******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tin.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:21091932-21092052 1.0000 120 chr2R:20906658-20906778 1.0000 120 chrX:7162659-7162779 1.0000 120 chr3R:16573917-16574037 1.0000 120 chr3L:12037945-12038065 1.0000 120 chr3L:16768398-16768518 1.0000 120 chr2R:23003270-23003390 1.0000 120 chr3L:3288560-3288680 1.0000 120 chr2R:12274368-12274488 1.0000 120 chr3L:1880845-1880965 1.0000 120 chr2R:21178800-21178920 1.0000 120 chr3L:905156-905276 1.0000 120 chr3L:16385958-16386078 1.0000 120 chr2L:12351032-12351152 1.0000 120 chr2L:14094773-14094893 1.0000 120 chr2L:14701600-14701720 1.0000 120 chrX:771818-771938 1.0000 120 chr3R:10636169-10636289 1.0000 120 chr3R:21373549-21373669 1.0000 120 chr3L:20771109-20771229 1.0000 120 chrX:20507866-20507986 1.0000 120 chr3L:9614089-9614209 1.0000 120 chr3R:13885177-13885297 1.0000 120 chr2R:23574927-23575047 1.0000 120 chr2R:23713266-23713386 1.0000 120 chr2L:3587475-3587595 1.0000 120 chr3L:11484650-11484770 1.0000 120 chr3R:4654668-4654788 1.0000 120 chrX:3288934-3289054 1.0000 120 chr3R:16748679-16748799 1.0000 120 chr3L:8544891-8545011 1.0000 120 chr2R:18994143-18994263 1.0000 120 chr3R:20008805-20008925 1.0000 120 chr2L:18906733-18906853 1.0000 120 chr3R:31706321-31706441 1.0000 120 chr2R:21910009-21910129 1.0000 120 chr2L:3852272-3852392 1.0000 120 chr2L:8746368-8746488 1.0000 120 chr3R:15347904-15348024 1.0000 120 chr3R:29089816-29089936 1.0000 120 chr2L:10986178-10986298 1.0000 120 chr3L:13929289-13929409 1.0000 120 chr3L:13189366-13189486 1.0000 120 chr2L:8528468-8528588 1.0000 120 chr2L:3472386-3472506 1.0000 120 chrX:16967549-16967669 1.0000 120 chr2L:15248682-15248802 1.0000 120 chr3R:27937907-27938027 1.0000 120 chr3R:10628416-10628536 1.0000 120 chr3L:13197650-13197770 1.0000 120 chr2L:10428685-10428805 1.0000 120 chrX:6615550-6615670 1.0000 120 chrX:9652116-9652236 1.0000 120 chr3L:3851948-3852068 1.0000 120 chr3R:5300747-5300867 1.0000 120 chr2L:7985065-7985185 1.0000 120 chr3L:12062958-12063078 1.0000 120 chr3L:13450283-13450403 1.0000 120 chr3R:26900138-26900258 1.0000 120 chrX:11108301-11108421 1.0000 120 chr3L:745643-745763 1.0000 120 chr3L:14999668-14999788 1.0000 120 chr3R:24817241-24817361 1.0000 120 chr3L:11285204-11285324 1.0000 120 chr2L:3598606-3598726 1.0000 120 chr2R:18125793-18125913 1.0000 120 chrX:17510305-17510425 1.0000 120 chr2L:16743086-16743206 1.0000 120 chrX:4498396-4498516 1.0000 120 chr3R:24753625-24753745 1.0000 120 chrX:1380462-1380582 1.0000 120 chr3R:18215425-18215545 1.0000 120 chrX:13630448-13630568 1.0000 120 chr3L:11328380-11328500 1.0000 120 chr3L:1216625-1216745 1.0000 120 chr3R:12350615-12350735 1.0000 120 chr3R:13999682-13999802 1.0000 120 chrX:18635406-18635526 1.0000 120 chr3R:14077174-14077294 1.0000 120 chrX:10601760-10601880 1.0000 120 chr2R:8751616-8751736 1.0000 120 chr2L:16816106-16816226 1.0000 120 chr3L:14071694-14071814 1.0000 120 chr2L:4847309-4847429 1.0000 120 chr2R:6656341-6656461 1.0000 120 chr3R:10100698-10100818 1.0000 120 chr3L:3078593-3078713 1.0000 120 chrX:7571392-7571512 1.0000 120 chrX:3367431-3367551 1.0000 120 chr2L:19517458-19517578 1.0000 120 chr2R:16170810-16170930 1.0000 120 chr3L:10350889-10351009 1.0000 120 chrX:5883542-5883662 1.0000 120 chr3L:5988767-5988887 1.0000 120 chr3L:10428206-10428326 1.0000 120 chr3L:613718-613838 1.0000 120 chr3R:16718128-16718248 1.0000 120 chr2L:1150662-1150782 1.0000 120 chr2L:20097254-20097374 1.0000 120 chrX:7710937-7711057 1.0000 120 chrX:5639251-5639371 1.0000 120 chrX:6621726-6621846 1.0000 120 chr2R:13968164-13968284 1.0000 120 chr3R:9494287-9494407 1.0000 120 chr3R:29039787-29039907 1.0000 120 chr3L:8445089-8445209 1.0000 120 chrX:13757039-13757159 1.0000 120 chr3L:10206323-10206443 1.0000 120 chrX:11548859-11548979 1.0000 120 chr2L:1428478-1428598 1.0000 120 chr2L:10543509-10543629 1.0000 120 chrX:8125251-8125371 1.0000 120 chr2L:7258237-7258357 1.0000 120 chr3R:25004899-25005019 1.0000 120 chr2R:20257442-20257562 1.0000 120 chr3R:23346999-23347119 1.0000 120 chrX:12242494-12242614 1.0000 120 chr2L:3566714-3566834 1.0000 120 chrX:6375775-6375895 1.0000 120 chrX:1052813-1052933 1.0000 120 chr3R:31744155-31744275 1.0000 120 chrX:3968818-3968938 1.0000 120 chr2R:14618660-14618780 1.0000 120 chr3L:797017-797137 1.0000 120 chr3L:9028137-9028257 1.0000 120 chr2L:7270378-7270498 1.0000 120 chr2R:23652362-23652482 1.0000 120 chr3R:5758961-5759081 1.0000 120 chr2L:19377538-19377658 1.0000 120 chrX:14602680-14602800 1.0000 120 chr2R:13055002-13055122 1.0000 120 chrX:7617037-7617157 1.0000 120 chrX:3068424-3068544 1.0000 120 chrX:4530006-4530126 1.0000 120 chrX:13128077-13128197 1.0000 120 chr3R:27677206-27677326 1.0000 120 chr3R:8171669-8171789 1.0000 120 chr2L:10442084-10442204 1.0000 120 chr2R:15381296-15381416 1.0000 120 chr3R:30413952-30414072 1.0000 120 chr3L:15563038-15563158 1.0000 120 chr2R:9286625-9286745 1.0000 120 chr3R:28631957-28632077 1.0000 120 chr2R:16800187-16800307 1.0000 120 chr3L:20471142-20471262 1.0000 120 chr2L:5238407-5238527 1.0000 120 chr3L:11993144-11993264 1.0000 120 chr3L:6743142-6743262 1.0000 120 chr2L:8834928-8835048 1.0000 120 chr2L:1456339-1456459 1.0000 120 chr3L:7151927-7152047 1.0000 120 chr3L:772355-772475 1.0000 120 chr3R:10564389-10564509 1.0000 120 chr2L:5245708-5245828 1.0000 120 chrX:5285927-5286047 1.0000 120 chr3L:1691158-1691278 1.0000 120 chr2L:3861497-3861617 1.0000 120 chr3R:21493756-21493876 1.0000 120 chr2L:13073908-13074028 1.0000 120 chr2L:8602717-8602837 1.0000 120 chrX:16822227-16822347 1.0000 120 chr3R:9605212-9605332 1.0000 120 chr2L:10698162-10698282 1.0000 120 chrX:8777302-8777422 1.0000 120 chr3L:12504170-12504290 1.0000 120 chrX:2149668-2149788 1.0000 120 chr3R:16834770-16834890 1.0000 120 chr2L:21787098-21787218 1.0000 120 chr3R:10161308-10161428 1.0000 120 