******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/topi.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:8763905-8764025 1.0000 120 chr3R:29763922-29764042 1.0000 120 chr2R:18610479-18610599 1.0000 120 chr2L:4180060-4180180 1.0000 120 chrX:3147143-3147263 1.0000 120 chr3L:10359542-10359662 1.0000 120 chrX:2796729-2796849 1.0000 120 chrX:4435385-4435505 1.0000 120 chrX:17875347-17875467 1.0000 120 chrX:2788711-2788831 1.0000 120 chr3R:26192404-26192524 1.0000 120 chr3L:8368803-8368923 1.0000 120 chr2L:11871024-11871144 1.0000 120 chrX:13541324-13541444 1.0000 120 chr3L:1265128-1265248 1.0000 120 chr3R:22424146-22424266 1.0000 120 chrX:3437617-3437737 1.0000 120 chr2R:18308307-18308427 1.0000 120 chr2R:19187341-19187461 1.0000 120 chrX:17172253-17172373 1.0000 120 chrX:6030135-6030255 1.0000 120 chr3R:30843876-30843996 1.0000 120 chr2L:650995-651115 1.0000 120 chr3L:18193819-18193939 1.0000 120 chr3R:14917969-14918089 1.0000 120 chr2R:10580622-10580742 1.0000 120 chr3L:3778603-3778723 1.0000 120 chr2R:11069109-11069229 1.0000 120 chr3R:21827586-21827706 1.0000 120 chr2R:10599131-10599251 1.0000 120 chrX:20509641-20509761 1.0000 120 chr3L:14453336-14453456 1.0000 120 chr2R:14975300-14975420 1.0000 120 chr3L:3074503-3074623 1.0000 120 chr2L:18466387-18466507 1.0000 120 chr3R:4961579-4961699 1.0000 120 chrX:6574622-6574742 1.0000 120 chr3R:31308986-31309106 1.0000 120 chr2R:23433962-23434082 1.0000 120 chr3R:8968977-8969097 1.0000 120 chr3R:16985688-16985808 1.0000 120 chr3L:12725876-12725996 1.0000 120 chr3R:17202450-17202570 1.0000 120 chr3R:20001662-20001782 1.0000 120 chr3R:29762496-29762616 1.0000 120 chr3L:16019316-16019436 1.0000 120 chr2R:7909615-7909735 1.0000 120 chrX:5026816-5026936 1.0000 120 chr3L:1408251-1408371 1.0000 120 chrX:13221425-13221545 1.0000 120 chr3L:10928852-10928972 1.0000 120 chr3L:761837-761957 1.0000 120 chr3R:29291016-29291136 1.0000 120 chr2L:4567323-4567443 1.0000 120 chrX:17760657-17760777 1.0000 120 chrX:7537953-7538073 1.0000 120 chr3L:13410191-13410311 1.0000 120 chrX:1897535-1897655 1.0000 120 chr3L:11382780-11382900 1.0000 120 chr3L:3612721-3612841 1.0000 120 chr3L:8716125-8716245 1.0000 120 chrX:15552533-15552653 1.0000 120 chr3L:16183248-16183368 1.0000 120 chr3R:21648652-21648772 1.0000 120 chrX:18834517-18834637 1.0000 120 chr2R:18312711-18312831 1.0000 120 chr3L:2838284-2838404 1.0000 120 chrX:5025458-5025578 1.0000 120 chr2L:1486396-1486516 1.0000 120 chrX:14750583-14750703 1.0000 120 chr3R:9913558-9913678 1.0000 120 chrX:3060203-3060323 1.0000 120 chrX:7541591-7541711 1.0000 120 chr3L:19696502-19696622 1.0000 120 chr3R:13793455-13793575 1.0000 120 chr2L:16843422-16843542 1.0000 120 chr2R:24541096-24541216 1.0000 120 chr2R:23225217-23225337 1.0000 120 chr3R:18157575-18157695 1.0000 120 chrX:17550479-17550599 1.0000 120 chr3L:6270411-6270531 1.0000 120 chr3L:18241080-18241200 1.0000 120 chr2L:5393435-5393555 1.0000 120 chrX:17545700-17545820 1.0000 120 chr3R:30689806-30689926 1.0000 120 chr2R:22144251-22144371 1.0000 120 chr2L:11966210-11966330 1.0000 120 chr2L:14248006-14248126 1.0000 120 chr2L:5231617-5231737 1.0000 120 chr3L:5630236-5630356 1.0000 120 chrX:2452869-2452989 1.0000 120 chrX:10104626-10104746 1.0000 120 chr3L:388291-388411 1.0000 120 chr2R:16685699-16685819 1.0000 120 chr3R:27593359-27593479 1.0000 120 chr2L:19905341-19905461 1.0000 120 chrX:7978213-7978333 1.0000 120 chrX:17814929-17815049 1.0000 120 chrX:22479518-22479638 1.0000 120 chr3L:785868-785988 1.0000 120 chr3R:4884037-4884157 1.0000 120 chr3R:29778208-29778328 