******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tll.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30856735-30856855 1.0000 120 chr3L:14582857-14582977 1.0000 120 chr3R:28596500-28596620 1.0000 120 chr3R:6663406-6663526 1.0000 120 chr3L:5836026-5836146 1.0000 120 chr2R:6523678-6523798 1.0000 120 chr3L:13111595-13111715 1.0000 120 chr2L:3608509-3608629 1.0000 120 chrX:2431243-2431363 1.0000 120 chr2R:13448003-13448123 1.0000 120 chr2L:28022-28142 1.0000 120 chrX:9691246-9691366 1.0000 120 chrX:6604172-6604292 1.0000 120 chr3R:13879842-13879962 1.0000 120 chr3L:6818373-6818493 1.0000 120 chr3L:373912-374032 1.0000 120 chr3L:49888-50008 1.0000 120 chr3R:29586851-29586971 1.0000 120 chr3R:14604122-14604242 1.0000 120 chr3R:21450659-21450779 1.0000 120 chrX:381660-381780 1.0000 120 chr3R:5720888-5721008 1.0000 120 chr2L:21190958-21191078 1.0000 120 chr2R:9986360-9986480 1.0000 120 chr2R:19273541-19273661 1.0000 120 chr3L:23230615-23230735 1.0000 120 chr3R:13911453-13911573 1.0000 120 chr2L:5877717-5877837 1.0000 120 chr2L:3819929-3820049 1.0000 120 chr3R:4854372-4854492 1.0000 120 chr3R:13894895-13895015 1.0000 120 chr3R:23039752-23039872 1.0000 120 chr3R:29546567-29546687 1.0000 120 chr3L:9804264-9804384 1.0000 120 chr3R:6544920-6545040 1.0000 120 chr2L:12092180-12092300 1.0000 120 chr3L:22364467-22364587 1.0000 120 chr2L:6250455-6250575 1.0000 120 chr2L:12089284-12089404 1.0000 120 chr3R:14462248-14462368 1.0000 120 chr2L:17739567-17739687 1.0000 120 chr2L:601987-602107 1.0000 120 chr3R:30861709-30861829 1.0000 120 chrX:20663631-20663751 1.0000 120 chr3L:4753707-4753827 1.0000 120 chr3L:16561668-16561788 1.0000 120 chr3R:17831110-17831230 1.0000 120 chr2R:15099838-15099958 1.0000 120 chr3L:12729724-12729844 1.0000 120 chr3L:20699982-20700102 1.0000 120 chr3R:10920320-10920440 1.0000 120 chr3L:15313336-15313456 1.0000 120 chrX:20713453-20713573 1.0000 120 chr3R:4352506-4352626 1.0000 120 chr3R:13988790-13988910 1.0000 120 chrX:2434562-2434682 1.0000 120 chrX:20734600-20734720 1.0000 120 chr3L:10277828-10277948 1.0000 120 chr3R:30851038-30851158 1.0000 120 chr3R:29516669-29516789 1.0000 120 chr3R:22052348-22052468 1.0000 120 chr3R:28574499-28574619 1.0000 120 chr3R:24553060-24553180 1.0000 120 chr4:509986-510106 1.0000 120 chr3R:10618696-10618816 1.0000 120 chr3R:23138576-23138696 1.0000 120 chr3L:14663907-14664027 1.0000 120 chrX:20691363-20691483 1.0000 120 chr3L:16018086-16018206 1.0000 120 chr3R:13882482-13882602 1.0000 120 chr2L:9827821-9827941 1.0000 120 chrX:20736252-20736372 1.0000 120 chr2L:18917748-18917868 1.0000 120 chr3R:10916239-10916359 1.0000 120 chr3R:29576136-29576256 1.0000 120 chr3L:13615244-13615364 1.0000 120 chr2L:356336-356456 1.0000 120 chr2R:21849197-21849317 1.0000 120 chrX:4456719-4456839 1.0000 120 chr3R:6860196-6860316 1.0000 120 chr2L:1401963-1402083 1.0000 120 chrX:7221267-7221387 1.0000 120 chrX:9736883-9737003 1.0000 120 chr3R:29258487-29258607 1.0000 120 chr3R:26793883-26794003 1.0000 120 chrX:19787008-19787128 1.0000 120 chr3L:13177920-13178040 1.0000 120 chr2L:4281482-4281602 1.0000 120 chr3R:8694663-8694783 1.0000 120 chr4:983397-983517 1.0000 120 chr3L:14581525-14581645 1.0000 120 chr3L:22066927-22067047 1.0000 120 chr3L:15954008-15954128 1.0000 120 chr3R:10920520-10920640 1.0000 120 chr3L:11035132-11035252 1.0000 120 chr3R:13893788-13893908 1.0000 120 chr3R:3843861-3843981 1.0000 120 chr2L:20066976-20067096 1.0000 120 chrX:7582488-7582608 1.0000 120 chr2L:5392183-5392303 1.0000 120 chr2L:7311580-7311700 1.0000 120 chr2L:9145887-9146007 1.0000 120 chr2L:3005598-3005718 1.0000 120 chr2L:16845309-16845429 1.0000 120 chr2L:7300123-7300243 1.0000 120 chr3R:13911655-13911775 1.0000 120 chr3R:15579526-15579646 1.0000 120 chr3R:13895094-13895214 1.0000 120 chr3L:9152689-9152809 1.0000 120 chr2R:24931231-24931351 1.0000 120 chr3L:15313538-15313658 1.0000 120 chr3R:31329344-31329464 1.0000 120 chr3R:8307628-8307748 1.0000 120 chr2R:22256271-22256391 1.0000 120 chr2L:8145519-8145639 1.0000 120 chr2R:11566896-11567016 1.0000 120 chr2L:4574494-4574614 1.0000 120 chr3L:20697732-20697852 1.0000 120 chr3L:4017780-4017900 1.0000 120 chr2L:3829338-3829458 1.0000 120 chr2L:7304828-7304948 1.0000 120 chr3R:8284283-8284403 1.0000 120 chr2R:25069896-25070016 1.0000 120 chrX:20680746-20680866 1.0000 120 chrX:9468118-9468238 1.0000 120 chrX:6857374-6857494 1.0000 120 chrX:380535-380655 1.0000 120 chr2L:7291795-7291915 1.0000 120 chr3L:7031071-7031191 1.0000 120 chrX:7039289-7039409 1.0000 120 chrX:584185-584305 1.0000 120 chr3R:6421442-6421562 1.0000 120 chr3R:24397509-24397629 1.0000 120 chr2R:20083070-20083190 1.0000 120 chr2R:20631338-20631458 1.0000 120 chr4:846207-846327 1.0000 120 chr2R:11537446-11537566 1.0000 120 chr3L:10648849-10648969 1.0000 120 chr3R:16951591-16951711 1.0000 120 chr4:826356-826476 1.0000 120 chr3R:16936428-16936548 1.0000 120 chr2L:15313662-15313782 1.0000 120 chr3R:23129729-23129849 1.0000 120 chrX:20724821-20724941 1.0000 120 chr2R:17830371-17830491 1.0000 120 chr3R:10668068-10668188 1.0000 120 chr2R:12206113-12206233 1.0000 120 chr2R:8641048-8641168 1.0000 120 chr3L:21449475-21449595 1.0000 120 chr3R:8640294-8640414 1.0000 120 chr3R:6857821-6857941 1.0000 120 chrX:20663299-20663419 1.0000 120 chr2R:11800130-11800250 1.0000 120 chr3R:16731587-16731707 1.0000 120 chr3L:14153824-14153944 1.0000 120 chr3R:30157479-30157599 1.0000 120 chr3R:30849910-30850030 1.0000 120 chr3L:14575787-14575907 1.0000 120 chr3R:13936443-13936563 1.0000 120 chr3R:23134070-23134190 1.0000 120 chrX:7571804-7571924 1.0000 120 chr3L:735453-735573 1.0000 120 chr2L:12087547-12087667 1.0000 120 chr3L:4757669-4757789 1.0000 120 chr2R:25225442-25225562 1.0000 120 chr3L:18012921-18013041 1.0000 120 chr3L:21482220-21482340 1.0000 120 chr2R:22238500-22238620 1.0000 120 chr3R:26887292-26887412 1.0000 120 chr2L:21040858-21040978 1.0000 120 chr3L:3516491-3516611 1.0000 120 chr3L:22067819-22067939 1.0000 120 chrX:20680546-20680666 1.0000 120 chrX:8776641-8776761 1.0000 120 chr2L:590075-590195 1.0000 120 chr2R:20037276-20037396 1.0000 120 chr3L:18173776-18173896 1.0000 120 chr3R:16911894-16912014 1.0000 120 chrX:18304524-18304644 1.0000 120 chr2L:15485970-15486090 1.0000 120 chrX:18668392-18668512 1.0000 120 chr3L:5955826-5955946 1.0000 120 chrX:18260123-18260243 1.0000 120 chr3R:30266920-30267040 1.0000 120 chr2R:20897783-20897903 1.0000 120 chr3R:13811929-13812049 1.0000 120 chr3R:21863419-21863539 1.0000 120 chr2R:10465850-10465970 1.0000 120 chr2L:15741137-15741257 1.0000 120 chr2L:14430555-14430675 1.0000 120 chr3R:26256194-26256314 1.0000 120 chr3R:13878753-13878873 1.0000 120 chr2R:12460662-12460782 1.0000 120 chr2R:14817278-14817398 1.0000 120 chr3R:22044582-22044702 1.0000 120 chrX:16203388-16203508 1.0000 120 chr3R:8307422-8307542 1.0000 120 chr3R:25469188-25469308 1.0000 120 chrX:13647507-13647627 1.0000 120 chr2R:14800326-14800446 1.0000 120 chr2R:22548831-22548951 1.0000 120 chrX:17368664-17368784 1.0000 120 chr2R:20859631-20859751 1.0000 120 chr3R:9596132-9596252 1.0000 120 chr2L:9186749-9186869 1.0000 120 chr3L:15025773-15025893 1.0000 120 chr3R:21458568-21458688 1.0000 120 chrX:17324389-17324509 1.0000 120 chr2R:20168596-20168716 1.0000 120 chrX:593062-593182 1.0000 120 chr3R:6731868-6731988 1.0000 120 chr2R:8654921-8655041 1.0000 120 chr2L:3071950-3072070 1.0000 120 chr2L:5412698-5412818 1.0000 120 chr3L:10763821-10763941 1.0000 120 chr3R:25195237-25195357 1.0000 120 chr2L:12616391-12616511 1.0000 120 