chr2R:22548206-22548326 1.0000 120 chr3L:15311605-15311725 1.0000 120 chr3R:25880375-25880495 1.0000 120 chr2L:6339659-6339779 1.0000 120 chr3L:7249324-7249444 1.0000 120 chr3R:16212929-16213049 1.0000 120 chr3L:1029753-1029873 1.0000 120 chr3L:1295818-1295938 1.0000 120 chr2L:9576802-9576922 1.0000 120 chr2R:19669824-19669944 1.0000 120 chrX:13368276-13368396 1.0000 120 chr3L:21509626-21509746 1.0000 120 chr3L:18250813-18250933 1.0000 120 chr3L:8629118-8629238 1.0000 120 chrX:12463086-12463206 1.0000 120 chrX:16782273-16782393 1.0000 120 chr3R:18906462-18906582 1.0000 120 chrX:4010996-4011116 1.0000 120 chr2R:23940214-23940334 1.0000 120 chrX:17531929-17532049 1.0000 120 chr2L:14519400-14519520 1.0000 120 chr3R:9038810-9038930 1.0000 120 chr3L:9367029-9367149 1.0000 120 chr3R:30797468-30797588 1.0000 120 chr2L:1462223-1462343 1.0000 120 chr3L:17242234-17242354 1.0000 120 chrX:17751838-17751958 1.0000 120 chr3R:26172188-26172308 1.0000 120 chr2R:25085531-25085651 1.0000 120 chr3R:26654685-26654805 1.0000 120 chr2R:8914049-8914169 1.0000 120 chr2L:19577296-19577416 1.0000 120 chrX:16773020-16773140 1.0000 120 chr3R:26052454-26052574 1.0000 120 chr2L:21163533-21163653 1.0000 120 chr3R:4220926-4221046 1.0000 120 chr2R:14434336-14434456 1.0000 120 chr3L:12136775-12136895 1.0000 120 chr3L:7912044-7912164 1.0000 120 chr2R:11738661-11738781 1.0000 120 chr2L:20650010-20650130 1.0000 120 chrX:18923645-18923765 1.0000 120 chr3R:31064787-31064907 1.0000 120 chrX:13334978-13335098 1.0000 120 chr2L:16709753-16709873 1.0000 120 chrX:11629143-11629263 1.0000 120 chr2R:18676555-18676675 1.0000 120 chr3L:3300489-3300609 1.0000 120 chrX:19667050-19667170 1.0000 120 chr2R:20153981-20154101 1.0000 120 chr2L:9598432-9598552 1.0000 120 chr2L:18666033-18666153 1.0000 120 chr2L:1108386-1108506 1.0000 120 chr3R:29522351-29522471 1.0000 120 chr3L:13006587-13006707 1.0000 120 chr3L:14545436-14545556 1.0000 120 chrX:4010312-4010432 1.0000 120 chrX:15615531-15615651 1.0000 120 chr3L:6977540-6977660 1.0000 120 chr2L:6830470-6830590 1.0000 120 chr3R:25489208-25489328 1.0000 120 chr2R:22806982-22807102 1.0000 120 chr2L:18921434-18921554 1.0000 120 chr2R:20067230-20067350 1.0000 120 chr3L:12277496-12277616 1.0000 120 chr3L:11350938-11351058 1.0000 120 chr3R:23356118-23356238 1.0000 120 chr3L:18226128-18226248 1.0000 120 chr3R:17400867-17400987 1.0000 120 chr3L:15787511-15787631 1.0000 120 chr3L:7614380-7614500 1.0000 120 chr3R:23709678-23709798 1.0000 120 chr3R:29591569-29591689 1.0000 120 chr3L:11449045-11449165 1.0000 120 chr2R:21503258-21503378 1.0000 120 chr3L:16615467-16615587 1.0000 120 chr2L:10356625-10356745 1.0000 120 chr3L:12053838-12053958 1.0000 120 chr2L:5045242-5045362 1.0000 120 chr3R:17551240-17551360 1.0000 120 chr4:696853-696973 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tin/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tin.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.325 C 0.179 G 0.179 T 0.318 Background letter frequencies (from file dataset with add-one prior applied): A 0.325 C 0.179 G 0.179 T 0.318 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GATGGCGC MEME-1 width = 8 sites = 29 llr = 297 E-value = 2.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :7::::11 pos.-specific C :::::a:9 probability G a21a9:9: matrix T :19:1::: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * ***** Relative 1.5 * ***** Entropy 1.2 * ****** (14.8 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATGGCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17531929-17532049 90 3.40e-06 TTAAGTTTAT GATGGCGC CACCTATAGT chr2R:13968164-13968284 53 3.40e-06 CTTTCCGGCA GATGGCGC CAGGTGGTTA chrX:7710937-7711057 76 3.40e-06 TTAATCCATA GATGGCGC CAGATGTTTC chrX:18635406-18635526 49 3.40e-06 GTCTTGCATA GATGGCGC ATAAGCTGCA chr2L:16743086-16743206 64 3.40e-06 CTAGCCAGCA GATGGCGC TGGTGAAGTA chr2L:3472386-3472506 78 3.40e-06 TGCCTGTGCA GATGGCGC CACCATGACG chr3R:16748679-16748799 53 3.40e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:12274368-12274488 39 3.40e-06 ATTGCCGAAA GATGGCGC CCATGGCGCA chr3L:3288560-3288680 80 3.40e-06 AAGCTGTGTA GATGGCGC TGCTGAGTTC chr2R:20906658-20906778 96 3.40e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr2R:14434336-14434456 79 5.27e-06 AATTACTGTA GGTGGCGC CTAACATTCA chr2L:9576802-9576922 74 5.27e-06 TTTTTAACTA GGTGGCGC AGGAGATCAT chr2R:16800187-16800307 104 5.27e-06 ATTTCGTATA GGTGGCGC CACTTAAAC chr3R:10100698-10100818 53 5.27e-06 TTGGCCAGAA GGTGGCGC TCGATGCGAC chrX:17751838-17751958 89 7.19e-06 TTCAAGAGTA GAGGGCGC CGCTTACTTT chrX:16782273-16782393 88 1.05e-05 CAAGCAATTT GTTGGCGC GTCGCGTGTT chrX:3288934-3289054 77 1.05e-05 AGTCACTTGT GTTGGCGC CTCTTATCAG chr2R:23652362-23652482 21 1.24e-05 AATTCAGAGT GCTGGCGC CATCCAGCTT chrX:16967549-16967669 83 1.34e-05 GCACTCGGCA GGGGGCGC CACAACGACG chr3R:23709678-23709798 47 1.96e-05 TGCCACAATA GATGGCAC GCACATTTGT chr3R:31706321-31706441 28 1.96e-05 TTCTGAAACA GATGGCAC TCTGTTATGA chr2R:21178800-21178920 59 1.96e-05 TTTAACATTT GATGGCAC TATTTTCGTG chr3R:25880375-25880495 55 2.57e-05 GAGATACAGT GATGTCGC TTTTAAAAGC chr2R:23940214-23940334 102 3.52e-05 GAATCCCCCT GATGGCCC CTTATATCGA chrX:20507866-20507986 56 3.52e-05 GAGGAGGTGA GATGGCGA GAAAGGTTTA chrX:7162659-7162779 75 3.52e-05 TTGGCCCATA GATGGCGA CAGTATGCTT chrX:5883542-5883662 42 4.54e-05 AAGTCCGCCA GATGGCGG CACAGCATGA chr2R:6656341-6656461 33 4.54e-05 AAAAAATGCC GATGCCGC GCGCTGTTGT chr3R:5300747-5300867 64 4.87e-05 CCTACCGCCA GGTGTCGC CCGTGGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17531929-17532049 3.4e-06 89_[+1]_23 chr2R:13968164-13968284 3.4e-06 52_[+1]_60 chrX:7710937-7711057 3.4e-06 75_[+1]_37 chrX:18635406-18635526 3.4e-06 48_[+1]_64 chr2L:16743086-16743206 3.4e-06 63_[+1]_49 chr2L:3472386-3472506 3.4e-06 77_[+1]_35 chr3R:16748679-16748799 3.4e-06 52_[+1]_60 chr2R:12274368-12274488 3.4e-06 38_[+1]_74 