******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tio.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4699954-4700074 1.0000 120 chr2R:13614204-13614324 1.0000 120 chr2R:2566989-2567109 1.0000 120 chrX:8196365-8196485 1.0000 120 chr3R:13660913-13661033 1.0000 120 chr3L:10818403-10818523 1.0000 120 chr2L:1218199-1218319 1.0000 120 chrX:23096959-23097079 1.0000 120 chr3L:9125974-9126094 1.0000 120 chr3R:25519978-25520098 1.0000 120 chr3L:7862845-7862965 1.0000 120 chr2L:19629383-19629503 1.0000 120 chr3R:14586592-14586712 1.0000 120 chr3L:13262476-13262596 1.0000 120 chr2R:17870020-17870140 1.0000 120 chr2R:13028944-13029064 1.0000 120 chr3R:6664922-6665042 1.0000 120 chrX:13320712-13320832 1.0000 120 chr3L:17948761-17948881 1.0000 120 chr3L:20827353-20827473 1.0000 120 chr3R:22668687-22668807 1.0000 120 chr2L:22036940-22037060 1.0000 120 chr2R:6870726-6870846 1.0000 120 chr3L:20710690-20710810 1.0000 120 chr3R:15468487-15468607 1.0000 120 chr3L:1349043-1349163 1.0000 120 chr2L:2032101-2032221 1.0000 120 chr2R:7109485-7109605 1.0000 120 chr2R:10347811-10347931 1.0000 120 chrX:19884349-19884469 1.0000 120 chr3L:13903914-13904034 1.0000 120 chr2L:10061378-10061498 1.0000 120 chr3L:3930900-3931020 1.0000 120 chr2L:20936557-20936677 1.0000 120 chr3L:12590331-12590451 1.0000 120 chr2L:4084403-4084523 1.0000 120 chr2L:1558058-1558178 1.0000 120 chr2L:7757013-7757133 1.0000 120 chr2R:10551098-10551218 1.0000 120 chr2R:6589399-6589519 1.0000 120 chr3L:9125763-9125883 1.0000 120 chr2R:13617970-13618090 1.0000 120 chrX:3297683-3297803 1.0000 120 chr2L:9996693-9996813 1.0000 120 chr3R:16241885-16242005 1.0000 120 chr3R:16215093-16215213 1.0000 120 chr3L:15203239-15203359 1.0000 120 chr3L:17009707-17009827 1.0000 120 chr3L:19905621-19905741 1.0000 120 chr2L:20944436-20944556 1.0000 120 chr3L:3449854-3449974 1.0000 120 chr2R:1345235-1345355 1.0000 120 chr3R:28327269-28327389 1.0000 120 chr2L:6210984-6211104 1.0000 120 chr3L:3802191-3802311 1.0000 120 chr3L:21056317-21056437 1.0000 120 chr2L:14995185-14995305 1.0000 120 chr3L:11347060-11347180 1.0000 120 chr2R:20529458-20529578 1.0000 120 chr3R:13984402-13984522 1.0000 120 chr2L:19800084-19800204 1.0000 120 chr2L:309288-309408 1.0000 120 chr3L:15847852-15847972 1.0000 120 chr3L:11278725-11278845 1.0000 120 chr2L:20823313-20823433 1.0000 120 chr3R:22526390-22526510 1.0000 120 chrX:18141500-18141620 1.0000 120 chr3R:22358107-22358227 1.0000 120 chr3L:10796064-10796184 1.0000 120 chr2L:493387-493507 1.0000 120 chr3L:21585542-21585662 1.0000 120 chr3L:24352746-24352866 1.0000 120 chr3L:11246840-11246960 1.0000 120 chr2L:8099824-8099944 1.0000 120 chr2L:19019174-19019294 1.0000 120 chr3R:14285730-14285850 1.0000 120 chrX:17582078-17582198 1.0000 120 chr3R:25623989-25624109 1.0000 120 chrX:18919663-18919783 1.0000 120 chr2R:10568218-10568338 1.0000 120 chr2L:6819594-6819714 1.0000 120 chr3L:5188491-5188611 1.0000 120 chr3R:21348048-21348168 1.0000 120 chr3R:24100573-24100693 1.0000 120 chr3L:14328518-14328638 1.0000 120 chr2R:5127037-5127157 1.0000 120 chr3L:11278932-11279052 1.0000 120 chr2R:1000151-1000271 1.0000 120 chrX:3358973-3359093 1.0000 120 chr2R:7141920-7142040 1.0000 120 chr3R:10656136-10656256 1.0000 120 chr3L:4413431-4413551 1.0000 120 chr2L:5209854-5209974 1.0000 120 chr3R:29524450-29524570 1.0000 120 chr3R:30775440-30775560 1.0000 120 chr3R:28959283-28959403 1.0000 120 chr3R:12543013-12543133 1.0000 120 chr2R:12537628-12537748 1.0000 120 chr3L:13949851-13949971 1.0000 120 chrX:1279147-1279267 1.0000 120 chr3L:12097398-12097518 1.0000 120 