1.0000 120 chr2L:15459075-15459195 1.0000 120 chr3R:29538583-29538703 1.0000 120 chr3R:31688817-31688937 1.0000 120 chr2R:20136837-20136957 1.0000 120 chrX:13568316-13568436 1.0000 120 chr2L:7619378-7619498 1.0000 120 chr3R:8272749-8272869 1.0000 120 chr3R:16501531-16501651 1.0000 120 chrX:7558783-7558903 1.0000 120 chr3R:23504888-23505008 1.0000 120 chr2L:8229720-8229840 1.0000 120 chr3L:2411045-2411165 1.0000 120 chr3L:16489939-16490059 1.0000 120 chr2L:9990264-9990384 1.0000 120 chr2L:17782107-17782227 1.0000 120 chr2R:19615986-19616106 1.0000 120 chr3R:20283326-20283446 1.0000 120 chr3R:16210893-16211013 1.0000 120 chr2R:10237743-10237863 1.0000 120 chrX:7892617-7892737 1.0000 120 chr3R:31956403-31956523 1.0000 120 chrX:5026160-5026280 1.0000 120 chr3R:8116038-8116158 1.0000 120 chr2L:9981946-9982066 1.0000 120 chr2R:10772019-10772139 1.0000 120 chr3R:8029735-8029855 1.0000 120 chr2L:15275949-15276069 1.0000 120 chr3R:10530725-10530845 1.0000 120 chrX:12507707-12507827 1.0000 120 chr2L:634343-634463 1.0000 120 chr2L:9438372-9438492 1.0000 120 chr2R:23022639-23022759 1.0000 120 chr2L:3554042-3554162 1.0000 120 chr3R:18742484-18742604 1.0000 120 chrX:17678058-17678178 1.0000 120 chrX:11550185-11550305 1.0000 120 chr3L:18198849-18198969 1.0000 120 chr3L:10786072-10786192 1.0000 120 chrX:1320518-1320638 1.0000 120 chr3L:14350268-14350388 1.0000 120 chrX:13278196-13278316 1.0000 120 chr3R:27140067-27140187 1.0000 120 chr3R:13941523-13941643 1.0000 120 chr3R:23148524-23148644 1.0000 120 chrX:12596547-12596667 1.0000 120 chr3R:22628043-22628163 1.0000 120 chr3R:18787358-18787478 1.0000 120 chr3L:7792364-7792484 1.0000 120 chr3L:3513187-3513307 1.0000 120 chr3L:20403669-20403789 1.0000 120 chrX:6022258-6022378 1.0000 120 chr3L:21099277-21099397 1.0000 120 chr3R:29757870-29757990 1.0000 120 chr2R:15842691-15842811 1.0000 120 chr2L:7909364-7909484 1.0000 120 chr3L:9419469-9419589 1.0000 120 chr3L:15762937-15763057 1.0000 120 chr3L:8157198-8157318 1.0000 120 chr3R:22194885-22195005 1.0000 120 chr3L:3246865-3246985 1.0000 120 chrX:21044591-21044711 1.0000 120 chr3R:8142247-8142367 1.0000 120 chr3L:1087434-1087554 1.0000 120 chrX:12015152-12015272 1.0000 120 chr2L:15386887-15387007 1.0000 120 chr3R:15588658-15588778 1.0000 120 chr2L:20802339-20802459 1.0000 120 chr2R:10600517-10600637 1.0000 120 chr2L:11222200-11222320 1.0000 120 chr3R:31505411-31505531 1.0000 120 chr2L:5483206-5483326 1.0000 120 chr3L:8371030-8371150 1.0000 120 chrX:5044563-5044683 1.0000 120 chr2R:14513679-14513799 1.0000 120 chr2L:8855636-8855756 1.0000 120 chrX:8667860-8667980 1.0000 120 chr2R:19171727-19171847 1.0000 120 chr2L:17749121-17749241 1.0000 120 chr3L:21060580-21060700 1.0000 120 chrX:779514-779634 1.0000 120 chr3R:11888381-11888501 1.0000 120 chrX:2365558-2365678 1.0000 120 chr2R:19647743-19647863 1.0000 120 chrX:9656418-9656538 1.0000 120 chr2R:19849257-19849377 1.0000 120 chr3R:21887660-21887780 1.0000 120 chr3L:14253558-14253678 1.0000 120 chr3L:6359339-6359459 1.0000 120 chr3L:1458152-1458272 1.0000 120 chrX:9892968-9893088 1.0000 120 chr3R:30280470-30280590 1.0000 120 chr3L:3078557-3078677 1.0000 120 chrX:13312325-13312445 1.0000 120 chr3L:7113150-7113270 1.0000 120 chr2L:382914-383034 1.0000 120 chr3R:9768403-9768523 1.0000 120 chr2L:7897373-7897493 1.0000 120 chr2R:6556929-6557049 1.0000 120 chr2L:11968695-11968815 1.0000 120 chrX:8244404-8244524 1.0000 120 chr2L:675040-675160 1.0000 120 chr3L:14083391-14083511 1.0000 120 chr3L:16974713-16974833 1.0000 120 chr2R:10213571-10213691 1.0000 120 