chr3L:3288560-3288680 3.4e-06 79_[+1]_33 chr2R:20906658-20906778 3.4e-06 95_[+1]_17 chr2R:14434336-14434456 5.3e-06 78_[+1]_34 chr2L:9576802-9576922 5.3e-06 73_[+1]_39 chr2R:16800187-16800307 5.3e-06 103_[+1]_9 chr3R:10100698-10100818 5.3e-06 52_[+1]_60 chrX:17751838-17751958 7.2e-06 88_[+1]_24 chrX:16782273-16782393 1.1e-05 87_[+1]_25 chrX:3288934-3289054 1.1e-05 76_[+1]_36 chr2R:23652362-23652482 1.2e-05 20_[+1]_92 chrX:16967549-16967669 1.3e-05 82_[+1]_30 chr3R:23709678-23709798 2e-05 46_[+1]_66 chr3R:31706321-31706441 2e-05 27_[+1]_85 chr2R:21178800-21178920 2e-05 58_[+1]_54 chr3R:25880375-25880495 2.6e-05 54_[+1]_58 chr2R:23940214-23940334 3.5e-05 101_[+1]_11 chrX:20507866-20507986 3.5e-05 55_[+1]_57 chrX:7162659-7162779 3.5e-05 74_[+1]_38 chrX:5883542-5883662 4.5e-05 41_[+1]_71 chr2R:6656341-6656461 4.5e-05 32_[+1]_80 chr3R:5300747-5300867 4.9e-05 63_[+1]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGCGC width=8 seqs=29 chrX:17531929-17532049 ( 90) GATGGCGC 1 chr2R:13968164-13968284 ( 53) GATGGCGC 1 chrX:7710937-7711057 ( 76) GATGGCGC 1 chrX:18635406-18635526 ( 49) GATGGCGC 1 chr2L:16743086-16743206 ( 64) GATGGCGC 1 chr2L:3472386-3472506 ( 78) GATGGCGC 1 chr3R:16748679-16748799 ( 53) GATGGCGC 1 chr2R:12274368-12274488 ( 39) GATGGCGC 1 chr3L:3288560-3288680 ( 80) GATGGCGC 1 chr2R:20906658-20906778 ( 96) GATGGCGC 1 chr2R:14434336-14434456 ( 79) GGTGGCGC 1 chr2L:9576802-9576922 ( 74) GGTGGCGC 1 chr2R:16800187-16800307 ( 104) GGTGGCGC 1 chr3R:10100698-10100818 ( 53) GGTGGCGC 1 chrX:17751838-17751958 ( 89) GAGGGCGC 1 chrX:16782273-16782393 ( 88) GTTGGCGC 1 chrX:3288934-3289054 ( 77) GTTGGCGC 1 chr2R:23652362-23652482 ( 21) GCTGGCGC 1 chrX:16967549-16967669 ( 83) GGGGGCGC 1 chr3R:23709678-23709798 ( 47) GATGGCAC 1 chr3R:31706321-31706441 ( 28) GATGGCAC 1 chr2R:21178800-21178920 ( 59) GATGGCAC 1 chr3R:25880375-25880495 ( 55) GATGTCGC 1 chr2R:23940214-23940334 ( 102) GATGGCCC 1 chrX:20507866-20507986 ( 56) GATGGCGA 1 chrX:7162659-7162779 ( 75) GATGGCGA 1 chrX:5883542-5883662 ( 42) GATGGCGG 1 chr2R:6656341-6656461 ( 33) GATGCCGC 1 chr3R:5300747-5300867 ( 64) GGTGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 2.3e-016 -1150 -1150 248 -1150 109 -237 21 -220 -1150 -1150 -137 155 -1150 -1150 248 -1150 -1150 -237 233 -220 -1150 248 -1150 -1150 -165 -237 227 -1150 -223 233 -237 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.3e-016 0.000000 0.000000 1.000000 0.000000 0.689655 0.034483 0.206897 0.068966 0.000000 0.000000 0.068966 0.931034 0.000000 0.000000 1.000000 0.000000 0.000000 0.034483 0.896552 0.068966 0.000000 1.000000 0.000000 0.000000 0.103448 0.034483 0.862069 0.000000 0.068966 0.896552 0.034483 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- G[AG]TGGCGC -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RGCWGCAM MEME-2 width = 8 sites = 46 llr = 390 E-value = 1.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::3::64 pos.-specific C 1:a1:a24 probability G 5a::a:22 matrix T :::6:::: bits 2.5 ** ** 2.2 ** ** 2.0 ** ** 1.7 ** ** Relative 1.5 ** ** Entropy 1.2 ** ** (12.2 bits) 1.0 ** ** 0.7 *** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGCAC consensus A A CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14602680-14602800 40 3.40e-06 CTGCGACACA GGCTGCAC TCGCTATGCG chr2R:18125793-18125913 59 3.40e-06 GAAGCGCCAG GGCTGCAC AATAGTCGAT chr3R:21373549-21373669 45 3.40e-06 GAAGCACCAG GGCTGCAC ATTCAATTAG chr2L:14701600-14701720 12 3.40e-06 GCTAACTCTT GGCTGCAC TGAGAAAAAT chr2L:20097254-20097374 108 5.27e-06 ACTATCTAAA GGCTGCCC ATGCT chrX:7571392-7571512 108 7.14e-06 CATGAGCGCA GGCTGCGC AGAGA chr2L:21163533-21163653 63 1.06e-05 CTAACGCATT GGCAGCAC TGCCCACAAT chr2R:8914049-8914169 49 1.06e-05 ATCTCGATGT GGCAGCAC GCTCGGTGTT chrX:13334978-13335098 79 1.68e-05 TGAACTCGAG GGCTGCAA TTTGCCCGCA chrX:13128077-13128197 59 1.68e-05 CTATTTTTAT GGCTGCAA TTGTTTGTTG chr3R:18215425-18215545 38 1.68e-05 GTAAGACCAG GGCTGCAA CTACGAAATG chr3L:11350938-11351058 78 3.36e-05 TGTTTCCCAG GGCTGCCA AATCAGATGG chr3L:7912044-7912164 38 3.36e-05 AATAGTTGTA AGCTGCAC TATATTAACA chr3R:10161308-10161428 23 3.36e-05 AAAATACCAG GGCTGCCA GCTACACAAG chrX:18635406-18635526 60 3.36e-05 ATGGCGCATA AGCTGCAC ACCTAGACAC chr2R:21910009-21910129 40 3.36e-05 AAGGAAAATA AGCTGCAC GCCATAATTA chrX:3968818-3968938 100 3.84e-05 CCACAGGTCT GGCAGCGC AAAAGCTTGT chrX:11108301-11108421 97 3.84e-05 TCCCCCATAT GGCTGCCG ATAATATTCG chr2L:5045242-5045362 38 5.16e-05 TAAAATCAAC AGCTGCCC TTTAATTGCA chr2R:20067230-20067350 16 5.16e-05 CCAAAGCCCA CGCTGCAC GGAGAAAAAA chrX:1380462-1380582 29 5.16e-05 TCTGGGCCAG CGCTGCAC AACACTGCCA chr2L:16743086-16743206 90 5.16e-05 TAATCTTATG GGCCGCGC TTTTTGAGGT chr2L:9598432-9598552 29 5.79e-05 GATGTGCGGT GGCAGCAA GTCAGGCTTC chr3R:5300747-5300867 111 5.79e-05 GAGCTTTTAC GGCAGCAA AA chr3L:1295818-1295938 102 6.47e-05 TGGCAACGCT GGCAGCAG TAGAATTATT chrX:4530006-4530126 67 6.47e-05 GCATAGCACA AGCTGCGC TTTAGCCAAG chr2L:18921434-18921554 110 7.01e-05 TATATAAATC CGCTGCCC TTA chr3R:12350615-12350735 44 7.01e-05 GCCACCTACT GGCCGCAA GCTCACATCG chrX:3068424-3068544 50 8.18e-05 CAAAGAAAGG GGCAGCCA TGTTAAGCAT chr3L:13189366-13189486 88 9.68e-05 GTTTGTGTTT AGCTGCAA ACATATTGTA chr3R:23346999-23347119 30 1.12e-04 AATGTGGGAA AGCTGCAG CTTGGGAAAA chr2R:6656341-6656461 16 1.12e-04 TCGTTGTAAT GGCCGCCA AAAAATGCCG chr2R:14618660-14618780 91 1.22e-04 ACGACCTATC GGCAGCGG TGCCACCACC chr3L:14071694-14071814 72 1.22e-04 aaacggttat ggcagcgg tcactgctgg chr3L:11449045-11449165 35 1.36e-04 AATACCCTAA AGCTGCCA AGCGAAAAAG chr2L:19377538-19377658 20 1.36e-04 AGTCGGCATC CGCTGCAA CTACACTGAG chr2L:18666033-18666153 71 1.51e-04 ACTACTCGCA AGCAGCGC TCTAATCGGC chr3R:4220926-4221046 85 1.59e-04 CCTGCTCCTC CGCAGCCC TGGATTCTTT chrX:13757039-13757159 103 1.68e-04 CCCTAAGGAG CGCTGCCA TACTGTGTTC chr3L:3288560-3288680 43 1.68e-04 TCTACATAAC AGCTGCGG AAGTCTGAGC chrX:6375775-6375895 