chr2R:11176357-11176477 1.0000 120 chrX:18125579-18125699 1.0000 120 chrX:9004473-9004593 1.0000 120 chr3R:19093426-19093546 1.0000 120 chr2L:16498198-16498318 1.0000 120 chrX:12724793-12724913 1.0000 120 chr3R:18914333-18914453 1.0000 120 chr2L:1619235-1619355 1.0000 120 chr2R:8859939-8860059 1.0000 120 chr2L:12529147-12529267 1.0000 120 chr2L:3779120-3779240 1.0000 120 chr3R:21188191-21188311 1.0000 120 chr3L:4000927-4001047 1.0000 120 chrX:17499095-17499215 1.0000 120 chr2L:7443042-7443162 1.0000 120 chr2L:18694844-18694964 1.0000 120 chr3R:19151994-19152114 1.0000 120 chr3L:908612-908732 1.0000 120 chr3L:12062381-12062501 1.0000 120 chr2R:14971246-14971366 1.0000 120 chr3R:20311050-20311170 1.0000 120 chr3L:13022937-13023057 1.0000 120 chr2R:23003266-23003386 1.0000 120 chr3L:11556631-11556751 1.0000 120 chr3R:10111785-10111905 1.0000 120 chr2R:23154626-23154746 1.0000 120 chr3L:1464534-1464654 1.0000 120 chr3L:7861973-7862093 1.0000 120 chr3L:11379933-11380053 1.0000 120 chr3R:4232634-4232754 1.0000 120 chr3L:11336566-11336686 1.0000 120 chr2L:15039109-15039229 1.0000 120 chr3R:16510210-16510330 1.0000 120 chr3L:10849680-10849800 1.0000 120 chr3R:14691558-14691678 1.0000 120 chr3L:14166387-14166507 1.0000 120 chr3L:10337768-10337888 1.0000 120 chr2L:6540203-6540323 1.0000 120 chr2L:15392542-15392662 1.0000 120 chr2R:16847100-16847220 1.0000 120 chr3L:1320766-1320886 1.0000 120 chr3L:11003073-11003193 1.0000 120 chr3L:6969295-6969415 1.0000 120 chr4:663255-663375 1.0000 120 chrX:13307444-13307564 1.0000 120 chr3R:4732326-4732446 1.0000 120 chr2R:22738034-22738154 1.0000 120 chr3L:21738544-21738664 1.0000 120 chr3L:4355312-4355432 1.0000 120 chr3R:14002095-14002215 1.0000 120 chr2L:1316572-1316692 1.0000 120 chr3R:26235201-26235321 1.0000 120 chrX:3109104-3109224 1.0000 120 chr3R:18167406-18167526 1.0000 120 chr3R:27988651-27988771 1.0000 120 chrX:14583358-14583478 1.0000 120 chr2R:6770118-6770238 1.0000 120 chr2L:1655914-1656034 1.0000 120 chr3L:21463074-21463194 1.0000 120 chrX:16580040-16580160 1.0000 120 chr2R:11044548-11044668 1.0000 120 chr3L:19898932-19899052 1.0000 120 chr2R:9684036-9684156 1.0000 120 chr3L:9468286-9468406 1.0000 120 chr3R:21856772-21856892 1.0000 120 chr2R:1515446-1515566 1.0000 120 chrX:13320914-13321034 1.0000 120 chr3R:6414864-6414984 1.0000 120 chr3L:16657093-16657213 1.0000 120 chr3R:17231629-17231749 1.0000 120 chrX:9106696-9106816 1.0000 120 chr3L:15693111-15693231 1.0000 120 chr3L:16160163-16160283 1.0000 120 chr3R:6760771-6760891 1.0000 120 chr2L:14995386-14995506 1.0000 120 chr3L:16544343-16544463 1.0000 120 chr2L:18566862-18566982 1.0000 120 chr3L:16045506-16045626 1.0000 120 chr3L:11414631-11414751 1.0000 120 chr3R:9494452-9494572 1.0000 120 chr3L:5365160-5365280 1.0000 120 chrX:11081367-11081487 1.0000 120 chr3L:19315088-19315208 1.0000 120 chr3R:11949387-11949507 1.0000 120 chr3L:17506170-17506290 1.0000 120 chr3R:6406193-6406313 1.0000 120 chr3L:20494262-20494382 1.0000 120 chr2L:3805315-3805435 1.0000 120 chrX:8491914-8492034 1.0000 120 chrX:19106976-19107096 1.0000 120 chr2L:11394317-11394437 1.0000 120 chr3L:15672965-15673085 1.0000 120 chrX:3950332-3950452 1.0000 120 chr2L:18150986-18151106 1.0000 120 chr3L:5819471-5819591 1.0000 120 chr2R:1522506-1522626 1.0000 120 chr3L:3544348-3544468 1.0000 120 chr2L:7566772-7566892 1.0000 120 chr3R:16242096-16242216 1.0000 120 chr2R:13999314-13999434 1.0000 120 chr2L:2494652-2494772 1.0000 120 chrX:20508002-20508122 1.0000 120 chr3R:21612952-21613072 1.0000 120 chrX:14213650-14213770 1.0000 120 chrX:19964386-19964506 1.0000 