chr3L:20684757-20684877 1.0000 120 chr3R:27442728-27442848 1.0000 120 chr2L:183359-183479 1.0000 120 chr3R:6215429-6215549 1.0000 120 chr2R:15756498-15756618 1.0000 120 chr2R:6627360-6627480 1.0000 120 chr2R:6823542-6823662 1.0000 120 chr2R:25223203-25223323 1.0000 120 chr2R:15325088-15325208 1.0000 120 chr2R:13567858-13567978 1.0000 120 chr2L:588067-588187 1.0000 120 chr3R:13928681-13928801 1.0000 120 chr3R:16033071-16033191 1.0000 120 chr2R:17386504-17386624 1.0000 120 chrX:18304324-18304444 1.0000 120 chr3L:21477977-21478097 1.0000 120 chr3R:13293759-13293879 1.0000 120 chr3R:21427013-21427133 1.0000 120 chr3R:5684272-5684392 1.0000 120 chr2L:8789353-8789473 1.0000 120 chr3L:21449677-21449797 1.0000 120 chr3L:20629556-20629676 1.0000 120 chr2R:11532631-11532751 1.0000 120 chr2L:21066935-21067055 1.0000 120 chr3L:8666261-8666381 1.0000 120 chr3R:5240844-5240964 1.0000 120 chr2R:16155355-16155475 1.0000 120 chr3L:14173441-14173561 1.0000 120 chr3L:2477086-2477206 1.0000 120 chr2L:20784555-20784675 1.0000 120 chr3R:30755327-30755447 1.0000 120 chrX:16204754-16204874 1.0000 120 chr2L:3893456-3893576 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tll/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tll.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.231 G 0.231 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.231 G 0.231 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAGTCAA MEME-1 width = 8 sites = 68 llr = 561 E-value = 1.1e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7aa:::98 pos.-specific C :::::8:: probability G 3::a2:12 matrix T 1:::82:: bits 2.1 * 1.9 *** 1.7 *** 1.5 *** ** Relative 1.3 *** *** Entropy 1.1 ******* (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGTCAA consensus G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8789353-8789473 93 2.00e-05 ACTCGGCCCA AAAGTCAA GCGTTGTTTG chr2L:588067-588187 70 2.00e-05 AAGAAGAAGA AAAGTCAA AGTGAAAGGA chr2R:6823542-6823662 74 2.00e-05 CTGTTAATTC AAAGTCAA CAGCCCCGAA chr3L:20684757-20684877 79 2.00e-05 CATGTCTACA AAAGTCAA AAAGCCATAT chr3R:9596132-9596252 41 2.00e-05 ATGGCGGGAT AAAGTCAA GGCATCGCGG chr3R:22044582-22044702 59 2.00e-05 CAAGCCAACA AAAGTCAA CTTTCggggc chr2R:25225442-25225562 62 2.00e-05 AAACCATTTA AAAGTCAA TCCGCAAAAG chr3L:14575787-14575907 91 2.00e-05 TGTCCAGCCG AAAGTCAA TTGGGAAAAA chrX:6857374-6857494 19 2.00e-05 AGGAACGGCA AAAGTCAA TGTTGAATAC chr2L:7300123-7300243 54 2.00e-05 GGCGCAGGCA AAAGTCAA TGTCCTAGGA chr3R:29576136-29576256 75 2.00e-05 TTGCGATGTG AAAGTCAA CAATCCTAAG chrX:20736252-20736372 96 2.00e-05 TCAAGGCTGC AAAGTCAA TTGCGAAAAA chr3R:4352506-4352626 62 2.00e-05 CAACAGCCGC AAAGTCAA ATGCAAATTG chr3L:15313336-15313456 7 2.00e-05 GCTACC AAAGTCAA TGGCACTCGA chr3R:29546567-29546687 75 2.00e-05 AGCCAATTTG AAAGTCAA AGTGCAAACA chr2R:19273541-19273661 96 2.00e-05 AAAAGTCAGC AAAGTCAA CACTGACCAG chr3R:30856735-30856855 29 2.00e-05 GCGGCAAGCA AAAGTCAA AGCGGCGTTG chr2R:25223203-25223323 15 3.72e-05 CGGCAATTAA GAAGTCAA ATTTCTCTTA chr3R:6731868-6731988 51 3.72e-05 ACACAGGGGA GAAGTCAA CAGTCGATGA chr3R:6421442-6421562 102 3.72e-05 CACAGCACTT GAAGTCAA ATGTAAACAT chr2R:11566896-11567016 27 3.72e-05 ATTGTCCATA GAAGTCAA TGGTCAATGG chrX:9691246-9691366 82 3.72e-05 TTGATGCGAC GAAGTCAA AACTTTTCCA chr2L:15485970-15486090 29 5.43e-05 GCAAAAAACC AAAGGCAA CGCCGATTTC chr3R:13936443-13936563 15 5.43e-05 CAGTCGTTTA AAAGGCAA ACAATGGATG chrX:9468118-9468238 4 5.43e-05 aca aaaggcaa ctgcaacaCA chr3R:8284283-8284403 96 5.43e-05 GCAGCCCAAG AAAGGCAA ACTGCTTGGA chr3L:373912-374032 39 5.43e-05 TAGTAAAGGA AAAGGCAA ATCAATCAGT chr3L:2477086-2477206 50 7.15e-05 AGATTAGACA AAAGTCAG CAGTGATTAC chr2R:17386504-17386624 49 7.15e-05 CTGAAAAGCC AAAGTCAG TTTTAGACCA chr3R:26887292-26887412 65 7.15e-05 CCTTTTGCGA AAAGTCAG GGAAAATGAA chr3R:16936428-16936548 51 7.15e-05 AACGagagtc aaagtcag attcggagtc chr3L:7031071-7031191 80 7.15e-05 ACATCCTGCG AAAGTCAG CCATTTGTAC chr3R:10618696-10618816 50 7.15e-05 GTGTTGAGGA AAAGTCAG GAAGAAAAAC chr3R:13293759-13293879 1 9.50e-05 . AAAGTTAA TACCCAGGAT chrX:593062-593182 82 9.50e-05 GCACTTATTC AAAGTTAA TTCCGGGGGA chr2R:22548831-22548951 11 9.50e-05 AGTGATAACA AAAGTTAA GTAAACCTAC chr3R:16911894-16912014 64 9.50e-05 CGAAAACTGT AAAGTTAA GTTCGAAAAG chr3R:31329344-31329464 3 9.50e-05 AT AAAGTTAA TGACATGCAG chr3L:9804264-9804384 67 9.50e-05 GACCAGGTAG AAAGTTAA ATTCGGGCCA chr3L:4017780-4017900 72 1.10e-04 GTAAAAATCG GAAGGCAA CTGCCACGAG chr3R:8307628-8307748 37 1.10e-04 CCGTCTCCGT GAAGGCAA TGTCGATAAT chr3R:10920320-10920440 106 1.10e-04 aggtgataga gaaggcaa acaatca chr2R:22238500-22238620 1 1.24e-04 . GAAGTCAG GTAGTCTGGC chr3R:8694663-8694783 21 1.24e-04 GAGGTGACGG GAAGTCAG GTACAGGtcg chr2L:4281482-4281602 92 1.24e-04 TCACCTGTCT GAAGTCAG AAATTAGTGA chrX:4456719-4456839 42 1.24e-04 ACAAAGGAGA GAAGTCAG CAATGGTCCT chr3R:29586851-29586971 46 1.24e-04 TGGACAGAAT GAAGTCAG AGGTCAGAGG chrX:18668392-18668512 99 1.45e-04 AGTAGTGCGT TAAGTCAA CGAACGCAGT chr3L:18012921-18013041 31 1.45e-04 CAGCCATTTG TAAGTCAA CGAACCAAGA chr3L:4757669-4757789 64 1.45e-04 GAAAGGGGCA TAAGTCAA AAGTGCAGGT chr3L:10648849-10648969 53 1.45e-04 CACCTGTCTG TAAGTCAA GATCCCACGT chr3R:13893788-13893908 104 1.45e-04 TGGCTTAAAT TAAGTCAA GTATGTGAG chr3R:6215429-6215549 100 1.59e-04 CAAAGACAAC AAAGGCAG AGAAGAACTT chr3R:25195237-25195357 40 1.59e-04 CTAGAAAAAC AAAGGCAG GCGCTGCGCG chrX:9736883-9737003 3 1.59e-04 AA AAAGGCAG GAGAAAAGAA chr2L:14430555-14430675 11 1.77e-04 GATTTCACAA AAAGTCGA CAAAAGCAAA chr2L:3005598-3005718 93 1.77e-04 GAAGGGCGAG AAAGTCGA GGACATTTTA chr3R:13988790-13988910 39 1.77e-04 AAAAATAAAC AAAGTCGA AGGTAATCCA chrX:20724821-20724941 87 1.97e-04 GGATCTGGAC GAAGTTAA CCCAAAAACC chr2R:20083070-20083190 7 1.97e-04 TACAAC GAAGTTAA AAGCCAACCG chr3R:14604122-14604242 18 1.97e-04 TCCCCGAAGC GAAGTTAA ATAAAAGTGT chr2R:15325088-15325208 42 2.17e-04 GCTCAATTTG AAAGGTAA ACATGCCACA chr3R:8307422-8307542 18 2.17e-04 TCACACTCGA AAAGGTAA TTGGAAAGCA chr2L:5877717-5877837 67 2.17e-04 GTAGGCCCAA AAAGGTAA TCCCTCTCTC chr3R:16951591-16951711 26 2.82e-04 TGTCGATGTC GAAGTCGA TGCCCAACTG chr3R:13928681-13928801 68 2.99e-04 GTATTGTCAG TAAGTCAG TTAGTTGGCC chr2R:15756498-15756618 11 3.14e-04 GAAATGGCAA AAAGGCGA AAAGGCCTGT chr3R:21450659-21450779 66 3.14e-04 ACTGGTCCAC AAAGGCGA GGGAAAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8789353-8789473 2e-05 92_[+1]_20 chr2L:588067-588187 2e-05 69_[+1]_43 chr2R:6823542-6823662 2e-05 73_[+1]_39 chr3L:20684757-20684877 2e-05 78_[+1]_34 chr3R:9596132-9596252 2e-05 40_[+1]_72 chr3R:22044582-22044702 2e-05 58_[+1]_54 chr2R:25225442-25225562 2e-05 61_[+1]_51 chr3L:14575787-14575907 2e-05 90_[+1]_22 chrX:6857374-6857494 2e-05 18_[+1]_94 chr2L:7300123-7300243 2e-05 53_[+1]_59 chr3R:29576136-29576256 2e-05 74_[+1]_38 chrX:20736252-20736372 2e-05 95_[+1]_17 chr3R:4352506-4352626 2e-05 61_[+1]_51 chr3L:15313336-15313456 2e-05 6_[+1]_106 chr3R:29546567-29546687 2e-05 74_[+1]_38 chr2R:19273541-19273661 2e-05 95_[+1]_17 chr3R:30856735-30856855 2e-05 28_[+1]_84 chr2R:25223203-25223323 3.7e-05 14_[+1]_98 chr3R:6731868-6731988 3.7e-05 50_[+1]_62 chr3R:6421442-6421562 3.7e-05 101_[+1]_11 chr2R:11566896-11567016 3.7e-05 26_[+1]_86 chrX:9691246-9691366 3.7e-05 81_[+1]_31 chr2L:15485970-15486090 5.4e-05 28_[+1]_84 chr3R:13936443-13936563 5.4e-05 14_[+1]_98 chrX:9468118-9468238 5.4e-05 3_[+1]_109 chr3R:8284283-8284403 5.4e-05 95_[+1]_17 chr3L:373912-374032 5.4e-05 38_[+1]_74 chr3L:2477086-2477206 7.1e-05 49_[+1]_63 chr2R:17386504-17386624 7.1e-05 48_[+1]_64 chr3R:26887292-26887412 7.1e-05 64_[+1]_48 