72 1.84e-04 CATGTGCTAA AGCAGCAA GGTTAGTTTT chr2R:12274368-12274488 10 1.94e-04 gcaagaagc agcagcag CATCCACCAG chr3L:8544891-8545011 70 2.03e-04 TGGTTCCGAT AGCCGCAA TGACTTATCG chr2R:22806982-22807102 37 2.19e-04 TTCCCTTTTA AGCCGCAG TGGCGCTCGA chr3L:6977540-6977660 105 2.56e-04 CTTTCCGTGT AGCCGCGA CAGTTGCA chr2L:19577296-19577416 42 2.88e-04 ACTATCGCGA GGCAGCAT AAAAATCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14602680-14602800 3.4e-06 39_[+2]_73 chr2R:18125793-18125913 3.4e-06 58_[+2]_54 chr3R:21373549-21373669 3.4e-06 44_[+2]_68 chr2L:14701600-14701720 3.4e-06 11_[+2]_101 chr2L:20097254-20097374 5.3e-06 107_[+2]_5 chrX:7571392-7571512 7.1e-06 107_[+2]_5 chr2L:21163533-21163653 1.1e-05 62_[+2]_50 chr2R:8914049-8914169 1.1e-05 48_[+2]_64 chrX:13334978-13335098 1.7e-05 78_[+2]_34 chrX:13128077-13128197 1.7e-05 58_[+2]_54 chr3R:18215425-18215545 1.7e-05 37_[+2]_75 chr3L:11350938-11351058 3.4e-05 77_[+2]_35 chr3L:7912044-7912164 3.4e-05 37_[+2]_75 chr3R:10161308-10161428 3.4e-05 22_[+2]_90 chrX:18635406-18635526 3.4e-05 59_[+2]_53 chr2R:21910009-21910129 3.4e-05 39_[+2]_73 chrX:3968818-3968938 3.8e-05 99_[+2]_13 chrX:11108301-11108421 3.8e-05 96_[+2]_16 chr2L:5045242-5045362 5.2e-05 37_[+2]_75 chr2R:20067230-20067350 5.2e-05 15_[+2]_97 chrX:1380462-1380582 5.2e-05 28_[+2]_84 chr2L:16743086-16743206 5.2e-05 89_[+2]_23 chr2L:9598432-9598552 5.8e-05 28_[+2]_84 chr3R:5300747-5300867 5.8e-05 110_[+2]_2 chr3L:1295818-1295938 6.5e-05 101_[+2]_11 chrX:4530006-4530126 6.5e-05 66_[+2]_46 chr2L:18921434-18921554 7e-05 109_[+2]_3 chr3R:12350615-12350735 7e-05 43_[+2]_69 chrX:3068424-3068544 8.2e-05 49_[+2]_63 chr3L:13189366-13189486 9.7e-05 87_[+2]_25 chr3R:23346999-23347119 0.00011 29_[+2]_83 chr2R:6656341-6656461 0.00011 15_[+2]_97 chr2R:14618660-14618780 0.00012 90_[+2]_22 chr3L:14071694-14071814 0.00012 71_[+2]_41 chr3L:11449045-11449165 0.00014 34_[+2]_78 chr2L:19377538-19377658 0.00014 19_[+2]_93 chr2L:18666033-18666153 0.00015 70_[+2]_42 chr3R:4220926-4221046 0.00016 84_[+2]_28 chrX:13757039-13757159 0.00017 102_[+2]_10 chr3L:3288560-3288680 0.00017 42_[+2]_70 chrX:6375775-6375895 0.00018 71_[+2]_41 chr2R:12274368-12274488 0.00019 9_[+2]_103 chr3L:8544891-8545011 0.0002 69_[+2]_43 chr2R:22806982-22807102 0.00022 36_[+2]_76 chr3L:6977540-6977660 0.00026 104_[+2]_8 chr2L:19577296-19577416 0.00029 41_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCWGCAM width=8 seqs=46 chrX:14602680-14602800 ( 40) GGCTGCAC 1 chr2R:18125793-18125913 ( 59) GGCTGCAC 1 chr3R:21373549-21373669 ( 45) GGCTGCAC 1 chr2L:14701600-14701720 ( 12) GGCTGCAC 1 chr2L:20097254-20097374 ( 108) GGCTGCCC 1 chrX:7571392-7571512 ( 108) GGCTGCGC 1 chr2L:21163533-21163653 ( 63) GGCAGCAC 1 chr2R:8914049-8914169 ( 49) GGCAGCAC 1 chrX:13334978-13335098 ( 79) GGCTGCAA 1 chrX:13128077-13128197 ( 59) GGCTGCAA 1 chr3R:18215425-18215545 ( 38) GGCTGCAA 1 chr3L:11350938-11351058 ( 78) GGCTGCCA 1 chr3L:7912044-7912164 ( 38) AGCTGCAC 1 chr3R:10161308-10161428 ( 23) GGCTGCCA 1 chrX:18635406-18635526 ( 60) AGCTGCAC 1 chr2R:21910009-21910129 ( 40) AGCTGCAC 1 chrX:3968818-3968938 ( 100) GGCAGCGC 1 chrX:11108301-11108421 ( 97) GGCTGCCG 1 chr2L:5045242-5045362 ( 38) AGCTGCCC 1 chr2R:20067230-20067350 ( 16) CGCTGCAC 1 chrX:1380462-1380582 ( 29) CGCTGCAC 1 chr2L:16743086-16743206 ( 90) GGCCGCGC 1 chr2L:9598432-9598552 ( 29) GGCAGCAA 1 chr3R:5300747-5300867 ( 111) GGCAGCAA 1 chr3L:1295818-1295938 ( 102) GGCAGCAG 1 chrX:4530006-4530126 ( 67) AGCTGCGC 1 chr2L:18921434-18921554 ( 110) CGCTGCCC 1 chr3R:12350615-12350735 ( 44) GGCCGCAA 1 chrX:3068424-3068544 ( 50) GGCAGCCA 1 chr3L:13189366-13189486 ( 88) AGCTGCAA 1 chr3R:23346999-23347119 ( 30) AGCTGCAG 1 chr2R:6656341-6656461 ( 16) GGCCGCCA 1 chr2R:14618660-14618780 ( 91) GGCAGCGG 1 chr3L:14071694-14071814 ( 72) GGCAGCGG 1 chr3L:11449045-11449165 ( 35) AGCTGCCA 1 chr2L:19377538-19377658 ( 20) CGCTGCAA 1 chr2L:18666033-18666153 ( 71) AGCAGCGC 1 chr3R:4220926-4221046 ( 85) CGCAGCCC 1 chrX:13757039-13757159 ( 103) CGCTGCCA 1 chr3L:3288560-3288680 ( 43) AGCTGCGG 1 chrX:6375775-6375895 ( 72) AGCAGCAA 1 chr2R:12274368-12274488 ( 10) AGCAGCAG 1 chr3L:8544891-8545011 ( 70) AGCCGCAA 1 chr2R:22806982-22807102 ( 37) AGCCGCAG 1 chr3L:6977540-6977660 ( 105) AGCCGCGA 1 chr2L:19577296-19577416 ( 42) GGCAGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.2e-006 1 -45 160 -1217 -1217 -1217 248 -1217 -1217 248 -1217 -1217 -9 -45 -1217 83 -1217 -1217 248 -1217 -1217 248 -1217 -1217 80 42 13 -1217 19 128 -4 -387 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.2e-006 0.326087 0.130435 0.543478 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.304348 0.130435 0.000000 0.565217 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.565217 0.239130 0.195652 0.000000 0.369565 0.434783 0.173913 0.021739 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCWGCAM MEME-2 regular expression -------------------------------------------------------------------------------- [GA]GC[TA]GC[AC][CA] -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-3 width = 8 sites = 21 llr = 216 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1:a:: pos.-specific C :a:9a:59 probability G 9:9::::: matrix T ::1:::51 bits 2.5 * 2.2 * * 2.0 ***** 1.7 ****** * Relative 1.5 ****** * Entropy 1.2 ****** * (14.