120 chr2L:14619753-14619873 1.0000 120 chrX:10628994-10629114 1.0000 120 chrX:7579940-7580060 1.0000 120 chrX:10324991-10325111 1.0000 120 chr2L:13876843-13876963 1.0000 120 chr3L:15532942-15533062 1.0000 120 chr2R:21706472-21706592 1.0000 120 chr2R:8240762-8240882 1.0000 120 chr2R:19874678-19874798 1.0000 120 chrX:16385996-16386116 1.0000 120 chr3L:1549409-1549529 1.0000 120 chr2R:14136893-14137013 1.0000 120 chr2R:13996767-13996887 1.0000 120 chr2R:13475121-13475241 1.0000 120 chr2R:16096996-16097116 1.0000 120 chr2R:20195292-20195412 1.0000 120 chr3R:17385461-17385581 1.0000 120 chr2R:13015205-13015325 1.0000 120 chrX:17293564-17293684 1.0000 120 chr3L:15199272-15199392 1.0000 120 chr2L:8415459-8415579 1.0000 120 chr2L:20915498-20915618 1.0000 120 chr2R:7076991-7077111 1.0000 120 chr2R:15351466-15351586 1.0000 120 chr3L:775045-775165 1.0000 120 chr3R:13446632-13446752 1.0000 120 chr2R:10160284-10160404 1.0000 120 chr2L:13512366-13512486 1.0000 120 chr2L:9448814-9448934 1.0000 120 chr2R:14137096-14137216 1.0000 120 chr3L:9065100-9065220 1.0000 120 chrX:15120182-15120302 1.0000 120 chr3R:16704359-16704479 1.0000 120 chr3L:16452395-16452515 1.0000 120 chr2R:6157499-6157619 1.0000 120 chr3R:8784928-8785048 1.0000 120 chr3L:16060878-16060998 1.0000 120 chr2L:9775277-9775397 1.0000 120 chr2R:14126327-14126447 1.0000 120 chr2L:22037149-22037269 1.0000 120 chr2L:17778622-17778742 1.0000 120 chrX:19164922-19165042 1.0000 120 chr3R:19339403-19339523 1.0000 120 chrX:19348936-19349056 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tio/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tio.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.342 C 0.159 G 0.155 T 0.344 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.159 G 0.155 T 0.344 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SSCSYGGC MEME-1 width = 8 sites = 18 llr = 178 E-value = 6.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C 44646:2a probability G 66362a8: matrix T ::::3::: bits 2.7 * * 2.4 * * 2.1 * * 1.9 * * Relative 1.6 ** * *** Entropy 1.3 **** *** (14.3 bits) 1.1 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGCGGC consensus CCGCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17231629-17231749 86 3.60e-07 TCGAGTCCGA GGCGCGGC AAGCTTAAGT chr3R:20311050-20311170 58 7.29e-07 TAAAATTGTA GCCGCGGC GAGTTAATAC chr3L:5365160-5365280 46 3.66e-06 TTTTCTGGTT GGCGGGGC AAGAAAGTAC chr2R:5127037-5127157 42 5.91e-06 caaaaatgtg ggcgtggc agtttttggc chr3R:16510210-16510330 29 7.73e-06 TTTGATATTG CCGGCGGC AGGAACAACT chrX:14213650-14213770 13 9.28e-06 CATTTCATGA GCCGCGCC TTAAGATAGG chrX:8491914-8492034 103 1.35e-05 CCCGCATGCG CCGCCGGC CCATATGTAA chr2R:19874678-19874798 112 1.51e-05 GCCAAGAGAG GCCCTGGC C chrX:13307444-13307564 51 1.70e-05 GAACGGTAAT CCCGCGCC TTATCAGCTA chr2R:7109485-7109605 111 1.85e-05 CGTAATTAAG CGCCTGGC CG chr2R:6157499-6157619 63 1.96e-05 AACCTTGATT GGGCGGGC AAGTGGTGCT chr3L:11003073-11003193 33 1.96e-05 CACTCCCCGC CGCCCGCC TCCAGCTGCT chr3L:12062381-12062501 96 1.96e-05 AGTCTGTAAT GGGCGGGC TTCTAGTTTA chr3L:11347060-11347180 77 2.12e-05 TACTCATCGG GGAGCGGC AAATAAGAAC chr3R:15468487-15468607 43 2.27e-05 CTGAATTTTG CCCCTGGC AAAATGAAGC chr3R:19093426-19093546 90 2.54e-05 GCGAAAGCAG CGGGTGGC AACTTTTGGC chr2R:10347811-10347931 69 2.70e-05 CAGTGCAACA GCAGCGGC GCAAAAAACT chr3L:14166387-14166507 11 4.03e-05 ATAATTGACT GGCGCGAC TATCAGATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17231629-17231749 3.6e-07 85_[+1]_27 chr3R:20311050-20311170 7.3e-07 57_[+1]_55 chr3L:5365160-5365280 3.7e-06 45_[+1]_67 chr2R:5127037-5127157 