13861999 47 3.94e-05 TCGCTACATT GCTGCCAA CTTGAATTTT chr3R:7913270-7913390 33 3.94e-05 TTGCCTTCGG GCTGCCAA CCTGTTTCAG chrX:8102060-8102180 69 3.94e-05 ATATATGTGG GCTGCCAA CTTGGCGCTA chr3R:14901552-14901672 70 3.94e-05 GCGCCGAGGG GCTGCCAA CTTTGGGGCC chr2R:10821597-10821717 58 3.94e-05 TGGACACGGA GCTGCCAA CTCGCTTCAT chr3R:17687064-17687184 41 3.94e-05 TAGAAATTGG GCTGCCAA CTTGCTGTGA chr3L:6958097-6958217 15 3.94e-05 TCGTAACGGG GCTGCCAA CTTGGGTATA chr3L:8966707-8966827 64 3.94e-05 TACTTATGGT GCTGCCAA CCCAATCGAA chr3R:29592215-29592335 82 3.94e-05 TGAAATCGGT GCTGCCAA CTTGCTGGCC chr2L:6036862-6036982 56 3.94e-05 ATGCAGCAGT GCTGCCAA CTCACGCAAT chr3R:28870465-28870585 47 3.94e-05 TTTAGCCAGA GCTGCCAA CTTGGGCCAC chr3R:5821358-5821478 54 3.94e-05 CATCACGAGT GCTGCCAA CTCGTTTTGG chr2L:14408512-14408632 62 3.94e-05 TGTGGCGTGT GCTGCCAA CTCGTGTGAA chrX:1900603-1900723 53 3.94e-05 ATCGCAGGTG GCTGCCAA CTTGCTTCAA chr2L:6130671-6130791 29 3.94e-05 CAGGGAGGGT GCTGCCAA CTCATGCGGA chr2R:14871135-14871255 35 6.39e-05 ATTAAACCGC GTTGCCAA CCACTAGAAA chrX:17856573-17856693 69 6.39e-05 AATGCACAGA GTTGCCAA TCGACCGCGG chr3L:6994615-6994735 15 6.39e-05 AATTTCCGCA GTTGCCAA CCCTGATATT chr2R:7463122-7463242 1 7.12e-05 . GCTGGCAT CTGGCAACGC chr4:68773-68893 48 7.85e-05 CATATCGGGA GCTGCCAT ACGATTTATG chr3R:23159474-23159594 23 7.85e-05 ATGGTGCAAG GCTGCCAT TCGTTTATCC chr3R:8316480-8316600 45 7.85e-05 ATGTCAAAGG GCTGCCAT CCGGGTAAAG chr3R:25056159-25056279 29 7.85e-05 GGACTGCAGG GCTGCCAT TCGTAAGTTA chr2L:1006582-1006702 84 7.85e-05 CATGTTAGGA GCTGCCAT CCTGATGTCT chr3R:10885434-10885554 52 8.78e-05 CCAGGCGCCC GGTGGCAG CACCGCGCAA chrX:10463195-10463315 9 8.78e-05 GCGGCCGA GGTGGCAG CGCTGGCTGC chr3R:9008353-9008473 104 8.78e-05 TTCCTCACAG GGTGGCAG CTCCGTCAA chr3R:17647567-17647687 43 8.78e-05 TTTGAAACGA GGTGGCAG CGCCGAAACC chr2L:19915350-19915470 78 8.78e-05 TACAAATCAG GGTGGCAG CGCGTGATAT chr3R:11230534-11230654 23 8.78e-05 AATTTCAGCA GCTGGCAC GCGGGCCTGC chr2R:14432379-14432499 14 1.09e-04 GTGCCTGCGG GCTGCCAC ATCTGGCAAA chrX:9256052-9256172 81 1.09e-04 CGTACCGATA GTTGGCAT TCGATGGTTG chr3L:835568-835688 70 1.09e-04 TCATGACAGA GCTGCCAC ACCTCGCGCA chr2R:12569807-12569927 64 1.09e-04 ACATGGTAAA GCTGCCAC CATGTTTCAG chr2R:17349693-17349813 66 1.09e-04 CGAAAAACGA GTTGGCAT GTCCCTGCTA chr3L:14400015-14400135 77 1.09e-04 AATCTGCCAA GTTGGCAT CTCTGTCATG chr2R:9145140-9145260 58 1.09e-04 TTCGCCGCAA GTTGGCAT CCCTAGCACT chr3R:27938413-27938533 84 1.09e-04 AAACTGAGAA GTTGGCAT AGCTACCGCT chr2L:6547211-6547331 19 1.09e-04 CCGAAAACAA GTTGGCAT TTTTGTGATT chr2R:12692664-12692784 71 1.09e-04 ACAACTGTGT GCTGCCAC TTCTTTTTTA chr3L:692907-693027 59 1.21e-04 TCGAGTCAGC GTTGCCAT ACTCATGTAA chr3R:5564783-5564903 54 1.36e-04 TATGCGCCGA GTTGGCAC TACCGTCGAT chr2R:13206687-13206807 21 1.50e-04 CACTATCAGG GTTGCCAC ATTTTCAGCC chr2R:12686141-12686261 20 1.50e-04 CGGCGTTGGA GTTGCCAC CTAGCACAAT chr3R:29592415-29592535 112 1.53e-04 AAAAGCGTGG GCGGGCAG C chr3L:20495270-20495390 31 1.64e-04 TTTTCTTCAG TCTGGCAG CTTTGTTTGA chr2L:10743895-10744015 46 1.64e-04 ACAGTAAATA TCTGGCAG CACTGTCTTA chr2R:19283951-19284071 52 1.64e-04 ACTTTAAAGG TCTGGCAG CACCAACCGG chrX:6225518-6225638 13 1.64e-04 ATGCGCACAG TCTGGCAG CCCCATATTA chr2L:2575034-2575154 44 1.64e-04 TGAACAAAAG TCTGGCAG CGCTGCATAT chr2R:23396680-23396800 60 1.64e-04 TTTGCGACCG TCTGGCAG CCTTGGCAAA chr2L:6024522-6024642 71 1.83e-04 TGTAAAATAC ATTGGCAG CACTGTCAAA chr3L:20497181-20497301 39 1.83e-04 CGGAAAAAAG ATTGGCAG CTCGAAATAC chrX:14201282-14201402 63 2.03e-04 TTTTTAGCGG GATGGCAG CCCCGCCGAT chr3R:10076785-10076905 39 2.03e-04 TAGAAAACAG GATGGCAG CCCCCGAGTG chrX:17143211-17143331 14 2.23e-04 TTAGAAAAGT GATGCCAG ATCGATGGAG chr2L:3023120-3023240 100 2.23e-04 ACTCGATGGG GTGGGCAG TTTCATTGCA chr3L:20769495-20769615 63 2.23e-04 TGTCCATCAA GTGGGCAG TCCCAAAACT chr2L:294715-294835 4 2.48e-04 GTT TTTGGCAG CATCGTTTTT chr2R:9810783-9810903 75 2.48e-04 TAAATTCAGT GTGGCCAG ATTACAGTAT chr2L:6127611-6127731 66 2.75e-04 GCAAAAATAA GCTGGCCG CTTGCCAACG chr2L:16738375-16738495 37 2.75e-04 CCCGCAAAAT ACTGGCAA GGCCGTTAAA chr2L:2145212-2145332 2 2.90e-04 G ACTGCCAA ATGCCAAGTT chr2R:16291444-16291564 42 2.90e-04 TTTTTGCTGA ACTGCCAA CCTGTTGTAG chr2L:21221188-21221308 61 2.90e-04 CAGTGCATCG ACTGCCAA CTCGCTTCAA chr3L:16673535-16673655 42 2.90e-04 ACTAAACAGT ACTGCCAA CTCGAGTCAC chr2R:23851490-23851610 48 2.90e-04 AAGTCGCGGG ACTGCCAA CTCCCGCGAA chrX:17652573-17652693 32 3.02e-04 TACGCGTATG GGTGGCAT GGCCGGGAAC chr3R:14298067-14298187 88 3.34e-04 GCTAAGACAA TCTGGCAA CGCGTAATGA chr2L:19580340-19580460 70 3.34e-04 TCATCGATAG GCGGCCAA TCGAGCGGGC chr3L:11765859-11765979 32 3.34e-04 ACAGTTAACA GCTGTCAG CAAGTGGACA chrX:20251127-20251247 10 3.71e-04 TAGCAGAGG TCTGCCAA ATGGCGTAAT chr2L:10056809-10056929 81 4.50e-04 CTACGTTCAC ACTGGCAT CAAATTTCGA chr2R:11405807-11405927 47 4.50e-04 GCAGGCGGGG GATGCCAA CCTGGTGGTG chr2R:21986943-21987063 62 4.50e-04 GTTTTTGGGG GATGCCAA CTTGGGCGAA chr2L:6547410-6547530 13 5.01e-04 ACTTAAAAAT GTTGTCAG GTATATGTGT chrX:17852651-17852771 40 5.01e-04 GATGGTTGGA ACTGCCAT TTTCCAAAGC chr3R:28811343-28811463 25 5.56e-04 GACGCGCACG AGTGGCAG TCCCGCTAAG chr3R:5563620-5563740 64 5.56e-04 GCACTCGCCG AGTGGCAG CCTCGCACAT chr2L:6723683-6723803 111 6.07e-04 ACATAAATAG ACTGCCAC AA chr2R:9143918-9144038 59 6.07e-04 CCCTTACGCA GCTGGCCA CTCTGGTTAG chr3R:20028009-20028129 48 6.49e-04 CGAAGGGCCG ATTGCCAT TCGCCCCGGA chr2R:22415667-22415787 28 6.49e-04 ATTATAAATT ATTGCCAT GCACCTGACG chrX:6661562-6661682 81 7.54e-04 AATACTATTT TTTGGCAT TATTTAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17748001-17748121 4.7e-06 83_[+1]_29 chr2R:23357380-23357500 9.3e-06 57_[+1]_55 chr2R:17407322-17407442 9.3e-06 105_[+1]_7 chr2L:404024-404144 1.7e-05 25_[+1]_87 chr2R:14503823-14503943 1.7e-05 80_[+1]_32 chr2R:9251960-9252080 1.7e-05 44_[+1]_68 chr2R:16850308-16850428 1.7e-05 43_[+1]_69 chr3R:11312401-11312521 1.7e-05 51_[+1]_61 chr2L:7310075-7310195 1.7e-05 51_[+1]_61 chr3L:11822203-11822323 1.7e-05 86_[+1]_26 chr3L:16351893-16352013 1.7e-05 53_[+1]_59 chr2R:10806801-10806921 1.7e-05 50_[+1]_62 chr2L:3030427-3030547 1.7e-05 60_[+1]_52 chrX:10786233-10786353 1.7e-05 86_[+1]_26 chr3R:14820042-14820162 1.7e-05 66_[+1]_46 chr2L:357902-358022 1.7e-05 77_[+1]_35 chr2R:9291669-9291789 1.7e-05 99_[+1]_13 chr2R:8614569-8614689 1.7e-05 59_[+1]_53 chrX:10785179-10785299 1.7e-05 69_[+1]_43 chr3R:10133042-10133162 1.7e-05 63_[+1]_49 chr3R:25893377-25893497 1.7e-05 69_[+1]_43 chr3L:18667269-18667389 1.7e-05 75_[+1]_37 chr2L:18689609-18689729 1.7e-05 58_[+1]_54 chr3L:19193488-19193608 1.7e-05 61_[+1]_51 chr4:835916-836036 1.7e-05 74_[+1]_38 chr3L:6850795-6850915 1.7e-05 56_[+1]_56 chr3R:30180165-30180285 1.7e-05 69_[+1]_43 chr3R:29723041-29723161 1.7e-05 61_[+1]_51 chr3L:1318340-1318460 1.7e-05 76_[+1]_36 chr3L:13046873-13046993 1.7e-05 77_[+1]_35 chr3R:17684992-17685112 1.7e-05 86_[+1]_26 chr2R:12515062-12515182 1.7e-05 44_[+1]_68 chr2R:11303406-11303526 1.7e-05 52_[+1]_60 chrX:2726559-2726679 1.7e-05 38_[+1]_74 chr3R:11231849-11231969 1.7e-05 49_[+1]_63 chr2R:8627850-8627970 1.7e-05 70_[+1]_42 chr2R:14427125-14427245 1.7e-05 26_[+1]_86 