chr3R:16936428-16936548 7.1e-05 50_[+1]_62 chr3L:7031071-7031191 7.1e-05 79_[+1]_33 chr3R:10618696-10618816 7.1e-05 49_[+1]_63 chr3R:13293759-13293879 9.5e-05 [+1]_112 chrX:593062-593182 9.5e-05 81_[+1]_31 chr2R:22548831-22548951 9.5e-05 10_[+1]_102 chr3R:16911894-16912014 9.5e-05 63_[+1]_49 chr3R:31329344-31329464 9.5e-05 2_[+1]_110 chr3L:9804264-9804384 9.5e-05 66_[+1]_46 chr3L:4017780-4017900 0.00011 71_[+1]_41 chr3R:8307628-8307748 0.00011 36_[+1]_76 chr3R:10920320-10920440 0.00011 105_[+1]_7 chr2R:22238500-22238620 0.00012 [+1]_112 chr3R:8694663-8694783 0.00012 20_[+1]_92 chr2L:4281482-4281602 0.00012 91_[+1]_21 chrX:4456719-4456839 0.00012 41_[+1]_71 chr3R:29586851-29586971 0.00012 45_[+1]_67 chrX:18668392-18668512 0.00014 98_[+1]_14 chr3L:18012921-18013041 0.00014 30_[+1]_82 chr3L:4757669-4757789 0.00014 63_[+1]_49 chr3L:10648849-10648969 0.00014 52_[+1]_60 chr3R:13893788-13893908 0.00014 103_[+1]_9 chr3R:6215429-6215549 0.00016 99_[+1]_13 chr3R:25195237-25195357 0.00016 39_[+1]_73 chrX:9736883-9737003 0.00016 2_[+1]_110 chr2L:14430555-14430675 0.00018 10_[+1]_102 chr2L:3005598-3005718 0.00018 92_[+1]_20 chr3R:13988790-13988910 0.00018 38_[+1]_74 chrX:20724821-20724941 0.0002 86_[+1]_26 chr2R:20083070-20083190 0.0002 6_[+1]_106 chr3R:14604122-14604242 0.0002 17_[+1]_95 chr2R:15325088-15325208 0.00022 41_[+1]_71 chr3R:8307422-8307542 0.00022 17_[+1]_95 chr2L:5877717-5877837 0.00022 66_[+1]_46 chr3R:16951591-16951711 0.00028 25_[+1]_87 chr3R:13928681-13928801 0.0003 67_[+1]_45 chr2R:15756498-15756618 0.00031 10_[+1]_102 chr3R:21450659-21450779 0.00031 65_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGTCAA width=8 seqs=68 chr2L:8789353-8789473 ( 93) AAAGTCAA 1 chr2L:588067-588187 ( 70) AAAGTCAA 1 chr2R:6823542-6823662 ( 74) AAAGTCAA 1 chr3L:20684757-20684877 ( 79) AAAGTCAA 1 chr3R:9596132-9596252 ( 41) AAAGTCAA 1 chr3R:22044582-22044702 ( 59) AAAGTCAA 1 chr2R:25225442-25225562 ( 62) AAAGTCAA 1 chr3L:14575787-14575907 ( 91) AAAGTCAA 1 chrX:6857374-6857494 ( 19) AAAGTCAA 1 chr2L:7300123-7300243 ( 54) AAAGTCAA 1 chr3R:29576136-29576256 ( 75) AAAGTCAA 1 chrX:20736252-20736372 ( 96) AAAGTCAA 1 chr3R:4352506-4352626 ( 62) AAAGTCAA 1 chr3L:15313336-15313456 ( 7) AAAGTCAA 1 chr3R:29546567-29546687 ( 75) AAAGTCAA 1 chr2R:19273541-19273661 ( 96) AAAGTCAA 1 chr3R:30856735-30856855 ( 29) AAAGTCAA 1 chr2R:25223203-25223323 ( 15) GAAGTCAA 1 chr3R:6731868-6731988 ( 51) GAAGTCAA 1 chr3R:6421442-6421562 ( 102) GAAGTCAA 1 chr2R:11566896-11567016 ( 27) GAAGTCAA 1 chrX:9691246-9691366 ( 82) GAAGTCAA 1 chr2L:15485970-15486090 ( 29) AAAGGCAA 1 chr3R:13936443-13936563 ( 15) AAAGGCAA 1 chrX:9468118-9468238 ( 4) AAAGGCAA 1 chr3R:8284283-8284403 ( 96) AAAGGCAA 1 chr3L:373912-374032 ( 39) AAAGGCAA 1 chr3L:2477086-2477206 ( 50) AAAGTCAG 1 chr2R:17386504-17386624 ( 49) AAAGTCAG 1 chr3R:26887292-26887412 ( 65) AAAGTCAG 1 chr3R:16936428-16936548 ( 51) AAAGTCAG 1 chr3L:7031071-7031191 ( 80) AAAGTCAG 1 chr3R:10618696-10618816 ( 50) AAAGTCAG 1 chr3R:13293759-13293879 ( 1) AAAGTTAA 1 chrX:593062-593182 ( 82) AAAGTTAA 1 chr2R:22548831-22548951 ( 11) AAAGTTAA 1 chr3R:16911894-16912014 ( 64) AAAGTTAA 1 chr3R:31329344-31329464 ( 3) AAAGTTAA 1 chr3L:9804264-9804384 ( 67) AAAGTTAA 1 chr3L:4017780-4017900 ( 72) GAAGGCAA 1 chr3R:8307628-8307748 ( 37) GAAGGCAA 1 chr3R:10920320-10920440 ( 106) GAAGGCAA 1 chr2R:22238500-22238620 ( 1) GAAGTCAG 1 chr3R:8694663-8694783 ( 21) GAAGTCAG 1 chr2L:4281482-4281602 ( 92) GAAGTCAG 1 chrX:4456719-4456839 ( 42) GAAGTCAG 1 chr3R:29586851-29586971 ( 46) GAAGTCAG 1 chrX:18668392-18668512 ( 99) TAAGTCAA 1 chr3L:18012921-18013041 ( 31) TAAGTCAA 1 chr3L:4757669-4757789 ( 64) TAAGTCAA 1 chr3L:10648849-10648969 ( 53) TAAGTCAA 1 chr3R:13893788-13893908 ( 104) TAAGTCAA 1 chr3R:6215429-6215549 ( 100) AAAGGCAG 1 chr3R:25195237-25195357 ( 40) AAAGGCAG 1 chrX:9736883-9737003 ( 3) AAAGGCAG 1 chr2L:14430555-14430675 ( 11) AAAGTCGA 1 chr2L:3005598-3005718 ( 93) AAAGTCGA 1 chr3R:13988790-13988910 ( 39) AAAGTCGA 1 chrX:20724821-20724941 ( 87) GAAGTTAA 1 chr2R:20083070-20083190 ( 7) GAAGTTAA 1 chr3R:14604122-14604242 ( 18) GAAGTTAA 1 chr2R:15325088-15325208 ( 42) AAAGGTAA 1 chr3R:8307422-8307542 ( 18) AAAGGTAA 1 chr2L:5877717-5877837 ( 67) AAAGGTAA 1 chr3R:16951591-16951711 ( 26) GAAGTCGA 1 chr3R:13928681-13928801 ( 68) TAAGTCAG 1 chr2R:15756498-15756618 ( 11) AAAGGCGA 1 chr3R:21450659-21450779 ( 66) AAAGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0621 E= 1.1e-022 130 -1273 12 -162 190 -1273 -1273 -1273 190 -1273 -1273 -1273 -1273 -1273 212 -1273 -1273 -1273 3 150 -1273 184 -1273 -62 177 -1273 -139 -1273 154 -1273 -6 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 1.1e-022 0.661765 0.000000 0.250000 0.088235 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.235294 0.764706 0.000000 0.823529 0.000000 0.176471 0.911765 0.000000 0.088235 0.000000 0.779412 0.000000 0.220588 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTCAA MEME-1 regular expression -------------------------------------------------------------------------------- [AG]AAG[TG]CA[AG] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGACTTT MEME-2 width = 8 sites = 50 llr = 450 E-value = 5.2e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C 3:12a::1 probability G ::9::::: matrix T 7a:::aa8 bits 2.1 * 1.9 * *** 1.7 ** *** 1.5 ** *** Relative 1.3 ****** Entropy 1.1 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGACTTT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20784555-20784675 101 2.09e-05 GAAATGGTTT TTGACTTT TGCCGACGCC chr3R:5684272-5684392 77 2.09e-05 GCTATTTTCG TTGACTTT TTTGTAGTTC chr3L:21477977-21478097 15 2.09e-05 ATATTTTTTA TTGACTTT GTCAGCTTTA chr2R:17386504-17386624 79 2.09e-05 TCGTGGCCTT TTGACTTT TCCACGCTGG chr2R:14800326-14800446 102 2.09e-05 GAGAGCTTGT TTGACTTT TCCGTGAATT chr3R:30266920-30267040 85 2.09e-05 TGACAGCCAA TTGACTTT GCGGTCGAAA chrX:8776641-8776761 6 2.09e-05 CTTTG TTGACTTT TTGTCAATTG chrX:20680546-20680666 104 2.09e-05 TCCTAATCCT TTGACTTT CAGTTTGAC chr2R:22238500-22238620 61 2.09e-05 CAGGCCAAAC TTGACTTT TGGCTAAGGC chr3L:14575787-14575907 72 2.09e-05 AACCCCCTAG TTGACTTT TTGTCCAGCC chr2R:8641048-8641168 26 2.09e-05 GACTTCGACT TTGACTTT GATCTGCAGC chr2R:17830371-17830491 32 2.09e-05 CCTAATCCTT TTGACTTT TCAAAGGCGT chr3R:6860196-6860316 106 2.09e-05 TTCGGCATCC TTGACTTT GATTGGT chrX:20691363-20691483 105 2.09e-05 ATCCGGGCGA TTGACTTT CATAAGCA chr2L:17739567-17739687 36 2.09e-05 TCTTCAATTG TTGACTTT ACTATTAACA chr2L:12089284-12089404 91 2.09e-05 CGATCGCCAG TTGACTTT TTCAAATATT chr2L:6250455-6250575 73 2.09e-05 GTCTGACGTC TTGACTTT GGACCTCAAA chr3L:9804264-9804384 32 2.09e-05 GACTCGCTAA TTGACTTT TTGACTTCAC chr2L:3608509-3608629 98 2.09e-05 CTTGGCAGGA TTGACTTT GGGTGATTAA chr3R:6663406-6663526 43 2.09e-05 TCCTTTCCGT TTGACTTT TGGCTTGTTT chr3R:28596500-28596620 111 2.09e-05 TTGTTATGGA TTGACTTT GG chr3L:14582857-14582977 31 2.09e-05 GTTAATCCTT TTGACTTT GTCCGTTTGA chr3R:16033071-16033191 22 3.87e-05 TTGTGACTGA CTGACTTT CCTCGCCCTG chrX:17368664-17368784 91 3.87e-05 AAGGCCGAAA CTGACTTT GCGCAGGCGC chr2R:14817278-14817398 104 3.87e-05 ATTATGTGAG CTGACTTT TGCTGAATC chr3L:20697732-20697852 106 3.87e-05 CAAATCTGCG CTGACTTT TTGACTT chr3R:13894895-13895015 108 3.87e-05 CGGACCTCTT CTGACTTT TGTAA chr3R:5720888-5721008 32 3.87e-05 GAGATAATCT CTGACTTT TCACTTGTGT chrX:381660-381780 27 3.87e-05 AATTTGTGGA CTGACTTT TGTGGTCAAG chr2L:21066935-21067055 8 5.67e-05 TAGCTAT TTGCCTTT TGGGGGGCCG chr3R:23134070-23134190 110 5.67e-05 TGACAGGATG TTGCCTTT GTG chr3R:29258487-29258607 