5.9e-06 41_[+1]_71 chr3R:16510210-16510330 7.7e-06 28_[+1]_84 chrX:14213650-14213770 9.3e-06 12_[+1]_100 chrX:8491914-8492034 1.3e-05 102_[+1]_10 chr2R:19874678-19874798 1.5e-05 111_[+1]_1 chrX:13307444-13307564 1.7e-05 50_[+1]_62 chr2R:7109485-7109605 1.9e-05 110_[+1]_2 chr2R:6157499-6157619 2e-05 62_[+1]_50 chr3L:11003073-11003193 2e-05 32_[+1]_80 chr3L:12062381-12062501 2e-05 95_[+1]_17 chr3L:11347060-11347180 2.1e-05 76_[+1]_36 chr3R:15468487-15468607 2.3e-05 42_[+1]_70 chr3R:19093426-19093546 2.5e-05 89_[+1]_23 chr2R:10347811-10347931 2.7e-05 68_[+1]_44 chr3L:14166387-14166507 4e-05 10_[+1]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCSYGGC width=8 seqs=18 chr3R:17231629-17231749 ( 86) GGCGCGGC 1 chr3R:20311050-20311170 ( 58) GCCGCGGC 1 chr3L:5365160-5365280 ( 46) GGCGGGGC 1 chr2R:5127037-5127157 ( 42) GGCGTGGC 1 chr3R:16510210-16510330 ( 29) CCGGCGGC 1 chrX:14213650-14213770 ( 13) GCCGCGCC 1 chrX:8491914-8492034 ( 103) CCGCCGGC 1 chr2R:19874678-19874798 ( 112) GCCCTGGC 1 chrX:13307444-13307564 ( 51) CCCGCGCC 1 chr2R:7109485-7109605 ( 111) CGCCTGGC 1 chr2R:6157499-6157619 ( 63) GGGCGGGC 1 chr3L:11003073-11003193 ( 33) CGCCCGCC 1 chr3L:12062381-12062501 ( 96) GGGCGGGC 1 chr3L:11347060-11347180 ( 77) GGAGCGGC 1 chr3R:15468487-15468607 ( 43) CCCCTGGC 1 chr3R:19093426-19093546 ( 90) CGGGTGGC 1 chr2R:10347811-10347931 ( 69) GCAGCGGC 1 chr3L:14166387-14166507 ( 11) GGCGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 6.8e+000 -1081 129 198 -1081 -1081 149 184 -1081 -162 195 84 -1081 -1081 129 198 -1081 -1081 181 10 -31 -1081 -1081 269 -1081 -262 7 232 -1081 -1081 266 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.8e+000 0.000000 0.388889 0.611111 0.000000 0.000000 0.444444 0.555556 0.000000 0.111111 0.611111 0.277778 0.000000 0.000000 0.388889 0.611111 0.000000 0.000000 0.555556 0.166667 0.277778 0.000000 0.000000 1.000000 0.000000 0.055556 0.166667 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCSYGGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC][GC][CG][GC][CT]GGC -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGTGCSC MEME-2 width = 8 sites = 2 llr = 27 E-value = 2.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::::a5a probability G :aa:a:5: matrix T :::a:::: bits 2.7 *** ** * 2.4 *** ** * 2.1 *** ** * 1.9 *** ** * Relative 1.6 ******** Entropy 1.3 ******** (19.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGTGCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8491914-8492034 61 1.62e-06 TTAACAGTAG CGGTGCCC ACAGTGGCGG chr2L:6210984-6211104 16 1.62e-06 TGTTTATTTA CGGTGCGC TTGGCGGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8491914-8492034 1.6e-06 60_[+2]_52 chr2L:6210984-6211104 1.6e-06 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGTGCSC width=8 seqs=2 chrX:8491914-8492034 ( 61) CGGTGCCC 1 chr2L:6210984-6211104 ( 16) CGGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.2e+004 -765 265 -765 -765 -765 -765 268 -765 -765 -765 268 -765 -765 -765 -765 153 -765 -765 268 -765 -765 265 -765 -765 -765 165 168 -765 -765 265 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGTGCSC MEME-2 regular expression -------------------------------------------------------------------------------- CGGTGC[CG]C -------------------------------------------------------------------------------- Time 13.69 secs. ******************************************************************************** ******************************************************************************** MOTIF STGGCGSC MEME-3 width = 8 sites = 4 llr = 51 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5:::a:5a probability G 5:aa:a5: matrix T :a:::::: bits 2.7 **** * 2.4 **** * 2.1 **** * 1.9 **** * Relative 1.6 ******** Entropy 1.3 ******** (18.