chr2L:16327002-16327122 1.7e-05 70_[+1]_42 chr3R:4833733-4833853 1.7e-05 65_[+1]_47 chr2R:23877634-23877754 1.7e-05 85_[+1]_27 chr3R:15786630-15786750 1.7e-05 36_[+1]_76 chr3L:16139249-16139369 2.4e-05 63_[+1]_49 chr2R:24068426-24068546 2.4e-05 31_[+1]_81 chr2L:2045412-2045532 2.4e-05 69_[+1]_43 chr2L:6448458-6448578 2.4e-05 65_[+1]_47 chr2L:16507780-16507900 2.4e-05 2_[+1]_110 chr3R:18252760-18252880 2.4e-05 7_[+1]_105 chr3R:7155149-7155269 2.4e-05 40_[+1]_72 chr2L:3029154-3029274 3.2e-05 73_[+1]_39 chr3R:18283556-18283676 3.2e-05 99_[+1]_13 chr2R:17412625-17412745 3.9e-05 62_[+1]_50 chr2R:9820207-9820327 3.9e-05 102_[+1]_10 chrX:12592188-12592308 3.9e-05 30_[+1]_82 chr2L:19498100-19498220 3.9e-05 25_[+1]_87 chr2R:14756318-14756438 3.9e-05 9_[+1]_103 chr3R:25626898-25627018 3.9e-05 45_[+1]_67 chr2R:11784857-11784977 3.9e-05 55_[+1]_57 chr3R:16996076-16996196 3.9e-05 26_[+1]_86 chrX:4117454-4117574 3.9e-05 75_[+1]_37 chr2L:2357359-2357479 3.9e-05 2_[+1]_110 chr2R:13861879-13861999 3.9e-05 46_[+1]_66 chr3R:7913270-7913390 3.9e-05 32_[+1]_80 chrX:8102060-8102180 3.9e-05 68_[+1]_44 chr3R:14901552-14901672 3.9e-05 69_[+1]_43 chr2R:10821597-10821717 3.9e-05 57_[+1]_55 chr3R:17687064-17687184 3.9e-05 40_[+1]_72 chr3L:6958097-6958217 3.9e-05 14_[+1]_98 chr3L:8966707-8966827 3.9e-05 63_[+1]_49 chr3R:29592215-29592335 3.9e-05 81_[+1]_31 chr2L:6036862-6036982 3.9e-05 55_[+1]_57 chr3R:28870465-28870585 3.9e-05 46_[+1]_66 chr3R:5821358-5821478 3.9e-05 53_[+1]_59 chr2L:14408512-14408632 3.9e-05 61_[+1]_51 chrX:1900603-1900723 3.9e-05 52_[+1]_60 chr2L:6130671-6130791 3.9e-05 28_[+1]_84 chr2R:14871135-14871255 6.4e-05 34_[+1]_78 chrX:17856573-17856693 6.4e-05 68_[+1]_44 chr3L:6994615-6994735 6.4e-05 14_[+1]_98 chr2R:7463122-7463242 7.1e-05 [+1]_112 chr4:68773-68893 7.9e-05 47_[+1]_65 chr3R:23159474-23159594 7.9e-05 22_[+1]_90 chr3R:8316480-8316600 7.9e-05 44_[+1]_68 chr3R:25056159-25056279 7.9e-05 28_[+1]_84 chr2L:1006582-1006702 7.9e-05 83_[+1]_29 chr3R:10885434-10885554 8.8e-05 51_[+1]_61 chrX:10463195-10463315 8.8e-05 8_[+1]_104 chr3R:9008353-9008473 8.8e-05 103_[+1]_9 chr3R:17647567-17647687 8.8e-05 42_[+1]_70 chr2L:19915350-19915470 8.8e-05 77_[+1]_35 chr3R:11230534-11230654 8.8e-05 22_[+1]_90 chr2R:14432379-14432499 0.00011 13_[+1]_99 chrX:9256052-9256172 0.00011 80_[+1]_32 chr3L:835568-835688 0.00011 69_[+1]_43 chr2R:12569807-12569927 0.00011 63_[+1]_49 chr2R:17349693-17349813 0.00011 65_[+1]_47 chr3L:14400015-14400135 0.00011 76_[+1]_36 chr2R:9145140-9145260 0.00011 57_[+1]_55 chr3R:27938413-27938533 0.00011 83_[+1]_29 chr2L:6547211-6547331 0.00011 18_[+1]_94 chr2R:12692664-12692784 0.00011 70_[+1]_42 chr3L:692907-693027 0.00012 58_[+1]_54 chr3R:5564783-5564903 0.00014 53_[+1]_59 chr2R:13206687-13206807 0.00015 20_[+1]_92 chr2R:12686141-12686261 0.00015 19_[+1]_93 chr3R:29592415-29592535 0.00015 111_[+1]_1 chr3L:20495270-20495390 0.00016 30_[+1]_82 chr2L:10743895-10744015 0.00016 45_[+1]_67 chr2R:19283951-19284071 0.00016 51_[+1]_61 chrX:6225518-6225638 0.00016 12_[+1]_100 chr2L:2575034-2575154 0.00016 43_[+1]_69 chr2R:23396680-23396800 0.00016 59_[+1]_53 chr2L:6024522-6024642 0.00018 70_[+1]_42 chr3L:20497181-20497301 0.00018 38_[+1]_74 chrX:14201282-14201402 0.0002 62_[+1]_50 chr3R:10076785-10076905 0.0002 38_[+1]_74 chrX:17143211-17143331 0.00022 13_[+1]_99 chr2L:3023120-3023240 0.00022 99_[+1]_13 chr3L:20769495-20769615 0.00022 62_[+1]_50 chr2L:294715-294835 0.00025 3_[+1]_109 chr2R:9810783-9810903 0.00025 74_[+1]_38 chr2L:6127611-6127731 0.00027 65_[+1]_47 chr2L:16738375-16738495 0.00027 36_[+1]_76 chr2L:2145212-2145332 0.00029 1_[+1]_111 chr2R:16291444-16291564 0.00029 41_[+1]_71 chr2L:21221188-21221308 0.00029 60_[+1]_52 chr3L:16673535-16673655 0.00029 41_[+1]_71 chr2R:23851490-23851610 0.00029 47_[+1]_65 chrX:17652573-17652693 0.0003 31_[+1]_81 chr3R:14298067-14298187 0.00033 87_[+1]_25 chr2L:19580340-19580460 0.00033 69_[+1]_43 chr3L:11765859-11765979 0.00033 31_[+1]_81 chrX:20251127-20251247 0.00037 9_[+1]_103 chr2L:10056809-10056929 0.00045 80_[+1]_32 chr2R:11405807-11405927 0.00045 46_[+1]_66 chr2R:21986943-21987063 0.00045 61_[+1]_51 chr2L:6547410-6547530 0.0005 12_[+1]_100 chrX:17852651-17852771 0.0005 39_[+1]_73 chr3R:28811343-28811463 0.00056 24_[+1]_88 chr3R:5563620-5563740 0.00056 63_[+1]_49 chr2L:6723683-6723803 0.00061 110_[+1]_2 chr2R:9143918-9144038 0.00061 58_[+1]_54 chr3R:20028009-20028129 0.00065 47_[+1]_65 chr2R:22415667-22415787 0.00065 27_[+1]_85 chrX:6661562-6661682 0.00075 80_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTGSCAR width=8 seqs=144 chr2R:17748001-17748121 ( 84) GCTGGCAG 1 chr2R:23357380-23357500 ( 58) GCTGCCAG 1 chr2R:17407322-17407442 ( 106) GCTGCCAG 1 chr2L:404024-404144 ( 26) GTTGGCAG 1 chr2R:14503823-14503943 ( 81) GTTGGCAG 1 chr2R:9251960-9252080 ( 45) GTTGGCAG 1 chr2R:16850308-16850428 ( 44) GTTGGCAG 1 chr3R:11312401-11312521 ( 52) GTTGGCAG 1 chr2L:7310075-7310195 ( 52) GTTGGCAG 1 chr3L:11822203-11822323 ( 87) GTTGGCAG 1 chr3L:16351893-16352013 ( 54) GTTGGCAG 1 chr2R:10806801-10806921 ( 51) GTTGGCAG 1 chr2L:3030427-3030547 ( 61) GTTGGCAG 1 chrX:10786233-10786353 ( 87) GTTGGCAG 1 chr3R:14820042-14820162 ( 67) GTTGGCAG 1 chr2L:357902-358022 ( 78) GTTGGCAG 1 chr2R:9291669-9291789 ( 100) GTTGGCAG 1 chr2R:8614569-8614689 ( 60) GTTGGCAG 1 chrX:10785179-10785299 ( 70) GTTGGCAG 1 chr3R:10133042-10133162 ( 64) GTTGGCAG 1 chr3R:25893377-25893497 ( 70) GTTGGCAG 1 chr3L:18667269-18667389 ( 76) GTTGGCAG 1 chr2L:18689609-18689729 ( 59) GTTGGCAG 1 chr3L:19193488-19193608 ( 62) GTTGGCAG 1 chr4:835916-836036 ( 75) GTTGGCAG 1 chr3L:6850795-6850915 ( 57) GTTGGCAG 1 chr3R:30180165-30180285 ( 70) GTTGGCAG 1 chr3R:29723041-29723161 ( 62) GTTGGCAG 1 chr3L:1318340-1318460 ( 77) GTTGGCAG 1 chr3L:13046873-13046993 ( 78) GTTGGCAG 1 chr3R:17684992-17685112 ( 87) GTTGGCAG 1 chr2R:12515062-12515182 ( 45) GTTGGCAG 1 chr2R:11303406-11303526 ( 53) GTTGGCAG 1 chrX:2726559-2726679 ( 39) GTTGGCAG 1 chr3R:11231849-11231969 ( 50) GTTGGCAG 1 chr2R:8627850-8627970 ( 71) GTTGGCAG 1 chr2R:14427125-14427245 ( 27) GTTGGCAG 1 chr2L:16327002-16327122 ( 71) GTTGGCAG 1 chr3R:4833733-4833853 ( 66) GTTGGCAG 1 chr2R:23877634-23877754 ( 86) GTTGGCAG 1 chr3R:15786630-15786750 ( 37) GTTGGCAG 1 chr3L:16139249-16139369 ( 64) GTTGCCAG 1 chr2R:24068426-24068546 ( 32) GTTGCCAG 1 chr2L:2045412-2045532 ( 70) GTTGCCAG 1 chr2L:6448458-6448578 ( 66) GTTGCCAG 1 chr2L:16507780-16507900 ( 3) GTTGCCAG 1 chr3R:18252760-18252880 ( 8) GTTGCCAG 1 chr3R:7155149-7155269 ( 41) GTTGCCAG 1 chr2L:3029154-3029274 ( 74) GCTGGCAA 1 chr3R:18283556-18283676 ( 100) GCTGGCAA 1 chr2R:17412625-17412745 ( 63) GCTGCCAA 1 chr2R:9820207-9820327 ( 103) GCTGCCAA 1 chrX:12592188-12592308 ( 31) GCTGCCAA 1 chr2L:19498100-19498220 ( 26) GCTGCCAA 1 chr2R:14756318-14756438 ( 10) GCTGCCAA 1 chr3R:25626898-25627018 ( 46) GCTGCCAA 1 chr2R:11784857-11784977 ( 56) GCTGCCAA 1 chr3R:16996076-16996196 ( 27) GCTGCCAA 1 chrX:4117454-4117574 ( 76) GCTGCCAA 1 chr2L:2357359-2357479 ( 3) GCTGCCAA 1 chr2R:13861879-13861999 ( 47) GCTGCCAA 1 chr3R:7913270-7913390 ( 33) GCTGCCAA 1 chrX:8102060-8102180 ( 69) GCTGCCAA 1 