******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/toe.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:18515692-18515812 1.0000 120 chr2L:16653675-16653795 1.0000 120 chr2L:93104-93224 1.0000 120 chr3L:10110451-10110571 1.0000 120 chr2R:12170633-12170753 1.0000 120 chr3R:5706006-5706126 1.0000 120 chr2R:15654536-15654656 1.0000 120 chr3L:21193314-21193434 1.0000 120 chr3R:8718570-8718690 1.0000 120 chr2L:20711531-20711651 1.0000 120 chr2R:21381316-21381436 1.0000 120 chr3R:5772238-5772358 1.0000 120 chr3R:4654993-4655113 1.0000 120 chr2R:8145517-8145637 1.0000 120 chr3R:28025358-28025478 1.0000 120 chr3L:12427270-12427390 1.0000 120 chr3L:4663993-4664113 1.0000 120 chr2R:15220330-15220450 1.0000 120 chrX:13933328-13933448 1.0000 120 chr3R:10086200-10086320 1.0000 120 chr3R:12817218-12817338 1.0000 120 chr3L:12074995-12075115 1.0000 120 chr2L:10514699-10514819 1.0000 120 chr3R:8354091-8354211 1.0000 120 chr2L:16672445-16672565 1.0000 120 chr2R:22912112-22912232 1.0000 120 chrX:10370984-10371104 1.0000 120 chr3L:8676630-8676750 1.0000 120 chr2L:20861246-20861366 1.0000 120 chr3R:19644949-19645069 1.0000 120 chr2L:13399749-13399869 1.0000 120 chr3R:9932074-9932194 1.0000 120 chr2L:125506-125626 1.0000 120 chr3L:12432757-12432877 1.0000 120 chr2L:5303059-5303179 1.0000 120 chr2R:12279265-12279385 1.0000 120 chr3L:7844180-7844300 1.0000 120 chr3R:26325183-26325303 1.0000 120 chr3L:8737873-8737993 1.0000 120 chr3R:15402740-15402860 1.0000 120 chr3L:17257344-17257464 1.0000 120 chr3R:18090064-18090184 1.0000 120 chr3R:5011187-5011307 1.0000 120 chr3R:8353295-8353415 1.0000 120 chr3R:26260995-26261115 1.0000 120 chr4:1029341-1029461 1.0000 120 chr3R:17287408-17287528 1.0000 120 chr3R:24264194-24264314 1.0000 120 chr3R:8562666-8562786 1.0000 120 chr2R:15412658-15412778 1.0000 120 chr3L:5640363-5640483 1.0000 120 chr3R:29905688-29905808 1.0000 120 chr3L:16977172-16977292 1.0000 120 chr2R:9607194-9607314 1.0000 120 chr3L:1612284-1612404 1.0000 120 chr3L:10756268-10756388 1.0000 120 chr3R:4685617-4685737 1.0000 120 chr2R:20526140-20526260 1.0000 120 chr2L:1982131-1982251 1.0000 120 chr2R:1515975-1516095 1.0000 120 chr3L:14204563-14204683 1.0000 120 chr2R:15143712-15143832 1.0000 120 chr3R:25312733-25312853 1.0000 120 chr3L:12434726-12434846 1.0000 120 chr2L:19433445-19433565 1.0000 120 chr2R:23672684-23672804 1.0000 120 chr3R:27662118-27662238 1.0000 120 chr3R:24149016-24149136 1.0000 120 chr2L:18797749-18797869 1.0000 120 chr3L:12049980-12050100 1.0000 120 chr3R:30282709-30282829 1.0000 120 chr3R:14070245-14070365 1.0000 120 chr2R:11205568-11205688 1.0000 120 chr3R:31723738-31723858 1.0000 120 chr3L:21202545-21202665 1.0000 120 chr3L:8241121-8241241 1.0000 120 chr2R:21704081-21704201 1.0000 120 chrX:9082680-9082800 1.0000 120 chr2R:21409717-21409837 1.0000 120 chrX:12906110-12906230 1.0000 120 chr3R:13819043-13819163 1.0000 120 chr2R:20281281-20281401 1.0000 120 chr3L:17137882-17138002 1.0000 120 chr3R:31738328-31738448 1.0000 120 chr3L:8626433-8626553 1.0000 120 chr3L:1609079-1609199 1.0000 120 chr3R:10081585-10081705 1.0000 120 chr2R:14921054-14921174 1.0000 120 chr2R:9242164-9242284 1.0000 120 chr3L:13412679-13412799 1.0000 120 chr3L:17006562-17006682 1.0000 120 chr2L:8707714-8707834 1.0000 120 chrX:22433038-22433158 1.0000 120 chr3L:22072018-22072138 1.0000 120 chr2L:8371688-8371808 1.0000 120 chr2R:21604328-21604448 1.0000 120 chr3R:21195650-21195770 1.0000 120 chr3L:8673656-8673776 1.0000 120 chrX:17579220-17579340 1.0000 120 chr3R:14779734-14779854 1.0000 120 chr2R:10275700-10275820 1.0000 120 chr3R:15898464-15898584 1.0000 120 chrX:20170047-20170167 