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGGCGCC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13876843-13876963 71 3.19e-06 GAGACATTAA CTGGCGCC ACAAATATTT chr2R:1522506-1522626 59 3.19e-06 actgtaagtt gtggcgcc aattcacata chrX:8491914-8492034 72 3.19e-06 GGTGCCCACA GTGGCGGC GAGAAAAATG chr2R:7109485-7109605 84 3.19e-06 CCAATATTGA CTGGCGGC TACTTAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13876843-13876963 3.2e-06 70_[+3]_42 chr2R:1522506-1522626 3.2e-06 58_[+3]_54 chrX:8491914-8492034 3.2e-06 71_[+3]_41 chr2R:7109485-7109605 3.2e-06 83_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGGCGSC width=8 seqs=4 chr2L:13876843-13876963 ( 71) CTGGCGCC 1 chr2R:1522506-1522626 ( 59) GTGGCGCC 1 chrX:8491914-8492034 ( 72) GTGGCGGC 1 chr2R:7109485-7109605 ( 84) CTGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 5.6e+003 -865 165 168 -865 -865 -865 -865 154 -865 -865 268 -865 -865 -865 268 -865 -865 265 -865 -865 -865 -865 268 -865 -865 165 168 -865 -865 265 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.6e+003 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGGCGSC MEME-3 regular expression -------------------------------------------------------------------------------- [CG]TGGCG[CG]C -------------------------------------------------------------------------------- Time 19.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GTSGGCGG MEME-4 width = 8 sites = 2 llr = 27 E-value = 8.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::5::a:: probability G a:5aa:aa matrix T :a:::::: bits 2.7 * ***** 2.4 * ***** 2.1 * ***** 1.9 * ***** Relative 1.6 ******** Entropy 1.3 ******** (19.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTCGGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17499095-17499215 3 1.54e-06 CT GTCGGCGG AATTTTAATT chr3L:3802191-3802311 108 1.54e-06 CGACCGAATT GTGGGCGG ACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17499095-17499215 1.5e-06 2_[+4]_110 chr3L:3802191-3802311 1.5e-06 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTSGGCGG width=8 seqs=2 chrX:17499095-17499215 ( 3) GTCGGCGG 1 chr3L:3802191-3802311 ( 108) GTGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 8.4e+003 -765 -765 268 -765 -765 -765 -765 153 -765 165 168 -765 -765 -765 268 -765 -765 -765 268 -765 -765 265 -765 -765 -765 -765 268 -765 -765 -765 268 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTSGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- GT[CG]GGCGG -------------------------------------------------------------------------------- Time 26.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCYCCC MEME-5 width = 8 sites = 4 llr = 52 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a8a5aaa probability G a:3::::: matrix T ::::5::: bits 2.7 ** * *** 2.4 ** * *** 2.1 ** * *** 1.9 **** *** Relative 1.6 **** *** Entropy 1.3 **** *** (18.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCCCCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1558058-1558178 112 3.98e-07 ATGCAATTTG GCCCCCCC T chr2R:14137096-14137216 103 1.26e-06 CAATACAACC GCCCTCCC CTTGCGCACA chr3L:13903914-13904034 44 1.26e-06 AAGGGTCATT GCCCTCCC AAATTTAAAT chr3R:4732326-4732446 28 1.65e-06 CATCAGGATA GCGCCCCC TACGATAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1558058-1558178 4e-07 111_[+5]_1 chr2R:14137096-14137216 1.3e-06 102_[+5]_10 chr3L:13903914-13904034 1.3e-06 43_[+5]_69 chr3R:4732326-4732446 