chr3R:14901552-14901672 ( 70) GCTGCCAA 1 chr2R:10821597-10821717 ( 58) GCTGCCAA 1 chr3R:17687064-17687184 ( 41) GCTGCCAA 1 chr3L:6958097-6958217 ( 15) GCTGCCAA 1 chr3L:8966707-8966827 ( 64) GCTGCCAA 1 chr3R:29592215-29592335 ( 82) GCTGCCAA 1 chr2L:6036862-6036982 ( 56) GCTGCCAA 1 chr3R:28870465-28870585 ( 47) GCTGCCAA 1 chr3R:5821358-5821478 ( 54) GCTGCCAA 1 chr2L:14408512-14408632 ( 62) GCTGCCAA 1 chrX:1900603-1900723 ( 53) GCTGCCAA 1 chr2L:6130671-6130791 ( 29) GCTGCCAA 1 chr2R:14871135-14871255 ( 35) GTTGCCAA 1 chrX:17856573-17856693 ( 69) GTTGCCAA 1 chr3L:6994615-6994735 ( 15) GTTGCCAA 1 chr2R:7463122-7463242 ( 1) GCTGGCAT 1 chr4:68773-68893 ( 48) GCTGCCAT 1 chr3R:23159474-23159594 ( 23) GCTGCCAT 1 chr3R:8316480-8316600 ( 45) GCTGCCAT 1 chr3R:25056159-25056279 ( 29) GCTGCCAT 1 chr2L:1006582-1006702 ( 84) GCTGCCAT 1 chr3R:10885434-10885554 ( 52) GGTGGCAG 1 chrX:10463195-10463315 ( 9) GGTGGCAG 1 chr3R:9008353-9008473 ( 104) GGTGGCAG 1 chr3R:17647567-17647687 ( 43) GGTGGCAG 1 chr2L:19915350-19915470 ( 78) GGTGGCAG 1 chr3R:11230534-11230654 ( 23) GCTGGCAC 1 chr2R:14432379-14432499 ( 14) GCTGCCAC 1 chrX:9256052-9256172 ( 81) GTTGGCAT 1 chr3L:835568-835688 ( 70) GCTGCCAC 1 chr2R:12569807-12569927 ( 64) GCTGCCAC 1 chr2R:17349693-17349813 ( 66) GTTGGCAT 1 chr3L:14400015-14400135 ( 77) GTTGGCAT 1 chr2R:9145140-9145260 ( 58) GTTGGCAT 1 chr3R:27938413-27938533 ( 84) GTTGGCAT 1 chr2L:6547211-6547331 ( 19) GTTGGCAT 1 chr2R:12692664-12692784 ( 71) GCTGCCAC 1 chr3L:692907-693027 ( 59) GTTGCCAT 1 chr3R:5564783-5564903 ( 54) GTTGGCAC 1 chr2R:13206687-13206807 ( 21) GTTGCCAC 1 chr2R:12686141-12686261 ( 20) GTTGCCAC 1 chr3R:29592415-29592535 ( 112) GCGGGCAG 1 chr3L:20495270-20495390 ( 31) TCTGGCAG 1 chr2L:10743895-10744015 ( 46) TCTGGCAG 1 chr2R:19283951-19284071 ( 52) TCTGGCAG 1 chrX:6225518-6225638 ( 13) TCTGGCAG 1 chr2L:2575034-2575154 ( 44) TCTGGCAG 1 chr2R:23396680-23396800 ( 60) TCTGGCAG 1 chr2L:6024522-6024642 ( 71) ATTGGCAG 1 chr3L:20497181-20497301 ( 39) ATTGGCAG 1 chrX:14201282-14201402 ( 63) GATGGCAG 1 chr3R:10076785-10076905 ( 39) GATGGCAG 1 chrX:17143211-17143331 ( 14) GATGCCAG 1 chr2L:3023120-3023240 ( 100) GTGGGCAG 1 chr3L:20769495-20769615 ( 63) GTGGGCAG 1 chr2L:294715-294835 ( 4) TTTGGCAG 1 chr2R:9810783-9810903 ( 75) GTGGCCAG 1 chr2L:6127611-6127731 ( 66) GCTGGCCG 1 chr2L:16738375-16738495 ( 37) ACTGGCAA 1 chr2L:2145212-2145332 ( 2) ACTGCCAA 1 chr2R:16291444-16291564 ( 42) ACTGCCAA 1 chr2L:21221188-21221308 ( 61) ACTGCCAA 1 chr3L:16673535-16673655 ( 42) ACTGCCAA 1 chr2R:23851490-23851610 ( 48) ACTGCCAA 1 chrX:17652573-17652693 ( 32) GGTGGCAT 1 chr3R:14298067-14298187 ( 88) TCTGGCAA 1 chr2L:19580340-19580460 ( 70) GCGGCCAA 1 chr3L:11765859-11765979 ( 32) GCTGTCAG 1 chrX:20251127-20251247 ( 10) TCTGCCAA 1 chr2L:10056809-10056929 ( 81) ACTGGCAT 1 chr2R:11405807-11405927 ( 47) GATGCCAA 1 chr2R:21986943-21987063 ( 62) GATGCCAA 1 chr2L:6547410-6547530 ( 13) GTTGTCAG 1 chrX:17852651-17852771 ( 40) ACTGCCAT 1 chr3R:28811343-28811463 ( 25) AGTGGCAG 1 chr3R:5563620-5563740 ( 64) AGTGGCAG 1 chr2L:6723683-6723803 ( 111) ACTGCCAC 1 chr2R:9143918-9144038 ( 59) GCTGGCCA 1 chr3R:20028009-20028129 ( 48) ATTGCCAT 1 chr2R:22415667-22415787 ( 28) ATTGCCAT 1 chrX:6661562-6661682 ( 81) TTTGGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.45994 E= 4.3e-114 -160 -1381 211 -213 -319 121 -179 64 -1381 -1381 -246 167 -1381 -1381 238 -1381 -1381 124 150 -445 -1381 241 -1381 -1381 164 -376 -1381 -1381 -12 -159 142 -120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 4.3e-114 0.104167 0.000000 0.826389 0.069444 0.034722 0.437500 0.055556 0.472222 0.000000 0.000000 0.034722 0.965278 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.541667 0.013889 0.000000 1.000000 0.000000 0.000000 0.986111 0.013889 0.000000 0.000000 0.291667 0.062500 0.513889 0.131944 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTGSCAR MEME-1 regular expression -------------------------------------------------------------------------------- G[TC]TG[GC]CA[GA] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-2 width = 8 sites = 35 llr = 358 E-value = 4.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::2: pos.-specific C a::a::1: probability G ::a::a:1 matrix T ::::a:79 bits 2.4 * ** * 2.2 * ** * 1.9 * ** * 1.7 ****** Relative 1.4 ****** * Entropy 1.2 ****** * (14.8 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10885434-10885554 70 1.17e-05 CACCGCGCAA CAGCTGTT CGTGCTATCG chr3L:1964276-1964396 110 1.17e-05 CTTTTACAAA CAGCTGTT TCA chr2L:404024-404144 7 1.17e-05 ACATAT CAGCTGTT CCTTGCATTC chr2L:10743895-10744015 12 1.17e-05 GATTCTGCAT CAGCTGTT TGAGTTCTGA chr3L:16348020-16348140 56 1.17e-05 CCAGCCGGCA CAGCTGTT CGACCTTCCC chrX:17856573-17856693 89 1.17e-05 GACCGCGGGC CAGCTGTT GACGTTTAAA chr2R:9251960-9252080 63 1.17e-05 CCCTTCGCAA CAGCTGTT GTGAATCTGG chr3R:26863136-26863256 48 1.17e-05 ACTGGTCAAA CAGCTGTT GGGCTTTTGA chr2R:13206687-13206807 42 1.17e-05 TTCAGCCGGT CAGCTGTT GCTTCCGATA chr2R:18426310-18426430 98 1.17e-05 CAACGTAAAA CAGCTGTT TGCTTTGACG chr3L:16351893-16352013 35 1.17e-05 TATTTGCAAC CAGCTGTT AGTTTGGAAA chr2L:2575034-2575154 25 1.17e-05 CAGGCGTCAA CAGCTGTT CTGAACAAAA chr3R:17647567-17647687 95 1.17e-05 GATAACAAGT CAGCTGTT CGTGTCGCTC chr2L:2357359-2357479 59 1.17e-05 TAAGCCATAT CAGCTGTT CATAAATTAA chr2L:16879375-16879495 107 1.17e-05 CGCCATAAAA CAGCTGTT ACAGAA chr3R:7913270-7913390 17 1.17e-05 TAAAGCGAAT CAGCTGTT GCCTTCGGGC chr3L:18667269-18667389 94 1.17e-05 CTTTGCGCAT CAGCTGTT GCCTCGTTCG chr3R:30180165-30180285 34 1.17e-05 CTACCATCAT CAGCTGTT TTGGTATTTT chr3R:11231849-11231969 31 1.17e-05 TTTACTGGAT CAGCTGTT CGCTGCAACG chr3R:15786630-15786750 57 1.17e-05 TGGCGTGTAA CAGCTGTT AAGTCTGCAC chrX:15062737-15062857 25 1.17e-05 GAGCAGCGCT CAGCTGTT CGGCGCAGGA chr2R:16291444-16291564 20 2.38e-05 CACAACGCCG CAGCTGAT TGTGTTTTTG chr2L:12063169-12063289 8 2.38e-05 CATCACA CAGCTGAT TTGCAGTGGA chr2L:2045412-2045532 24 2.38e-05 CCTGCTGCCA CAGCTGAT CGCCGAGTGC chr2L:4818189-4818309 25 2.38e-05 ATTAAATAAA CAGCTGAT GGACTCAATG chr2R:11619002-11619122 110 2.38e-05 TGGCGTTGCT CAGCTGAT CGA chr3L:20769495-20769615 10 2.38e-05 CAAGTATAA CAGCTGAT GTATTCTACG chr2R:12692664-12692784 26 2.38e-05 AAACAAATCA CAGCTGAT GTGCGGAGGA chrX:1375409-1375529 107 3.11e-05 gGGCGCGAAT CAGCTGCT GGAACG chr3R:7246955-7247075 36 3.11e-05 CGGAGCGCAA CAGCTGCT CAGAAGCGGA chr3L:6850795-6850915 13 3.11e-05 CATCGCAGCA CAGCTGCT GTCTCGCTCG chrX:14201282-14201402 81 3.85e-05 CCCCGCCGAT CAGCTGTG CCCAAGAACG chr2L:3030427-3030547 110 3.85e-05 GGACGTTCGT CAGCTGTG TTG chr2R:12686141-12686261 54 4.59e-05 CCGGGACAAT CAGCTGGT AACACCGAAG chr3L:1318340-1318460 98 5.36e-05 CGTTGGCGCA CAGCTGAG CCCGAAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10885434-10885554 1.2e-05 69_[+2]_43 chr3L:1964276-1964396 1.2e-05 109_[+2]_3 chr2L:404024-404144 1.2e-05 6_[+2]_106 chr2L:10743895-10744015 1.2e-05 11_[+2]_101 chr3L:16348020-16348140 1.2e-05 55_[+2]_57 chrX:17856573-17856693 1.2e-05 88_[+2]_24 chr2R:9251960-9252080 1.2e-05 62_[+2]_50 chr3R:26863136-26863256 1.2e-05 47_[+2]_65 chr2R:13206687-13206807 1.2e-05 41_[+2]_71 chr2R:18426310-18426430 