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16800187-16800307 33 1.91e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr2R:23652362-23652482 64 1.91e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr2L:16816106-16816226 30 1.91e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr3R:12350615-12350735 32 1.91e-06 TGGAATAAGC GCGCCACC TACTGGCCGC chr2R:12274368-12274488 68 1.91e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2R:25085531-25085651 42 5.31e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chrX:17531929-17532049 27 5.31e-06 GCGGCGAGTG GCGCCATC AATTGGCAGG chr3R:16834770-16834890 98 5.31e-06 GAGCACATTG GCGCCATC TGTATTCCGT chrX:4530006-4530126 42 5.31e-06 CACGCTAGCA GCGCCATC TGACGGGGCA chr2L:7258237-7258357 76 5.31e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chr3L:3288560-3288680 27 5.31e-06 TTATTTTGTG GCGCCATC TACATAACAG chrX:16967549-16967669 49 8.71e-06 GGCGCTTGAG GCGCCACT CCTTGAGCGG chr3L:9614089-9614209 89 8.71e-06 CACTTTTGGG GCGCCACT AAGGTAAAAT chr3R:4220926-4221046 56 1.56e-05 AACTGATTCC GCTCCACC CTGCTGAGGA chr2L:10986178-10986298 54 1.56e-05 CTGCACACTA GCTCCACC TAGCGGCAGT chr2R:14434336-14434456 19 4.11e-05 TGTCACACCA GCGACATC TATGGAGTCA chr2L:4847309-4847429 16 4.11e-05 TTTTAGAGAT GCGCCACA GCTATCCAGA chr2R:20906658-20906778 25 4.11e-05 ACACATTGCA GCGACATC TATCGTCAAA chr3L:14071694-14071814 103 5.14e-05 cagttgaaaa gggccatc tctaatcagc chr3R:16748679-16748799 74 5.14e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chrX:7162659-7162779 33 5.14e-05 TGACCACCAA ACGCCACC TGTTGGCCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16800187-16800307 1.9e-06 32_[+3]_80 chr2R:23652362-23652482 1.9e-06 63_[+3]_49 chr2L:16816106-16816226 1.9e-06 29_[+3]_83 chr3R:12350615-12350735 1.9e-06 31_[+3]_81 chr2R:12274368-12274488 1.9e-06 67_[+3]_45 chr2R:25085531-25085651 5.3e-06 41_[+3]_71 chrX:17531929-17532049 5.3e-06 26_[+3]_86 chr3R:16834770-16834890 5.3e-06 97_[+3]_15 chrX:4530006-4530126 5.3e-06 41_[+3]_71 chr2L:7258237-7258357 5.3e-06 75_[+3]_37 chr3L:3288560-3288680 5.3e-06 26_[+3]_86 chrX:16967549-16967669 8.7e-06 48_[+3]_64 chr3L:9614089-9614209 8.7e-06 88_[+3]_24 chr3R:4220926-4221046 1.6e-05 55_[+3]_57 chr2L:10986178-10986298 1.6e-05 53_[+3]_59 chr2R:14434336-14434456 4.1e-05 18_[+3]_94 chr2L:4847309-4847429 4.1e-05 15_[+3]_97 chr2R:20906658-20906778 4.1e-05 24_[+3]_88 chr3L:14071694-14071814 5.1e-05 102_[+3]_10 chr3R:16748679-16748799 5.1e-05 73_[+3]_39 chrX:7162659-7162779 5.1e-05 32_[+3]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=21 chr2R:16800187-16800307 ( 33) GCGCCACC 1 chr2R:23652362-23652482 ( 64) GCGCCACC 1 chr2L:16816106-16816226 ( 30) GCGCCACC 1 chr3R:12350615-12350735 ( 32) GCGCCACC 1 chr2R:12274368-12274488 ( 68) GCGCCACC 1 chr2R:25085531-25085651 ( 42) GCGCCATC 1 chrX:17531929-17532049 ( 27) GCGCCATC 1 chr3R:16834770-16834890 ( 98) GCGCCATC 1 chrX:4530006-4530126 ( 42) GCGCCATC 1 chr2L:7258237-7258357 ( 76) GCGCCATC 1 chr3L:3288560-3288680 ( 27) GCGCCATC 1 chrX:16967549-16967669 ( 49) GCGCCACT 1 chr3L:9614089-9614209 ( 89) GCGCCACT 1 chr3R:4220926-4221046 ( 56) GCTCCACC 1 chr2L:10986178-10986298 ( 54) GCTCCACC 1 chr2R:14434336-14434456 ( 19) GCGACATC 1 chr2L:4847309-4847429 ( 16) GCGCCACA 1 chr2R:20906658-20906778 ( 25) GCGACATC 1 chr3L:14071694-14071814 ( 103) GGGCCATC 1 chr3R:16748679-16748799 ( 74) CCGCCATC 1 chrX:7162659-7162779 ( 33) ACGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.1e-006 -277 -191 234 -1104 -1104 241 -191 -1104 -1104 -1104 234 -174 -177 234 -1104 -1104 -1104 248 -1104 -1104 162 -1104 -1104 -1104 -1104 155 -1104 58 -277 226 -1104 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.1e-006 0.047619 0.047619 0.904762 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.000000 0.904762 0.095238 0.095238 0.904762 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.523810 0.000000 0.476190 0.047619 0.857143 0.000000 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-3 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGTRM MEME-4 width = 8 sites = 39 llr = 328 E-value = 4.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::173 pos.-specific C a:3::3:6 probability G ::7:a131 matrix T :::a:6:: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ***** Entropy 1.2 ***** (12.1 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel CAGTGTAC consensus C CGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3300489-3300609 99 1.10e-05 CATTAATTTT CAGTGTAC CTAATTTTTT chrX:4010996-4011116 112 1.10e-05 TCATTTCGCG CAGTGTAC A chr3R:13885177-13885297 79 1.10e-05 TCTGTTTTTT CAGTGTAC CTTATGCCAG chr2R:21091932-21092052 112 1.10e-05 TTTTTTTCGT CAGTGTAC G chr3R:8171669-8171789 107 2.32e-05 TTTTTTTTTC CAGTGCAC CTCCAA chrX:13128077-13128197 99 2.32e-05 GGGgtgagtg cagtgcac tgcttgctgg chrX:6621726-6621846 79 2.32e-05 CTATTTTGAA CAGTGCAC AAACGCTCAC chr3L:10350889-10351009 84 2.32e-05 ACATTTTTCG CAGTGCAC AAACAGACCC chr3L:1880845-1880965 112 2.32e-05 GTCTTTCTCT CAGTGCAC T chr3R:17400867-17400987 40 2.66e-05 AAGTAAATAA CAGTGCGC TTTATGCTTA chr4:696853-696973 113 3.75e-05 TAGGTGTTCA CACTGTAC chr3R:16718128-16718248 82 3.75e-05 ATTAAATGGT CACTGTAC CATTTTTCCG chrX:13630448-13630568 96 3.75e-05 TTGTTCTGAA CACTGTAC TTGTTTTTTT chr2L:5045242-5045362 111 4.36e-05 TTTCGACCGC CACTGTGC GA chr3R:23346999-23347119 108 4.36e-05 CCATGACAAC CACTGTGC GTTCG chr2L:19517458-19517578 87 4.36e-05 TGGACAGTTC CACTGTGC GGCGAAGCTT chr2L:10428685-10428805 57 4.36e-05 AAACTTGAAG CACTGTGC CGTTATCAAA chr3L:21509626-21509746 111 7.92e-05 TGTTTTCTGT CAGTGTAA CA chrX:5639251-5639371 87 7.92e-05 ATTAAATTTT CAGTGTAA CGCCACGGCA chr3L:13450283-13450403 31 7.92e-05 CTTATCAGCG CAGTGTAA TGTGGGGTTC chrX:771818-771938 40 7.92e-05 AACCAACTCT CAGTGGAC TAAACCTATT chr3L:12504170-12504290 55 9.36e-05 ATCTCTCGGC CAGTGTGA CCGTTCGACC chr3R:10564389-10564509 59 9.36e-05 CGAAAAAGCC CAGTGTGA CCATGTAGTC chrX:8125251-8125371 13 9.36e-05 CACTGTCGCA CAGTGGGC CCAATCGTCG chr3R:16573917-16574037 58 9.36e-05 AAATGGTCAT CAGTGTGA ACACCCCTTA chr3L:20471142-20471262 110 1.05e-04 CGATTTTTCT CAGTGCAA CGG chr3R:5758961-5759081 13 1.05e-04 ACCATTTGAG CAGTGCAA GAAATACCAC chr2R:20906658-20906778 104 1.05e-04 TAGATGGCGC CAGTGCAA CATTAAGGA chr2L:8528468-8528588 82 1.11e-04 GTCGGACAAG CAGTGCGA CTTGGGATGA chr2R:20257442-20257562 7 1.37e-04 CATGTA CACTGTAA TTAGAAATTA chr2R:18994143-18994263 33 1.37e-04 ATTGCCAAAG CACTGTAA GGATTATGTC chr3R:21493756-21493876 86 1.74e-04 GCATTTCTCA CAGTGTAG TTTCGGCCTC