66 5.67e-05 TTTTGTCTTC TTGCCTTT TTGTTATATG chr2L:9827821-9827941 60 5.67e-05 CCCACCATTG TTGCCTTT GCCACTCCCT chr3R:29586851-29586971 21 5.67e-05 GTGATTTCTT TTGCCTTT TGGGGTGTGG chr2R:12206113-12206233 38 7.46e-05 CAACACATGG TTGACTTC TTGTATTACT chr3L:16561668-16561788 39 7.46e-05 atgGTTGCTC TTGACTTC TGCGTTGGAA chr2R:6523678-6523798 77 7.46e-05 CAACAGCAAG TTGACTTC AAGCGGCAGA chr3R:13928681-13928801 46 8.99e-05 CAGCCATTAA CTGCCTTT GTGCGTATTG chr3R:23129729-23129849 33 8.99e-05 ACTGAAAGGA CTGCCTTT TGCGGCTCGC chrX:9468118-9468238 64 8.99e-05 CACTGGCCAA CTGCCTTT GTGTGTGCGT chr2L:601987-602107 46 8.99e-05 CAAAACTCct ctgccttt tcctcaggct chr2L:21040858-21040978 105 1.11e-04 TATGACACTT TTCACTTT ATGAGGTG chr3R:30849910-30850030 55 1.11e-04 GAATTTTTTA TTCACTTT TATTCATCGG chrX:584185-584305 44 1.11e-04 GCGCATTATA TTCACTTT GTCACCTTTT chr3L:10277828-10277948 55 1.11e-04 TGTTTGCCAT TTCACTTT CACCTTTCGC chr2L:3819929-3820049 102 1.26e-04 GTCTGCTTTT CTGACTTC TTAATTGTGT chr2R:9986360-9986480 33 1.26e-04 GCATTTGCAA CTGACTTC TGCACTGGGT chr2L:590075-590195 57 1.44e-04 TTAGGCGTAT TTGACTTG CACGCACCAC chr3R:28574499-28574619 16 1.44e-04 TTACATCCTT TTGACTTG CAATTCGGAA chrX:20663631-20663751 69 1.59e-04 gctgttgctg ttgcCTTC TGGGAATCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20784555-20784675 2.1e-05 100_[+2]_12 chr3R:5684272-5684392 2.1e-05 76_[+2]_36 chr3L:21477977-21478097 2.1e-05 14_[+2]_98 chr2R:17386504-17386624 2.1e-05 78_[+2]_34 chr2R:14800326-14800446 2.1e-05 101_[+2]_11 chr3R:30266920-30267040 2.1e-05 84_[+2]_28 chrX:8776641-8776761 2.1e-05 5_[+2]_107 chrX:20680546-20680666 2.1e-05 103_[+2]_9 chr2R:22238500-22238620 2.1e-05 60_[+2]_52 chr3L:14575787-14575907 2.1e-05 71_[+2]_41 chr2R:8641048-8641168 2.1e-05 25_[+2]_87 chr2R:17830371-17830491 2.1e-05 31_[+2]_81 chr3R:6860196-6860316 2.1e-05 105_[+2]_7 chrX:20691363-20691483 2.1e-05 104_[+2]_8 chr2L:17739567-17739687 2.1e-05 35_[+2]_77 chr2L:12089284-12089404 2.1e-05 90_[+2]_22 chr2L:6250455-6250575 2.1e-05 72_[+2]_40 chr3L:9804264-9804384 2.1e-05 31_[+2]_81 chr2L:3608509-3608629 2.1e-05 97_[+2]_15 chr3R:6663406-6663526 2.1e-05 42_[+2]_70 chr3R:28596500-28596620 2.1e-05 110_[+2]_2 chr3L:14582857-14582977 2.1e-05 30_[+2]_82 chr3R:16033071-16033191 3.9e-05 21_[+2]_91 chrX:17368664-17368784 3.9e-05 90_[+2]_22 chr2R:14817278-14817398 3.9e-05 103_[+2]_9 chr3L:20697732-20697852 3.9e-05 105_[+2]_7 chr3R:13894895-13895015 3.9e-05 107_[+2]_5 chr3R:5720888-5721008 3.9e-05 31_[+2]_81 chrX:381660-381780 3.9e-05 26_[+2]_86 chr2L:21066935-21067055 5.7e-05 7_[+2]_105 chr3R:23134070-23134190 5.7e-05 109_[+2]_3 chr3R:29258487-29258607 5.7e-05 65_[+2]_47 chr2L:9827821-9827941 5.7e-05 59_[+2]_53 chr3R:29586851-29586971 5.7e-05 20_[+2]_92 chr2R:12206113-12206233 7.5e-05 37_[+2]_75 chr3L:16561668-16561788 7.5e-05 38_[+2]_74 chr2R:6523678-6523798 7.5e-05 76_[+2]_36 chr3R:13928681-13928801 9e-05 45_[+2]_67 chr3R:23129729-23129849 9e-05 32_[+2]_80 chrX:9468118-9468238 9e-05 63_[+2]_49 chr2L:601987-602107 9e-05 45_[+2]_67 chr2L:21040858-21040978 0.00011 104_[+2]_8 chr3R:30849910-30850030 0.00011 54_[+2]_58 chrX:584185-584305 0.00011 43_[+2]_69 chr3L:10277828-10277948 0.00011 54_[+2]_58 chr2L:3819929-3820049 0.00013 101_[+2]_11 chr2R:9986360-9986480 0.00013 32_[+2]_80 chr2L:590075-590195 0.00014 56_[+2]_56 chr3R:28574499-28574619 0.00014 15_[+2]_97 chrX:20663631-20663751 0.00016 68_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGACTTT width=8 seqs=50 chr2L:20784555-20784675 ( 101) TTGACTTT 1 chr3R:5684272-5684392 ( 77) TTGACTTT 1 chr3L:21477977-21478097 ( 15) TTGACTTT 1 chr2R:17386504-17386624 ( 79) TTGACTTT 1 chr2R:14800326-14800446 ( 102) TTGACTTT 1 chr3R:30266920-30267040 ( 85) TTGACTTT 1 chrX:8776641-8776761 ( 6) TTGACTTT 1 chrX:20680546-20680666 ( 104) TTGACTTT 1 chr2R:22238500-22238620 ( 61) TTGACTTT 1 chr3L:14575787-14575907 ( 72) TTGACTTT 1 chr2R:8641048-8641168 ( 26) TTGACTTT 1 chr2R:17830371-17830491 ( 32) TTGACTTT 1 chr3R:6860196-6860316 ( 106) TTGACTTT 1 chrX:20691363-20691483 ( 105) TTGACTTT 1 chr2L:17739567-17739687 ( 36) TTGACTTT 1 chr2L:12089284-12089404 ( 91) TTGACTTT 1 chr2L:6250455-6250575 ( 73) TTGACTTT 1 chr3L:9804264-9804384 ( 32) TTGACTTT 1 chr2L:3608509-3608629 ( 98) TTGACTTT 1 chr3R:6663406-6663526 ( 43) TTGACTTT 1 chr3R:28596500-28596620 ( 111) TTGACTTT 1 chr3L:14582857-14582977 ( 31) TTGACTTT 1 chr3R:16033071-16033191 ( 22) CTGACTTT 1 chrX:17368664-17368784 ( 91) CTGACTTT 1 chr2R:14817278-14817398 ( 104) CTGACTTT 1 chr3L:20697732-20697852 ( 106) CTGACTTT 1 chr3R:13894895-13895015 ( 108) CTGACTTT 1 chr3R:5720888-5721008 ( 32) CTGACTTT 1 chrX:381660-381780 ( 27) CTGACTTT 1 chr2L:21066935-21067055 ( 8) TTGCCTTT 1 chr3R:23134070-23134190 ( 110) TTGCCTTT 1 chr3R:29258487-29258607 ( 66) TTGCCTTT 1 chr2L:9827821-9827941 ( 60) TTGCCTTT 1 chr3R:29586851-29586971 ( 21) TTGCCTTT 1 chr2R:12206113-12206233 ( 38) TTGACTTC 1 chr3L:16561668-16561788 ( 39) TTGACTTC 1 chr2R:6523678-6523798 ( 77) TTGACTTC 1 chr3R:13928681-13928801 ( 46) CTGCCTTT 1 chr3R:23129729-23129849 ( 33) CTGCCTTT 1 chrX:9468118-9468238 ( 64) CTGCCTTT 1 chr2L:601987-602107 ( 46) CTGCCTTT 1 chr2L:21040858-21040978 ( 105) TTCACTTT 1 chr3R:30849910-30850030 ( 55) TTCACTTT 1 chrX:584185-584305 ( 44) TTCACTTT 1 chr3L:10277828-10277948 ( 55) TTCACTTT 1 chr2L:3819929-3820049 ( 102) CTGACTTC 1 chr2R:9986360-9986480 ( 33) CTGACTTC 1 chr2L:590075-590195 ( 57) TTGACTTG 1 chr3R:28574499-28574619 ( 16) TTGACTTG 1 chrX:20663631-20663751 ( 69) TTGCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2738 E= 5.2e-022 -1229 17 -1229 145 -1229 -1229 -1229 188 -1229 -153 200 -1229 158 -20 -1229 -1229 -1229 212 -1229 -1229 -1229 -1229 -1229 188 -1229 -1229 -1229 188 -1229 -94 -253 163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 5.2e-022 0.000000 0.260000 0.000000 0.740000 0.000000 0.000000 0.000000 1.000000 0.000000 0.080000 0.920000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.120000 0.040000 0.840000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGACTTT MEME-2 regular expression -------------------------------------------------------------------------------- [TC]TG[AC]CTTT -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGTTTGY MEME-3 width = 8 sites = 67 llr = 506 E-value = 2.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C :::::::4 probability G 4:9:3:71 matrix T 6a1a7a24 bits 2.1 1.9 * * * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 ****** (10.9 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5240844-5240964 92 1.80e-05 AATCAGCCCT TTGTTTGC TGTCTGTGAG chr2R:12206113-12206233 80 1.80e-05 AGTTAAATCC TTGTTTGC TTTCATGAAA chr2R:20631338-20631458 6 1.80e-05 GTCTT TTGTTTGC TCGTCGAAGC chr3R:15579526-15579646 41 1.80e-05 TGCTCGATCT TTGTTTGC TTACTGCGGC chr2L:5392183-5392303 71 1.80e-05 TTGCTCCTCT TTGTTTGC CTATTTACAC chr3L:14581525-14581645 61 1.80e-05 GAACAGTTTA TTGTTTGC TTTTTTTGCC chr2L:1401963-1402083 42 1.80e-05 CTGTTTACAT TTGTTTGC TTTTGTATTT chr3L:6818373-6818493 42 1.80e-05 GTTATTTCCA TTGTTTGC TCTTTTGGCC chr3R:6663406-6663526 55 1.80e-05 GACTTTTGGC TTGTTTGC GTGATTTTGC chr2L:8789353-8789473 104 5.45e-05 AAGTCAAGCG TTGTTTGT TATTCTGGC chr2R:6823542-6823662 110 5.45e-05 CGAGCCCATT GTGTTTGC CTA chr2R:6627360-6627480 92 5.45e-05 TTGTTGTTGT GTGTTTGC ATTGATTGAT chr2R:15756498-15756618 27 5.45e-05 GAAAAGGCCT GTGTTTGC TCACAATTGT chr2L:9186749-9186869 12 5.45e-05 TCCCACATTT GTGTTTGC TCAACTTGAA chr2R:12460662-12460782 4 5.45e-05 TGG TTGTTTGT CCAGGGAGCA chr4:826356-826476 65 5.45e-05 TGTGTATTGT TTGTTTGT TGATGGTGCA chr3L:15313538-15313658 