1.2e-05 97_[+2]_15 chr3L:16351893-16352013 1.2e-05 34_[+2]_78 chr2L:2575034-2575154 1.2e-05 24_[+2]_88 chr3R:17647567-17647687 1.2e-05 94_[+2]_18 chr2L:2357359-2357479 1.2e-05 58_[+2]_54 chr2L:16879375-16879495 1.2e-05 106_[+2]_6 chr3R:7913270-7913390 1.2e-05 16_[+2]_96 chr3L:18667269-18667389 1.2e-05 93_[+2]_19 chr3R:30180165-30180285 1.2e-05 33_[+2]_79 chr3R:11231849-11231969 1.2e-05 30_[+2]_82 chr3R:15786630-15786750 1.2e-05 56_[+2]_56 chrX:15062737-15062857 1.2e-05 24_[+2]_88 chr2R:16291444-16291564 2.4e-05 19_[+2]_93 chr2L:12063169-12063289 2.4e-05 7_[+2]_105 chr2L:2045412-2045532 2.4e-05 23_[+2]_89 chr2L:4818189-4818309 2.4e-05 24_[+2]_88 chr2R:11619002-11619122 2.4e-05 109_[+2]_3 chr3L:20769495-20769615 2.4e-05 9_[+2]_103 chr2R:12692664-12692784 2.4e-05 25_[+2]_87 chrX:1375409-1375529 3.1e-05 106_[+2]_6 chr3R:7246955-7247075 3.1e-05 35_[+2]_77 chr3L:6850795-6850915 3.1e-05 12_[+2]_100 chrX:14201282-14201402 3.8e-05 80_[+2]_32 chr2L:3030427-3030547 3.8e-05 109_[+2]_3 chr2R:12686141-12686261 4.6e-05 53_[+2]_59 chr3L:1318340-1318460 5.4e-05 97_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=35 chr3R:10885434-10885554 ( 70) CAGCTGTT 1 chr3L:1964276-1964396 ( 110) CAGCTGTT 1 chr2L:404024-404144 ( 7) CAGCTGTT 1 chr2L:10743895-10744015 ( 12) CAGCTGTT 1 chr3L:16348020-16348140 ( 56) CAGCTGTT 1 chrX:17856573-17856693 ( 89) CAGCTGTT 1 chr2R:9251960-9252080 ( 63) CAGCTGTT 1 chr3R:26863136-26863256 ( 48) CAGCTGTT 1 chr2R:13206687-13206807 ( 42) CAGCTGTT 1 chr2R:18426310-18426430 ( 98) CAGCTGTT 1 chr3L:16351893-16352013 ( 35) CAGCTGTT 1 chr2L:2575034-2575154 ( 25) CAGCTGTT 1 chr3R:17647567-17647687 ( 95) CAGCTGTT 1 chr2L:2357359-2357479 ( 59) CAGCTGTT 1 chr2L:16879375-16879495 ( 107) CAGCTGTT 1 chr3R:7913270-7913390 ( 17) CAGCTGTT 1 chr3L:18667269-18667389 ( 94) CAGCTGTT 1 chr3R:30180165-30180285 ( 34) CAGCTGTT 1 chr3R:11231849-11231969 ( 31) CAGCTGTT 1 chr3R:15786630-15786750 ( 57) CAGCTGTT 1 chrX:15062737-15062857 ( 25) CAGCTGTT 1 chr2R:16291444-16291564 ( 20) CAGCTGAT 1 chr2L:12063169-12063289 ( 8) CAGCTGAT 1 chr2L:2045412-2045532 ( 24) CAGCTGAT 1 chr2L:4818189-4818309 ( 25) CAGCTGAT 1 chr2R:11619002-11619122 ( 110) CAGCTGAT 1 chr3L:20769495-20769615 ( 10) CAGCTGAT 1 chr2R:12692664-12692784 ( 26) CAGCTGAT 1 chrX:1375409-1375529 ( 107) CAGCTGCT 1 chr3R:7246955-7247075 ( 36) CAGCTGCT 1 chr3L:6850795-6850915 ( 13) CAGCTGCT 1 chrX:14201282-14201402 ( 81) CAGCTGTG 1 chr2L:3030427-3030547 ( 110) CAGCTGTG 1 chr2R:12686141-12686261 ( 54) CAGCTGGT 1 chr3L:1318340-1318460 ( 98) CAGCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 4.4e-025 -1177 241 -1177 -1177 166 -1177 -1177 -1177 -1177 -1177 238 -1177 -1177 241 -1177 -1177 -1177 -1177 -1177 172 -1177 -1177 238 -1177 -47 -114 -274 111 -1177 -1177 -116 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.4e-025 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.228571 0.085714 0.028571 0.657143 0.000000 0.000000 0.085714 0.914286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 regular expression -------------------------------------------------------------------------------- CAGCTG[TA]T -------------------------------------------------------------------------------- Time 13.41 secs. ******************************************************************************** ******************************************************************************** MOTIF WATCGATA MEME-3 width = 8 sites = 61 llr = 525 E-value = 1.1e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3a:::a17 pos.-specific C :::a:::: probability G ::::a::2 matrix T 6:a:::91 bits 2.4 ** 2.2 ** 1.9 ** 1.7 ***** Relative 1.4 ****** Entropy 1.2 ****** (12.4 bits) 1.0 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10407259-10407379 77 3.22e-05 TAGCATTAGT TATCGATA AGAACAAAAT chr3L:21626141-21626261 65 3.22e-05 TCGATATTCT TATCGATA AATATTACTT chrX:17652573-17652693 8 3.22e-05 TAGTTTT TATCGATA ACCCGATACG chr2L:3029154-3029274 33 3.22e-05 CACCGAGACA TATCGATA TATTCGATAT chr3L:16139249-16139369 84 3.22e-05 TGCAATTGGT TATCGATA ACTTCAGTTT chrX:1375409-1375529 56 3.22e-05 GGCCGCCACT TATCGATA GCCACTGGAA chr3R:29116295-29116415 97 3.22e-05 GGTGTCCTCA TATCGATA GCGATAATAG chr2L:10743895-10744015 69 3.22e-05 TCTTAAATGA TATCGATA GCGATGCTTC chr3L:174669-174789 21 3.22e-05 GCTTAGTATG TATCGATA GTAATCGATA chr3R:7131063-7131183 37 3.22e-05 ATATGTCTCG TATCGATA GTAGTTACTA chr2R:16850308-16850428 57 3.22e-05 GGCAGGGATG TATCGATA ACACAAATCA chr2R:13206687-13206807 1 3.22e-05 . TATCGATA TCCACTATCA chr3R:18226058-18226178 84 3.22e-05 ATTTGATTTG TATCGATA TGCAGGCTCA chr2L:16507780-16507900 103 3.22e-05 GAGTGGTAAC TATCGATA AGTATGGCGC chrX:18653069-18653189 44 3.22e-05 TGCTCGATAA TATCGATA TTTAAGCAAT chr2R:12686141-12686261 75 3.22e-05 ACCGAAGGTG TATCGATA AAACGATAGT chr2R:11619002-11619122 14 3.22e-05 CGCACAAACT TATCGATA GCGATTACAA chr2R:21687641-21687761 27 3.22e-05 TTGCCGCAAC TATCGATA GCTGGCTGGG chr3L:8956732-8956852 82 3.22e-05 CCTGGCTGTT TATCGATA AACTGCTCAC chr3L:20361606-20361726 5 3.22e-05 TTGT TATCGATA GTTTTCTGCT chr2L:16879375-16879495 49 3.22e-05 GTGAGCTAAC TATCGATA TATCCATTAG chrX:8102060-8102180 47 3.22e-05 CTGTTATCGT TATCGATA TCAGATATAT chr2R:10821597-10821717 16 3.22e-05 TGCTGCATTA TATCGATA TGTTTAAAAA chrX:17852651-17852771 64 3.22e-05 AAGCGATAAG TATCGATA GATTCTAAAA chr3R:17687064-17687184 92 3.22e-05 CTCGAAAAAG TATCGATA TATAATTTTT chr2R:11303406-11303526 96 3.22e-05 ATTGCTCAGT TATCGATA ACCATGGACG chr3R:9740768-9740888 92 6.56e-05 CGTCACGACG AATCGATA GTACCAGGAC chr3R:23061367-23061487 99 6.56e-05 AGCCGATTGC AATCGATA ACGCCGGGCG chr2R:23809047-23809167 17 6.56e-05 CTTAAATTGC AATCGATA TAAACTCTTA chr3R:18283556-18283676 86 6.56e-05 GCGAAGAACA AATCGATA GAAACGGCTG chr3R:13088510-13088630 19 6.56e-05 CATCTAAAAC AATCGATA ACTGGAAATG chr2R:14503823-14503943 73 6.56e-05 CTGATCGTTC AATCGATA GTTGGCAGCC chr3L:21441368-21441488 38 6.56e-05 ACGATAGAAC AATCGATA CTAATGGGCT chr3L:11825697-11825817 32 6.56e-05 AAACATTTAT AATCGATA GTTTTCTATC chr2L:3023120-3023240 37 6.56e-05 CGCGGAAGCT AATCGATA ACAGAAAATC chr3R:17647567-17647687 81 6.56e-05 TACGTTTCGC AATCGATA ACAAGTCAGC chr3L:13046873-13046993 108 6.56e-05 GATAGGACGT AATCGATA GACTT chr3L:14408856-14408976 25 6.56e-05 TATATGGGTC AATCGATA TACACCGACA chr3L:4262469-4262589 47 8.52e-05 TTTTAAATGT TATCGATG GAACCAGAAG chr3R:16453831-16453951 57 8.52e-05 TTTATAGGAC TATCGATG CTGGTCAAGT chr3R:25624649-25624769 43 8.52e-05 TACTCCCGGA TATCGATG TCTCTATGAT chr3L:6495254-6495374 81 8.52e-05 CGGTTTCTGT TATCGATG ATTTTATATA chr3L:15116586-15116706 22 1.05e-04 TTTTCTGGGC AATCGATG TTATTTTTCA chr2R:8631921-8632041 92 1.05e-04 TAAACCACTC AATCGATG TTTACATGGG chr2L:19498100-19498220 36 1.05e-04 GCTGCCAAGA AATCGATG ACCGAAGAAA chr3R:29592415-29592535 45 1.05e-04 GTCCTTGATA AATCGATG TGTCAAAAGG chr3R:5821358-5821478 113 1.05e-04 AAGACCAAAA AATCGATG chr3L:835568-835688 48 1.36e-04 ATACGACTCT TATCGATT GTTGTCATGA chr3L:14942870-14942990 65 1.36e-04 ACTCCTCGCC TATCGATT ATTTTTGGAG chr3R:20762647-20762767 51 1.36e-04 GTAGTTTATT TATCGATT AGTGCACTGC chr3L:11765859-11765979 66 1.36e-04 CTGTTAGGCT TATCGATT GCCAAGCCGT chr2L:19580340-19580460 61 1.56e-04 