******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/tap.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:793005-793125 1.0000 120 chr2L:18925518-18925638 1.0000 120 chr3L:7945345-7945465 1.0000 120 chrX:17810423-17810543 1.0000 120 chr3L:782847-782967 1.0000 120 chr3L:13210183-13210303 1.0000 120 chr2L:4349568-4349688 1.0000 120 chr2L:17587409-17587529 1.0000 120 chr2L:19095917-19096037 1.0000 120 chr2R:14041294-14041414 1.0000 120 chr3R:15672457-15672577 1.0000 120 chr3L:5882090-5882210 1.0000 120 chr3L:5970952-5971072 1.0000 120 chr3R:16255436-16255556 1.0000 120 chr2R:6586145-6586265 1.0000 120 chr2R:18341016-18341136 1.0000 120 chr2L:18891564-18891684 1.0000 120 chr2R:12544383-12544503 1.0000 120 chrX:8727063-8727183 1.0000 120 chr3R:17582985-17583105 1.0000 120 chr3L:1868972-1869092 1.0000 120 chr2R:16368837-16368957 1.0000 120 chr2L:14457623-14457743 1.0000 120 chr3R:18804665-18804785 1.0000 120 chr3L:3976587-3976707 1.0000 120 chr3L:5877138-5877258 1.0000 120 chr2L:18928027-18928147 1.0000 120 chr2L:3681469-3681589 1.0000 120 chr2R:14432619-14432739 1.0000 120 chr3L:4534089-4534209 1.0000 120 chr2L:21324665-21324785 1.0000 120 chr2L:11474724-11474844 1.0000 120 chr3L:12050754-12050874 1.0000 120 chr3L:15494336-15494456 1.0000 120 chr2R:14815986-14816106 1.0000 120 chr2R:11232615-11232735 1.0000 120 chrX:10233224-10233344 1.0000 120 chr3R:8619202-8619322 1.0000 120 chr2L:16716876-16716996 1.0000 120 chr3L:15044070-15044190 1.0000 120 chr3L:5878881-5879001 1.0000 120 chr3R:5103668-5103788 1.0000 120 chr3R:16630146-16630266 1.0000 120 chr3R:28045234-28045354 1.0000 120 chr3L:17364334-17364454 1.0000 120 chr3L:14574815-14574935 1.0000 120 chr3R:27195812-27195932 1.0000 120 chrX:8727875-8727995 1.0000 120 chr2R:11426856-11426976 1.0000 120 chr3L:4720655-4720775 1.0000 120 chr2L:3849757-3849877 1.0000 120 chr2R:14788096-14788216 1.0000 120 chr2R:23739333-23739453 1.0000 120 chr3L:18370889-18371009 1.0000 120 chr2L:6247564-6247684 1.0000 120 chr3L:13476212-13476332 1.0000 120 chr3L:882522-882642 1.0000 120 chr3L:22381848-22381968 1.0000 120 chr3L:34805-34925 1.0000 120 chr3R:28573719-28573839 1.0000 120 chr3L:12085418-12085538 1.0000 120 chr2R:20929630-20929750 1.0000 120 chr3L:17113367-17113487 1.0000 120 chr2R:23869473-23869593 1.0000 120 chr3L:7955327-7955447 1.0000 120 chr2L:13258820-13258940 1.0000 120 chr3L:13084627-13084747 1.0000 120 chr3L:22883800-22883920 1.0000 120 chr3L:11637105-11637225 1.0000 120 chr3R:12451535-12451655 1.0000 120 chr3L:18331575-18331695 1.0000 120 chr2L:5240704-5240824 1.0000 120 chr3R:9025079-9025199 1.0000 120 chr3L:2575392-2575512 1.0000 120 chr2L:11420295-11420415 1.0000 120 