chr2R:16156386-16156506 1.0000 120 chr3R:13934743-13934863 1.0000 120 chr3L:817863-817983 1.0000 120 chrX:17490005-17490125 1.0000 120 chr3L:5365253-5365373 1.0000 120 chrX:12000351-12000471 1.0000 120 chr3R:14684094-14684214 1.0000 120 chr3R:27171242-27171362 1.0000 120 chr2R:16812910-16813030 1.0000 120 chrX:17571063-17571183 1.0000 120 chrX:3289480-3289600 1.0000 120 chr3L:2549080-2549200 1.0000 120 chr3R:15596096-15596216 1.0000 120 chr3R:29786568-29786688 1.0000 120 chr3L:10793996-10794116 1.0000 120 chr2R:6994756-6994876 1.0000 120 chr3L:21253110-21253230 1.0000 120 chrX:14897750-14897870 1.0000 120 chr2R:8195136-8195256 1.0000 120 chr3R:11947223-11947343 1.0000 120 chr2R:12013416-12013536 1.0000 120 chr2R:7092979-7093099 1.0000 120 chr3L:11297618-11297738 1.0000 120 chr2L:10791460-10791580 1.0000 120 chr3L:17608708-17608828 1.0000 120 chr2R:9674762-9674882 1.0000 120 chr3R:23486892-23487012 1.0000 120 chr2L:423277-423397 1.0000 120 chr2L:19162875-19162995 1.0000 120 chr2L:20956950-20957070 1.0000 120 chr2L:7992121-7992241 1.0000 120 chr3L:6220338-6220458 1.0000 120 chr2R:13461351-13461471 1.0000 120 chr2L:15304522-15304642 1.0000 120 chr3R:28633924-28634044 1.0000 120 chr2L:4056877-4056997 1.0000 120 chr3L:14055359-14055479 1.0000 120 chr2R:24955756-24955876 1.0000 120 chrX:13630412-13630532 1.0000 120 chrX:3381127-3381247 1.0000 120 chr3R:4667405-4667525 1.0000 120 chr2R:17836080-17836200 1.0000 120 chr3L:21011356-21011476 1.0000 120 chrX:17879367-17879487 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_topi/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/topi.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.35 C 0.152 G 0.149 T 0.349 Background letter frequencies (from file dataset with add-one prior applied): A 0.35 C 0.152 G 0.149 T 0.349 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGYGGCGC MEME-1 width = 8 sites = 2 llr = 28 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::5::a:a probability G aa:aa:a: matrix T ::5::::: bits 2.7 ** ***** 2.5 ** ***** 2.2 ** ***** 1.9 ** ***** Relative 1.6 ** ***** Entropy 1.4 ** ***** (20.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6030135-6030255 47 2.58e-07 AATCGAATAA GGCGGCGC GTCAATGATG chr3R:23148524-23148644 74 8.50e-07 CCATGATGAT GGTGGCGC GGGTCGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6030135-6030255 2.6e-07 46_[+1]_66 chr3R:23148524-23148644 8.5e-07 73_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYGGCGC width=8 seqs=2 chrX:6030135-6030255 ( 47) GGCGGCGC 1 chr3R:23148524-23148644 ( 74) GGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.9e+003 -765 -765 274 -765 -765 -765 274 -765 -765 171 -765 52 -765 -765 274 -765 -765 -765 274 -765 -765 271 -765 -765 -765 -765 274 -765 -765 271 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- GG[CT]GGCGC -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAGAGG MEME-2 width = 8 sites = 2 llr = 27 E-value = 9.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C :::::::: probability G aaa:a:aa matrix T :::::::: bits 2.7 *** * ** 2.5 *** * ** 2.2 *** * ** 1.9 *** * ** Relative 1.6 ******** Entropy 1.4 ******** (19.