AGCGTATCGT CATCGATA GGCGGCCAAT chr2R:11297512-11297632 13 1.56e-04 CCCTACGATT CATCGATA TAGTGAAGGC chr2R:16047421-16047541 36 1.89e-04 CTTTTGCATT AATCGATT TATTATAGGC chr2R:13485420-13485540 1 1.89e-04 . AATCGATT TCTAGGGGTA chr2L:357902-358022 19 1.89e-04 TATCGAGAGG AATCGATT AAATGAAAAT chr3R:10885434-10885554 106 2.22e-04 CTCTCACGGT TATCGAAA GAGAGCT chr3R:25056159-25056279 45 2.22e-04 ATTCGTAAGT TATCGAAA TACGGTATTC chr3L:20491660-20491780 101 2.22e-04 TGGAAAACAA TATCGAAA ACAACTCGGC chr2R:9891635-9891755 15 2.34e-04 TGTACGTAAA CATCGATG ATTTTCTAGC chr3R:20028009-20028129 35 2.89e-04 CACCGATATT TATCGAAG GGCCGATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10407259-10407379 3.2e-05 76_[+3]_36 chr3L:21626141-21626261 3.2e-05 64_[+3]_48 chrX:17652573-17652693 3.2e-05 7_[+3]_105 chr2L:3029154-3029274 3.2e-05 32_[+3]_80 chr3L:16139249-16139369 3.2e-05 83_[+3]_29 chrX:1375409-1375529 3.2e-05 55_[+3]_57 chr3R:29116295-29116415 3.2e-05 96_[+3]_16 chr2L:10743895-10744015 3.2e-05 68_[+3]_44 chr3L:174669-174789 3.2e-05 20_[+3]_92 chr3R:7131063-7131183 3.2e-05 36_[+3]_76 chr2R:16850308-16850428 3.2e-05 56_[+3]_56 chr2R:13206687-13206807 3.2e-05 [+3]_112 chr3R:18226058-18226178 3.2e-05 83_[+3]_29 chr2L:16507780-16507900 3.2e-05 102_[+3]_10 chrX:18653069-18653189 3.2e-05 43_[+3]_69 chr2R:12686141-12686261 3.2e-05 74_[+3]_38 chr2R:11619002-11619122 3.2e-05 13_[+3]_99 chr2R:21687641-21687761 3.2e-05 26_[+3]_86 chr3L:8956732-8956852 3.2e-05 81_[+3]_31 chr3L:20361606-20361726 3.2e-05 4_[+3]_108 chr2L:16879375-16879495 3.2e-05 48_[+3]_64 chrX:8102060-8102180 3.2e-05 46_[+3]_66 chr2R:10821597-10821717 3.2e-05 15_[+3]_97 chrX:17852651-17852771 3.2e-05 63_[+3]_49 chr3R:17687064-17687184 3.2e-05 91_[+3]_21 chr2R:11303406-11303526 3.2e-05 95_[+3]_17 chr3R:9740768-9740888 6.6e-05 91_[+3]_21 chr3R:23061367-23061487 6.6e-05 98_[+3]_14 chr2R:23809047-23809167 6.6e-05 16_[+3]_96 chr3R:18283556-18283676 6.6e-05 85_[+3]_27 chr3R:13088510-13088630 6.6e-05 18_[+3]_94 chr2R:14503823-14503943 6.6e-05 72_[+3]_40 chr3L:21441368-21441488 6.6e-05 37_[+3]_75 chr3L:11825697-11825817 6.6e-05 31_[+3]_81 chr2L:3023120-3023240 6.6e-05 36_[+3]_76 chr3R:17647567-17647687 6.6e-05 80_[+3]_32 chr3L:13046873-13046993 6.6e-05 107_[+3]_5 chr3L:14408856-14408976 6.6e-05 24_[+3]_88 chr3L:4262469-4262589 8.5e-05 46_[+3]_66 chr3R:16453831-16453951 8.5e-05 56_[+3]_56 chr3R:25624649-25624769 8.5e-05 42_[+3]_70 chr3L:6495254-6495374 8.5e-05 80_[+3]_32 chr3L:15116586-15116706 0.00011 21_[+3]_91 chr2R:8631921-8632041 0.00011 91_[+3]_21 chr2L:19498100-19498220 0.00011 35_[+3]_77 chr3R:29592415-29592535 0.00011 44_[+3]_68 chr3R:5821358-5821478 0.00011 112_[+3] chr3L:835568-835688 0.00014 47_[+3]_65 chr3L:14942870-14942990 0.00014 64_[+3]_48 chr3R:20762647-20762767 0.00014 50_[+3]_62 chr3L:11765859-11765979 0.00014 65_[+3]_47 chr2L:19580340-19580460 0.00016 60_[+3]_52 chr2R:11297512-11297632 0.00016 12_[+3]_100 chr2R:16047421-16047541 0.00019 35_[+3]_77 chr2R:13485420-13485540 0.00019 [+3]_112 chr2L:357902-358022 0.00019 18_[+3]_94 chr3R:10885434-10885554 0.00022 105_[+3]_7 chr3R:25056159-25056279 0.00022 44_[+3]_68 chr3L:20491660-20491780 0.00022 100_[+3]_12 chr2R:9891635-9891755 0.00023 14_[+3]_98 chr3R:20028009-20028129 0.00029 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATCGATA width=8 seqs=61 chr3R:10407259-10407379 ( 77) TATCGATA 1 chr3L:21626141-21626261 ( 65) TATCGATA 1 chrX:17652573-17652693 ( 8) TATCGATA 1 chr2L:3029154-3029274 ( 33) TATCGATA 1 chr3L:16139249-16139369 ( 84) TATCGATA 1 chrX:1375409-1375529 ( 56) TATCGATA 1 chr3R:29116295-29116415 ( 97) TATCGATA 1 chr2L:10743895-10744015 ( 69) TATCGATA 1 chr3L:174669-174789 ( 21) TATCGATA 1 chr3R:7131063-7131183 ( 37) TATCGATA 1 chr2R:16850308-16850428 ( 57) TATCGATA 1 chr2R:13206687-13206807 ( 1) TATCGATA 1 chr3R:18226058-18226178 ( 84) TATCGATA 1 chr2L:16507780-16507900 ( 103) TATCGATA 1 chrX:18653069-18653189 ( 44) TATCGATA 1 chr2R:12686141-12686261 ( 75) TATCGATA 1 chr2R:11619002-11619122 ( 14) TATCGATA 1 chr2R:21687641-21687761 ( 27) TATCGATA 1 chr3L:8956732-8956852 ( 82) TATCGATA 1 chr3L:20361606-20361726 ( 5) TATCGATA 1 chr2L:16879375-16879495 ( 49) TATCGATA 1 chrX:8102060-8102180 ( 47) TATCGATA 1 chr2R:10821597-10821717 ( 16) TATCGATA 1 chrX:17852651-17852771 ( 64) TATCGATA 1 chr3R:17687064-17687184 ( 92) TATCGATA 1 chr2R:11303406-11303526 ( 96) TATCGATA 1 chr3R:9740768-9740888 ( 92) AATCGATA 1 chr3R:23061367-23061487 ( 99) AATCGATA 1 chr2R:23809047-23809167 ( 17) AATCGATA 1 chr3R:18283556-18283676 ( 86) AATCGATA 1 chr3R:13088510-13088630 ( 19) AATCGATA 1 chr2R:14503823-14503943 ( 73) AATCGATA 1 chr3L:21441368-21441488 ( 38) AATCGATA 1 chr3L:11825697-11825817 ( 32) AATCGATA 1 chr2L:3023120-3023240 ( 37) AATCGATA 1 chr3R:17647567-17647687 ( 81) AATCGATA 1 chr3L:13046873-13046993 ( 108) AATCGATA 1 chr3L:14408856-14408976 ( 25) AATCGATA 1 chr3L:4262469-4262589 ( 47) TATCGATG 1 chr3R:16453831-16453951 ( 57) TATCGATG 1 chr3R:25624649-25624769 ( 43) TATCGATG 1 chr3L:6495254-6495374 ( 81) TATCGATG 1 chr3L:15116586-15116706 ( 22) AATCGATG 1 chr2R:8631921-8632041 ( 92) AATCGATG 1 chr2L:19498100-19498220 ( 36) AATCGATG 1 chr3R:29592415-29592535 ( 45) AATCGATG 1 chr3R:5821358-5821478 ( 113) AATCGATG 1 chr3L:835568-835688 ( 48) TATCGATT 1 chr3L:14942870-14942990 ( 65) TATCGATT 1 chr3R:20762647-20762767 ( 51) TATCGATT 1 chr3L:11765859-11765979 ( 66) TATCGATT 1 chr2L:19580340-19580460 ( 61) CATCGATA 1 chr2R:11297512-11297632 ( 13) CATCGATA 1 chr2R:16047421-16047541 ( 36) AATCGATT 1 chr2R:13485420-13485540 ( 1) AATCGATT 1 chr2L:357902-358022 ( 19) AATCGATT 1 chr3R:10885434-10885554 ( 106) TATCGAAA 1 chr3R:25056159-25056279 ( 45) TATCGAAA 1 chr3L:20491660-20491780 ( 101) TATCGAAA 1 chr2R:9891635-9891755 ( 15) CATCGATG 1 chr3R:20028009-20028129 ( 35) TATCGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.54372 E= 1.1e-024 5 -194 -1257 104 166 -1257 -1257 -1257 -1257 -1257 -1257 172 -1257 241 -1257 -1257 -1257 -1257 238 -1257 166 -1257 -1257 -1257 -227 -1257 -1257 162 116 -1257 -9 -140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.1e-024 0.327869 0.049180 0.000000 0.622951 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.065574 0.000000 0.000000 0.934426 0.704918 0.000000 0.180328 0.114754 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 19.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCCMAC MEME-4 width = 8 sites = 27 llr = 260 E-value = 2.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::6a: pos.-specific C a::684:a probability G ::a3:::: matrix T :a:22::: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 *** ** Relative 1.4 *** * ** Entropy 1.2 *** * ** (13.