chr3R:14116276-14116396 1.0000 120 chrX:5989517-5989637 1.0000 120 chr2L:19098163-19098283 1.0000 120 chr3L:15089340-15089460 1.0000 120 chr2L:20204787-20204907 1.0000 120 chrX:8295599-8295719 1.0000 120 chr3L:776779-776899 1.0000 120 chr3L:5978527-5978647 1.0000 120 chr3L:11414204-11414324 1.0000 120 chr3R:25630703-25630823 1.0000 120 chr3L:4209817-4209937 1.0000 120 chrX:6067680-6067800 1.0000 120 chr2L:521478-521598 1.0000 120 chr2L:3127962-3128082 1.0000 120 chrX:9911863-9911983 1.0000 120 chrX:9119380-9119500 1.0000 120 chrX:8837314-8837434 1.0000 120 chr3L:8445155-8445275 1.0000 120 chr3R:14095523-14095643 1.0000 120 chr2R:20761967-20762087 1.0000 120 chr3L:14672487-14672607 1.0000 120 chr3L:9424598-9424718 1.0000 120 chrX:11841779-11841899 1.0000 120 chr3R:7972286-7972406 1.0000 120 chr3R:30759128-30759248 1.0000 120 chrX:11710376-11710496 1.0000 120 chr2R:23586590-23586710 1.0000 120 chr2R:19874641-19874761 1.0000 120 chr2R:14803505-14803625 1.0000 120 chr3R:22886916-22887036 1.0000 120 chr3L:6807609-6807729 1.0000 120 chr3L:10659980-10660100 1.0000 120 chr3R:31884679-31884799 1.0000 120 chr2L:13349431-13349551 1.0000 120 chr3R:14436526-14436646 1.0000 120 chr2L:20939816-20939936 1.0000 120 chr2R:23573770-23573890 1.0000 120 chr3L:7086815-7086935 1.0000 120 chr3R:30934061-30934181 1.0000 120 chr2L:1473342-1473462 1.0000 120 chr2L:14599541-14599661 1.0000 120 chr3L:815381-815501 1.0000 120 chr3L:6140288-6140408 1.0000 120 chr2L:19139015-19139135 1.0000 120 chr3L:16697217-16697337 1.0000 120 chr2R:18994190-18994310 1.0000 120 chr3R:21837202-21837322 1.0000 120 chr2R:6153392-6153512 1.0000 120 chr2L:4292758-4292878 1.0000 120 chr3L:3786919-3787039 1.0000 120 chr2R:19725807-19725927 1.0000 120 chr3L:22847698-22847818 1.0000 120 chr2R:13996734-13996854 1.0000 120 chr3L:18786231-18786351 1.0000 120 chr3L:21042113-21042233 1.0000 120 chr2L:7492066-7492186 1.0000 120 chr2R:17533802-17533922 1.0000 120 chrX:17726685-17726805 1.0000 120 chr3R:30235330-30235450 1.0000 120 chr3R:10681692-10681812 1.0000 120 chrX:11848712-11848832 1.0000 120 chrX:11379263-11379383 1.0000 120 chr3L:2532551-2532671 1.0000 120 chrX:14727698-14727818 1.0000 120 chr2L:5113629-5113749 1.0000 120 chrX:6542473-6542593 1.0000 120 chr2L:18906785-18906905 1.0000 120 chr2L:6948862-6948982 1.0000 120 chr2L:4133139-4133259 1.0000 120 chr3R:28904346-28904466 1.0000 120 chrX:17501677-17501797 1.0000 120 chr3R:12562122-12562242 1.0000 120 chr3L:7962168-7962288 1.0000 120 chr3R:16510267-16510387 1.0000 120 chr3L:20710670-20710790 1.0000 120 chr3R:17955864-17955984 1.0000 120 chr3R:13907800-13907920 1.0000 120 chr3R:29005016-29005136 1.0000 120 chr2R:21883220-21883340 1.0000 