13 5.45e-05 TTCGGTATAG TTGTTTGT CCAATCGGTC chr3L:15954008-15954128 76 5.45e-05 CCTCAGTGTC TTGTTTGT TTTCAGTAGA chr2L:18917748-18917868 19 5.45e-05 CGCTTCTAAT TTGTTTGT CCTGGCAGGC chr3L:10277828-10277948 31 5.45e-05 ATTCCCTTTG TTGTTTGT TGGCCGTGTT chr3L:21482220-21482340 2 7.25e-05 T GTGTTTGT CTTTGGCTTT chr3L:16561668-16561788 15 7.25e-05 GCgtgtgcgt gtgtttgt gtgtgtatgG chrX:13647507-13647627 7 8.79e-05 CCGCTT TTGTGTGC AGGTAGTTGG chr3L:5955826-5955946 19 8.79e-05 GAtgtgtgtg ttgtgtgc atgtgtgtgG chrX:7582488-7582608 46 8.79e-05 GAGCCTATTA TTGTGTGC TTATAATGCC chrX:19787008-19787128 17 8.79e-05 TGCGTGCAAC TTGTGTGC CGCAGTTAAT chr2R:20083070-20083190 26 1.19e-04 AGCCAACCGA TTGTGTGT GGTCCGAAAG chrX:9468118-9468238 72 1.19e-04 AACTGCCTTT GTGTGTGC GTGTGCACGC chr3R:13893788-13893908 57 1.19e-04 ACTGACTCAC TTGTGTGT GATCCTCGCC chr3R:10920320-10920440 26 1.19e-04 gcaagcaccc gtgtgtgc ggtcacttgc chr3L:49888-50008 101 1.19e-04 GAGGCTCAAG GTGTGTGC ATGTATGTAT chr3L:21477977-21478097 86 1.34e-04 GTGGATGTGA GTGTGTGT ACGCGAGAGG chr3R:16731587-16731707 20 1.34e-04 TCTGCGCGCA GTGTGTGT CCTGAAAGGA chrX:6857374-6857494 55 1.34e-04 ATATGTATGT GTGTGTGT ATGTGTATTT chr3R:22052348-22052468 79 1.34e-04 CTACATGTGC GTGTGTGT ACTTAAAAGA chr2R:22238500-22238620 39 1.52e-04 GCAGATGCGA TTGTTTGG CCAACAGGCC chr3R:13895094-13895214 48 1.52e-04 GTTTGTCGGC TTGTTTGG GCCCGAAGTT chr3R:6215429-6215549 44 2.10e-04 ATTAGGTCTG TTGTTTAC TTTCGACTGC chr2L:15741137-15741257 63 2.10e-04 CCAAACAAAT TTGTTTAC GTGAGTTTTT chrX:20680546-20680666 15 2.10e-04 TTTGCGATTT TTGTTTAC GAGTATTTTG chr3R:8640294-8640414 26 2.10e-04 ACATACGTAT GTGTTTGG TTTATTAGTT chr4:983397-983517 53 2.10e-04 AGGTCAACAT TTGTTTAC CTTTTGTCTT chr2R:21849197-21849317 67 2.10e-04 TAAGCGAACC GTGTTTGG CTGTGATCTT chr2R:11532631-11532751 86 2.53e-04 TTTAGTCTTC TTGTTTTT TCGATTTAAT chr2L:5412698-5412818 98 2.53e-04 CACCACCTAC TTGTTTTT TTTTTGTGTT chr3L:4757669-4757789 33 2.53e-04 TAAGAATGAA TTGTTTTT TATTACGCCA chr3R:10668068-10668188 14 2.53e-04 atttcttttt ttgttttt CTTCGGTTTT chr3L:9152689-9152809 23 2.53e-04 AGTTGTTTTG TTGTTTTT GTGAAATGAG chrX:18668392-18668512 42 2.95e-04 GCTCTTGCCT GTGTTTAC AACACACATT chr3R:26887292-26887412 46 2.95e-04 CAGGGGCCTC GTGTTTAC ACCTTTTGCG chr3R:24397509-24397629 54 2.95e-04 TCAAACCTAT TTGTTTAT AACCTAAAAA chrX:17368664-17368784 4 3.16e-04 TTT GTGTTTTT CAGTAGTCCG chrX:16203388-16203508 94 3.16e-04 GCACTTGGCA GTGTTTTT CCTGAAAAGT chr4:509986-510106 102 3.16e-04 TTATGTTGTC GTGTTTTT GTGTTTATGT chr3R:28596500-28596620 95 3.16e-04 GGCCATGGCT GTGTTTTT GTTATGGATT chr3R:27442728-27442848 47 3.37e-04 GCAGTTTCAA GTGTTTAT TCCTGGACAC chr3L:13615244-13615364 39 3.52e-04 ATGTGTGTCT TTGTGTGG GTAAACAATG chr2R:25069896-25070016 82 4.38e-04 TAATCTGCTT TTGTGTTT GATTTCAATC chr2R:24931231-24931351 57 5.31e-04 atgtgtgaat gtgtgtat ggtgtgggtg chr3R:10920520-10920640 72 5.31e-04 TAGTTCTCTG GTGTGTAT ACTTCATGCC chr3R:28574499-28574619 101 5.31e-04 TGAATGGTCC TTGTTTTG ATGGCTTAGC chr2L:12092180-12092300 88 5.31e-04 CCAAAAACCA TTGTTTTG GCCAACGAAG chr3R:17831110-17831230 18 5.52e-04 AAAGGTTCAT TTGTTTAG CACCCGTACG chrX:18304324-18304444 44 6.51e-04 ATGCAGAAAT GTTTTTGC TCAGCGTCTC chr3R:24553060-24553180 36 6.51e-04 TTGAGAGCTC GTTTTTGC ATGAAGTGAC chr3R:21863419-21863539 1 7.42e-04 . TTTTGTGC GCGCCTGCGC chr3R:30157479-30157599 23 7.94e-04 GTGGGAAACA GTTTGTGC CACAGATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5240844-5240964 1.8e-05 91_[+3]_21 chr2R:12206113-12206233 1.8e-05 79_[+3]_33 chr2R:20631338-20631458 1.8e-05 5_[+3]_107 chr3R:15579526-15579646 1.8e-05 40_[+3]_72 chr2L:5392183-5392303 1.8e-05 70_[+3]_42 chr3L:14581525-14581645 1.8e-05 60_[+3]_52 chr2L:1401963-1402083 1.8e-05 41_[+3]_71 chr3L:6818373-6818493 1.8e-05 41_[+3]_71 chr3R:6663406-6663526 1.8e-05 54_[+3]_58 chr2L:8789353-8789473 5.5e-05 103_[+3]_9 chr2R:6823542-6823662 5.5e-05 109_[+3]_3 chr2R:6627360-6627480 5.5e-05 91_[+3]_21 chr2R:15756498-15756618 5.5e-05 26_[+3]_86 chr2L:9186749-9186869 5.5e-05 11_[+3]_101 chr2R:12460662-12460782 5.5e-05 3_[+3]_109 chr4:826356-826476 5.5e-05 64_[+3]_48 chr3L:15313538-15313658 5.5e-05 12_[+3]_100 chr3L:15954008-15954128 5.5e-05 75_[+3]_37 chr2L:18917748-18917868 5.5e-05 18_[+3]_94 chr3L:10277828-10277948 5.5e-05 30_[+3]_82 chr3L:21482220-21482340 7.3e-05 1_[+3]_111 chr3L:16561668-16561788 7.3e-05 14_[+3]_98 chrX:13647507-13647627 8.8e-05 6_[+3]_106 chr3L:5955826-5955946 8.8e-05 18_[+3]_94 chrX:7582488-7582608 8.8e-05 45_[+3]_67 chrX:19787008-19787128 8.8e-05 16_[+3]_96 chr2R:20083070-20083190 0.00012 25_[+3]_87 chrX:9468118-9468238 0.00012 71_[+3]_41 chr3R:13893788-13893908 0.00012 56_[+3]_56 chr3R:10920320-10920440 0.00012 25_[+3]_87 chr3L:49888-50008 0.00012 100_[+3]_12 chr3L:21477977-21478097 0.00013 85_[+3]_27 chr3R:16731587-16731707 0.00013 19_[+3]_93 chrX:6857374-6857494 0.00013 54_[+3]_58 chr3R:22052348-22052468 0.00013 78_[+3]_34 chr2R:22238500-22238620 0.00015 38_[+3]_74 chr3R:13895094-13895214 0.00015 47_[+3]_65 chr3R:6215429-6215549 0.00021 43_[+3]_69 chr2L:15741137-15741257 0.00021 62_[+3]_50 chrX:20680546-20680666 0.00021 14_[+3]_98 chr3R:8640294-8640414 0.00021 25_[+3]_87 chr4:983397-983517 0.00021 52_[+3]_60 chr2R:21849197-21849317 0.00021 66_[+3]_46 chr2R:11532631-11532751 0.00025 85_[+3]_27 chr2L:5412698-5412818 0.00025 97_[+3]_15 chr3L:4757669-4757789 0.00025 32_[+3]_80 chr3R:10668068-10668188 0.00025 13_[+3]_99 chr3L:9152689-9152809 0.00025 22_[+3]_90 chrX:18668392-18668512 0.00029 41_[+3]_71 chr3R:26887292-26887412 0.00029 45_[+3]_67 chr3R:24397509-24397629 0.00029 53_[+3]_59 chrX:17368664-17368784 0.00032 3_[+3]_109 chrX:16203388-16203508 0.00032 93_[+3]_19 chr4:509986-510106 0.00032 101_[+3]_11 chr3R:28596500-28596620 0.00032 94_[+3]_18 chr3R:27442728-27442848 0.00034 46_[+3]_66 chr3L:13615244-13615364 0.00035 38_[+3]_74 chr2R:25069896-25070016 0.00044 81_[+3]_31 chr2R:24931231-24931351 0.00053 56_[+3]_56 chr3R:10920520-10920640 0.00053 71_[+3]_41 chr3R:28574499-28574619 0.00053 100_[+3]_12 chr2L:12092180-12092300 0.00053 87_[+3]_25 chr3R:17831110-17831230 0.00055 17_[+3]_95 chrX:18304324-18304444 0.00065 43_[+3]_69 chr3R:24553060-24553180 0.00065 35_[+3]_77 chr3R:21863419-21863539 0.00074 [+3]_112 chr3R:30157479-30157599 0.00079 22_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGTTTGY width=8 seqs=67 chr3R:5240844-5240964 ( 92) TTGTTTGC 1 chr2R:12206113-12206233 ( 80) TTGTTTGC 1 chr2R:20631338-20631458 ( 6) TTGTTTGC 1 chr3R:15579526-15579646 ( 41) TTGTTTGC 1 chr2L:5392183-5392303 ( 71) TTGTTTGC 1 chr3L:14581525-14581645 ( 61) TTGTTTGC 1 chr2L:1401963-1402083 ( 42) TTGTTTGC 1 chr3L:6818373-6818493 ( 42) TTGTTTGC 1 chr3R:6663406-6663526 ( 55) TTGTTTGC 1 chr2L:8789353-8789473 ( 104) TTGTTTGT 1 chr2R:6823542-6823662 ( 110) GTGTTTGC 1 chr2R:6627360-6627480 ( 92) GTGTTTGC 1 chr2R:15756498-15756618 ( 27) GTGTTTGC 1 chr2L:9186749-9186869 ( 12) GTGTTTGC 1 chr2R:12460662-12460782 ( 4) TTGTTTGT 1 chr4:826356-826476 ( 65) TTGTTTGT 1 chr3L:15313538-15313658 ( 13) TTGTTTGT 1 chr3L:15954008-15954128 ( 76) TTGTTTGT 1 chr2L:18917748-18917868 ( 19) TTGTTTGT 1 chr3L:10277828-10277948 ( 31) TTGTTTGT 1 chr3L:21482220-21482340 ( 2) GTGTTTGT 1 chr3L:16561668-16561788 ( 15) GTGTTTGT 1 chrX:13647507-13647627 ( 7) TTGTGTGC 1 chr3L:5955826-5955946 ( 19) TTGTGTGC 1 chrX:7582488-7582608 ( 46) TTGTGTGC 1 chrX:19787008-19787128 ( 17) TTGTGTGC 1 chr2R:20083070-20083190 ( 26) TTGTGTGT 1 chrX:9468118-9468238 ( 72) GTGTGTGC 1 chr3R:13893788-13893908 ( 57) TTGTGTGT 1 chr3R:10920320-10920440 ( 26) GTGTGTGC 1 chr3L:49888-50008 ( 101) GTGTGTGC 1 