1.0000 120 chr3R:25697292-25697412 1.0000 120 chr2L:9669456-9669576 1.0000 120 chr3R:9620259-9620379 1.0000 120 chrX:14832210-14832330 1.0000 120 chr3L:9096493-9096613 1.0000 120 chr3L:12179191-12179311 1.0000 120 chr3L:17401035-17401155 1.0000 120 chr3R:19925667-19925787 1.0000 120 chrX:10736113-10736233 1.0000 120 chr2R:23725185-23725305 1.0000 120 chr3L:9092780-9092900 1.0000 120 chrX:21010671-21010791 1.0000 120 chr3R:5839078-5839198 1.0000 120 chr2R:20534420-20534540 1.0000 120 chr2R:17849987-17850107 1.0000 120 chr3R:30084247-30084367 1.0000 120 chr2R:10252390-10252510 1.0000 120 chr3R:14734577-14734697 1.0000 120 chr3L:5641656-5641776 1.0000 120 chr2L:5302358-5302478 1.0000 120 chr2R:6810665-6810785 1.0000 120 chrX:15697326-15697446 1.0000 120 chr2L:2363057-2363177 1.0000 120 chrX:13934606-13934726 1.0000 120 chr3R:11170411-11170531 1.0000 120 chrX:13285753-13285873 1.0000 120 chr2L:16645902-16646022 1.0000 120 chrX:16598837-16598957 1.0000 120 chr3L:833734-833854 1.0000 120 chrX:16687947-16688067 1.0000 120 chr3L:1628606-1628726 1.0000 120 chr3R:10679318-10679438 1.0000 120 chr3R:17776941-17777061 1.0000 120 chr3R:23159721-23159841 1.0000 120 chr3L:833525-833645 1.0000 120 chr2L:131473-131593 1.0000 120 chr2L:6080388-6080508 1.0000 120 chr3R:28829708-28829828 1.0000 120 chr3L:13480621-13480741 1.0000 120 chr3R:14294694-14294814 1.0000 120 chr3L:12433934-12434054 1.0000 120 chrX:11426382-11426502 1.0000 120 chr2L:9737932-9738052 1.0000 120 chr2R:9554772-9554892 1.0000 120 chr2L:20316874-20316994 1.0000 120 chr3R:7947570-7947690 1.0000 120 chr3R:23519829-23519949 1.0000 120 chrX:10370030-10370150 1.0000 120 chr2R:6993946-6994066 1.0000 120 chr3R:7522797-7522917 1.0000 120 chrX:20433523-20433643 1.0000 120 chr3R:6456740-6456860 1.0000 120 chrX:3448326-3448446 1.0000 120 chr3R:22547453-22547573 1.0000 120 chr3L:17804722-17804842 1.0000 120 chr3R:19890340-19890460 1.0000 120 chr3L:1195960-1196080 1.0000 120 chr3L:8453814-8453934 1.0000 120 chr3R:10081348-10081468 1.0000 120 chrX:8973273-8973393 1.0000 120 chr2R:9184649-9184769 1.0000 120 chr3L:11276367-11276487 1.0000 120 chr2R:22572024-22572144 1.0000 120 chr3R:18167638-18167758 1.0000 120 chr3L:20241779-20241899 1.0000 120 chr3L:3209047-3209167 1.0000 120 chr3L:9466750-9466870 1.0000 120 chr2R:7300757-7300877 1.0000 120 chr2R:20667243-20667363 1.0000 120 chr3R:18546343-18546463 1.0000 120 chr3R:7076735-7076855 1.0000 120 chr2R:7257677-7257797 1.0000 120 chrX:23105842-23105962 1.0000 120 chr3L:2800391-2800511 1.0000 120 chr3R:10412889-10413009 1.0000 120 chr2L:874081-874201 1.0000 120 chr2R:7615758-7615878 1.0000 120 chr3R:7217321-7217441 1.0000 120 chr2L:2731466-2731586 1.0000 120 chr2L:6723453-6723573 1.0000 120 chr3R:5374762-5374882 1.0000 120 chrX:1900212-1900332 1.0000 120 chr3L:5247224-5247344 1.0000 120 chr3L:14381736-14381856 1.0000 120 chr3L:16150844-16150964 1.0000 120 chr3L:20827366-20827486 1.0000 120 chr3L:6495282-6495402 1.0000 120 chr3R:14568919-14569039 1.0000 120 chr2R:16617528-16617648 1.0000 120 chr2R:7730110-7730230 1.0000 120 chrX:8591873-8591993 1.0000 120 chrX:9202493-9202613 1.0000 120 chrX:18101862-18101982 1.0000 120 chr2L:7790838-7790958 1.0000 120 chr3L:5975883-5976003 1.0000 120 chr3R:21157326-21157446 1.0000 120 chr2R:10735590-10735710 1.0000 120 chr2R:5608840-5608960 1.0000 120 chr3R:7536333-7536453 1.0000 120 chr3R:12090810-12090930 1.0000 120 chr3R:24264971-24265091 1.0000 120 chr3L:2192195-2192315 1.0000 120 chr2R:16230611-16230731 1.0000 120 chr2L:21310518-21310638 1.0000 120 chr2R:10423907-10424027 1.0000 120 chr3L:8128774-8128894 1.0000 120 chr2R:23001997-23002117 