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCAAC consensus GTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24068426-24068546 3 1.19e-05 AA CTGCCAAC ATAAAATAAA chr3R:18283556-18283676 57 1.19e-05 CCCAATCGCG CTGCCAAC TGCTTTGATT chr3L:692907-693027 83 1.19e-05 GTAAAAAACA CTGCCAAC TTCAAGGACT chrX:10786233-10786353 62 1.19e-05 ACGAGCCGGC CTGCCAAC TCGTTGCTAT chr3R:15485979-15486099 84 1.19e-05 AAGAAGAAGC CTGCCCAC TCTGCGCTTT chr3L:6495254-6495374 29 1.19e-05 CATCAAAGGA CTGCCCAC TCGTTTGCAT chr3R:5563620-5563740 35 1.19e-05 ATTCGCGGTA CTGCCCAC TTGCTGGTTC chr2R:20262924-20263044 3 1.19e-05 GC CTGCCAAC TGGTTTGATT chrX:2726559-2726679 77 1.19e-05 TCATTCAGAG CTGCCAAC TCTATCTATT chr2R:17748001-17748121 54 1.19e-05 CGCCAGGGGG CTGCCAAC TTTACTTGAA chr3R:11230534-11230654 37 1.19e-05 GCACGCGGGC CTGCCAAC TTGTCATGTT chrX:9256052-9256172 105 2.40e-05 GTTGAGATAT CTGGCAAC GCCCCGTA chr3R:18252760-18252880 56 2.40e-05 TGTGAGCAGT CTGGCAAC ACTAGACAAA chr2R:7463122-7463242 9 2.40e-05 GCTGGCAT CTGGCAAC GCCCGCTATA chr2R:8614569-8614689 89 2.40e-05 CGTTTTTAGG CTGGCAAC ACCCTCCAGC chr3R:29592215-29592335 94 2.40e-05 TGCCAACTTG CTGGCCAC TAAACAAATT chr2R:12569807-12569927 30 4.31e-05 AGAACCGGAG CTGTCAAC TTAGTTTCTT chr2R:11784857-11784977 86 4.31e-05 CCACATGGCG CTGTCAAC GCGATAATCA chr3R:7246955-7247075 11 4.31e-05 GCCAACGGAA CTGTCCAC TCGTCAGCGG chrX:5771050-5771170 65 4.31e-05 GCACCGGGGA CTGTCCAC TTGCTAATAC chrX:15062737-15062857 43 4.31e-05 CGGCGCAGGA CTGTCCAC TTCCGCCCGT chr2L:4444678-4444798 89 6.22e-05 AAAACAAGTG CTGCTAAC TTCACACGTG chr3L:8956732-8956852 92 6.22e-05 TATCGATAAA CTGCTCAC ATAACCTGCT chr3R:27274650-27274770 92 6.22e-05 AGAAAAACAC CTGCTCAC ATTTTATTTG chr3R:17085260-17085380 58 6.22e-05 CTTTTCGGAA CTGCTAAC GAGTTAAATA chr3L:17465833-17465953 106 8.16e-05 GTATAACTAA CTGGTCAC ACTAAAG chr3L:14942870-14942990 108 8.16e-05 GCTCATAGTT CTGGTAAC AGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24068426-24068546 1.2e-05 2_[+4]_110 chr3R:18283556-18283676 1.2e-05 56_[+4]_56 chr3L:692907-693027 1.2e-05 82_[+4]_30 chrX:10786233-10786353 1.2e-05 61_[+4]_51 chr3R:15485979-15486099 1.2e-05 83_[+4]_29 chr3L:6495254-6495374 1.2e-05 28_[+4]_84 chr3R:5563620-5563740 1.2e-05 34_[+4]_78 chr2R:20262924-20263044 1.2e-05 2_[+4]_110 chrX:2726559-2726679 1.2e-05 76_[+4]_36 chr2R:17748001-17748121 1.2e-05 53_[+4]_59 chr3R:11230534-11230654 1.2e-05 36_[+4]_76 chrX:9256052-9256172 2.4e-05 104_[+4]_8 chr3R:18252760-18252880 2.4e-05 55_[+4]_57 chr2R:7463122-7463242 2.4e-05 8_[+4]_104 chr2R:8614569-8614689 2.4e-05 88_[+4]_24 chr3R:29592215-29592335 2.4e-05 93_[+4]_19 chr2R:12569807-12569927 4.3e-05 29_[+4]_83 chr2R:11784857-11784977 4.3e-05 85_[+4]_27 chr3R:7246955-7247075 4.3e-05 10_[+4]_102 chrX:5771050-5771170 4.3e-05 64_[+4]_48 chrX:15062737-15062857 4.3e-05 42_[+4]_70 chr2L:4444678-4444798 6.2e-05 88_[+4]_24 chr3L:8956732-8956852 6.2e-05 91_[+4]_21 chr3R:27274650-27274770 6.2e-05 91_[+4]_21 chr3R:17085260-17085380 6.2e-05 57_[+4]_55 chr3L:17465833-17465953 8.2e-05 105_[+4]_7 chr3L:14942870-14942990 8.2e-05 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCCMAC width=8 seqs=27 chr2R:24068426-24068546 ( 3) CTGCCAAC 1 chr3R:18283556-18283676 ( 57) CTGCCAAC 1 chr3L:692907-693027 ( 83) CTGCCAAC 1 chrX:10786233-10786353 ( 62) CTGCCAAC 1 chr3R:15485979-15486099 ( 84) CTGCCCAC 1 chr3L:6495254-6495374 ( 29) CTGCCCAC 1 chr3R:5563620-5563740 ( 35) CTGCCCAC 1 chr2R:20262924-20263044 ( 3) CTGCCAAC 1 chrX:2726559-2726679 ( 77) CTGCCAAC 1 chr2R:17748001-17748121 ( 54) CTGCCAAC 1 chr3R:11230534-11230654 ( 37) CTGCCAAC 1 chrX:9256052-9256172 ( 105) CTGGCAAC 1 chr3R:18252760-18252880 ( 56) CTGGCAAC 1 chr2R:7463122-7463242 ( 9) CTGGCAAC 1 chr2R:8614569-8614689 ( 89) CTGGCAAC 1 chr3R:29592215-29592335 ( 94) CTGGCCAC 1 chr2R:12569807-12569927 ( 30) CTGTCAAC 1 chr2R:11784857-11784977 ( 86) CTGTCAAC 1 chr3R:7246955-7247075 ( 11) CTGTCCAC 1 chrX:5771050-5771170 ( 65) CTGTCCAC 1 chrX:15062737-15062857 ( 43) CTGTCCAC 1 chr2L:4444678-4444798 ( 89) CTGCTAAC 1 chr3L:8956732-8956852 ( 92) CTGCTCAC 1 chr3R:27274650-27274770 ( 92) CTGCTCAC 1 chr3R:17085260-17085380 ( 58) CTGCTAAC 1 chr3L:17465833-17465953 ( 106) CTGGTCAC 1 chr3L:14942870-14942990 ( 108) CTGGTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 2.5e-006 -1140 241 -1140 -1140 -1140 -1140 -1140 172 -1140 -1140 238 -1140 -1140 156 44 -71 -1140 204 -1140 -45 99 97 -1140 -1140 166 -1140 -1140 -1140 -1140 241 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.5e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.259259 0.185185 0.000000 0.777778 0.000000 0.222222 0.629630 0.370370 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCMAC MEME-4 regular expression -------------------------------------------------------------------------------- CTG[CG][CT][AC]AC -------------------------------------------------------------------------------- Time 25.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-5 width = 8 sites = 18 llr = 187 E-value = 1.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::21:9:: pos.-specific C :::::1aa probability G a18:a1:: matrix T :9:9:::: bits 2.4 * * ** 2.2 * * ** 1.9 * * ** 1.7 * * * ** Relative 1.4 * *** ** Entropy 1.2 ******** (15.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24527925-24528045 71 7.38e-06 TAAGTATGTA GTGTGACC AGCAGCACAA chr3R:20824196-20824316 24 7.38e-06 TAGCAGCCCA GTGTGACC AACAAGTTAT chr2R:9891635-9891755 52 7.38e-06 CGCAGCTCGA GTGTGACC GTGCGGCGAC chr2R:19283951-19284071 2 7.38e-06 A GTGTGACC GTTGTTGTCA chr2L:6127611-6127731 35 7.38e-06 CTCAAGCACA GTGTGACC GTGCGAGGAT chr3R:15485979-15486099 36 7.38e-06 TCCTTCATCA GTGTGACC GCTTTTAGTA chr3R:30177684-30177804 12 7.38e-06 CTGTTCGGCA GTGTGACC TGAGTTTACT chr2L:16738375-16738495 8 7.38e-06 ATCAGCA GTGTGACC GTCTTGATGT chr3L:6958299-6958419 14 7.38e-06 TTCGGAAGTG GTGTGACC GCATGAAGTT chr2R:17748001-17748121 104 7.38e-06 CCACTGGCTA GTGTGACC GTTGATCAT chr2L:11989844-11989964 28 1.20e-05 AATAATCTTG GGGTGACC ATTATAAAAT chr2L:2575034-2575154 79 1.20e-05 TTAATTATTA GGGTGACC AGTTCCAAGC chr3L:19642785-19642905 58 2.42e-05 ATTCGTTTCG GTATGACC GTTGACTGTA chr3L:16351893-16352013 75 2.42e-05 TCCTTGAGCA GTATGACC ATTGCTGCCA chr2R:13861879-13861999 28 2.42e-05 ATGCAGGTTA GTATGACC GTCGCTACAT chr3R:16453831-16453951 18 3.31e-05 GTATTCCACT GTGTGGCC TTTTATCGAA chr3R:12431187-12431307 92 3.31e-05 GAAATCGGTA GTGTGCCC ATTTGTTTAG chr2R:11619002-11619122 32 4.08e-05 GCGATTACAA GTGAGACC AGCTGCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24527925-24528045 7.4e-06 70_[+5]_42 chr3R:20824196-20824316 7.4e-06 23_[+5]_89 chr2R:9891635-9891755 7.4e-06 51_[+5]_61 chr2R:19283951-19284071 7.4e-06 1_[+5]_111 chr2L:6127611-6127731 7.4e-06 34_[+5]_78 chr3R:15485979-15486099 7.4e-06 35_[+5]_77 chr3R:30177684-30177804 7.4e-06 11_[+5]_101 chr2L:16738375-16738495 7.4e-06 7_[+5]_105 chr3L:6958299-6958419 7.4e-06 13_[+5]_99 chr2R:17748001-17748121 7.4e-06 103_[+5]_9 chr2L:11989844-11989964 1.2e-05 27_[+5]_85 chr2L:2575034-2575154 1.2e-05 78_[+5]_34 chr3L:19642785-19642905 2.4e-05 57_[+5]_55 chr3L:16351893-16352013 2.4e-05 74_[+5]_38 chr2R:13861879-13861999 2.4e-05 27_[+5]_85 chr3R:16453831-16453951 3.3e-05 17_[+5]_95 chr3R:12431187-12431307 3.3e-05 91_[+5]_21 chr2R:11619002-11619122 4.1e-05 31_[+5]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=18 chr3R:24527925-24528045 ( 71) GTGTGACC 1 chr3R:20824196-20824316 ( 24) GTGTGACC 1 chr2R:9891635-9891755 ( 52) GTGTGACC 1 chr2R:19283951-19284071 ( 2) GTGTGACC 1 chr2L:6127611-6127731 ( 35) GTGTGACC 1 chr3R:15485979-15486099 ( 36) GTGTGACC 1 chr3R:30177684-30177804 ( 12) GTGTGACC 1 chr2L:16738375-16738495 ( 8) GTGTGACC 1 chr3L:6958299-6958419 ( 14) GTGTGACC 1 chr2R:17748001-17748121 ( 104) GTGTGACC 1 chr2L:11989844-11989964 ( 28) GGGTGACC 1 chr2L:2575034-2575154 ( 79) GGGTGACC 1 chr3L:19642785-19642905 ( 58) GTATGACC 1 chr3L:16351893-16352013 ( 75) GTATGACC 1 chr2R:13861879-13861999 ( 28) GTATGACC 1 chr3R:16453831-16453951 ( 18) GTGTGGCC 1 chr3R:12431187-12431307 ( 92) GTGTGCCC 1 chr2R:11619002-11619122 ( 32) GTGAGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.5e-003 -1081 -1081 238 -1081 -1081 -1081 -79 155 -92 -1081 212 -1081 -250 -1081 -1081 164 -1081 -1081 238 -1081 149 -176 -178 -1081 -1081 241 -1081 -1081 -1081 241 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.166667 0.000000 0.833333 0.000000 0.055556 0.000000 0.000000 0.944444 0.000000 0.000000 1.000000 0.000000 0.888889 0.055556 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-5 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 30.