1.6e-06 27_[+5]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCYCCC width=8 seqs=4 chr2L:1558058-1558178 ( 112) GCCCCCCC 1 chr2R:14137096-14137216 ( 103) GCCCTCCC 1 chr3L:13903914-13904034 ( 44) GCCCTCCC 1 chr3R:4732326-4732446 ( 28) GCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.8e+003 -865 -865 268 -865 -865 265 -865 -865 -865 224 69 -865 -865 265 -865 -865 -865 165 -865 54 -865 265 -865 -865 -865 265 -865 -865 -865 265 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCYCCC MEME-5 regular expression -------------------------------------------------------------------------------- GC[CG]C[CT]CCC -------------------------------------------------------------------------------- Time 32.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4699954-4700074 1.00e+00 120 chr2R:13614204-13614324 5.74e-01 120 chr2R:2566989-2567109 1.37e-01 120 chrX:8196365-8196485 5.67e-01 120 chr3R:13660913-13661033 9.56e-01 120 chr3L:10818403-10818523 8.41e-01 120 chr2L:1218199-1218319 8.23e-01 120 chrX:23096959-23097079 9.50e-01 120 chr3L:9125974-9126094 5.29e-02 120 chr3R:25519978-25520098 4.75e-01 120 chr3L:7862845-7862965 5.94e-01 120 chr2L:19629383-19629503 4.81e-02 120 chr3R:14586592-14586712 3.48e-01 120 chr3L:13262476-13262596 1.00e+00 120 chr2R:17870020-17870140 1.48e-01 120 chr2R:13028944-13029064 2.34e-01 120 chr3R:6664922-6665042 7.54e-01 120 chrX:13320712-13320832 6.13e-01 120 chr3L:17948761-17948881 1.00e+00 120 chr3L:20827353-20827473 6.68e-01 120 chr3R:22668687-22668807 2.34e-01 120 chr2L:22036940-22037060 4.25e-01 120 chr2R:6870726-6870846 9.51e-01 120 chr3L:20710690-20710810 8.47e-01 120 chr3R:15468487-15468607 1.17e-02 42_[+1(2.27e-05)]_70 chr3L:1349043-1349163 1.00e+00 120 chr2L:2032101-2032221 9.99e-01 120 chr2R:7109485-7109605 1.37e-05 83_[+3(3.19e-06)]_19_[+1(1.85e-05)]_\ 2 chr2R:10347811-10347931 3.23e-04 68_[+1(2.70e-05)]_44 chrX:19884349-19884469 9.00e-01 120 chr3L:13903914-13904034 3.45e-03 43_[+5(1.26e-06)]_69 chr2L:10061378-10061498 1.00e+00 120 chr3L:3930900-3931020 3.89e-02 120 chr2L:20936557-20936677 8.43e-01 120 chr3L:12590331-12590451 4.91e-01 120 chr2L:4084403-4084523 2.68e-02 120 chr2L:1558058-1558178 7.49e-05 111_[+5(3.98e-07)]_1 chr2L:7757013-7757133 9.68e-01 120 chr2R:10551098-10551218 9.95e-01 120 chr2R:6589399-6589519 3.42e-01 120 chr3L:9125763-9125883 3.29e-01 120 chr2R:13617970-13618090 1.00e+00 120 chrX:3297683-3297803 2.80e-01 120 chr2L:9996693-9996813 7.04e-01 120 chr3R:16241885-16242005 8.54e-01 120 chr3R:16215093-16215213 3.11e-03 120 chr3L:15203239-15203359 9.54e-01 120 chr3L:17009707-17009827 8.20e-01 120 chr3L:19905621-19905741 4.90e-02 38_[+2(6.03e-05)]_74 chr2L:20944436-20944556 8.82e-01 120 chr3L:3449854-3449974 5.37e-02 120 chr2R:1345235-1345355 1.78e-01 120 chr3R:28327269-28327389 5.96e-01 120 chr2L:6210984-6211104 8.26e-05 15_[+2(1.62e-06)]_97 chr3L:3802191-3802311 3.03e-04 107_[+4(1.54e-06)]_5 chr3L:21056317-21056437 5.98e-01 120 chr2L:14995185-14995305 1.00e+00 120 chr3L:11347060-11347180 1.15e-04 76_[+1(2.12e-05)]_36 chr2R:20529458-20529578 4.35e-01 120 chr3R:13984402-13984522 9.62e-01 120 chr2L:19800084-19800204 9.68e-01 120 chr2L:309288-309408 1.30e-01 111_[+4(5.78e-05)]_1 chr3L:15847852-15847972 5.88e-01 120 chr3L:11278725-11278845 3.25e-02 15_[+2(6.03e-05)]_97 chr2L:20823313-20823433 1.00e+00 120 chr3R:22526390-22526510 9.99e-01 120 chrX:18141500-18141620 1.43e-02 120 chr3R:22358107-22358227 8.48e-01 120 chr3L:10796064-10796184 9.82e-01 120 chr2L:493387-493507 6.27e-01 120 chr3L:21585542-21585662 1.46e-01 120 chr3L:24352746-24352866 4.46e-03 