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22144251-22144371 107 1.34e-06 TGCTTCAGAT GGGAGAGG AGAATA chrX:7537953-7538073 55 1.34e-06 AAGTGTGGAC GGGAGAGG CATGCTAAGt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22144251-22144371 1.3e-06 106_[+2]_6 chrX:7537953-7538073 1.3e-06 54_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAGAGG width=8 seqs=2 chr2R:22144251-22144371 ( 107) GGGAGAGG 1 chrX:7537953-7538073 ( 55) GGGAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.1e+003 -765 -765 274 -765 -765 -765 274 -765 -765 -765 274 -765 151 -765 -765 -765 -765 -765 274 -765 151 -765 -765 -765 -765 -765 274 -765 -765 -765 274 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAGAGG MEME-2 regular expression -------------------------------------------------------------------------------- GGGAGAGG -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGSCAM MEME-3 width = 8 sites = 17 llr = 162 E-value = 7.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::84 pos.-specific C :1::68:6 probability G 2:aa422: matrix T 89:::::: bits 2.7 ** 2.5 ** 2.2 ** 1.9 **** Relative 1.6 **** Entropy 1.4 ***** * (13.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGGCCAC consensus G GGGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5044563-5044683 20 3.32e-06 TTCAAATGGT TTGGCCAC GAAAATGTAT chr3L:3078557-3078677 62 6.16e-06 ATAAAAGCAT TTGGCCGC TTAGTTTTCA chrX:8667860-8667980 58 6.16e-06 TTCACATCGA TTGGCCGC ATAATCTGCT chrX:17760657-17760777 27 6.16e-06 GTCAAGTGCT GTGGCCAC AACAATGTTT chr3R:10530725-10530845 86 1.28e-05 AGATCCATCG TTGGGCGC TATTTATTCG chr2L:9438372-9438492 13 2.37e-05 ACCCGTGGGA TTGGCGAC ACTCTTATAG chr2L:7619378-7619498 23 2.37e-05 TCTATAAGTC TTGGCCAA CAATCACGAT chr2R:20136837-20136957 80 2.37e-05 AACCATTATC TTGGCCAA AGTGCAGTGA chr3R:29762496-29762616 52 2.37e-05 TGGGCTGAGC TTGGCCAA TCCTATAGTT chr3L:8368803-8368923 93 2.37e-05 TCATCACTGA TTGGCGAC TAGAAGGAGG chrX:8244404-8244524 57 2.43e-05 CGCCATCGTT GTGGGCGC CAAAAAGAGC chr3R:4884037-4884157 24 4.43e-05 TGTGTCATAT TTGGGCAA AAGAAAGGTA chr2R:23225217-23225337 69 4.43e-05 CATTTAATAT TTGGGGAC TTAAAATTGA chrX:3437617-3437737 48 4.43e-05 GCCTTAACAG TTGGGCAA TATAATCTTC chrX:1320518-1320638 11 4.77e-05 CTTATTGGAC TCGGCCAC AAGGATTCTG chr3R:20001662-20001782 110 5.69e-05 tggccaaaaa gtgggcaa acg chr2R:24955756-24955876 93 7.56e-05 TGTAAGTCAG GTGGCGAA CCTGAAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5044563-5044683 3.3e-06 19_[+3]_93 chr3L:3078557-3078677 6.2e-06 61_[+3]_51 chrX:8667860-8667980 6.2e-06 57_[+3]_55 chrX:17760657-17760777 6.2e-06 26_[+3]_86 chr3R:10530725-10530845 1.3e-05 85_[+3]_27 chr2L:9438372-9438492 2.4e-05 12_[+3]_100 chr2L:7619378-7619498 2.4e-05 22_[+3]_90 chr2R:20136837-20136957 2.4e-05 79_[+3]_33 chr3R:29762496-29762616 2.4e-05 51_[+3]_61 chr3L:8368803-8368923 2.4e-05 92_[+3]_20 chrX:8244404-8244524 2.4e-05 56_[+3]_56 chr3R:4884037-4884157 4.4e-05 23_[+3]_89 chr2R:23225217-23225337 4.4e-05 68_[+3]_44 chrX:3437617-3437737 4.4e-05 47_[+3]_65 chrX:1320518-1320638 4.8e-05 10_[+3]_102 chr3R:20001662-20001782 5.7e-05 109_[+3]_3 chr2R:24955756-24955876 7.6e-05 92_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGSCAM width=8 seqs=17 chrX:5044563-5044683 ( 20) TTGGCCAC 1 chr3L:3078557-3078677 ( 62) TTGGCCGC 1 chrX:8667860-8667980 ( 58) TTGGCCGC 1 chrX:17760657-17760777 ( 27) GTGGCCAC 1 chr3R:10530725-10530845 ( 86) TTGGGCGC 1 chr2L:9438372-9438492 ( 13) TTGGCGAC 1 chr2L:7619378-7619498 ( 23) TTGGCCAA 1 chr2R:20136837-20136957 ( 80) TTGGCCAA 1 chr3R:29762496-29762616 ( 52) TTGGCCAA 1 chr3L:8368803-8368923 ( 93) TTGGCGAC 1 chrX:8244404-8244524 ( 57) GTGGGCGC 1 chr3R:4884037-4884157 ( 24) TTGGGCAA 1 chr2R:23225217-23225337 ( 69) TTGGGGAC 1 chrX:3437617-3437737 ( 48) TTGGGCAA 1 chrX:1320518-1320638 ( 11) TCGGCCAC 1 chr3R:20001662-20001782 ( 110) GTGGGCAA 1 chr2R:24955756-24955876 ( 93) GTGGCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 7.1e+004 -1073 -1073 65 113 -1073 -137 -1073 143 -1073 -1073 