120 chr3R:29581563-29581683 1.0000 120 chr3R:9888844-9888964 1.0000 120 chr3L:11444233-11444353 1.0000 120 chrX:12765849-12765969 1.0000 120 chrX:3024674-3024794 1.0000 120 chr3L:19216514-19216634 1.0000 120 chr2L:14011774-14011894 1.0000 120 chr3R:10449133-10449253 1.0000 120 chr3L:764420-764540 1.0000 120 chr4:1199395-1199515 1.0000 120 chr3L:7592274-7592394 1.0000 120 chr3L:11285254-11285374 1.0000 120 chrX:3455539-3455659 1.0000 120 chrX:15121951-15122071 1.0000 120 chr2R:19728178-19728298 1.0000 120 chr3L:20612989-20613109 1.0000 120 chr3R:7892829-7892949 1.0000 120 chr3R:22220930-22221050 1.0000 120 chr3R:6233133-6233253 1.0000 120 chr2L:7158935-7159055 1.0000 120 chr3R:9083512-9083632 1.0000 120 chr3R:9237929-9238049 1.0000 120 chr3L:960694-960814 1.0000 120 chr3R:26185405-26185525 1.0000 120 chr2L:9694039-9694159 1.0000 120 chr3R:27274689-27274809 1.0000 120 chr3R:11661903-11662023 1.0000 120 chr3L:19338364-19338484 1.0000 120 chr3L:18114027-18114147 1.0000 120 chrX:13109875-13109995 1.0000 120 chr2R:14487661-14487781 1.0000 120 chrX:17293534-17293654 1.0000 120 chr2R:6171602-6171722 1.0000 120 chr3L:3380612-3380732 1.0000 120 chr3L:14194220-14194340 1.0000 120 chr2L:19884569-19884689 1.0000 120 chrX:13764501-13764621 1.0000 120 chr3R:27919533-27919653 1.0000 120 chr3L:3395493-3395613 1.0000 120 chr3R:9430480-9430600 1.0000 120 chr3R:23969553-23969673 1.0000 120 chr3L:11291689-11291809 1.0000 120 chr3R:17007484-17007604 1.0000 120 chrX:14634886-14635006 1.0000 120 chr2R:18435185-18435305 1.0000 120 chr3L:917329-917449 1.0000 120 chr3L:17310623-17310743 1.0000 120 chrX:19453281-19453401 1.0000 120 chr2L:14405202-14405322 1.0000 120 chr3R:12406363-12406483 1.0000 120 chr3L:1083434-1083554 1.0000 120 chr3L:12058579-12058699 1.0000 120 chr3L:19924779-19924899 1.0000 120 chr3L:9566987-9567107 1.0000 120 chr2R:20195235-20195355 1.0000 120 chr3R:14077193-14077313 1.0000 120 chr2R:22529758-22529878 1.0000 120 chr3R:19014967-19015087 1.0000 120 chr2L:9614143-9614263 1.0000 120 chr3R:13893001-13893121 1.0000 120 chr2R:16581749-16581869 1.0000 120 chr3R:23181132-23181252 1.0000 120 chrX:13226572-13226692 1.0000 120 chr2L:18966995-18967115 1.0000 120 chr2L:7434942-7435062 1.0000 120 chr3L:11107569-11107689 1.0000 120 chr2L:19134980-19135100 1.0000 120 chr3R:26105996-26106116 1.0000 120 chrX:3019750-3019870 1.0000 120 chr3L:15275564-15275684 1.0000 120 chr3R:6368713-6368833 1.0000 120 chrX:10573654-10573774 1.0000 120 chr3L:14411069-14411189 1.0000 120 chr3R:26235156-26235276 1.0000 120 chr3R:10354057-10354177 1.0000 120 chr2L:1916593-1916713 1.0000 120 chr3R:28677031-28677151 1.0000 120 chr2R:8798378-8798498 1.0000 120 