1.0000 120 chr3R:5223337-5223457 1.0000 120 chr3R:9075131-9075251 1.0000 120 chrX:15796204-15796324 1.0000 120 chr3R:30308161-30308281 1.0000 120 chr3R:7330825-7330945 1.0000 120 chr2R:11969068-11969188 1.0000 120 chr3L:5134108-5134228 1.0000 120 chr3R:12406794-12406914 1.0000 120 chr3L:16234149-16234269 1.0000 120 chrX:2685235-2685355 1.0000 120 chr2R:10395602-10395722 1.0000 120 chr3R:18582435-18582555 1.0000 120 chrX:20468408-20468528 1.0000 120 chr3L:9333864-9333984 1.0000 120 chr2L:13461090-13461210 1.0000 120 chr3R:6406154-6406274 1.0000 120 chr2L:13289802-13289922 1.0000 120 chr2R:1514153-1514273 1.0000 120 chrX:13840253-13840373 1.0000 120 chr2L:17589840-17589960 1.0000 120 chr3R:25127401-25127521 1.0000 120 chr3R:27925080-27925200 1.0000 120 chr3R:12626930-12627050 1.0000 120 chr2R:14489846-14489966 1.0000 120 chr2R:16180112-16180232 1.0000 120 chr3R:29835180-29835300 1.0000 120 chr3R:26876684-26876804 1.0000 120 chrX:21519387-21519507 1.0000 120 chr2L:19415959-19416079 1.0000 120 chr2L:23174403-23174523 1.0000 120 chrX:8887692-8887812 1.0000 120 chrX:11149285-11149405 1.0000 120 chrX:6261018-6261138 1.0000 120 chrX:7324038-7324158 1.0000 120 chr3L:11627937-11628057 1.0000 120 chr3L:7833380-7833500 1.0000 120 chr3R:24006721-24006841 1.0000 120 chr3L:648271-648391 1.0000 120 chr2L:11808622-11808742 1.0000 120 chr3L:16150237-16150357 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_toe/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/toe.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.191 G 0.193 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.191 G 0.193 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGCCWCTG MEME-1 width = 8 sites = 19 llr = 177 E-value = 5.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::14::: pos.-specific C 8:971a:1 probability G 2a121::9 matrix T ::::4:a: bits 2.4 * * 2.1 * * 1.9 ** * * 1.7 *** *** Relative 1.4 *** *** Entropy 1.2 **** *** (13.4 bits) 1.0 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel CGCCACTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:1514153-1514273 37 9.47e-06 TCGTGCTGCT CGCCACTG TAACCTTCCA chr2R:23001997-23002117 106 9.47e-06 GCTGCTGAGG CGCCACTG TAAAATT chr2R:10423907-10424027 45 9.47e-06 GTTGGTGCTT CGCCTCTG TTTACCAACA chr3L:16977172-16977292 73 9.47e-06 GCTAATTATA CGCCTCTG TGCCTTACGC chr3L:8737873-8737993 100 9.47e-06 CAATTGTCGC CGCCTCTG TGTGTCGCCT chr3L:12432757-12432877 72 9.47e-06 TTTTTTTTTC CGCCTCtg agtgtgtgtg chr3L:16150237-16150357 37 2.49e-05 agatactcgc cgcgactg agatacagat chr3L:16234149-16234269 6 2.49e-05 AAAAT CGCGACTG AACAGTTATG chr3L:1195960-1196080 75 2.49e-05 TTTCTAGATC CGCCCCTG GCTGTTCGTG chr2R:17849987-17850107 99 2.49e-05 TTATTTTGGC CGCGACTG TTACTATGCA chrX:8591873-8591993 23 3.45e-05 CCATGTAAGT GGCCTCTG TAATTACTCC chr3R:5011187-5011307 110 3.45e-05 ATTGTGTTCT GGCCTCTG CCT chr3R:25312733-25312853 60 4.39e-05 GCATAGGTGG CGCCACTC TTCCGTTTTT chr3L:21202545-21202665 74 5.34e-05 CTTTATAGCA CGGCACTG TTTGGATTTT chr3R:8718570-8718690 16 5.34e-05 TATTTTTATA CGGCTCTG ATGGTCTAAA chr3L:8676630-8676750 35 7.16e-05 AAAAAAAGGC CGCAACTG CCGTCGGCGC chr3R:5706006-5706126 72 7.16e-05 AGTTCGCGAA CGCATCTG ATGGACAGCT chr3L:1612284-1612404 34 7.46e-05 TCTTTGATTT GGCCGCTG GTGTTGCAGT chr3R:27925080-27925200 104 7.75e-05 CGAGCGTCGT CGCCGCTC TTATTCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:1514153-1514273 9.5e-06 36_[+1]_76 chr2R:23001997-23002117 9.5e-06 105_[+1]_7 chr2R:10423907-10424027 9.5e-06 44_[+1]_68 chr3L:16977172-16977292 9.5e-06 72_[+1]_40 chr3L:8737873-8737993 9.5e-06 99_[+1]_13 chr3L:12432757-12432877 9.5e-06 71_[+1]_41 chr3L:16150237-16150357 