chr2L:18906733-18906853 1 1.74e-04 . CACTGGGC GAAAATAATG chr3R:4654668-4654788 85 1.74e-04 CTGTCTGTGG CAGTGAAC ATGCAGAGGC chr2R:23574927-23575047 111 1.74e-04 GGATTTTCCT CAGTGTAG CC chr3L:13006587-13006707 76 1.86e-04 TTAATTTTTT CAGTGTGG TGTGTGACCT chrX:9652116-9652236 12 2.30e-04 CTGATTGCTA CAGTGGGA CATCAGTAAG chrX:13334978-13335098 66 2.52e-04 AGTTTTGCAG CACTGAAC TCGAGGGCTG chr3R:14077174-14077294 87 2.52e-04 AGGATTGTAG CACTGAAC CTTTTGAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3300489-3300609 1.1e-05 98_[+4]_14 chrX:4010996-4011116 1.1e-05 111_[+4]_1 chr3R:13885177-13885297 1.1e-05 78_[+4]_34 chr2R:21091932-21092052 1.1e-05 111_[+4]_1 chr3R:8171669-8171789 2.3e-05 106_[+4]_6 chrX:13128077-13128197 2.3e-05 98_[+4]_14 chrX:6621726-6621846 2.3e-05 78_[+4]_34 chr3L:10350889-10351009 2.3e-05 83_[+4]_29 chr3L:1880845-1880965 2.3e-05 111_[+4]_1 chr3R:17400867-17400987 2.7e-05 39_[+4]_73 chr4:696853-696973 3.8e-05 112_[+4] chr3R:16718128-16718248 3.8e-05 81_[+4]_31 chrX:13630448-13630568 3.8e-05 95_[+4]_17 chr2L:5045242-5045362 4.4e-05 110_[+4]_2 chr3R:23346999-23347119 4.4e-05 107_[+4]_5 chr2L:19517458-19517578 4.4e-05 86_[+4]_26 chr2L:10428685-10428805 4.4e-05 56_[+4]_56 chr3L:21509626-21509746 7.9e-05 110_[+4]_2 chrX:5639251-5639371 7.9e-05 86_[+4]_26 chr3L:13450283-13450403 7.9e-05 30_[+4]_82 chrX:771818-771938 7.9e-05 39_[+4]_73 chr3L:12504170-12504290 9.4e-05 54_[+4]_58 chr3R:10564389-10564509 9.4e-05 58_[+4]_54 chrX:8125251-8125371 9.4e-05 12_[+4]_100 chr3R:16573917-16574037 9.4e-05 57_[+4]_55 chr3L:20471142-20471262 0.0001 109_[+4]_3 chr3R:5758961-5759081 0.0001 12_[+4]_100 chr2R:20906658-20906778 0.0001 103_[+4]_9 chr2L:8528468-8528588 0.00011 81_[+4]_31 chr2R:20257442-20257562 0.00014 6_[+4]_106 chr2R:18994143-18994263 0.00014 32_[+4]_80 chr3R:21493756-21493876 0.00017 85_[+4]_27 chr2L:18906733-18906853 0.00017 [+4]_112 chr3R:4654668-4654788 0.00017 84_[+4]_28 chr2R:23574927-23575047 0.00017 110_[+4]_2 chr3L:13006587-13006707 0.00019 75_[+4]_37 chrX:9652116-9652236 0.00023 11_[+4]_101 chrX:13334978-13335098 0.00025 65_[+4]_47 chr3R:14077174-14077294 0.00025 86_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGTRM width=8 seqs=39 chr3L:3300489-3300609 ( 99) CAGTGTAC 1 chrX:4010996-4011116 ( 112) CAGTGTAC 1 chr3R:13885177-13885297 ( 79) CAGTGTAC 1 chr2R:21091932-21092052 ( 112) CAGTGTAC 1 chr3R:8171669-8171789 ( 107) CAGTGCAC 1 chrX:13128077-13128197 ( 99) CAGTGCAC 1 chrX:6621726-6621846 ( 79) CAGTGCAC 1 chr3L:10350889-10351009 ( 84) CAGTGCAC 1 chr3L:1880845-1880965 ( 112) CAGTGCAC 1 chr3R:17400867-17400987 ( 40) CAGTGCGC 1 chr4:696853-696973 ( 113) CACTGTAC 1 chr3R:16718128-16718248 ( 82) CACTGTAC 1 chrX:13630448-13630568 ( 96) CACTGTAC 1 chr2L:5045242-5045362 ( 111) CACTGTGC 1 chr3R:23346999-23347119 ( 108) CACTGTGC 1 chr2L:19517458-19517578 ( 87) CACTGTGC 1 chr2L:10428685-10428805 ( 57) CACTGTGC 1 chr3L:21509626-21509746 ( 111) CAGTGTAA 1 chrX:5639251-5639371 ( 87) CAGTGTAA 1 chr3L:13450283-13450403 ( 31) CAGTGTAA 1 chrX:771818-771938 ( 40) CAGTGGAC 1 chr3L:12504170-12504290 ( 55) CAGTGTGA 1 chr3R:10564389-10564509 ( 59) CAGTGTGA 1 chrX:8125251-8125371 ( 13) CAGTGGGC 1 chr3R:16573917-16574037 ( 58) CAGTGTGA 1 chr3L:20471142-20471262 ( 110) CAGTGCAA 1 chr3R:5758961-5759081 ( 13) CAGTGCAA 1 chr2R:20906658-20906778 ( 104) CAGTGCAA 1 chr2L:8528468-8528588 ( 82) CAGTGCGA 1 chr2R:20257442-20257562 ( 7) CACTGTAA 1 chr2R:18994143-18994263 ( 33) CACTGTAA 1 chr3R:21493756-21493876 ( 86) CAGTGTAG 1 chr2L:18906733-18906853 ( 1) CACTGGGC 1 chr3R:4654668-4654788 ( 85) CAGTGAAC 1 chr2R:23574927-23575047 ( 111) CAGTGTAG 1 chr3L:13006587-13006707 ( 76) CAGTGTGG 1 chrX:9652116-9652236 ( 12) CAGTGGGA 1 chrX:13334978-13335098 ( 66) CACTGAAC 1 chr3R:14077174-14077294 ( 87) CACTGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.72248 E= 4.3e+001 -1193 248 -1193 -1193 162 -1193 -1193 -1193 -1193 78 195 -1193 -1193 -1193 -1193 165 -1193 -1193 248 -1193 -208 52 -80 83 104 -1193 90 -1193 4 172 -122 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 4.3e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.256410 0.102564 0.564103 0.666667 0.000000 0.333333 0.000000 0.333333 0.589744 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTRM MEME-4 regular expression -------------------------------------------------------------------------------- CA[GC]TG[TC][AG][CA] -------------------------------------------------------------------------------- Time 26.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCASGGC MEME-5 width = 8 sites = 5 llr = 61 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C :aa:4::a probability G a::26aa: matrix T :::::::: bits 2.5 *** *** 2.2 *** *** 2.0 *** *** 1.7 *** *** Relative 1.5 *** **** Entropy 1.2 *** **** (17.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGGGC consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1108386-1108506 17 1.91e-06 TGACTGCGAT GCCAGGGC TGACGAGAGG chrX:5285927-5286047 24 1.91e-06 CGCTTCGTTT GCCAGGGC ATATTTTTTT chr3L:21509626-21509746 89 3.83e-06 TTATACTCAT GCCACGGC TACATGTTTT chrX:5639251-5639371 96 3.83e-06 TCAGTGTAAC GCCACGGC ATCTAAGGAT chrX:7162659-7162779 46 4.88e-06 CCACCTGTTG GCCGGGGC AGTTTCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1108386-1108506 1.9e-06 16_[+5]_96 chrX:5285927-5286047 1.9e-06 23_[+5]_89 chr3L:21509626-21509746 3.8e-06 88_[+5]_24 chrX:5639251-5639371 3.8e-06 95_[+5]_17 chrX:7162659-7162779 4.9e-06 45_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCASGGC width=8 seqs=5 chr2L:1108386-1108506 ( 17) GCCAGGGC 1 chrX:5285927-5286047 ( 24) GCCAGGGC 1 chr3L:21509626-21509746 ( 89) GCCACGGC 1 chrX:5639251-5639371 ( 96) GCCACGGC 1 chrX:7162659-7162779 ( 46) GCCGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.5e+005 -897 -897 248 -897 -897 248 -897 -897 -897 248 -897 -897 130 -897 16 -897 -897 116 175 -897 -897 -897 248 -897 -897 -897 248 -897 -897 248 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.5e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCASGGC MEME-5 regular expression -------------------------------------------------------------------------------- GCC[AG][GC]GGC -------------------------------------------------------------------------------- Time 32.