chr3L:11351520-11351640 1.0000 120 chrX:14679330-14679450 1.0000 120 chr3L:1151805-1151925 1.0000 120 chr3L:18102192-18102312 1.0000 120 chr3R:20555179-20555299 1.0000 120 chr3R:16476603-16476723 1.0000 120 chr3L:20517030-20517150 1.0000 120 chr3R:26333448-26333568 1.0000 120 chrX:9135209-9135329 1.0000 120 chrX:6615597-6615717 1.0000 120 chr3R:15983707-15983827 1.0000 120 chr3R:11852041-11852161 1.0000 120 chr2L:14141370-14141490 1.0000 120 chrX:3397018-3397138 1.0000 120 chr2L:11736107-11736227 1.0000 120 chr2R:14161303-14161423 1.0000 120 chr2L:868442-868562 1.0000 120 chr3L:16873234-16873354 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_tap/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/tap.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.333 C 0.163 G 0.169 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.333 C 0.163 G 0.169 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CMACTSSC MEME-1 width = 8 sites = 26 llr = 244 E-value = 2.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :67::::: pos.-specific C a41a176a probability G ::2:334: matrix T ::::7::: bits 2.6 * * * 2.4 * * * 2.1 * * * 1.8 * * * Relative 1.6 * * *** Entropy 1.3 * * *** (13.5 bits) 1.0 ** * *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAACTCCC consensus CG GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9694039-9694159 7 2.09e-06 ATCACC CCACTCCC ACCCAGCTGG chr3L:960694-960814 31 7.42e-06 GTGTAATTTA CAACTCCC AAGCTACAAA chr3L:882522-882642 101 7.42e-06 AATAACAGTG CAACTCCC AAACTGTAAG chrX:8727875-8727995 103 7.42e-06 TTAACTGTGA CCACGCCC CCACACACAC chr3L:18331575-18331695 1 1.07e-05 . CCACTCGC ACAATAAGAA chr2R:14041294-14041414 7 1.07e-05 CCATTT CCACTCGC TAGGCGAGTT chr3R:28677031-28677151 96 1.28e-05 TTTTTCATGC CAACGCCC ATGTATGTAC chr2L:19139015-19139135 111 1.28e-05 GCGGCGCATT CAACGCCC TG chrX:8295599-8295719 10 2.10e-05 aaacctaaa caactcgc aatagatatt chr3L:34805-34925 70 2.10e-05 GCCACAATGG CAGCTCCC TTGGACTTTC chr2R:14815986-14816106 112 2.21e-05 CAATTTACCA CCGCTCGC T chr3R:15672457-15672577 72 2.21e-05 TGTTGATTTT CCGCTCGC CGAAACGAGT chr3L:764420-764540 16 2.76e-05 GGGCACGGCC CCACTGCC AAGTTCCGAC chr2L:18891564-18891684 106 2.76e-05 TGGCCGCAGT CAACGCGC ACCCCTC chr2L:7434942-7435062 41 3.60e-05 ACTGTATCTA CAACTGCC ATATAGTGTA chr2R:14487661-14487781 105 4.15e-05 CAGCTGCTTG CAGCGCGC GTGTCGGT chr2L:13258820-13258940 102 4.15e-05 TGATGAGATT CCACTGGC AACATTGCGT chr3R:27274689-27274809 95 4.37e-05 CCTACCTACA CAACGGCC TGGCAACTTT chr2L:4133139-4133259 13 5.49e-05 ACCGTAGCAA CAACTGGC GGCGAACGGC chr3L:776779-776899 86 5.49e-05 TATCCATCCT CACCTCCC CAACTCGAGG chrX:10233224-10233344 92 6.16e-05 ACTTTACAAG CACCGCCC TTTTTTATTT chr3L:5978527-5978647 