2.5e-05 36_[+1]_76 chr3L:16234149-16234269 2.5e-05 5_[+1]_107 chr3L:1195960-1196080 2.5e-05 74_[+1]_38 chr2R:17849987-17850107 2.5e-05 98_[+1]_14 chrX:8591873-8591993 3.4e-05 22_[+1]_90 chr3R:5011187-5011307 3.4e-05 109_[+1]_3 chr3R:25312733-25312853 4.4e-05 59_[+1]_53 chr3L:21202545-21202665 5.3e-05 73_[+1]_39 chr3R:8718570-8718690 5.3e-05 15_[+1]_97 chr3L:8676630-8676750 7.2e-05 34_[+1]_78 chr3R:5706006-5706126 7.2e-05 71_[+1]_41 chr3L:1612284-1612404 7.5e-05 33_[+1]_79 chr3R:27925080-27925200 7.8e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCWCTG width=8 seqs=19 chr2R:1514153-1514273 ( 37) CGCCACTG 1 chr2R:23001997-23002117 ( 106) CGCCACTG 1 chr2R:10423907-10424027 ( 45) CGCCTCTG 1 chr3L:16977172-16977292 ( 73) CGCCTCTG 1 chr3L:8737873-8737993 ( 100) CGCCTCTG 1 chr3L:12432757-12432877 ( 72) CGCCTCTG 1 chr3L:16150237-16150357 ( 37) CGCGACTG 1 chr3L:16234149-16234269 ( 6) CGCGACTG 1 chr3L:1195960-1196080 ( 75) CGCCCCTG 1 chr2R:17849987-17850107 ( 99) CGCGACTG 1 chrX:8591873-8591993 ( 23) GGCCTCTG 1 chr3R:5011187-5011307 ( 110) GGCCTCTG 1 chr3R:25312733-25312853 ( 60) CGCCACTC 1 chr3L:21202545-21202665 ( 74) CGGCACTG 1 chr3R:8718570-8718690 ( 16) CGGCTCTG 1 chr3L:8676630-8676750 ( 35) CGCAACTG 1 chr3R:5706006-5706126 ( 72) CGCATCTG 1 chr3L:1612284-1612404 ( 34) GGCCGCTG 1 chr3R:27925080-27925200 ( 104) CGCCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 5.8e+003 -1089 214 -29 -1089 -1089 -1089 237 -1089 -1089 223 -87 -1089 -154 195 -29 -1089 46 -186 -87 44 -1089 239 -1089 -1089 -1089 -1089 -1089 169 -1089 -86 221 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.8e+003 0.000000 0.842105 0.157895 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.105263 0.000000 0.105263 0.736842 0.157895 0.000000 0.421053 0.052632 0.105263 0.421053 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.105263 0.894737 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCWCTG MEME-1 regular expression -------------------------------------------------------------------------------- CGCC[AT]CTG -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAGCCG MEME-2 width = 8 sites = 4 llr = 49 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C aaa::aa3 probability G ::::a::8 matrix T :::::::: bits 2.4 *** *** 2.1 *** *** 1.9 *** *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCAGCCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16150844-16150964 32 2.90e-06 TTTGCGCATT CCCAGCCG CTGTCACTCG chrX:8973273-8973393 89 2.90e-06 TCGGTGGCCA CCCAGCCG GGATTGATGC chr3L:1195960-1196080 43 2.90e-06 ATAAGAAATC CCCAGCCG GGGGAAATCC chr3L:12434726-12434846 66 5.76e-06 ACTCGCGCTG CCCAGCCC CTCCACTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16150844-16150964 2.9e-06 31_[+2]_81 chrX:8973273-8973393 2.9e-06 88_[+2]_24 chr3L:1195960-1196080 2.9e-06 42_[+2]_70 chr3L:12434726-12434846 5.8e-06 65_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAGCCG width=8 seqs=4 chr3L:16150844-16150964 ( 32) CCCAGCCG 1 chrX:8973273-8973393 ( 89) CCCAGCCG 1 chr3L:1195960-1196080 ( 43) CCCAGCCG 1 chr3L:12434726-12434846 ( 66) CCCAGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.2e+004 -865 238 -865 -865 -865 238 -865 -865 -865 238 -865 -865 171 -865 -865 -865 -865 -865 237 -865 -865 238 -865 -865 -865 238 -865 -865 -865 39 196 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAGCCG MEME-2 regular expression -------------------------------------------------------------------------------- CCCAGCC[GC] -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGSGC MEME-3 width = 8 sites = 21 llr = 195 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 2::::517 probability