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21091932-21092052 5.05e-02 111_[+4(1.10e-05)]_1 chr2R:20906658-20906778 4.80e-07 24_[+3(4.11e-05)]_63_[+1(3.40e-06)]_\ 17 chrX:7162659-7162779 4.32e-06 32_[+3(5.14e-05)]_5_[+5(4.88e-06)]_\ 21_[+1(3.52e-05)]_38 chr3R:16573917-16574037 1.56e-01 57_[+4(9.36e-05)]_55 chr3L:12037945-12038065 7.26e-01 120 chr3L:16768398-16768518 6.38e-01 120 chr2R:23003270-23003390 3.41e-01 120 chr3L:3288560-3288680 3.39e-06 26_[+3(5.31e-06)]_45_[+1(3.40e-06)]_\ 33 chr2R:12274368-12274488 4.84e-08 38_[+1(3.40e-06)]_21_[+3(1.91e-06)]_\ 45 chr3L:1880845-1880965 1.56e-02 111_[+4(2.32e-05)]_1 chr2R:21178800-21178920 1.80e-02 58_[+1(1.96e-05)]_54 chr3L:905156-905276 1.27e-01 120 chr3L:16385958-16386078 1.45e-02 9_[+5(7.14e-05)]_103 chr2L:12351032-12351152 5.31e-01 120 chr2L:14094773-14094893 2.79e-02 120 chr2L:14701600-14701720 1.25e-04 11_[+2(3.40e-06)]_101 chrX:771818-771938 2.11e-01 39_[+4(7.92e-05)]_73 chr3R:10636169-10636289 9.03e-01 120 chr3R:21373549-21373669 5.87e-05 44_[+2(3.40e-06)]_68 chr3L:20771109-20771229 3.80e-01 120 chrX:20507866-20507986 2.67e-05 17_[+3(8.89e-05)]_30_[+1(3.52e-05)]_\ 57 chr3L:9614089-9614209 1.28e-03 88_[+3(8.71e-06)]_24 chr3R:13885177-13885297 2.19e-02 78_[+4(1.10e-05)]_34 chr2R:23574927-23575047 6.07e-02 120 chr2R:23713266-23713386 1.73e-01 120 chr2L:3587475-3587595 5.32e-01 120 chr3L:11484650-11484770 8.64e-01 120 chr3R:4654668-4654788 3.32e-02 120 chrX:3288934-3289054 2.54e-03 76_[+1(1.05e-05)]_36 chr3R:16748679-16748799 2.56e-04 52_[+1(3.40e-06)]_13_[+3(5.14e-05)]_\ 39 chr3L:8544891-8545011 2.18e-01 120 chr2R:18994143-18994263 6.63e-02 120 chr3R:20008805-20008925 2.34e-01 120 chr2L:18906733-18906853 2.05e-01 120 chr3R:31706321-31706441 4.72e-02 27_[+1(1.96e-05)]_85 chr2R:21910009-21910129 2.87e-02 39_[+2(3.36e-05)]_73 chr2L:3852272-3852392 9.99e-01 120 chr2L:8746368-8746488 6.94e-01 120 chr3R:15347904-15348024 9.74e-02 120 chr3R:29089816-29089936 9.74e-01 120 chr2L:10986178-10986298 2.58e-03 53_[+3(1.56e-05)]_59 chr3L:13929289-13929409 2.27e-01 120 chr3L:13189366-13189486 3.27e-01 87_[+2(9.68e-05)]_25 chr2L:8528468-8528588 1.75e-01 120 chr2L:3472386-3472506 2.16e-06 29_[+1(3.40e-06)]_44_[+3(1.91e-06)]_\ 31 chrX:16967549-16967669 1.80e-05 48_[+3(8.71e-06)]_26_[+1(1.34e-05)]_\ 30 chr2L:15248682-15248802 4.87e-01 120 chr3R:27937907-27938027 5.00e-01 120 chr3R:10628416-10628536 8.63e-01 120 chr3L:13197650-13197770 5.09e-01 120 chr2L:10428685-10428805 1.80e-01 56_[+4(4.36e-05)]_56 chrX:6615550-6615670 6.78e-01 120 chrX:9652116-9652236 8.05e-03 120 chr3L:3851948-3852068 1.06e-01 120 chr3R:5300747-5300867 6.15e-04 63_[+1(4.87e-05)]_9_[+2(5.79e-05)]_\ 22_[+2(5.79e-05)]_2 chr2L:7985065-7985185 1.96e-01 120 chr3L:12062958-12063078 9.36e-01 120 chr3L:13450283-13450403 8.82e-02 30_[+4(7.92e-05)]_82 chr3R:26900138-26900258 7.85e-01 120 chrX:11108301-11108421 2.62e-02 96_[+2(3.84e-05)]_16 chr3L:745643-745763 4.17e-01 120 chr3L:14999668-14999788 6.12e-01 120 chr3R:24817241-24817361 8.31e-01 120 chr3L:11285204-11285324 8.43e-01 120 chr2L:3598606-3598726 8.45e-01 120 chr2R:18125793-18125913 3.37e-05 53_[+5(1.91e-06)]_59 chrX:17510305-17510425 8.36e-01 120 chr2L:16743086-16743206 2.66e-04 63_[+1(3.40e-06)]_18_[+2(5.16e-05)]_\ 23 chrX:4498396-4498516 9.33e-01 120 chr3R:24753625-24753745 9.99e-01 120 chrX:1380462-1380582 3.89e-05 28_[+2(5.16e-05)]_84 chr3R:18215425-18215545 7.06e-03 37_[+2(1.68e-05)]_75 chrX:13630448-13630568 2.74e-01 95_[+4(3.75e-05)]_17 chr3L:11328380-11328500 7.47e-01 120 chr3L:1216625-1216745 1.53e-01 120 chr3R:12350615-12350735 1.09e-05 31_[+3(1.91e-06)]_4_[+2(7.01e-05)]_\ 69 chr3R:13999682-13999802 3.40e-01 120 chrX:18635406-18635526 8.40e-04 48_[+1(3.40e-06)]_3_[+2(3.36e-05)]_\ 21_[+1(5.27e-06)]_24 chr3R:14077174-14077294 2.25e-01 120 chrX:10601760-10601880 2.40e-01 120 chr2R:8751616-8751736 5.17e-01 120 chr2L:16816106-16816226 1.83e-03 29_[+3(1.91e-06)]_83 chr3L:14071694-14071814 1.11e-03 102_[+3(5.14e-05)]_10 chr2L:4847309-4847429 1.44e-03 15_[+3(4.11e-05)]_97 chr2R:6656341-6656461 2.09e-03 32_[+1(4.54e-05)]_80 chr3R:10100698-10100818 3.71e-03 52_[+1(5.27e-06)]_60 chr3L:3078593-3078713 7.19e-01 120 chrX:7571392-7571512 5.01e-03 107_[+2(7.14e-06)]_5 chrX:3367431-3367551 9.01e-01 120 chr2L:19517458-19517578 8.01e-02 86_[+4(4.36e-05)]_26 chr2R:16170810-16170930 1.64e-01 120 chr3L:10350889-10351009 2.07e-02 83_[+4(2.32e-05)]_29 chrX:5883542-5883662 5.68e-03 41_[+1(4.54e-05)]_71 chr3L:5988767-5988887 2.99e-01 120 chr3L:10428206-10428326 9.35e-01 120 chr3L:613718-613838 2.27e-01 120 chr3R:16718128-16718248 1.28e-01 81_[+4(3.75e-05)]_31 chr2L:1150662-1150782 3.11e-02 120 chr2L:20097254-20097374 6.81e-03 107_[+2(5.27e-06)]_5 chrX:7710937-7711057 1.74e-03 29_[+1(3.40e-06)]_38_[+1(3.40e-06)]_\ 37 chrX:5639251-5639371 8.92e-04 86_[+4(7.92e-05)]_1_[+5(3.83e-06)]_\ 17 chrX:6621726-6621846 5.86e-02 78_[+4(2.32e-05)]_34 chr2R:13968164-13968284 1.35e-03 52_[+1(3.40e-06)]_60 chr3R:9494287-9494407 3.26e-01 120 chr3R:29039787-29039907 5.52e-01 120 chr3L:8445089-8445209 3.00e-01 120 chrX:13757039-13757159 2.00e-01 120 chr3L:10206323-10206443 1.00e+00 120 chrX:11548859-11548979 3.14e-01 120 chr2L:1428478-1428598 1.00e+00 120 chr2L:10543509-10543629 5.80e-01 120 chrX:8125251-8125371 3.13e-03 12_[+4(9.36e-05)]_100 chr2L:7258237-7258357 1.17e-04 21_[+3(1.56e-05)]_46_[+3(5.31e-06)]_\ 37 chr3R:25004899-25005019 9.32e-01 120 chr2R:20257442-20257562 5.46e-01 120 chr3R:23346999-23347119 1.81e-03 107_[+4(4.36e-05)]_5 chrX:12242494-12242614 9.81e-01 120 