2_[+4(6.42e-05)]_5_[+4(5.78e-05)]_\ 97 chr3L:11246840-11246960 2.86e-01 120 chr2L:8099824-8099944 2.94e-01 120 chr2L:19019174-19019294 9.44e-01 120 chr3R:14285730-14285850 2.88e-01 120 chrX:17582078-17582198 1.00e+00 120 chr3R:25623989-25624109 4.78e-01 120 chrX:18919663-18919783 2.47e-01 120 chr2R:10568218-10568338 4.63e-01 120 chr2L:6819594-6819714 9.88e-01 120 chr3L:5188491-5188611 9.09e-01 120 chr3R:21348048-21348168 9.54e-01 120 chr3R:24100573-24100693 9.92e-01 120 chr3L:14328518-14328638 9.97e-01 120 chr2R:5127037-5127157 6.32e-04 41_[+1(5.91e-06)]_71 chr3L:11278932-11279052 1.00e+00 120 chr2R:1000151-1000271 1.00e+00 120 chrX:3358973-3359093 1.93e-01 120 chr2R:7141920-7142040 1.00e+00 120 chr3R:10656136-10656256 9.32e-01 120 chr3L:4413431-4413551 7.82e-01 120 chr2L:5209854-5209974 9.88e-01 120 chr3R:29524450-29524570 9.38e-01 120 chr3R:30775440-30775560 6.69e-03 102_[+1(8.47e-05)]_10 chr3R:28959283-28959403 5.65e-01 120 chr3R:12543013-12543133 8.00e-01 120 chr2R:12537628-12537748 4.16e-01 120 chr3L:13949851-13949971 1.69e-01 120 chrX:1279147-1279267 1.21e-01 120 chr3L:12097398-12097518 1.00e+00 120 chr2R:11176357-11176477 1.00e+00 120 chrX:18125579-18125699 9.81e-01 120 chrX:9004473-9004593 7.07e-01 120 chr3R:19093426-19093546 3.49e-04 89_[+1(2.54e-05)]_23 chr2L:16498198-16498318 9.66e-01 120 chrX:12724793-12724913 1.00e+00 120 chr3R:18914333-18914453 4.03e-01 120 chr2L:1619235-1619355 2.99e-01 120 chr2R:8859939-8860059 3.92e-01 120 chr2L:12529147-12529267 9.96e-02 120 chr2L:3779120-3779240 9.79e-01 120 chr3R:21188191-21188311 8.51e-01 120 chr3L:4000927-4001047 4.35e-02 120 chrX:17499095-17499215 4.28e-05 2_[+4(1.54e-06)]_110 chr2L:7443042-7443162 9.87e-01 120 chr2L:18694844-18694964 7.65e-01 120 chr3R:19151994-19152114 1.71e-01 120 chr3L:908612-908732 2.16e-01 120 chr3L:12062381-12062501 1.48e-03 95_[+1(1.96e-05)]_17 chr2R:14971246-14971366 1.00e+00 120 chr3R:20311050-20311170 2.58e-04 57_[+1(7.29e-07)]_55 chr3L:13022937-13023057 6.42e-01 120 chr2R:23003266-23003386 2.47e-01 120 chr3L:11556631-11556751 6.72e-03 97_[+4(5.78e-05)]_15 chr3R:10111785-10111905 7.69e-01 120 chr2R:23154626-23154746 1.00e+00 120 chr3L:1464534-1464654 1.31e-02 120 chr3L:7861973-7862093 1.00e+00 120 chr3L:11379933-11380053 9.98e-01 120 chr3R:4232634-4232754 3.78e-02 120 chr3L:11336566-11336686 2.33e-02 17_[+2(6.03e-05)]_95 chr2L:15039109-15039229 9.63e-04 103_[+4(5.78e-05)]_9 chr3R:16510210-16510330 6.43e-07 27_[+4(4.47e-06)]_85 chr3L:10849680-10849800 9.82e-01 120 chr3R:14691558-14691678 9.99e-01 120 chr3L:14166387-14166507 1.37e-03 10_[+1(4.03e-05)]_102 chr3L:10337768-10337888 3.84e-01 120 chr2L:6540203-6540323 9.56e-01 120 chr2L:15392542-15392662 4.08e-01 120 chr2R:16847100-16847220 9.98e-01 120 chr3L:1320766-1320886 2.44e-01 120 chr3L:11003073-11003193 1.97e-06 32_[+1(1.96e-05)]_64_[+2(4.70e-06)]_\ 8 chr3L:6969295-6969415 9.98e-01 120 chr4:663255-663375 5.52e-03 120 chrX:13307444-13307564 2.46e-03 50_[+1(1.70e-05)]_62 chr3R:4732326-4732446 7.23e-04 27_[+5(1.65e-06)]_85 chr2R:22738034-22738154 3.79e-01 120 chr3L:21738544-21738664 7.98e-01 120 chr3L:4355312-4355432 9.76e-01 120 chr3R:14002095-14002215 9.96e-01 120 chr2L:1316572-1316692 4.66e-01 120 chr3R:26235201-26235321 8.98e-01 120 chrX:3109104-3109224 1.41e-01 120 chr3R:18167406-18167526 9.98e-01 120 chr3R:27988651-27988771 8.19e-01 120 chrX:14583358-14583478 8.72e-01 120 chr2R:6770118-6770238 4.84e-02 90_[+5(8.97e-05)]_22 chr2L:1655914-1656034 2.54e-01 120 chr3L:21463074-21463194 1.78e-01 120 chrX:16580040-16580160 4.47e-01 120 chr2R:11044548-11044668 5.95e-01 120 