274 -1073 -1073 -1073 274 -1073 -1073 209 124 -1073 -1073 233 65 -1073 113 -1073 65 -1073 24 195 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.1e+004 0.000000 0.000000 0.235294 0.764706 0.000000 0.058824 0.000000 0.941176 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.647059 0.352941 0.000000 0.000000 0.764706 0.235294 0.000000 0.764706 0.000000 0.235294 0.000000 0.411765 0.588235 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGSCAM MEME-3 regular expression -------------------------------------------------------------------------------- [TG]TGG[CG][CG][AG][CA] -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGTGCAS MEME-4 width = 8 sites = 9 llr = 97 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::9: pos.-specific C 6::::a:6 probability G 4:a1a:14 matrix T :::9:::: bits 2.7 * ** 2.5 * ** 2.2 * ** 1.9 * ** Relative 1.6 *** ** * Entropy 1.4 *** ** * (15.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18742484-18742604 100 3.33e-06 CCAATTTTTG CAGTGCAC CTGTGCAGAA chrX:21044591-21044711 102 9.87e-06 CATTTATTTT CAGTGCAG GAAATCGCAG chrX:20509641-20509761 60 9.87e-06 AAGTAGAAAG GAGTGCAC TCTTTTACTT chr3L:18193819-18193939 74 9.87e-06 ACCTTTTGAG CAGTGCAG GGTACAAAAT chrX:17875347-17875467 113 9.87e-06 CTTTGTTTCG GAGTGCAC chr2R:12013416-12013536 27 1.31e-05 AGCATTTACA GAGTGCAG CAGTTACTAT chrX:3147143-3147263 19 1.31e-05 AAAGCGTTAT GAGTGCAG CTTTAAACCA chr2R:10600517-10600637 86 1.59e-05 ACTGTATGGT CAGGGCAC ATACTTTCCT chr3R:16985688-16985808 98 1.59e-05 ATAAATAAGT CAGTGCGC CCCGCTGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18742484-18742604 3.3e-06 99_[+4]_13 chrX:21044591-21044711 9.9e-06 101_[+4]_11 chrX:20509641-20509761 9.9e-06 59_[+4]_53 chr3L:18193819-18193939 9.9e-06 73_[+4]_39 chrX:17875347-17875467 9.9e-06 112_[+4] chr2R:12013416-12013536 1.3e-05 26_[+4]_86 chrX:3147143-3147263 1.3e-05 18_[+4]_94 chr2R:10600517-10600637 1.6e-05 85_[+4]_27 chr3R:16985688-16985808 1.6e-05 97_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGTGCAS width=8 seqs=9 chr3R:18742484-18742604 ( 100) CAGTGCAC 1 chrX:21044591-21044711 ( 102) CAGTGCAG 1 chrX:20509641-20509761 ( 60) GAGTGCAC 1 chr3L:18193819-18193939 ( 74) CAGTGCAG 1 chrX:17875347-17875467 ( 113) GAGTGCAC 1 chr2R:12013416-12013536 ( 27) GAGTGCAG 1 chrX:3147143-3147263 ( 19) GAGTGCAG 1 chr2R:10600517-10600637 ( 86) CAGGGCAC 1 chr3R:16985688-16985808 ( 98) CAGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 2.4e+004 -982 187 157 -982 151 -982 -982 -982 -982 -982 274 -982 -982 -982 -43 135 -982 -982 274 -982 -982 272 -982 -982 134 -982 -43 -982 -982 187 157 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.4e+004 0.000000 0.555556 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.555556 0.444444 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGTGCAS MEME-4 regular expression -------------------------------------------------------------------------------- [CG]AGTGCA[CG] -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCCAGS MEME-5 width = 8 sites = 3 llr = 38 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::a:: pos.-specific C :::aa::7 probability G a:a:::a3 matrix T :::::::: bits 2.7 * *** * 2.5 * *** * 2.2 * *** * 1.9 * *** ** Relative 1.6 ******** Entropy 1.4 ******** (18.