chr2L:3566714-3566834 2.63e-01 120 chrX:6375775-6375895 3.60e-01 120 chrX:1052813-1052933 2.40e-01 120 chr3R:31744155-31744275 5.47e-01 120 chrX:3968818-3968938 2.13e-03 99_[+2(3.84e-05)]_13 chr2R:14618660-14618780 4.51e-04 120 chr3L:797017-797137 4.89e-01 120 chr3L:9028137-9028257 9.33e-01 120 chr2L:7270378-7270498 5.06e-01 120 chr2R:23652362-23652482 5.30e-06 24_[+3(5.31e-06)]_31_[+3(1.91e-06)]_\ 49 chr3R:5758961-5759081 1.80e-01 120 chr2L:19377538-19377658 1.06e-02 120 chrX:14602680-14602800 1.53e-04 39_[+2(3.40e-06)]_73 chr2R:13055002-13055122 1.87e-01 120 chrX:7617037-7617157 5.73e-01 120 chrX:3068424-3068544 1.57e-01 49_[+2(8.18e-05)]_63 chrX:4530006-4530126 9.88e-05 41_[+3(5.31e-06)]_17_[+2(6.47e-05)]_\ 33_[+3(1.94e-05)]_5 chrX:13128077-13128197 3.03e-04 58_[+2(1.68e-05)]_32_[+4(2.32e-05)]_\ 14 chr3R:27677206-27677326 8.73e-01 120 chr3R:8171669-8171789 4.82e-02 106_[+4(2.32e-05)]_6 chr2L:10442084-10442204 7.14e-01 120 chr2R:15381296-15381416 2.62e-01 111_[+5(7.14e-05)]_1 chr3R:30413952-30414072 4.08e-01 120 chr3L:15563038-15563158 1.09e-01 120 chr2R:9286625-9286745 7.43e-01 120 chr3R:28631957-28632077 6.25e-01 120 chr2R:16800187-16800307 8.55e-05 32_[+3(1.91e-06)]_25_[+1(2.57e-05)]_\ 30_[+1(5.27e-06)]_9 chr3L:20471142-20471262 1.64e-01 120 chr2L:5238407-5238527 5.25e-01 120 chr3L:11993144-11993264 6.87e-02 120 chr3L:6743142-6743262 1.35e-01 120 chr2L:8834928-8835048 6.04e-01 120 chr2L:1456339-1456459 9.86e-01 120 chr3L:7151927-7152047 9.16e-01 120 chr3L:772355-772475 7.17e-01 120 chr3R:10564389-10564509 1.54e-01 58_[+4(9.36e-05)]_54 chr2L:5245708-5245828 2.56e-02 120 chrX:5285927-5286047 6.58e-03 23_[+5(1.91e-06)]_89 chr3L:1691158-1691278 3.76e-01 120 chr2L:3861497-3861617 8.34e-01 120 chr3R:21493756-21493876 2.66e-02 120 chr2L:13073908-13074028 5.18e-01 120 chr2L:8602717-8602837 9.92e-01 120 chrX:16822227-16822347 8.34e-01 120 chr3R:9605212-9605332 2.21e-01 120 chr2L:10698162-10698282 9.03e-01 120 chrX:8777302-8777422 5.83e-01 120 chr3L:12504170-12504290 8.20e-02 54_[+4(9.36e-05)]_58 chrX:2149668-2149788 2.58e-02 120 chr3R:16834770-16834890 1.96e-04 46_[+3(4.11e-05)]_43_[+3(5.31e-06)]_\ 15 chr2L:21787098-21787218 6.25e-02 120 chr3R:10161308-10161428 9.79e-05 22_[+2(3.36e-05)]_90 chr2R:22548206-22548326 3.55e-02 120 chr3L:15311605-15311725 8.47e-01 120 chr3R:25880375-25880495 6.89e-02 54_[+1(2.57e-05)]_58 chr2L:6339659-6339779 6.33e-01 120 chr3L:7249324-7249444 9.30e-01 120 chr3R:16212929-16213049 3.78e-01 120 chr3L:1029753-1029873 4.67e-01 120 chr3L:1295818-1295938 3.98e-03 101_[+2(6.47e-05)]_11 chr2L:9576802-9576922 7.02e-03 42_[+1(4.87e-05)]_23_[+1(5.27e-06)]_\ 39 chr2R:19669824-19669944 4.12e-01 120 chrX:13368276-13368396 2.00e-01 120 chr3L:21509626-21509746 5.31e-04 88_[+5(3.83e-06)]_14_[+4(7.92e-05)]_\ 2 chr3L:18250813-18250933 1.89e-01 120 chr3L:8629118-8629238 9.88e-01 120 chrX:12463086-12463206 1.86e-01 120 chrX:16782273-16782393 4.41e-04 87_[+1(1.05e-05)]_25 chr3R:18906462-18906582 9.64e-01 120 chrX:4010996-4011116 6.90e-02 111_[+4(1.10e-05)]_1 chr2R:23940214-23940334 1.72e-01 101_[+1(3.52e-05)]_11 chrX:17531929-17532049 1.07e-04 26_[+3(5.31e-06)]_59_[+3(1.91e-06)]_\ 19 chr2L:14519400-14519520 2.48e-01 120 chr3R:9038810-9038930 5.57e-01 120 chr3L:9367029-9367149 4.15e-01 120 chr3R:30797468-30797588 6.52e-01 120 chr2L:1462223-1462343 9.05e-01 120 chr3L:17242234-17242354 8.05e-01 120 chrX:17751838-17751958 1.93e-03 88_[+1(7.19e-06)]_24 chr3R:26172188-26172308 7.32e-01 120 chr2R:25085531-25085651 4.52e-04 41_[+3(5.31e-06)]_71 chr3R:26654685-26654805 4.66e-01 120 chr2R:8914049-8914169 2.52e-03 48_[+2(1.06e-05)]_64 chr2L:19577296-19577416 7.29e-02 120 chrX:16773020-16773140 8.08e-01 120 chr3R:26052454-26052574 6.69e-01 120 chr2L:21163533-21163653 6.69e-03 62_[+2(1.06e-05)]_20_[+2(2.40e-05)]_\ 22 chr3R:4220926-4221046 8.74e-05 14_[+5(7.14e-05)]_33_[+3(1.56e-05)]_\ 57 chr2R:14434336-14434456 4.88e-06 18_[+3(4.11e-05)]_52_[+1(5.27e-06)]_\ 34 chr3L:12136775-12136895 9.98e-01 120 chr3L:7912044-7912164 8.48e-02 37_[+2(3.36e-05)]_75 chr2R:11738661-11738781 9.98e-01 120 chr2L:20650010-20650130 9.15e-01 120 chrX:18923645-18923765 9.35e-01 120 chr3R:31064787-31064907 4.22e-01 120 chrX:13334978-13335098 2.58e-03 78_[+2(1.68e-05)]_34 chr2L:16709753-16709873 9.75e-01 120 chrX:11629143-11629263 1.84e-01 120 chr2R:18676555-18676675 3.49e-01 120 chr3L:3300489-3300609 1.08e-01 98_[+4(1.10e-05)]_14 chrX:19667050-19667170 6.94e-02 120 chr2R:20153981-20154101 1.42e-02 120 chr2L:9598432-9598552 3.82e-03 28_[+2(5.79e-05)]_84 chr2L:18666033-18666153 4.11e-02 120 chr2L:1108386-1108506 1.35e-03 16_[+5(1.91e-06)]_96 chr3R:29522351-29522471 2.76e-01 120 chr3L:13006587-13006707 1.94e-01 120 chr3L:14545436-14545556 8.60e-01 120 chrX:4010312-4010432 3.79e-01 120 chrX:15615531-15615651 7.36e-01 120 chr3L:6977540-6977660 9.54e-03 120 chr2L:6830470-6830590 8.84e-01 120 chr3R:25489208-25489328 1.17e-01 120 chr2R:22806982-22807102 3.07e-02 120 chr2L:18921434-18921554 6.20e-03 77_[+1(8.24e-05)]_24_[+2(7.01e-05)]_\ 3 chr2R:20067230-20067350 2.29e-02 15_[+2(5.16e-05)]_97 chr3L:12277496-12277616 4.59e-02 120 chr3L:11350938-11351058 3.21e-03 77_[+2(3.36e-05)]_35 chr3R:23356118-23356238 9.22e-01 120 chr3L:18226128-18226248 5.71e-01 120 chr3R:17400867-17400987 2.07e-01 39_[+4(2.66e-05)]_73 chr3L:15787511-15787631 9.70e-01 120 chr3L:7614380-7614500 8.71e-01 120 chr3R:23709678-23709798 2.98e-02 46_[+1(1.96e-05)]_66 chr3R:29591569-29591689 1.78e-02 69_[+5(7.14e-05)]_43 chr3L:11449045-11449165 1.05e-01 120 chr2R:21503258-21503378 2.10e-01 120 chr3L:16615467-16615587 5.74e-02 120 chr2L:10356625-10356745 8.70e-01 120 chr3L:12053838-12053958 5.68e-01 120 chr2L:5045242-5045362 1.58e-04 37_[+2(5.16e-05)]_65_[+4(4.36e-05)]_\ 2 chr3R:17551240-17551360 8.96e-01 120 chr4:696853-696973 1.65e-02 112_[+4(3.75e-05)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************