chr3L:21477977-21478097 ( 86) GTGTGTGT 1 chr3R:16731587-16731707 ( 20) GTGTGTGT 1 chrX:6857374-6857494 ( 55) GTGTGTGT 1 chr3R:22052348-22052468 ( 79) GTGTGTGT 1 chr2R:22238500-22238620 ( 39) TTGTTTGG 1 chr3R:13895094-13895214 ( 48) TTGTTTGG 1 chr3R:6215429-6215549 ( 44) TTGTTTAC 1 chr2L:15741137-15741257 ( 63) TTGTTTAC 1 chrX:20680546-20680666 ( 15) TTGTTTAC 1 chr3R:8640294-8640414 ( 26) GTGTTTGG 1 chr4:983397-983517 ( 53) TTGTTTAC 1 chr2R:21849197-21849317 ( 67) GTGTTTGG 1 chr2R:11532631-11532751 ( 86) TTGTTTTT 1 chr2L:5412698-5412818 ( 98) TTGTTTTT 1 chr3L:4757669-4757789 ( 33) TTGTTTTT 1 chr3R:10668068-10668188 ( 14) TTGTTTTT 1 chr3L:9152689-9152809 ( 23) TTGTTTTT 1 chrX:18668392-18668512 ( 42) GTGTTTAC 1 chr3R:26887292-26887412 ( 46) GTGTTTAC 1 chr3R:24397509-24397629 ( 54) TTGTTTAT 1 chrX:17368664-17368784 ( 4) GTGTTTTT 1 chrX:16203388-16203508 ( 94) GTGTTTTT 1 chr4:509986-510106 ( 102) GTGTTTTT 1 chr3R:28596500-28596620 ( 95) GTGTTTTT 1 chr3R:27442728-27442848 ( 47) GTGTTTAT 1 chr3L:13615244-13615364 ( 39) TTGTGTGG 1 chr2R:25069896-25070016 ( 82) TTGTGTTT 1 chr2R:24931231-24931351 ( 57) GTGTGTAT 1 chr3R:10920520-10920640 ( 72) GTGTGTAT 1 chr3R:28574499-28574619 ( 101) TTGTTTTG 1 chr2L:12092180-12092300 ( 88) TTGTTTTG 1 chr3R:17831110-17831230 ( 18) TTGTTTAG 1 chrX:18304324-18304444 ( 44) GTTTTTGC 1 chr3R:24553060-24553180 ( 36) GTTTTTGC 1 chr3R:21863419-21863539 ( 1) TTTTGTGC 1 chr3R:30157479-30157599 ( 23) GTTTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49857 E= 2.8e+000 -1271 -1271 80 114 -1271 -1271 -1271 188 -1271 -1271 203 -218 -1271 -1271 -1271 188 -1271 -1271 30 140 -1271 -1271 -1271 188 -71 -1271 151 -60 -1271 96 -95 68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 2.8e+000 0.000000 0.000000 0.402985 0.597015 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.940299 0.059701 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.283582 0.716418 0.000000 0.000000 0.000000 1.000000 0.164179 0.000000 0.656716 0.179104 0.000000 0.447761 0.119403 0.432836 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGTTTGY MEME-3 regular expression -------------------------------------------------------------------------------- [TG]TGT[TG]TG[CT] -------------------------------------------------------------------------------- Time 19.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGAAAA MEME-4 width = 8 sites = 17 llr = 170 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::2aaaa pos.-specific C :2:::::: probability G :8a8:::: matrix T a::::::: bits 2.1 * 1.9 * * **** 1.7 * * **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGGAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20629556-20629676 44 1.72e-05 ACTCGTCGTT TGGGAAAA TGTGTGCCAA chr3L:21449677-21449797 52 1.72e-05 TTTCTGGTCC TGGGAAAA TTGCAGTTTA chr3R:6215429-6215549 5 1.72e-05 TGTG TGGGAAAA TTGGCCTCTT chr3R:25469188-25469308 33 1.72e-05 CGAGGGAAAG TGGGAAAA CGCTGAGACG chrX:18260123-18260243 74 1.72e-05 TGCAGGATGC TGGGAAAA TATTTACACG chr2L:15485970-15486090 101 1.72e-05 TATAAAATCG TGGGAAAA CGCCGCCTAC chr3L:14575787-14575907 100 1.72e-05 GAAAGTCAAT TGGGAAAA ATTAATTTGG chr3R:13911655-13911775 29 1.72e-05 AAAAGGGAGC TGGGAAAA TCCCAGTGAC chr3R:6860196-6860316 44 1.72e-05 CGTGACGCAT TGGGAAAA TATTTGTACA chr3L:20699982-20700102 82 1.72e-05 TTAAGCTAAC TGGGAAAA AACGCCGTCA chr2R:19273541-19273661 35 1.72e-05 GGCTTTGAGC TGGGAAAA CGTCTTTATC chr3L:4017780-4017900 51 3.45e-05 CTTCGTTCGC TCGGAAAA GTCGTAAAAA chrX:20713453-20713573 13 3.45e-05 GTAAATCAGT TCGGAAAA TACAGTTTGC chr3L:12729724-12729844 101 3.45e-05 TAAAATTAAG TCGGAAAA CGTGTCAAAG chr3L:15025773-15025893 112 5.45e-05 CCAACAACAG TGGAAAAA T chr3L:9152689-9152809 41 5.45e-05 GTGAAATGAG TGGAAAAA GTCATTTGTA chr3L:49888-50008 37 5.45e-05 ACATTTGACC TGGAAAAA AGAGTTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20629556-20629676 1.7e-05 43_[+4]_69 chr3L:21449677-21449797 1.7e-05 51_[+4]_61 chr3R:6215429-6215549 1.7e-05 4_[+4]_108 chr3R:25469188-25469308 1.7e-05 32_[+4]_80 chrX:18260123-18260243 1.7e-05 73_[+4]_39 chr2L:15485970-15486090 1.7e-05 100_[+4]_12 chr3L:14575787-14575907 1.7e-05 99_[+4]_13 chr3R:13911655-13911775 1.7e-05 28_[+4]_84 chr3R:6860196-6860316 1.7e-05 43_[+4]_69 chr3L:20699982-20700102 1.7e-05 81_[+4]_31 chr2R:19273541-19273661 1.7e-05 34_[+4]_78 chr3L:4017780-4017900 3.4e-05 50_[+4]_62 chrX:20713453-20713573 3.4e-05 12_[+4]_100 chr3L:12729724-12729844 3.4e-05 100_[+4]_12 chr3L:15025773-15025893 5.4e-05 111_[+4]_1 chr3L:9152689-9152809 5.4e-05 40_[+4]_72 chr3L:49888-50008 5.4e-05 36_[+4]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGAAAA width=8 seqs=17 chr3L:20629556-20629676 ( 44) TGGGAAAA 1 chr3L:21449677-21449797 ( 52) TGGGAAAA 1 chr3R:6215429-6215549 ( 5) TGGGAAAA 1 chr3R:25469188-25469308 ( 33) TGGGAAAA 1 chrX:18260123-18260243 ( 74) TGGGAAAA 1 chr2L:15485970-15486090 ( 101) TGGGAAAA 1 chr3L:14575787-14575907 ( 100) TGGGAAAA 1 chr3R:13911655-13911775 ( 29) TGGGAAAA 1 chr3R:6860196-6860316 ( 44) TGGGAAAA 1 chr3L:20699982-20700102 ( 82) TGGGAAAA 1 chr2R:19273541-19273661 ( 35) TGGGAAAA 1 chr3L:4017780-4017900 ( 51) TCGGAAAA 1 chrX:20713453-20713573 ( 13) TCGGAAAA 1 chr3L:12729724-12729844 ( 101) TCGGAAAA 1 chr3L:15025773-15025893 ( 112) TGGAAAAA 1 chr3L:9152689-9152809 ( 41) TGGAAAAA 1 chr3L:49888-50008 ( 37) TGGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 2.0e+000 -1073 -1073 -1073 188 -1073 -39 183 -1073 -1073 -1073 212 -1073 -60 -1073 183 -1073 190 -1073 -1073 -1073 190 -1073 -1073 -1073 190 -1073 -1073 -1073 190 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.0e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.176471 0.823529 0.000000 0.000000 0.000000 1.000000 0.000000 0.176471 0.000000 0.823529 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGAAAA MEME-4 regular expression -------------------------------------------------------------------------------- TGGGAAAA -------------------------------------------------------------------------------- Time 25.49 secs. ******************************************************************************** ******************************************************************************** MOTIF MAACAAMA MEME-5 width = 8 sites = 23 llr = 215 E-value = 6.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7aa:aa4a pos.-specific C 3::a::6: probability G :::::::: matrix T :::::::: bits 2.1 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAACA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:25223203-25223323 34 1.98e-05 TTTCTCTTAA AAACAACA AAAAATGTCA chr3R:13911655-13911775 92 1.98e-05 CAAAATAAAT AAACAACA TTTTGACCGG chr2L:9145887-9146007 84 1.98e-05 AAAAGCGCCC AAACAACA CATGTAAGAC chr3R:29576136-29576256 26 1.98e-05 GCGAGGCACA AAACAACA AACAGGAGTC chr3R:21450659-21450779 78 1.98e-05 AGGCGAGGGA AAACAACA ACAAAAAGTG chr3L:13111595-13111715 6 1.98e-05 CAATA AAACAACA ACGGTCTAAA chr3L:14173441-14173561 20 3.68e-05 ACGAAAAGAG CAACAACA ACCCAAACAG chr2R:17386504-17386624 7 3.68e-05 gccggg caacaaca AGAGCTAAAC chr3R:27442728-27442848 3 3.68e-05 AA CAACAACA ATGCGAGTGG chr3L:15025773-15025893 103 3.68e-05 TAATTGCGGC CAACAACA GTGGAAAAAT chr2L:14430555-14430675 89 3.68e-05 agctctgagc CAACAACA TCTGTTGGAA chr3L:5955826-5955946 67 3.68e-05 TGGCCTGGGT CAACAACA TCCTAGCCAA chr3R:26793883-26794003 5 3.68e-05 AGTG CAACAACA TCGCCCCGAT chr2R:22548831-22548951 85 5.98e-05 AAATGGAAAC AAACAAAA GAGCGAAAGG chr3R:8640294-8640414 99 5.98e-05 ACGGCCAGGC AAACAAAA GGCGTCGAAA chr4:826356-826476 104 5.98e-05 AAAAAGGCGC AAACAAAA GGCTGACTG chr2L:4574494-4574614 41 