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAGCCAGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27593359-27593479 113 1.42e-06 GAAACCTGCA GAGCCAGC chr2L:4180060-4180180 4 1.42e-06 AGG GAGCCAGC CAAGAGATAG chrX:2365558-2365678 79 2.82e-06 AAACTCTATT GAGCCAGG ATATATTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27593359-27593479 1.4e-06 112_[+5] chr2L:4180060-4180180 1.4e-06 3_[+5]_109 chrX:2365558-2365678 2.8e-06 78_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCCAGS width=8 seqs=3 chr3R:27593359-27593479 ( 113) GAGCCAGC 1 chr2L:4180060-4180180 ( 4) GAGCCAGC 1 chrX:2365558-2365678 ( 79) GAGCCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.8e+004 -823 -823 274 -823 151 -823 -823 -823 -823 -823 274 -823 -823 271 -823 -823 -823 271 -823 -823 151 -823 -823 -823 -823 -823 274 -823 -823 213 115 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.8e+004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCCAGS MEME-5 regular expression -------------------------------------------------------------------------------- GAGCCAG[CG] -------------------------------------------------------------------------------- Time 32.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8763905-8764025 6.63e-01 120 chr3R:29763922-29764042 8.20e-01 120 chr2R:18610479-18610599 9.98e-01 120 chr2L:4180060-4180180 1.08e-03 3_[+5(1.42e-06)]_109 chrX:3147143-3147263 8.97e-02 18_[+4(1.31e-05)]_94 chr3L:10359542-10359662 7.98e-02 120 chrX:2796729-2796849 7.90e-01 120 chrX:4435385-4435505 8.39e-01 120 chrX:17875347-17875467 1.21e-02 112_[+4(9.87e-06)] chrX:2788711-2788831 5.58e-01 120 chr3R:26192404-26192524 2.89e-01 120 chr3L:8368803-8368923 2.82e-04 92_[+3(2.37e-05)]_11_[+1(6.91e-05)]_\ 1 chr2L:11871024-11871144 9.99e-01 120 chrX:13541324-13541444 5.04e-01 120 chr3L:1265128-1265248 5.88e-02 120 chr3R:22424146-22424266 9.63e-01 120 chrX:3437617-3437737 1.66e-01 47_[+3(4.43e-05)]_65 chr2R:18308307-18308427 4.63e-01 120 chr2R:19187341-19187461 9.56e-01 120 chrX:17172253-17172373 3.92e-01 120 chrX:6030135-6030255 6.97e-04 46_[+1(2.58e-07)]_66 chr3R:30843876-30843996 3.68e-01 120 chr2L:650995-651115 3.69e-02 120 chr3L:18193819-18193939 1.94e-02 73_[+4(9.87e-06)]_39 chr3R:14917969-14918089 7.58e-01 120 chr2R:10580622-10580742 4.67e-01 120 chr3L:3778603-3778723 9.20e-01 120 chr2R:11069109-11069229 9.91e-01 120 chr3R:21827586-21827706 9.63e-01 120 chr2R:10599131-10599251 2.89e-01 120 chrX:20509641-20509761 4.81e-02 59_[+4(9.87e-06)]_53 chr3L:14453336-14453456 8.87e-01 120 chr2R:14975300-14975420 1.00e+00 120 chr3L:3074503-3074623 5.46e-01 120 chr2L:18466387-18466507 7.70e-01 120 chr3R:4961579-4961699 8.84e-01 120 chrX:6574622-6574742 3.16e-01 120 chr3R:31308986-31309106 6.82e-01 120 chr2R:23433962-23434082 6.68e-02 120 chr3R:8968977-8969097 1.00e+00 120 chr3R:16985688-16985808 7.07e-03 97_[+4(1.59e-05)]_15 chr3L:12725876-12725996 1.00e+00 120 chr3R:17202450-17202570 8.66e-01 120 chr3R:20001662-20001782 2.95e-02 109_[+3(5.69e-05)]_3 chr3R:29762496-29762616 2.57e-03 51_[+3(2.37e-05)]_61 chr3L:16019316-16019436 9.67e-01 120 chr2R:7909615-7909735 6.11e-01 120 chrX:5026816-5026936 1.00e+00 120 chr3L:1408251-1408371 3.07e-01 120 chrX:13221425-13221545 6.83e-02 120 chr3L:10928852-10928972 5.43e-01 120 chr3L:761837-761957 3.67e-01 120 chr3R:29291016-29291136 8.37e-01 120 chr2L:4567323-4567443 8.81e-01 120 chrX:17760657-17760777 8.10e-03 26_[+3(6.16e-06)]_86 chrX:7537953-7538073 3.36e-04 54_[+2(1.34e-06)]_58 chr3L:13410191-13410311 8.57e-01 120 chrX:1897535-1897655 1.82e-01 120 chr3L:11382780-11382900 2.75e-01 120 chr3L:3612721-3612841 8.80e-01 120 chr3L:8716125-8716245 9.00e-01 120 chrX:15552533-15552653 9.74e-01 120 chr3L:16183248-16183368 6.96e-01 120 chr3R:21648652-21648772 6.81e-01 120 chrX:18834517-18834637 7.13e-01 120 chr2R:18312711-18312831 9.53e-01 120 chr3L:2838284-2838404 7.80e-01 