G 61aaa393 matrix T :9:::1:: bits 2.4 *** 2.1 *** 1.9 *** * 1.7 *** * Relative 1.4 *** ** Entropy 1.2 **** ** (13.4 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGCGC consensus A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21193314-21193434 62 3.03e-06 AACGCGATAC GTGGGCGC GCTGCCATTT chr3L:3209047-3209167 56 6.09e-06 ACTTGATATG GTGGGGGC TACTACGAGG chr3L:8626433-8626553 36 9.15e-06 CATTCGTTTG GTGGGCGG CAACGATCTG chr2R:21381316-21381436 4 9.15e-06 gca gtgggcgg tggTTGGAAA chr2R:10735590-10735710 69 1.21e-05 CCACAATTTT CTGGGCGC TTTCCTGCAG chr3R:10081585-10081705 87 1.21e-05 GCAGAGTAAA CTGGGCGC TAACAGTTGG chr3L:648271-648391 96 2.19e-05 AAACACCGAT ATGGGCGC ACTTCTTGTT chr3R:30308161-30308281 62 2.19e-05 CACGAGCTAA GTGGGGGG GCCCACCTCC chr3L:12432757-12432877 95 2.19e-05 gtgtgtgtgt gtgggggg gtgcgttagt chr2R:15220330-15220450 101 2.19e-05 CCGCTGCAAT ATGGGCGC TGCGTAGCAA chr3R:7536333-7536453 76 2.50e-05 CCCCCACACA CTGGGGGC TGAAAAAAAA chr3R:7947570-7947690 68 3.66e-05 CTAGACAGCT GTGGGTGC CCGCTGGTGT chr3L:12434726-12434846 4 3.66e-05 GAA GGGGGGGC TGAAAGGGGG chr3L:8737873-8737993 3 3.66e-05 AA GGGGGGGC GGATTTCTCA chr3L:12427270-12427390 51 3.66e-05 CCAGGTGCAG ATGGGGGC GATGGCGATT chrX:14832210-14832330 42 4.64e-05 AACTCAGAAT ATGGGCGG TTCCCACTGT chr2L:8371688-8371808 56 4.94e-05 GCAATAGACA GTGGGCCC TGTAGCTGGT chr2R:21704081-21704201 61 4.94e-05 GTGGCTCTAT GTGGGCCC AAGTAGTAAG chrX:10370984-10371104 68 5.43e-05 CAGCCGGTAG CGGGGCGC AGTGACACCT chr2R:7257677-7257797 38 6.91e-05 GTGATTCATG GTGGGTGG AGTGATCTTT chr3R:12406794-12406914 80 9.58e-05 GCTGCGGGAG ATGGGTGC AAAGTCCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21193314-21193434 3e-06 61_[+3]_51 chr3L:3209047-3209167 6.1e-06 55_[+3]_57 chr3L:8626433-8626553 9.1e-06 35_[+3]_77 chr2R:21381316-21381436 9.1e-06 3_[+3]_109 chr2R:10735590-10735710 1.2e-05 68_[+3]_44 chr3R:10081585-10081705 1.2e-05 86_[+3]_26 chr3L:648271-648391 2.2e-05 95_[+3]_17 chr3R:30308161-30308281 2.2e-05 61_[+3]_51 chr3L:12432757-12432877 2.2e-05 94_[+3]_18 chr2R:15220330-15220450 2.2e-05 100_[+3]_12 chr3R:7536333-7536453 2.5e-05 75_[+3]_37 chr3R:7947570-7947690 3.7e-05 67_[+3]_45 chr3L:12434726-12434846 3.7e-05 3_[+3]_109 chr3L:8737873-8737993 3.7e-05 2_[+3]_110 chr3L:12427270-12427390 3.7e-05 50_[+3]_62 chrX:14832210-14832330 4.6e-05 41_[+3]_71 chr2L:8371688-8371808 4.9e-05 55_[+3]_57 chr2R:21704081-21704201 4.9e-05 60_[+3]_52 chrX:10370984-10371104 5.4e-05 67_[+3]_45 chr2R:7257677-7257797 6.9e-05 37_[+3]_75 chr3R:12406794-12406914 9.6e-05 79_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGSGC width=8 seqs=21 chr3L:21193314-21193434 ( 62) GTGGGCGC 1 chr3L:3209047-3209167 ( 56) GTGGGGGC 1 chr3L:8626433-8626553 ( 36) GTGGGCGG 1 chr2R:21381316-21381436 ( 4) GTGGGCGG 1 chr2R:10735590-10735710 ( 69) CTGGGCGC 1 chr3R:10081585-10081705 ( 87) CTGGGCGC 1 chr3L:648271-648391 ( 96) ATGGGCGC 1 chr3R:30308161-30308281 ( 62) GTGGGGGG 1 chr3L:12432757-12432877 ( 95) GTGGGGGG 1 chr2R:15220330-15220450 ( 101) ATGGGCGC 1 chr3R:7536333-7536453 ( 76) CTGGGGGC 1 chr3R:7947570-7947690 ( 68) GTGGGTGC 1 chr3L:12434726-12434846 ( 4) GGGGGGGC 1 chr3L:8737873-8737993 ( 3) GGGGGGGC 1 chr3L:12427270-12427390 ( 51) ATGGGGGC 1 chrX:14832210-14832330 ( 42) ATGGGCGG 1 chr2L:8371688-8371808 ( 56) GTGGGCCC 1 chr2R:21704081-21704201 ( 61) GTGGGCCC 1 chrX:10370984-10371104 ( 68) CGGGGCGC 1 chr2R:7257677-7257797 ( 38) GTGGGTGG 1 chr3R:12406794-12406914 ( 80) ATGGGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 2.5e+003 -36 -1 157 -1104 -1104 -1104 -43 147 -1104 -1104 237 -1104 -1104 -1104 237 -1104 -1104 -1104 237 -1104 -1104 145 79 -112 -1104 -101 223 -1104 -1104 190 57 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.5e+003 0.238095 0.190476 0.571429 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.523810 0.333333 0.142857 0.000000 0.095238 0.904762 0.000000 0.000000 0.714286 0.285714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGSGC MEME-3 regular expression -------------------------------------------------------------------------------- [GA]TGGG[CG]G[CG] -------------------------------------------------------------------------------- Time 20.