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15062737-15062857 2.69e-03 3_[+2(2.38e-05)]_13_[+2(1.17e-05)]_\ 10_[+4(4.31e-05)]_70 chr3R:15786630-15786750 6.68e-04 36_[+1(1.68e-05)]_12_[+2(1.17e-05)]_\ 56 chr2L:6130671-6130791 1.00e-03 29_[+4(1.19e-05)]_83 chr3R:11230534-11230654 1.42e-03 22_[+1(8.78e-05)]_6_[+4(1.19e-05)]_\ 76 chr2R:23877634-23877754 5.64e-03 85_[+1(1.68e-05)]_27 chrX:1900603-1900723 9.61e-04 53_[+4(1.19e-05)]_59 chr3R:4833733-4833853 1.87e-02 65_[+1(1.68e-05)]_47 chr2L:16327002-16327122 1.90e-02 70_[+1(1.68e-05)]_42 chr2L:14408512-14408632 2.85e-04 62_[+4(1.19e-05)]_50 chr2R:14427125-14427245 6.07e-02 26_[+1(1.68e-05)]_86 chr3R:5821358-5821478 9.73e-05 54_[+4(1.19e-05)]_58 chr2R:12692664-12692784 3.97e-04 25_[+2(2.38e-05)]_87 chr3R:11957521-11957641 8.33e-01 120 chr2R:8627850-8627970 6.38e-03 2_[+5(8.62e-05)]_60_[+1(1.68e-05)]_\ 42 chr3R:11231849-11231969 1.81e-04 30_[+2(1.17e-05)]_11_[+1(1.68e-05)]_\ 63 chr3L:11765859-11765979 2.13e-04 29_[+2(8.22e-05)]_83 chr2R:17748001-17748121 2.83e-06 53_[+4(1.19e-05)]_22_[+1(4.66e-06)]_\ 12_[+5(7.38e-06)]_9 chr3L:5133843-5133963 5.35e-01 120 chr2L:6547211-6547331 4.29e-01 120 chr2R:23851490-23851610 1.45e-02 48_[+4(1.19e-05)]_64 chr3L:14408856-14408976 6.08e-02 24_[+3(6.56e-05)]_88 chr3L:6958299-6958419 1.36e-02 13_[+5(7.38e-06)]_99 chrX:2726559-2726679 4.36e-04 38_[+1(1.68e-05)]_30_[+4(1.19e-05)]_\ 36 chr2R:11303406-11303526 2.24e-03 52_[+1(1.68e-05)]_35_[+3(3.22e-05)]_\ 17 chr3R:28870465-28870585 1.10e-03 47_[+4(1.19e-05)]_65 chrX:9149090-9149210 8.13e-01 120 chr2L:16738375-16738495 2.18e-04 7_[+5(7.38e-06)]_105 chr2R:12515062-12515182 6.20e-02 44_[+1(1.68e-05)]_68 chr3R:17684992-17685112 2.68e-02 86_[+1(1.68e-05)]_26 chr2R:8625334-8625454 9.97e-01 120 chr2L:6036862-6036982 6.36e-04 56_[+4(1.19e-05)]_56 chr3R:30177684-30177804 4.77e-02 11_[+5(7.38e-06)]_101 chr3R:29592215-29592335 2.70e-04 82_[+4(1.19e-05)]_3_[+4(2.40e-05)]_\ 19 chr3L:8966707-8966827 3.48e-04 64_[+4(1.19e-05)]_48 chr2L:15256327-15256447 7.00e-01 120 chr3L:13046873-13046993 7.10e-03 77_[+1(1.68e-05)]_22_[+3(6.56e-05)]_\ 5 chr3L:6958097-6958217 2.63e-03 15_[+4(1.19e-05)]_97 chr2R:20262924-20263044 3.40e-02 2_[+4(1.19e-05)]_110 chr3R:17687064-17687184 6.10e-06 41_[+4(1.19e-05)]_42_[+3(3.22e-05)]_\ 21 chr3R:5563620-5563740 3.05e-03 34_[+4(1.19e-05)]_78 chrX:17852651-17852771 4.09e-03 63_[+3(3.22e-05)]_49 chr3R:10076785-10076905 9.02e-02 120 chr3L:20491660-20491780 4.52e-02 120 chr3R:9412378-9412498 9.79e-01 120 chr2R:10821597-10821717 3.80e-05 15_[+3(3.22e-05)]_35_[+4(1.19e-05)]_\ 54 chr3R:14901552-14901672 1.22e-03 70_[+4(1.19e-05)]_42 chr3R:29592415-29592535 1.41e-02 120 chrX:5771050-5771170 6.87e-02 64_[+4(4.31e-05)]_48 chrX:8102060-8102180 5.88e-05 46_[+3(3.22e-05)]_15_[+4(1.19e-05)]_\ 43 chr3L:1318340-1318460 3.37e-04 76_[+1(1.68e-05)]_13_[+2(5.36e-05)]_\ 15 chr3R:29723041-29723161 5.07e-02 61_[+1(1.68e-05)]_51 chr3R:30180165-30180285 1.54e-04 33_[+2(1.17e-05)]_28_[+1(1.68e-05)]_\ 43 chr3L:6850795-6850915 3.37e-04 12_[+2(3.11e-05)]_36_[+1(1.68e-05)]_\ 56 chr3R:27938413-27938533 1.36e-01 120 chr2L:1006582-1006702 2.65e-02 52_[+1(7.85e-05)]_23_[+1(7.85e-05)]_\ 29 chr2R:9145140-9145260 6.60e-02 120 chr4:835916-836036 5.61e-03 74_[+1(1.68e-05)]_38 chr2R:10807007-10807127 8.50e-01 120 chr3L:19193488-19193608 4.51e-03 61_[+1(1.68e-05)]_51 chr2L:18689609-18689729 2.00e-03 58_[+1(1.68e-05)]_54 chr2R:14757848-14757968 5.72e-01 120 chr3L:20769495-20769615 1.82e-03 9_[+2(2.38e-05)]_31_[+2(8.22e-05)]_\ 64 chr3R:25065655-25065775 9.99e-01 120 chr3L:16673535-16673655 5.49e-03 42_[+4(1.19e-05)]_70 chr2R:20263126-20263246 7.83e-01 120 chr3L:18667269-18667389 1.04e-03 75_[+1(1.68e-05)]_10_[+2(1.17e-05)]_\ 19 chr3L:14400015-14400135 6.02e-02 120 chr2R:21986943-21987063 7.40e-02 120 chr3R:7913270-7913390 2.07e-05 16_[+2(1.17e-05)]_9_[+4(1.19e-05)]_\ 79 chr3R:25893377-25893497 1.48e-02 69_[+1(1.68e-05)]_43 chr3R:7155149-7155269 1.00e-01 40_[+1(2.41e-05)]_72 chr2R:23396680-23396800 5.86e-02 120 chr3L:19803366-19803486 9.63e-01 120 chr3L:6495254-6495374 6.42e-04 28_[+4(1.19e-05)]_44_[+3(8.52e-05)]_\ 32 chr3R:28811343-28811463 5.23e-01 120 chr3R:17687264-17687384 7.76e-01 120 chr3R:10133042-10133162 1.80e-02 63_[+1(1.68e-05)]_49 chr2R:17407322-17407442 4.07e-03 105_[+1(9.25e-06)]_7 chr2R:11297512-11297632 3.08e-02 120 chr2L:16879375-16879495 2.05e-04 48_[+3(3.22e-05)]_50_[+2(1.17e-05)]_\ 6 chr2R:9810783-9810903 1.66e-02 72_[+5(3.31e-05)]_40 chr2R:13861879-13861999 3.25e-05 27_[+5(2.42e-05)]_12_[+4(1.19e-05)]_\ 65 chrX:10785179-10785299 1.73e-02 69_[+1(1.68e-05)]_43 chr3L:20497181-20497301 6.53e-02 120 chr2L:19915350-19915470 9.65e-02 77_[+1(8.78e-05)]_35 chr2L:2357359-2357479 9.72e-06 3_[+4(1.19e-05)]_47_[+2(1.17e-05)]_\ 54 chr2R:22415667-22415787 2.25e-01 120 chr2R:8614569-8614689 2.84e-03 59_[+1(1.68e-05)]_21_[+4(2.40e-05)]_\ 24 chr3R:15485979-15486099 1.04e-04 35_[+5(7.38e-06)]_40_[+4(1.19e-05)]_\ 29 chr2R:9291669-9291789 1.39e-02 99_[+1(1.68e-05)]_13 chr2R:17349693-17349813 3.46e-02 120 chr2R:21634514-21634634 9.97e-01 120 chr3R:25624649-25624769 5.33e-03 42_[+3(8.52e-05)]_70 chr3R:17647567-17647687 5.17e-05 42_[+1(8.78e-05)]_30_[+3(6.56e-05)]_\ 6_[+2(1.17e-05)]_18 chr2L:357902-358022 1.29e-03 77_[+1(1.68e-05)]_35 chr3R:14820042-14820162 3.49e-03 66_[+1(1.68e-05)]_46 chr2R:7463122-7463242 2.46e-03 [+1(7.12e-05)]_[+4(2.40e-05)]_104 chr3R:7246955-7247075 7.12e-03 10_[+4(4.31e-05)]_17_[+2(3.11e-05)]_\ 77 chrX:4117454-4117574 7.05e-05 76_[+4(1.19e-05)]_36 chr3R:17085260-17085380 1.74e-01 57_[+4(6.22e-05)]_55 chrX:10786233-10786353 1.62e-03 61_[+4(1.19e-05)]_17_[+1(1.68e-05)]_\ 26 chr3L:20361606-20361726 7.52e-02 4_[+3(3.22e-05)]_13_[+3(8.52e-05)]_\ 87 chr3R:16996076-16996196 8.41e-04 27_[+4(1.19e-05)]_85 chr2R:11784857-11784977 2.69e-05 56_[+4(1.19e-05)]_21_[+4(4.31e-05)]_\ 27 chr3R:18252760-18252880 1.24e-04 7_[+1(2.41e-05)]_40_[+4(2.40e-05)]_\ 57 chr2L:2575034-2575154 1.23e-05 24_[+2(1.17e-05)]_46_[+5(1.20e-05)]_\ 34 chr3R:27274650-27274770 5.63e-02 91_[+4(6.22e-05)]_21 chr2L:3030427-3030547 1.35e-04 60_[+1(1.68e-05)]_41_[+2(3.85e-05)]_\ 3 chr2R:20643895-20644015 1.00e+00 120 chr3R:20762647-20762767 1.82e-01 