120 chrX:5025458-5025578 4.53e-01 120 chr2L:1486396-1486516 2.53e-01 120 chrX:14750583-14750703 9.84e-01 120 chr3R:9913558-9913678 2.91e-01 120 chrX:3060203-3060323 2.41e-01 120 chrX:7541591-7541711 7.44e-01 120 chr3L:19696502-19696622 4.08e-02 120 chr3R:13793455-13793575 1.00e+00 120 chr2L:16843422-16843542 4.19e-01 120 chr2R:24541096-24541216 6.85e-01 120 chr2R:23225217-23225337 6.31e-03 68_[+3(4.43e-05)]_44 chr3R:18157575-18157695 7.03e-01 120 chrX:17550479-17550599 8.44e-01 120 chr3L:6270411-6270531 6.80e-01 120 chr3L:18241080-18241200 7.99e-01 120 chr2L:5393435-5393555 9.80e-01 120 chrX:17545700-17545820 8.96e-01 120 chr3R:30689806-30689926 7.81e-01 120 chr2R:22144251-22144371 8.45e-06 106_[+2(1.34e-06)]_6 chr2L:11966210-11966330 7.98e-01 120 chr2L:14248006-14248126 9.96e-01 120 chr2L:5231617-5231737 3.72e-01 120 chr3L:5630236-5630356 8.13e-01 120 chrX:2452869-2452989 1.55e-01 120 chrX:10104626-10104746 9.63e-01 120 chr3L:388291-388411 6.24e-01 120 chr2R:16685699-16685819 9.75e-02 120 chr3R:27593359-27593479 1.74e-04 70_[+4(4.23e-05)]_34_[+5(1.42e-06)] chr2L:19905341-19905461 2.61e-01 120 chrX:7978213-7978333 9.65e-01 120 chrX:17814929-17815049 1.00e+00 120 chrX:22479518-22479638 9.65e-01 120 chr3L:785868-785988 7.27e-01 120 chr3R:4884037-4884157 1.32e-02 23_[+3(4.43e-05)]_89 chr3R:29778208-29778328 9.39e-01 120 chr2L:15459075-15459195 4.32e-01 69_[+5(9.96e-05)]_43 chr3R:29538583-29538703 9.79e-01 120 chr3R:31688817-31688937 9.78e-01 120 chr2R:20136837-20136957 7.06e-03 79_[+3(2.37e-05)]_33 chrX:13568316-13568436 2.61e-01 120 chr2L:7619378-7619498 3.52e-02 22_[+3(2.37e-05)]_90 chr3R:8272749-8272869 4.50e-01 120 chr3R:16501531-16501651 8.53e-01 120 chrX:7558783-7558903 9.66e-01 120 chr3R:23504888-23505008 7.06e-01 120 chr2L:8229720-8229840 9.85e-01 120 chr3L:2411045-2411165 9.19e-01 120 chr3L:16489939-16490059 7.66e-01 120 chr2L:9990264-9990384 8.80e-01 120 chr2L:17782107-17782227 1.00e+00 120 chr2R:19615986-19616106 2.21e-02 83_[+4(6.11e-05)]_29 chr3R:20283326-20283446 8.19e-02 120 chr3R:16210893-16211013 9.53e-02 36_[+5(1.98e-05)]_76 chr2R:10237743-10237863 9.99e-01 120 chrX:7892617-7892737 9.49e-01 120 chr3R:31956403-31956523 8.09e-01 120 chrX:5026160-5026280 8.43e-01 120 chr3R:8116038-8116158 4.90e-01 120 chr2L:9981946-9982066 5.55e-01 120 chr2R:10772019-10772139 7.35e-01 120 chr3R:8029735-8029855 9.83e-01 120 chr2L:15275949-15276069 5.65e-01 120 chr3R:10530725-10530845 3.84e-03 85_[+3(1.28e-05)]_27 chrX:12507707-12507827 8.43e-01 120 chr2L:634343-634463 1.57e-01 120 chr2L:9438372-9438492 3.76e-04 12_[+3(2.37e-05)]_100 chr2R:23022639-23022759 6.51e-01 120 chr2L:3554042-3554162 5.35e-01 120 chr3R:18742484-18742604 2.11e-02 99_[+4(3.33e-06)]_[+4(7.32e-05)]_5 chrX:17678058-17678178 7.55e-01 120 chrX:11550185-11550305 9.97e-01 120 chr3L:18198849-18198969 8.93e-01 120 chr3L:10786072-10786192 9.95e-01 120 chrX:1320518-1320638 7.06e-03 10_[+3(4.77e-05)]_102 chr3L:14350268-14350388 2.22e-01 120 chrX:13278196-13278316 3.66e-01 120 chr3R:27140067-27140187 6.55e-01 120 chr3R:13941523-13941643 5.04e-01 120 chr3R:23148524-23148644 1.40e-05 73_[+1(8.50e-07)]_39 chrX:12596547-12596667 9.09e-01 120 chr3R:22628043-22628163 9.98e-01 120 chr3R:18787358-18787478 6.14e-01 120 chr3L:7792364-7792484 6.34e-02 120 chr3L:3513187-3513307 7.24e-01 120 chr3L:20403669-20403789 5.69e-01 120 chrX:6022258-6022378 1.30e-01 120 chr3L:21099277-21099397 8.95e-01 120 chr3R:29757870-29757990 7.86e-01 120 chr2R:15842691-15842811 9.87e-01 120 chr2L:7909364-7909484 9.96e-01 120 chr3L:9419469-9419589 2.52e-01 120 