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCCCCC MEME-4 width = 8 sites = 2 llr = 25 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa5aaaaa probability G ::5::::: matrix T :::::::: bits 2.4 ** ***** 2.1 ** ***** 1.9 ** ***** 1.7 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (18.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7257677-7257797 16 3.56e-06 CAGCCACGTT CCGCCCCC AAAAGTGATT chr3L:12074995-12075115 111 3.56e-06 GAATAGCTAA CCCCCCCC TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7257677-7257797 3.6e-06 15_[+4]_97 chr3L:12074995-12075115 3.6e-06 110_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCCCC width=8 seqs=2 chr2R:7257677-7257797 ( 16) CCGCCCCC 1 chr3L:12074995-12075115 ( 111) CCCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.4e+004 -765 238 -765 -765 -765 238 -765 -765 -765 138 137 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[CG]CCCCC -------------------------------------------------------------------------------- Time 26.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCAC MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C aaaaaa:a probability G :::::::: matrix T :::::::: bits 2.4 ****** * 2.1 ****** * 1.9 ****** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30308161-30308281 85 2.84e-06 CCTCCCCCAC CCCCCCAC GCAAGCTGAT chr3R:26260995-26261115 24 2.84e-06 TTCGCGTAGC CCCCCCAC TCCTTCAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30308161-30308281 2.8e-06 84_[+5]_28 chr3R:26260995-26261115 2.8e-06 23_[+5]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCAC width=8 seqs=2 chr3R:30308161-30308281 ( 85) CCCCCCAC 1 chr3R:26260995-26261115 ( 24) CCCCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.1e+004 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 170 -765 -765 -765 -765 238 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCAC MEME-5 regular expression -------------------------------------------------------------------------------- CCCCCCAC -------------------------------------------------------------------------------- Time 32.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18515692-18515812 3.61e-01 120 chr2L:16653675-16653795 9.07e-01 120 chr2L:93104-93224 3.71e-02 120 chr3L:10110451-10110571 1.00e+00 120 chr2R:12170633-12170753 2.13e-01 120 chr3R:5706006-5706126 5.66e-02 71_[+1(7.16e-05)]_41 chr2R:15654536-15654656 1.00e+00 120 chr3L:21193314-21193434 1.90e-03 61_[+3(3.03e-06)]_51 chr3R:8718570-8718690 3.47e-02 15_[+1(5.34e-05)]_97 chr2L:20711531-20711651 4.30e-01 120 chr2R:21381316-21381436 1.12e-05 3_[+3(9.15e-06)]_21_[+5(9.34e-05)]_\ 80 chr3R:5772238-5772358 1.00e+00 120 chr3R:4654993-4655113 8.61e-01 120 chr2R:8145517-8145637 2.68e-01 120 chr3R:28025358-28025478 3.59e-02 120 chr3L:12427270-12427390 1.43e-02 50_[+3(3.66e-05)]_62 chr3L:4663993-4664113 9.11e-01 120 chr2R:15220330-15220450 3.90e-03 32_[+3(7.89e-05)]_60_[+3(2.19e-05)]_\ 12 chrX:13933328-13933448 6.08e-01 120 chr3R:10086200-10086320 4.68e-03 39_[+5(9.34e-05)]_73 chr3R:12817218-12817338 1.00e+00 120 chr3L:12074995-12075115 5.29e-05 110_[+4(3.56e-06)]_2 chr2L:10514699-10514819 