5.98e-05 GGGCACGCAC AAACAAAA CACAATTGGC chr2L:20066976-20067096 98 5.98e-05 CTGGCAACGT AAACAAAA GATGCTGTTT chr3R:13988790-13988910 15 5.98e-05 GAGAAAACAA AAACAAAA AATATGAAAA chr2L:601987-602107 33 5.98e-05 TTTGCTAGAA AAACAAAA CTCctctgcc chr3L:5836026-5836146 50 5.98e-05 ACCGCTCTAA AAACAAAA ACTGACTCCT chr3L:20629556-20629676 59 7.95e-05 AAATGTGTGC CAACAAAA GGCTTATTTA chr3R:10920520-10920640 9 1.02e-04 agagtgtc aaaaaaca cccgggtgcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:25223203-25223323 2e-05 33_[+5]_79 chr3R:13911655-13911775 2e-05 91_[+5]_21 chr2L:9145887-9146007 2e-05 83_[+5]_29 chr3R:29576136-29576256 2e-05 25_[+5]_87 chr3R:21450659-21450779 2e-05 77_[+5]_35 chr3L:13111595-13111715 2e-05 5_[+5]_107 chr3L:14173441-14173561 3.7e-05 19_[+5]_93 chr2R:17386504-17386624 3.7e-05 6_[+5]_106 chr3R:27442728-27442848 3.7e-05 2_[+5]_110 chr3L:15025773-15025893 3.7e-05 102_[+5]_10 chr2L:14430555-14430675 3.7e-05 88_[+5]_24 chr3L:5955826-5955946 3.7e-05 66_[+5]_46 chr3R:26793883-26794003 3.7e-05 4_[+5]_108 chr2R:22548831-22548951 6e-05 84_[+5]_28 chr3R:8640294-8640414 6e-05 98_[+5]_14 chr4:826356-826476 6e-05 103_[+5]_9 chr2L:4574494-4574614 6e-05 40_[+5]_72 chr2L:20066976-20067096 6e-05 97_[+5]_15 chr3R:13988790-13988910 6e-05 14_[+5]_98 chr2L:601987-602107 6e-05 32_[+5]_80 chr3L:5836026-5836146 6e-05 49_[+5]_63 chr3L:20629556-20629676 8e-05 58_[+5]_54 chr3R:10920520-10920640 0.0001 8_[+5]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAACAAMA width=8 seqs=23 chr2R:25223203-25223323 ( 34) AAACAACA 1 chr3R:13911655-13911775 ( 92) AAACAACA 1 chr2L:9145887-9146007 ( 84) AAACAACA 1 chr3R:29576136-29576256 ( 26) AAACAACA 1 chr3R:21450659-21450779 ( 78) AAACAACA 1 chr3L:13111595-13111715 ( 6) AAACAACA 1 chr3L:14173441-14173561 ( 20) CAACAACA 1 chr2R:17386504-17386624 ( 7) CAACAACA 1 chr3R:27442728-27442848 ( 3) CAACAACA 1 chr3L:15025773-15025893 ( 103) CAACAACA 1 chr2L:14430555-14430675 ( 89) CAACAACA 1 chr3L:5955826-5955946 ( 67) CAACAACA 1 chr3R:26793883-26794003 ( 5) CAACAACA 1 chr2R:22548831-22548951 ( 85) AAACAAAA 1 chr3R:8640294-8640414 ( 99) AAACAAAA 1 chr4:826356-826476 ( 104) AAACAAAA 1 chr2L:4574494-4574614 ( 41) AAACAAAA 1 chr2L:20066976-20067096 ( 98) AAACAAAA 1 chr3R:13988790-13988910 ( 15) AAACAAAA 1 chr2L:601987-602107 ( 33) AAACAAAA 1 chr3L:5836026-5836146 ( 50) AAACAAAA 1 chr3L:20629556-20629676 ( 59) CAACAAAA 1 chr3R:10920520-10920640 ( 9) AAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 6.0e+000 128 59 -1117 -1117 190 -1117 -1117 -1117 190 -1117 -1117 -1117 -262 205 -1117 -1117 190 -1117 -1117 -1117 190 -1117 -1117 -1117 55 140 -1117 -1117 190 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.0e+000 0.652174 0.347826 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.043478 0.956522 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.391304 0.608696 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAMA MEME-5 regular expression -------------------------------------------------------------------------------- [AC]AACAA[CA]A -------------------------------------------------------------------------------- Time 31.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30856735-30856855 3.99e-02 28_[+1(2.00e-05)]_84 chr3L:14582857-14582977 1.80e-01 30_[+2(2.09e-05)]_82 chr3R:28596500-28596620 4.06e-02 28_[+2(7.46e-05)]_74_[+2(2.09e-05)]_\ 2 chr3R:6663406-6663526 3.14e-03 42_[+2(2.09e-05)]_4_[+3(1.80e-05)]_\ 58 chr3L:5836026-5836146 3.91e-02 49_[+5(5.98e-05)]_63 chr2R:6523678-6523798 4.05e-03 76_[+2(7.46e-05)]_36 chr3L:13111595-13111715 2.10e-02 5_[+5(1.98e-05)]_107 chr2L:3608509-3608629 1.75e-01 97_[+2(2.09e-05)]_15 chrX:2431243-2431363 1.71e-01 120 chr2R:13448003-13448123 3.73e-01 120 chr2L:28022-28142 1.28e-01 120 chrX:9691246-9691366 1.83e-01 81_[+1(3.72e-05)]_31 chrX:6604172-6604292 3.09e-03 [+4(7.44e-05)]_112 chr3R:13879842-13879962 6.95e-01 120 chr3L:6818373-6818493 4.55e-02 41_[+3(1.80e-05)]_71 chr3L:373912-374032 8.66e-02 38_[+1(5.43e-05)]_74 chr3L:49888-50008 2.68e-03 36_[+4(5.45e-05)]_76 chr3R:29586851-29586971 1.92e-02 20_[+2(5.67e-05)]_92 chr3R:14604122-14604242 1.28e-01 120 chr3R:21450659-21450779 3.58e-03 77_[+5(1.98e-05)]_35 chrX:381660-381780 2.63e-02 26_[+2(3.87e-05)]_86 chr3R:5720888-5721008 7.28e-02 31_[+2(3.87e-05)]_81 chr2L:21190958-21191078 8.12e-01 120 chr2R:9986360-9986480 9.68e-02 120 chr2R:19273541-19273661 2.34e-04 34_[+4(1.72e-05)]_44_[+1(7.15e-05)]_\ 1_[+1(2.00e-05)]_17 chr3L:23230615-23230735 8.05e-02 120 chr3R:13911453-13911573 7.84e-01 120 chr2L:5877717-5877837 3.41e-01 120 chr2L:3819929-3820049 2.83e-01 120 chr3R:4854372-4854492 9.83e-01 120 chr3R:13894895-13895015 8.94e-02 107_[+2(3.87e-05)]_5 chr3R:23039752-23039872 2.67e-01 120 chr3R:29546567-29546687 3.38e-02 74_[+1(2.00e-05)]_38 chr3L:9804264-9804384 4.51e-03 31_[+2(2.09e-05)]_[+2(7.46e-05)]_19_\ [+1(9.50e-05)]_46 chr3R:6544920-6545040 2.45e-01 120 chr2L:12092180-12092300 9.19e-02 120 chr3L:22364467-22364587 3.11e-01 120 chr2L:6250455-6250575 9.62e-03 72_[+2(2.09e-05)]_40 chr2L:12089284-12089404 1.86e-02 90_[+2(2.09e-05)]_22 chr3R:14462248-14462368 6.24e-01 120 chr2L:17739567-17739687 2.60e-02 35_[+2(2.09e-05)]_77 chr2L:601987-602107 3.52e-03 32_[+5(5.98e-05)]_5_[+2(8.99e-05)]_\ 67 chr3R:30861709-30861829 7.23e-01 120 chrX:20663631-20663751 2.98e-01 120 chr3L:4753707-4753827 2.52e-01 120 chr3L:16561668-16561788 4.30e-04 14_[+3(7.25e-05)]_16_[+2(7.46e-05)]_\ 74 chr3R:17831110-17831230 4.75e-01 120 chr2R:15099838-15099958 4.45e-01 120 chr3L:12729724-12729844 2.16e-02 100_[+4(3.45e-05)]_12 chr3L:20699982-20700102 2.35e-02 81_[+4(1.72e-05)]_31 chr3R:10920320-10920440 1.97e-02 120 chr3L:15313336-15313456 1.60e-03 6_[+1(2.00e-05)]_106 chrX:20713453-20713573 1.20e-02 12_[+4(3.45e-05)]_100 chr3R:4352506-4352626 1.59e-02 61_[+1(2.00e-05)]_51 chr3R:13988790-13988910 2.63e-02 8_[+5(5.98e-05)]_104 chrX:2434562-2434682 5.35e-01 120 chrX:20734600-20734720 5.86e-01 120 chr3L:10277828-10277948 3.73e-02 30_[+3(5.45e-05)]_5_[+3(5.45e-05)]_\ 22_[+3(8.79e-05)]_39 chr3R:30851038-30851158 2.98e-01 120 chr3R:29516669-29516789 5.91e-01 120 chr3R:22052348-22052468 1.18e-01 120 chr3R:28574499-28574619 3.94e-02 120 chr3R:24553060-24553180 3.76e-01 120 chr4:509986-510106 3.59e-01 120 chr3R:10618696-10618816 1.93e-02 49_[+1(7.15e-05)]_63 chr3R:23138576-23138696 9.37e-02 120 chr3L:14663907-14664027 1.88e-01 120 chrX:20691363-20691483 9.09e-03 104_[+2(2.09e-05)]_8 chr3L:16018086-16018206 4.70e-01 120 chr3R:13882482-13882602 6.06e-01 120 chr2L:9827821-9827941 7.10e-02 59_[+2(5.67e-05)]_53 chrX:20736252-20736372 3.12e-02 95_[+1(2.00e-05)]_17 chr2L:18917748-18917868 2.08e-02 18_[+3(5.45e-05)]_94 chr3R:10916239-10916359 7.37e-01 120 chr3R:29576136-29576256 9.83e-04 25_[+5(1.98e-05)]_41_[+1(2.00e-05)]_\ 38 chr3L:13615244-13615364 4.34e-02 120 chr2L:356336-356456 3.33e-01 120 chr2R:21849197-21849317 5.82e-03 120 chrX:4456719-4456839 3.72e-01 120 chr3R:6860196-6860316 1.90e-04 43_[+4(1.72e-05)]_54_[+2(2.09e-05)]_\ 7 chr2L:1401963-1402083 7.85e-02 41_[+3(1.80e-05)]_63_[+3(1.80e-05)] chrX:7221267-7221387 8.87e-01 120 chrX:9736883-9737003 3.30e-01 120 chr3R:29258487-29258607 1.94e-01 65_[+2(5.67e-05)]_47 chr3R:26793883-26794003 3.93e-03 4_[+5(3.68e-05)]_108 chrX:19787008-19787128 6.30e-02 16_[+3(8.79e-05)]_96 chr3L:13177920-13178040 1.33e-01 120 chr2L:4281482-4281602 1.11e-01 120 chr3R:8694663-8694783 1.91e-01 120 chr4:983397-983517 7.44e-02 120 chr3L:14581525-14581645 1.85e-02 60_[+3(1.80e-05)]_52 chr3L:22066927-22067047 6.46e-01 120 chr3L:15954008-15954128 1.58e-02 