120 chr2R:10806801-10806921 4.47e-02 50_[+1(1.68e-05)]_62 chrX:6225518-6225638 2.04e-02 120 chr3R:25056159-25056279 2.42e-02 28_[+1(7.85e-05)]_84 chr3R:25626898-25627018 2.14e-04 46_[+4(1.19e-05)]_66 chr3L:8956732-8956852 5.78e-04 81_[+3(3.22e-05)]_2_[+4(6.22e-05)]_\ 21 chr2L:6127611-6127731 5.32e-04 34_[+5(7.38e-06)]_78 chr2R:19283951-19284071 5.14e-04 1_[+5(7.38e-06)]_111 chr3L:16351893-16352013 1.50e-05 34_[+2(1.17e-05)]_11_[+1(1.68e-05)]_\ 13_[+5(2.42e-05)]_38 chr2L:3023120-3023240 2.00e-03 36_[+3(6.56e-05)]_76 chrX:2585442-2585562 8.41e-01 120 chr2R:11405807-11405927 2.26e-02 120 chr3R:8316480-8316600 2.30e-02 44_[+1(7.85e-05)]_68 chr2L:4444678-4444798 9.70e-02 88_[+4(6.22e-05)]_24 chr3L:692907-693027 1.05e-03 82_[+4(1.19e-05)]_30 chr2R:13485420-13485540 1.05e-01 120 chrX:625246-625366 8.22e-01 120 chr3L:11822203-11822323 2.42e-03 86_[+1(1.68e-05)]_26 chr3R:5733363-5733483 9.41e-01 120 chrX:14201282-14201402 9.79e-04 80_[+2(3.85e-05)]_32 chr3L:11825697-11825817 1.80e-01 31_[+3(6.56e-05)]_81 chr2R:19395985-19396105 5.56e-01 120 chrX:16746917-16747037 2.87e-01 120 chr2L:2580126-2580246 9.80e-01 120 chr3L:21441368-21441488 1.06e-01 37_[+3(6.56e-05)]_75 chr2L:7310075-7310195 6.54e-02 51_[+1(1.68e-05)]_61 chr2R:14756318-14756438 4.58e-04 10_[+4(1.19e-05)]_102 chr3R:31405075-31405195 4.48e-01 120 chr2L:6547410-6547530 5.68e-01 120 chr2R:18426310-18426430 1.23e-02 97_[+2(1.17e-05)]_15 chr2R:13506285-13506405 5.59e-01 120 chr2R:21687641-21687761 1.13e-01 26_[+3(3.22e-05)]_86 chr2L:21221188-21221308 9.68e-03 61_[+4(1.19e-05)]_51 chr2R:23357380-23357500 1.38e-02 57_[+1(9.25e-06)]_55 chr3R:11312401-11312521 5.16e-03 51_[+1(1.68e-05)]_61 chr2R:11619002-11619122 5.33e-05 13_[+3(3.22e-05)]_10_[+5(4.08e-05)]_\ 70_[+2(2.38e-05)]_3 chr2L:8415251-8415371 5.14e-01 120 chr3R:11957720-11957840 9.98e-01 120 chr2R:12686141-12686261 6.06e-06 53_[+2(4.59e-05)]_13_[+3(3.22e-05)]_\ 38 chr2L:19498100-19498220 1.60e-05 25_[+1(3.94e-05)]_87 chr3L:6994615-6994735 3.66e-03 14_[+1(6.39e-05)]_24_[+1(7.85e-05)]_\ 66 chrX:18653069-18653189 5.17e-02 43_[+3(3.22e-05)]_69 chr2L:16507780-16507900 1.38e-04 2_[+1(2.41e-05)]_92_[+3(3.22e-05)]_\ 10 chr2R:8631921-8632041 1.96e-01 120 chr2L:6024522-6024642 1.77e-01 120 chr2L:6448458-6448578 1.68e-01 65_[+1(2.41e-05)]_47 chr2L:3514706-3514826 7.15e-01 120 chr3R:18226058-18226178 1.28e-02 8_[+3(3.22e-05)]_67_[+3(3.22e-05)]_\ 29 chr3R:5564783-5564903 6.69e-02 120 chr3L:3143469-3143589 6.24e-01 120 chr4:68991-69111 5.47e-01 120 chr2L:294715-294835 4.27e-02 120 chr3R:16996279-16996399 7.55e-01 120 chrX:12592188-12592308 4.26e-02 30_[+1(3.94e-05)]_82 chr2R:13206687-13206807 1.82e-05 [+3(3.22e-05)]_33_[+2(1.17e-05)]_71 chr2R:16850308-16850428 3.92e-03 43_[+1(1.68e-05)]_5_[+3(3.22e-05)]_\ 56 chr2R:16955309-16955429 9.54e-01 120 chr3R:26863136-26863256 2.73e-02 47_[+2(1.17e-05)]_65 chr2R:9251960-9252080 2.80e-04 44_[+1(1.68e-05)]_10_[+2(1.17e-05)]_\ 50 chr3R:9725686-9725806 8.24e-01 120 chr3R:28811554-28811674 6.88e-01 120 chr3R:23159474-23159594 8.67e-02 22_[+1(7.85e-05)]_90 chr3R:7131063-7131183 4.72e-02 36_[+3(3.22e-05)]_76 chrX:17856573-17856693 5.81e-04 68_[+1(6.39e-05)]_12_[+2(1.17e-05)]_\ 24 chr2L:4818189-4818309 6.41e-02 24_[+2(2.38e-05)]_88 chr3L:5134122-5134242 1.09e-01 120 chr3R:6380294-6380414 6.72e-01 120 chr2L:2045412-2045532 4.15e-04 23_[+2(2.38e-05)]_38_[+1(2.41e-05)]_\ 43 chr3L:19845140-19845260 3.92e-01 120 chrX:13722033-13722153 9.06e-01 120 chr2R:14503823-14503943 3.32e-04 72_[+3(6.56e-05)]_[+1(1.68e-05)]_32 chr2L:12063169-12063289 3.13e-03 7_[+2(2.38e-05)]_105 chr3R:13088510-13088630 4.39e-02 18_[+3(6.56e-05)]_94 chr3R:20028009-20028129 2.10e-02 120 chr3R:18283556-18283676 1.45e-05 56_[+4(1.19e-05)]_21_[+3(6.56e-05)]_\ 6_[+1(3.18e-05)]_13 chr2R:9891635-9891755 7.46e-03 51_[+5(7.38e-06)]_61 chrX:17636090-17636210 5.79e-01 120 chr2R:14235485-14235605 9.77e-01 120 chr2L:19580340-19580460 1.57e-02 120 chr2R:12569807-12569927 3.83e-03 29_[+4(4.31e-05)]_83 chr3L:16348020-16348140 4.37e-03 55_[+2(1.17e-05)]_57 chr3L:174669-174789 1.44e-01 20_[+3(3.22e-05)]_2_[+3(6.56e-05)]_\ 82 chr2R:9143918-9144038 7.63e-04 59_[+4(2.40e-05)]_53 chr2R:16291444-16291564 3.16e-04 19_[+2(2.38e-05)]_15_[+4(1.19e-05)]_\ 70 chr2R:24068426-24068546 1.51e-04 2_[+4(1.19e-05)]_21_[+1(2.41e-05)]_\ 81 chr3R:14298067-14298187 2.84e-02 88_[+4(2.40e-05)]_24 chr2L:10743895-10744015 5.41e-06 11_[+2(1.17e-05)]_49_[+3(3.22e-05)]_\ 44 chr3R:23053294-23053414 5.60e-01 120 chr3R:29116295-29116415 1.58e-02 96_[+3(3.22e-05)]_16 chr4:68773-68893 1.65e-01 47_[+1(7.85e-05)]_65 chr2L:10056809-10056929 4.57e-02 120 chr3R:9008353-9008473 1.62e-02 103_[+1(8.78e-05)]_9 chrX:1375409-1375529 1.25e-04 55_[+3(3.22e-05)]_43_[+2(3.11e-05)]_\ 6 chr3L:14942870-14942990 8.53e-03 107_[+4(8.16e-05)]_5 chr2R:23809047-23809167 2.88e-01 16_[+3(6.56e-05)]_96 chr2R:14871135-14871255 6.35e-02 34_[+1(6.39e-05)]_78 chr3R:12431187-12431307 2.00e-02 91_[+5(3.31e-05)]_21 chr3L:3143686-3143806 7.07e-01 120 chrX:20251127-20251247 1.38e-01 120 chr3R:16453831-16453951 2.39e-03 17_[+5(3.31e-05)]_31_[+3(8.52e-05)]_\ 56 chr3R:20824196-20824316 4.37e-02 23_[+5(7.38e-06)]_51_[+5(8.62e-05)]_\ 30 chr2L:404024-404144 2.66e-04 6_[+2(1.17e-05)]_11_[+1(1.68e-05)]_\ 87 chr3L:15116586-15116706 2.03e-01 120 chr2L:11989844-11989964 5.92e-03 27_[+5(1.20e-05)]_85 chr3R:23061367-23061487 2.23e-01 98_[+3(6.56e-05)]_14 chr3L:16139249-16139369 1.54e-03 63_[+1(2.41e-05)]_12_[+3(3.22e-05)]_\ 29 chr2L:12712453-12712573 2.20e-01 120 chrX:17143211-17143331 9.76e-02 120 chr2R:16047421-16047541 3.46e-01 120 chr2L:6723683-6723803 2.16e-01 120 chr3L:19642785-19642905 1.78e-02 57_[+5(2.42e-05)]_55 chrX:6661562-6661682 5.15e-01 120 chr2R:9820207-9820327 1.65e-03 103_[+4(1.19e-05)]_9 chr3R:10133243-10133363 2.50e-01 120 chr2R:17412625-17412745 3.39e-04 63_[+4(1.19e-05)]_49 chrX:10463195-10463315 1.67e-01 8_[+1(8.78e-05)]_104 chr2L:3029154-3029274 1.62e-05 32_[+3(3.22e-05)]_34_[+4(2.40e-05)]_\ 38 chr3L:1964276-1964396 1.30e-01 109_[+2(1.17e-05)]_3 chr2R:9114083-9114203 4.39e-01 120 chr2L:2145212-2145332 4.99e-02 120 chr3L:835568-835688 2.34e-02 120 chrX:9256052-9256172 1.64e-03 104_[+4(2.40e-05)]_8 chr3R:31571897-31572017 9.19e-01 120 chrX:17652573-17652693 6.99e-03 7_[+3(3.22e-05)]_76_[+3(3.22e-05)]_\ 21 chr3L:21626141-21626261 1.48e-01 64_[+3(3.22e-05)]_48 chr3L:1329793-1329913 4.15e-01 120 chr3R:22375772-22375892 8.86e-01 120 chr2R:7463330-7463450 6.28e-01 120 chr3R:30946515-30946635 5.59e-01 120 chr2R:14432379-14432499 2.57e-02 120 chr3R:10885434-10885554 9.36e-05 51_[+1(8.78e-05)]_10_[+2(1.17e-05)]_\ 43 chr3R:10407259-10407379 1.94e-02 76_[+3(3.22e-05)]_28_[+3(3.22e-05)] chr3L:17465833-17465953 2.28e-01 105_[+4(8.16e-05)]_7 chr3L:4262469-4262589 9.67e-03 46_[+3(8.52e-05)]_66 chr3R:9740768-9740888 1.34e-01 70_[+3(8.52e-05)]_13_[+3(6.56e-05)]_\ 21 chr2R:17865980-17866100 7.40e-01 120 chr3R:18226271-18226391 8.04e-01 120 chr3L:18872630-18872750 9.71e-01 120 chr3L:20495270-20495390 1.62e-02 120 chr3R:24527925-24528045 4.26e-02 70_[+5(7.38e-06)]_42 chr3R:8824252-8824372 8.28e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************