6.02e-01 120 chr3R:8354091-8354211 1.97e-01 120 chr2L:16672445-16672565 9.03e-01 120 chr2R:22912112-22912232 4.30e-01 120 chrX:10370984-10371104 8.82e-03 55_[+2(9.51e-05)]_4_[+3(5.43e-05)]_\ 45 chr3L:8676630-8676750 2.65e-02 34_[+1(7.16e-05)]_78 chr2L:20861246-20861366 6.06e-02 29_[+5(9.34e-05)]_83 chr3R:19644949-19645069 9.75e-01 120 chr2L:13399749-13399869 1.00e+00 120 chr3R:9932074-9932194 6.76e-01 120 chr2L:125506-125626 6.53e-01 120 chr3L:12432757-12432877 1.13e-04 71_[+1(9.47e-06)]_15_[+3(2.19e-05)]_\ 18 chr2L:5303059-5303179 1.00e+00 120 chr2R:12279265-12279385 1.95e-01 120 chr3L:7844180-7844300 7.40e-02 120 chr3R:26325183-26325303 5.23e-01 120 chr3L:8737873-8737993 2.80e-04 2_[+3(3.66e-05)]_89_[+1(9.47e-06)]_\ 13 chr3R:15402740-15402860 8.95e-01 120 chr3L:17257344-17257464 1.00e+00 120 chr3R:18090064-18090184 8.73e-01 120 chr3R:5011187-5011307 4.17e-02 109_[+1(3.45e-05)]_3 chr3R:8353295-8353415 3.14e-01 120 chr3R:26260995-26261115 1.98e-04 23_[+5(2.84e-06)]_89 chr4:1029341-1029461 5.41e-01 120 chr3R:17287408-17287528 9.91e-01 120 chr3R:24264194-24264314 9.91e-01 120 chr3R:8562666-8562786 9.83e-01 120 chr2R:15412658-15412778 7.24e-01 120 chr3L:5640363-5640483 3.15e-02 120 chr3R:29905688-29905808 9.55e-01 120 chr3L:16977172-16977292 5.28e-02 72_[+1(9.47e-06)]_40 chr2R:9607194-9607314 8.46e-01 120 chr3L:1612284-1612404 1.60e-01 33_[+1(7.46e-05)]_79 chr3L:10756268-10756388 7.42e-01 120 chr3R:4685617-4685737 1.00e+00 120 chr2R:20526140-20526260 1.56e-01 120 chr2L:1982131-1982251 7.76e-01 120 chr2R:1515975-1516095 6.06e-01 120 chr3L:14204563-14204683 2.06e-02 120 chr2R:15143712-15143832 1.90e-02 34_[+5(9.34e-05)]_78 chr3R:25312733-25312853 2.95e-02 59_[+1(4.39e-05)]_53 chr3L:12434726-12434846 5.69e-07 3_[+3(3.66e-05)]_54_[+2(5.76e-06)]_\ 47 chr2L:19433445-19433565 1.00e+00 120 chr2R:23672684-23672804 9.17e-01 120 chr3R:27662118-27662238 3.52e-01 120 chr3R:24149016-24149136 1.00e+00 120 chr2L:18797749-18797869 9.29e-01 120 chr3L:12049980-12050100 2.68e-01 120 chr3R:30282709-30282829 7.91e-01 120 chr3R:14070245-14070365 8.82e-01 120 chr2R:11205568-11205688 2.53e-01 120 chr3R:31723738-31723858 3.74e-01 120 chr3L:21202545-21202665 2.75e-02 73_[+1(5.34e-05)]_39 chr3L:8241121-8241241 6.84e-01 120 chr2R:21704081-21704201 9.63e-03 60_[+3(4.94e-05)]_52 chrX:9082680-9082800 6.48e-01 120 chr2R:21409717-21409837 9.97e-01 120 chrX:12906110-12906230 2.22e-01 120 chr3R:13819043-13819163 3.64e-01 120 chr2R:20281281-20281401 5.90e-01 120 chr3L:17137882-17138002 1.00e+00 120 chr3R:31738328-31738448 6.29e-01 120 chr3L:8626433-8626553 4.65e-04 35_[+3(9.15e-06)]_77 chr3L:1609079-1609199 1.26e-01 120 chr3R:10081585-10081705 1.70e-02 86_[+3(1.21e-05)]_26 chr2R:14921054-14921174 9.19e-01 120 chr2R:9242164-9242284 9.93e-01 120 chr3L:13412679-13412799 8.32e-01 120 chr3L:17006562-17006682 9.94e-01 120 chr2L:8707714-8707834 3.70e-02 120 chrX:22433038-22433158 1.00e+00 120 chr3L:22072018-22072138 9.11e-01 120 chr2L:8371688-8371808 3.71e-02 55_[+3(4.94e-05)]_57 chr2R:21604328-21604448 8.42e-01 120 chr3R:21195650-21195770 1.00e+00 120 chr3L:8673656-8673776 9.04e-01 120 chrX:17579220-17579340 1.00e+00 120 chr3R:14779734-14779854 9.82e-01 120 chr2R:10275700-10275820 8.35e-01 120 chr3R:15898464-15898584 1.00e+00 120 chrX:20170047-20170167 4.23e-01 120 chr3R:25697292-25697412 4.55e-01 120 chr2L:9669456-9669576 1.00e+00 120 chr3R:9620259-9620379 6.51e-01 120 chrX:14832210-14832330 2.19e-01 41_[+3(4.64e-05)]_71 chr3L:9096493-9096613 9.88e-01 120 chr3L:12179191-12179311 9.55e-01 120 chr3L:17401035-17401155 6.66e-01 120 chr3R:19925667-19925787 6.00e-01 120 chrX:10736113-10736233 9.84e-01 