75_[+3(5.45e-05)]_37 chr3R:10920520-10920640 3.26e-02 120 chr3L:11035132-11035252 3.60e-01 120 chr3R:13893788-13893908 4.03e-03 120 chr3R:3843861-3843981 3.54e-01 120 chr2L:20066976-20067096 1.49e-02 97_[+5(5.98e-05)]_15 chrX:7582488-7582608 4.01e-02 45_[+3(8.79e-05)]_67 chr2L:5392183-5392303 4.47e-02 56_[+3(1.80e-05)]_6_[+3(1.80e-05)]_\ 42 chr2L:7311580-7311700 9.58e-01 120 chr2L:9145887-9146007 2.35e-03 69_[+5(5.98e-05)]_6_[+5(1.98e-05)]_\ 29 chr2L:3005598-3005718 1.49e-01 120 chr2L:16845309-16845429 5.78e-01 120 chr2L:7300123-7300243 2.55e-02 53_[+1(2.00e-05)]_59 chr3R:13911655-13911775 4.81e-04 28_[+4(1.72e-05)]_55_[+5(1.98e-05)]_\ 21 chr3R:15579526-15579646 4.56e-02 40_[+3(1.80e-05)]_72 chr3R:13895094-13895214 3.60e-01 120 chr3L:9152689-9152809 8.48e-03 40_[+4(5.45e-05)]_72 chr2R:24931231-24931351 7.35e-01 120 chr3L:15313538-15313658 1.70e-01 12_[+3(5.45e-05)]_100 chr3R:31329344-31329464 1.63e-01 2_[+1(9.50e-05)]_110 chr3R:8307628-8307748 2.27e-01 120 chr2R:22256271-22256391 4.26e-01 120 chr2L:8145519-8145639 8.59e-01 120 chr2R:11566896-11567016 2.42e-01 26_[+1(3.72e-05)]_86 chr2L:4574494-4574614 1.70e-01 40_[+5(5.98e-05)]_72 chr3L:20697732-20697852 1.06e-03 105_[+2(3.87e-05)]_7 chr3L:4017780-4017900 4.76e-03 50_[+4(3.45e-05)]_62 chr2L:3829338-3829458 5.76e-01 120 chr2L:7304828-7304948 7.04e-02 120 chr3R:8284283-8284403 1.52e-01 95_[+1(5.43e-05)]_17 chr2R:25069896-25070016 5.75e-02 120 chrX:20680746-20680866 3.17e-01 120 chrX:9468118-9468238 2.41e-04 3_[+1(5.43e-05)]_52_[+2(8.99e-05)]_\ 49 chrX:6857374-6857494 5.63e-03 18_[+1(2.00e-05)]_94 chrX:380535-380655 2.62e-01 120 chr2L:7291795-7291915 4.60e-01 120 chr3L:7031071-7031191 2.78e-01 79_[+1(7.15e-05)]_33 chrX:7039289-7039409 4.01e-02 120 chrX:584185-584305 3.39e-02 120 chr3R:6421442-6421562 3.96e-02 101_[+1(3.72e-05)]_11 chr3R:24397509-24397629 2.10e-02 120 chr2R:20083070-20083190 2.02e-02 120 chr2R:20631338-20631458 3.45e-02 5_[+3(1.80e-05)]_107 chr4:846207-846327 9.71e-01 120 chr2R:11537446-11537566 4.63e-01 120 chr3L:10648849-10648969 1.38e-01 120 chr3R:16951591-16951711 3.52e-01 120 chr4:826356-826476 3.21e-03 60_[+3(5.45e-05)]_35_[+5(5.98e-05)]_\ 9 chr3R:16936428-16936548 6.11e-02 50_[+1(7.15e-05)]_62 chr2L:15313662-15313782 3.44e-01 120 chr3R:23129729-23129849 1.94e-01 32_[+2(8.99e-05)]_80 chrX:20724821-20724941 1.63e-01 120 chr2R:17830371-17830491 9.08e-02 31_[+2(2.09e-05)]_81 chr3R:10668068-10668188 3.20e-01 120 chr2R:12206113-12206233 4.49e-03 37_[+2(7.46e-05)]_34_[+3(1.80e-05)]_\ 33 chr2R:8641048-8641168 8.65e-03 25_[+2(2.09e-05)]_87 chr3L:21449475-21449595 2.29e-01 120 chr3R:8640294-8640414 8.65e-03 98_[+5(5.98e-05)]_14 chr3R:6857821-6857941 2.07e-01 120 chrX:20663299-20663419 4.40e-01 120 chr2R:11800130-11800250 1.86e-01 120 chr3R:16731587-16731707 5.57e-02 66_[+2(8.99e-05)]_1_[+2(8.99e-05)]_\ 9_[+2(7.46e-05)]_20 chr3L:14153824-14153944 2.98e-01 120 chr3R:30157479-30157599 2.26e-01 120 chr3R:30849910-30850030 2.00e-02 120 chr3L:14575787-14575907 3.57e-05 71_[+2(2.09e-05)]_11_[+1(2.00e-05)]_\ 1_[+4(1.72e-05)]_13 chr3R:13936443-13936563 4.29e-02 14_[+1(5.43e-05)]_98 chr3R:23134070-23134190 1.83e-03 109_[+2(5.67e-05)]_3 chrX:7571804-7571924 8.21e-01 120 chr3L:735453-735573 7.65e-01 120 chr2L:12087547-12087667 4.18e-01 120 chr3L:4757669-4757789 5.82e-02 120 chr2R:25225442-25225562 5.81e-02 61_[+1(2.00e-05)]_51 chr3L:18012921-18013041 1.96e-02 120 chr3L:21482220-21482340 1.11e-01 1_[+3(7.25e-05)]_111 chr2R:22238500-22238620 1.24e-03 60_[+2(2.09e-05)]_52 chr3R:26887292-26887412 4.86e-03 64_[+1(7.15e-05)]_48 chr2L:21040858-21040978 4.40e-02 120 chr3L:3516491-3516611 5.22e-01 120 chr3L:22067819-22067939 7.81e-01 120 chrX:20680546-20680666 5.80e-03 103_[+2(2.09e-05)]_9 chrX:8776641-8776761 2.70e-02 5_[+2(2.09e-05)]_107 chr2L:590075-590195 1.98e-02 120 chr2R:20037276-20037396 3.76e-01 120 chr3L:18173776-18173896 4.87e-01 120 chr3R:16911894-16912014 1.76e-01 63_[+1(9.50e-05)]_49 chrX:18304524-18304644 3.36e-01 120 chr2L:15485970-15486090 2.13e-03 28_[+1(5.43e-05)]_64_[+4(1.72e-05)]_\ 12 chrX:18668392-18668512 1.89e-02 120 chr3L:5955826-5955946 6.44e-03 18_[+3(8.79e-05)]_40_[+5(3.68e-05)]_\ 46 chrX:18260123-18260243 3.26e-02 73_[+4(1.72e-05)]_39 chr3R:30266920-30267040 1.39e-02 84_[+2(2.09e-05)]_28 chr2R:20897783-20897903 3.78e-01 120 chr3R:13811929-13812049 8.96e-01 120 chr3R:21863419-21863539 1.18e-01 120 chr2R:10465850-10465970 2.25e-01 120 chr2L:15741137-15741257 4.27e-03 81_[+4(7.44e-05)]_31 chr2L:14430555-14430675 3.56e-03 88_[+5(3.68e-05)]_24 chr3R:26256194-26256314 6.11e-01 120 chr3R:13878753-13878873 9.20e-01 120 chr2R:12460662-12460782 7.05e-02 3_[+3(5.45e-05)]_109 chr2R:14817278-14817398 2.47e-02 103_[+2(3.87e-05)]_9 chr3R:22044582-22044702 9.81e-03 43_[+1(5.43e-05)]_7_[+1(2.00e-05)]_\ 54 chrX:16203388-16203508 4.06e-01 120 chr3R:8307422-8307542 1.32e-01 120 chr3R:25469188-25469308 6.40e-02 32_[+4(1.72e-05)]_80 chrX:13647507-13647627 2.45e-02 6_[+3(8.79e-05)]_106 chr2R:14800326-14800446 1.49e-02 101_[+2(2.09e-05)]_11 chr2R:22548831-22548951 8.98e-03 10_[+1(9.50e-05)]_66_[+5(5.98e-05)]_\ 28 chrX:17368664-17368784 1.78e-02 90_[+2(3.87e-05)]_22 chr2R:20859631-20859751 5.36e-01 120 chr3R:9596132-9596252 1.26e-01 40_[+1(2.00e-05)]_72 chr2L:9186749-9186869 4.59e-02 11_[+3(5.45e-05)]_101 chr3L:15025773-15025893 1.04e-02 102_[+5(3.68e-05)]_1_[+4(5.45e-05)]_\ 1 chr3R:21458568-21458688 3.30e-01 120 chrX:17324389-17324509 7.77e-01 120 chr2R:20168596-20168716 3.10e-02 120 chrX:593062-593182 5.35e-02 81_[+1(9.50e-05)]_31 chr3R:6731868-6731988 5.66e-02 50_[+1(3.72e-05)]_62 chr2R:8654921-8655041 3.73e-01 120 chr2L:3071950-3072070 3.03e-01 120 chr2L:5412698-5412818 2.22e-02 120 chr3L:10763821-10763941 6.14e-01 120 chr3R:25195237-25195357 3.40e-02 120 chr2L:12616391-12616511 2.45e-01 120 chr3L:20684757-20684877 1.63e-02 78_[+1(2.00e-05)]_34 chr3R:27442728-27442848 2.89e-02 2_[+5(3.68e-05)]_110 chr2L:183359-183479 6.11e-01 120 chr3R:6215429-6215549 2.65e-05 4_[+4(1.72e-05)]_108 chr2R:15756498-15756618 6.19e-03 26_[+3(5.45e-05)]_86 chr2R:6627360-6627480 2.23e-01 91_[+3(5.45e-05)]_21 chr2R:6823542-6823662 1.75e-03 73_[+1(2.00e-05)]_28_[+3(5.45e-05)]_\ 3 chr2R:25223203-25223323 1.96e-03 14_[+1(3.72e-05)]_11_[+5(1.98e-05)]_\ 79 chr2R:15325088-15325208 9.85e-02 120 chr2R:13567858-13567978 2.17e-01 120 chr2L:588067-588187 1.54e-02 69_[+1(2.00e-05)]_43 chr3R:13928681-13928801 9.19e-03 45_[+2(8.99e-05)]_67 chr3R:16033071-16033191 1.25e-01 21_[+2(3.87e-05)]_91 chr2R:17386504-17386624 2.15e-04 6_[+5(3.68e-05)]_34_[+1(7.15e-05)]_\ 22_[+2(2.09e-05)]_34 chrX:18304324-18304444 2.46e-01 120 chr3L:21477977-21478097 2.05e-03 14_[+2(2.09e-05)]_98 chr3R:13293759-13293879 8.45e-03 [+1(9.50e-05)]_112 chr3R:21427013-21427133 6.44e-01 120 chr3R:5684272-5684392 3.28e-02 76_[+2(2.09e-05)]_36 chr2L:8789353-8789473 8.13e-03 92_[+1(2.00e-05)]_3_[+3(5.45e-05)]_\ 9 chr3L:21449677-21449797 1.50e-02 51_[+4(1.72e-05)]_61 chr3L:20629556-20629676 1.72e-03 43_[+4(1.72e-05)]_7_[+5(7.95e-05)]_\ 54 chr2R:11532631-11532751 1.17e-01 120 chr2L:21066935-21067055 1.30e-01 7_[+2(5.67e-05)]_105 chr3L:8666261-8666381 1.88e-01 120 chr3R:5240844-5240964 2.01e-02 91_[+3(1.80e-05)]_21 chr2R:16155355-16155475 5.59e-01 120 chr3L:14173441-14173561 2.10e-01 19_[+5(3.68e-05)]_93 chr3L:2477086-2477206 2.94e-02 49_[+1(7.15e-05)]_63 chr2L:20784555-20784675 1.16e-01 100_[+2(2.09e-05)]_12 chr3R:30755327-30755447 9.12e-01 120 chrX:16204754-16204874 3.97e-01 120 chr2L:3893456-3893576 9.38e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************