chr3L:15762937-15763057 8.90e-01 120 chr3L:8157198-8157318 8.28e-01 120 chr3R:22194885-22195005 9.99e-01 120 chr3L:3246865-3246985 9.56e-01 120 chrX:21044591-21044711 3.67e-02 101_[+4(9.87e-06)]_11 chr3R:8142247-8142367 3.36e-01 120 chr3L:1087434-1087554 8.55e-01 120 chrX:12015152-12015272 8.56e-01 120 chr2L:15386887-15387007 9.97e-01 120 chr3R:15588658-15588778 9.87e-01 120 chr2L:20802339-20802459 4.76e-02 120 chr2R:10600517-10600637 2.03e-02 85_[+4(1.59e-05)]_27 chr2L:11222200-11222320 8.88e-01 120 chr3R:31505411-31505531 4.81e-01 120 chr2L:5483206-5483326 3.03e-02 16_[+2(5.23e-05)]_96 chr3L:8371030-8371150 5.15e-01 120 chrX:5044563-5044683 2.32e-02 19_[+3(3.32e-06)]_93 chr2R:14513679-14513799 1.71e-01 120 chr2L:8855636-8855756 3.14e-01 120 chrX:8667860-8667980 8.73e-03 57_[+3(6.16e-06)]_55 chr2R:19171727-19171847 4.95e-01 120 chr2L:17749121-17749241 4.24e-01 120 chr3L:21060580-21060700 9.26e-01 120 chrX:779514-779634 9.06e-01 120 chr3R:11888381-11888501 4.25e-01 120 chrX:2365558-2365678 1.79e-02 78_[+5(2.82e-06)]_34 chr2R:19647743-19647863 8.99e-01 120 chrX:9656418-9656538 2.43e-01 120 chr2R:19849257-19849377 8.50e-01 120 chr3R:21887660-21887780 4.21e-01 120 chr3L:14253558-14253678 9.01e-01 120 chr3L:6359339-6359459 8.90e-01 120 chr3L:1458152-1458272 1.65e-01 120 chrX:9892968-9893088 8.09e-01 120 chr3R:30280470-30280590 7.13e-01 120 chr3L:3078557-3078677 5.42e-02 61_[+3(6.16e-06)]_51 chrX:13312325-13312445 2.96e-01 120 chr3L:7113150-7113270 9.88e-01 120 chr2L:382914-383034 1.00e+00 120 chr3R:9768403-9768523 9.17e-03 84_[+5(1.98e-05)]_28 chr2L:7897373-7897493 8.30e-01 120 chr2R:6556929-6557049 7.67e-01 120 chr2L:11968695-11968815 7.13e-01 120 chrX:8244404-8244524 1.57e-04 56_[+3(2.43e-05)]_56 chr2L:675040-675160 3.10e-01 120 chr3L:14083391-14083511 1.85e-01 120 chr3L:16974713-16974833 8.81e-01 120 chr2R:10213571-10213691 1.41e-01 120 chr2R:16156386-16156506 2.46e-01 120 chr3R:13934743-13934863 2.75e-01 120 chr3L:817863-817983 9.73e-01 120 chrX:17490005-17490125 8.19e-01 120 chr3L:5365253-5365373 9.99e-01 120 chrX:12000351-12000471 5.29e-01 120 chr3R:14684094-14684214 9.85e-01 120 chr3R:27171242-27171362 9.21e-01 120 chr2R:16812910-16813030 8.41e-01 120 chrX:17571063-17571183 1.83e-01 120 chrX:3289480-3289600 7.01e-02 120 chr3L:2549080-2549200 4.75e-01 120 chr3R:15596096-15596216 9.18e-01 120 chr3R:29786568-29786688 1.21e-01 120 chr3L:10793996-10794116 7.42e-01 120 chr2R:6994756-6994876 4.70e-01 120 chr3L:21253110-21253230 9.43e-01 120 chrX:14897750-14897870 4.42e-01 120 chr2R:8195136-8195256 4.50e-01 120 chr3R:11947223-11947343 3.99e-01 120 chr2R:12013416-12013536 4.36e-02 26_[+4(1.31e-05)]_86 chr2R:7092979-7093099 6.05e-01 120 chr3L:11297618-11297738 2.69e-01 120 chr2L:10791460-10791580 8.37e-01 120 chr3L:17608708-17608828 2.24e-01 120 chr2R:9674762-9674882 4.13e-01 120 chr3R:23486892-23487012 8.68e-01 120 chr2L:423277-423397 9.96e-01 120 chr2L:19162875-19162995 9.99e-01 120 chr2L:20956950-20957070 6.28e-01 120 chr2L:7992121-7992241 5.96e-01 120 chr3L:6220338-6220458 5.43e-02 120 chr2R:13461351-13461471 9.19e-01 120 chr2L:15304522-15304642 1.00e+00 120 chr3R:28633924-28634044 9.62e-01 120 chr2L:4056877-4056997 9.37e-01 120 chr3L:14055359-14055479 9.11e-01 120 chr2R:24955756-24955876 3.67e-03 91_[+1(3.55e-05)]_21 chrX:13630412-13630532 9.31e-01 120 chrX:3381127-3381247 6.86e-01 120 chr3R:4667405-4667525 1.32e-01 120 chr2R:17836080-17836200 9.96e-01 120 chr3L:21011356-21011476 7.29e-01 120 chrX:17879367-17879487 6.25e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************