120 chr2R:23725185-23725305 8.93e-02 120 chr3L:9092780-9092900 1.00e+00 120 chrX:21010671-21010791 1.00e+00 120 chr3R:5839078-5839198 4.11e-01 120 chr2R:20534420-20534540 5.40e-01 120 chr2R:17849987-17850107 1.21e-01 98_[+1(2.49e-05)]_14 chr3R:30084247-30084367 7.23e-01 120 chr2R:10252390-10252510 2.27e-01 120 chr3R:14734577-14734697 5.55e-01 120 chr3L:5641656-5641776 9.57e-01 120 chr2L:5302358-5302478 9.93e-01 120 chr2R:6810665-6810785 9.75e-01 120 chrX:15697326-15697446 9.74e-01 120 chr2L:2363057-2363177 1.11e-02 120 chrX:13934606-13934726 7.93e-01 120 chr3R:11170411-11170531 6.54e-01 120 chrX:13285753-13285873 9.05e-01 120 chr2L:16645902-16646022 1.22e-01 120 chrX:16598837-16598957 4.69e-01 120 chr3L:833734-833854 2.25e-01 120 chrX:16687947-16688067 5.48e-01 120 chr3L:1628606-1628726 3.60e-01 120 chr3R:10679318-10679438 1.00e+00 120 chr3R:17776941-17777061 9.97e-01 120 chr3R:23159721-23159841 7.03e-01 120 chr3L:833525-833645 3.51e-01 120 chr2L:131473-131593 6.13e-01 120 chr2L:6080388-6080508 5.81e-01 120 chr3R:28829708-28829828 6.76e-01 120 chr3L:13480621-13480741 6.78e-02 120 chr3R:14294694-14294814 2.12e-01 120 chr3L:12433934-12434054 1.27e-02 120 chrX:11426382-11426502 9.88e-01 120 chr2L:9737932-9738052 1.00e+00 120 chr2R:9554772-9554892 3.70e-01 120 chr2L:20316874-20316994 8.79e-01 120 chr3R:7947570-7947690 8.35e-02 67_[+3(3.66e-05)]_45 chr3R:23519829-23519949 9.77e-01 120 chrX:10370030-10370150 7.51e-01 120 chr2R:6993946-6994066 9.99e-01 120 chr3R:7522797-7522917 8.51e-01 120 chrX:20433523-20433643 9.99e-01 120 chr3R:6456740-6456860 1.00e+00 120 chrX:3448326-3448446 3.37e-01 120 chr3R:22547453-22547573 2.25e-03 82_[+5(9.34e-05)]_30 chr3L:17804722-17804842 6.91e-02 120 chr3R:19890340-19890460 9.95e-01 120 chr3L:1195960-1196080 1.80e-05 42_[+2(2.90e-06)]_24_[+1(2.49e-05)]_\ 38 chr3L:8453814-8453934 9.94e-01 120 chr3R:10081348-10081468 1.00e+00 120 chrX:8973273-8973393 3.51e-04 88_[+2(2.90e-06)]_24 chr2R:9184649-9184769 9.90e-01 120 chr3L:11276367-11276487 9.95e-01 120 chr2R:22572024-22572144 1.00e+00 120 chr3R:18167638-18167758 1.50e-02 120 chr3L:20241779-20241899 9.78e-01 120 chr3L:3209047-3209167 5.94e-03 55_[+3(6.09e-06)]_57 chr3L:9466750-9466870 1.00e+00 120 chr2R:7300757-7300877 8.13e-01 120 chr2R:20667243-20667363 1.57e-01 120 chr3R:18546343-18546463 8.86e-01 120 chr3R:7076735-7076855 1.74e-01 120 chr2R:7257677-7257797 2.01e-05 15_[+4(3.56e-06)]_14_[+3(6.91e-05)]_\ 75 chrX:23105842-23105962 8.84e-01 120 chr3L:2800391-2800511 9.73e-01 120 chr3R:10412889-10413009 4.15e-01 120 chr2L:874081-874201 9.79e-01 120 chr2R:7615758-7615878 1.00e+00 120 chr3R:7217321-7217441 1.00e+00 120 chr2L:2731466-2731586 6.58e-01 120 chr2L:6723453-6723573 1.00e+00 120 chr3R:5374762-5374882 8.37e-01 120 chrX:1900212-1900332 9.99e-01 120 chr3L:5247224-5247344 1.00e+00 120 chr3L:14381736-14381856 9.28e-01 120 chr3L:16150844-16150964 1.71e-03 31_[+2(2.90e-06)]_81 chr3L:20827366-20827486 9.98e-01 120 chr3L:6495282-6495402 1.83e-01 120 chr3R:14568919-14569039 9.83e-01 120 chr2R:16617528-16617648 1.41e-02 96_[+5(9.34e-05)]_16 chr2R:7730110-7730230 6.52e-01 120 chrX:8591873-8591993 7.27e-02 22_[+1(3.45e-05)]_90 chrX:9202493-9202613 1.00e+00 120 chrX:18101862-18101982 9.98e-01 120 chr2L:7790838-7790958 6.92e-01 120 chr3L:5975883-5976003 5.86e-01 120 chr3R:21157326-21157446 8.08e-01 120 chr2R:10735590-10735710 1.02e-03 68_[+3(1.21e-05)]_44 chr2R:5608840-5608960 9.28e-01 120 chr3R:7536333-7536453 1.33e-04 64_[+5(9.34e-05)]_3_[+3(2.50e-05)]_\ 37 chr3R:12090810-12090930 9.61e-01 120 chr3R:24264971-24265091 1.00e+00 120 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************