chr3L:19898932-19899052 9.98e-01 120 chr2R:9684036-9684156 5.18e-01 120 chr3L:9468286-9468406 2.65e-02 120 chr3R:21856772-21856892 3.05e-01 120 chr2R:1515446-1515566 1.95e-01 120 chrX:13320914-13321034 8.42e-01 120 chr3R:6414864-6414984 1.00e+00 120 chr3L:16657093-16657213 9.99e-01 120 chr3R:17231629-17231749 1.00e-05 85_[+1(3.60e-07)]_27 chrX:9106696-9106816 9.81e-01 120 chr3L:15693111-15693231 2.76e-01 120 chr3L:16160163-16160283 9.98e-01 120 chr3R:6760771-6760891 6.87e-01 120 chr2L:14995386-14995506 2.22e-01 120 chr3L:16544343-16544463 8.72e-01 120 chr2L:18566862-18566982 6.19e-01 120 chr3L:16045506-16045626 9.55e-01 120 chr3L:11414631-11414751 2.59e-01 120 chr3R:9494452-9494572 9.96e-01 120 chr3L:5365160-5365280 2.06e-05 45_[+1(3.66e-06)]_67 chrX:11081367-11081487 1.54e-01 120 chr3L:19315088-19315208 5.37e-01 120 chr3R:11949387-11949507 3.26e-01 120 chr3L:17506170-17506290 9.92e-01 120 chr3R:6406193-6406313 9.35e-01 120 chr3L:20494262-20494382 9.71e-01 120 chr2L:3805315-3805435 3.89e-03 120 chrX:8491914-8492034 6.31e-10 60_[+2(1.62e-06)]_3_[+3(3.19e-06)]_\ 23_[+1(1.35e-05)]_10 chrX:19106976-19107096 3.02e-01 120 chr2L:11394317-11394437 4.30e-01 120 chr3L:15672965-15673085 6.16e-01 120 chrX:3950332-3950452 9.99e-01 120 chr2L:18150986-18151106 9.94e-01 120 chr3L:5819471-5819591 4.55e-01 120 chr2R:1522506-1522626 2.50e-05 58_[+3(3.19e-06)]_17_[+4(5.78e-05)]_\ 29 chr3L:3544348-3544468 1.00e+00 120 chr2L:7566772-7566892 1.63e-01 120 chr3R:16242096-16242216 9.55e-01 120 chr2R:13999314-13999434 9.96e-01 120 chr2L:2494652-2494772 9.45e-02 120 chrX:20508002-20508122 7.42e-01 120 chr3R:21612952-21613072 2.01e-01 120 chrX:14213650-14213770 6.89e-04 12_[+1(9.28e-06)]_100 chrX:19964386-19964506 9.98e-01 120 chr2L:14619753-14619873 5.84e-01 120 chrX:10628994-10629114 1.00e+00 120 chrX:7579940-7580060 1.63e-03 17_[+5(5.06e-05)]_95 chrX:10324991-10325111 5.71e-01 120 chr2L:13876843-13876963 1.18e-03 70_[+3(3.19e-06)]_42 chr3L:15532942-15533062 8.91e-01 120 chr2R:21706472-21706592 2.88e-01 120 chr2R:8240762-8240882 1.68e-01 120 chr2R:19874678-19874798 1.39e-02 111_[+1(1.51e-05)]_1 chrX:16385996-16386116 5.72e-02 120 chr3L:1549409-1549529 9.07e-01 120 chr2R:14136893-14137013 9.82e-01 120 chr2R:13996767-13996887 4.71e-01 120 chr2R:13475121-13475241 5.28e-03 120 chr2R:16096996-16097116 5.16e-01 120 chr2R:20195292-20195412 4.29e-03 64_[+4(5.78e-05)]_48 chr3R:17385461-17385581 1.21e-01 12_[+4(5.78e-05)]_100 chr2R:13015205-13015325 9.64e-01 120 chrX:17293564-17293684 1.00e+00 120 chr3L:15199272-15199392 1.00e+00 120 chr2L:8415459-8415579 1.00e+00 120 chr2L:20915498-20915618 2.61e-01 120 chr2R:7076991-7077111 6.35e-01 120 chr2R:15351466-15351586 3.13e-01 120 chr3L:775045-775165 3.66e-01 120 chr3R:13446632-13446752 9.92e-01 120 chr2R:10160284-10160404 1.49e-01 120 chr2L:13512366-13512486 1.53e-03 65_[+2(6.71e-05)]_47 chr2L:9448814-9448934 7.81e-01 120 chr2R:14137096-14137216 2.92e-04 55_[+5(1.82e-05)]_39_[+5(1.26e-06)]_\ 10 chr3L:9065100-9065220 1.48e-01 120 chrX:15120182-15120302 1.22e-03 12_[+2(6.03e-05)]_100 chr3R:16704359-16704479 1.65e-03 10_[+2(6.03e-05)]_102 chr3L:16452395-16452515 9.69e-01 120 chr2R:6157499-6157619 7.17e-04 62_[+1(1.96e-05)]_50 chr3R:8784928-8785048 4.01e-01 120 chr3L:16060878-16060998 9.99e-01 120 chr2L:9775277-9775397 6.53e-02 120 chr2R:14126327-14126447 9.57e-02 120 chr2L:22037149-22037269 3.84e-01 120 chr2L:17778622-17778742 3.09e-01 120 chrX:19164922-19165042 9.44e-01 120 chr3R:19339403-19339523 2.35e-01 120 chrX:19348936-19349056 4.87e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************