70 6.82e-05 CAAATCACCG CCACCCCC AACCCATCGA chr3R:28045234-28045354 2 6.82e-05 T CAGCTGGC TTTCGTCTTC chr2R:18341016-18341136 8 6.82e-05 ATGTGCG CAGCTGGC GGTGAAAATG chr3L:3395493-3395613 77 7.79e-05 TCTCCCAGTG CACCTGCC TCTGTGTTGG chr2R:6586145-6586265 2 8.77e-05 a ccaccgcc accacGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9694039-9694159 2.1e-06 6_[+1]_106 chr3L:960694-960814 7.4e-06 30_[+1]_82 chr3L:882522-882642 7.4e-06 100_[+1]_12 chrX:8727875-8727995 7.4e-06 102_[+1]_10 chr3L:18331575-18331695 1.1e-05 [+1]_112 chr2R:14041294-14041414 1.1e-05 6_[+1]_106 chr3R:28677031-28677151 1.3e-05 95_[+1]_17 chr2L:19139015-19139135 1.3e-05 110_[+1]_2 chrX:8295599-8295719 2.1e-05 9_[+1]_103 chr3L:34805-34925 2.1e-05 69_[+1]_43 chr2R:14815986-14816106 2.2e-05 111_[+1]_1 chr3R:15672457-15672577 2.2e-05 71_[+1]_41 chr3L:764420-764540 2.8e-05 15_[+1]_97 chr2L:18891564-18891684 2.8e-05 105_[+1]_7 chr2L:7434942-7435062 3.6e-05 40_[+1]_72 chr2R:14487661-14487781 4.1e-05 104_[+1]_8 chr2L:13258820-13258940 4.1e-05 101_[+1]_11 chr3R:27274689-27274809 4.4e-05 94_[+1]_18 chr2L:4133139-4133259 5.5e-05 12_[+1]_100 chr3L:776779-776899 5.5e-05 85_[+1]_27 chrX:10233224-10233344 6.2e-05 91_[+1]_21 chr3L:5978527-5978647 6.8e-05 69_[+1]_43 chr3R:28045234-28045354 6.8e-05 1_[+1]_111 chr2R:18341016-18341136 6.8e-05 7_[+1]_105 chr3L:3395493-3395613 7.8e-05 76_[+1]_36 chr2R:6586145-6586265 8.8e-05 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMACTSSC width=8 seqs=26 chr2L:9694039-9694159 ( 7) CCACTCCC 1 chr3L:960694-960814 ( 31) CAACTCCC 1 chr3L:882522-882642 ( 101) CAACTCCC 1 chrX:8727875-8727995 ( 103) CCACGCCC 1 chr3L:18331575-18331695 ( 1) CCACTCGC 1 chr2R:14041294-14041414 ( 7) CCACTCGC 1 chr3R:28677031-28677151 ( 96) CAACGCCC 1 chr2L:19139015-19139135 ( 111) CAACGCCC 1 chrX:8295599-8295719 ( 10) CAACTCGC 1 chr3L:34805-34925 ( 70) CAGCTCCC 1 chr2R:14815986-14816106 ( 112) CCGCTCGC 1 chr3R:15672457-15672577 ( 72) CCGCTCGC 1 chr3L:764420-764540 ( 16) CCACTGCC 1 chr2L:18891564-18891684 ( 106) CAACGCGC 1 chr2L:7434942-7435062 ( 41) CAACTGCC 1 chr2R:14487661-14487781 ( 105) CAGCGCGC 1 chr2L:13258820-13258940 ( 102) CCACTGGC 1 chr3R:27274689-27274809 ( 95) CAACGGCC 1 chr2L:4133139-4133259 ( 13) CAACTGGC 1 chr3L:776779-776899 ( 86) CACCTCCC 1 chrX:10233224-10233344 ( 92) CACCGCCC 1 chr3L:5978527-5978647 ( 70) CCACCCCC 1 chr3R:28045234-28045354 ( 2) CAGCTGGC 1 chr2R:18341016-18341136 ( 8) CAGCTGGC 1 chr3L:3395493-3395613 ( 77) CACCTGCC 1 chr2R:6586145-6586265 ( 2) CCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.83953 E= 2.7e-002 -1134 261 -1134 -1134 89 123 -1134 -1134 98 -50 45 -1134 -1134 261 -1134 -1134 -1134 -109 67 97 -1134 200 103 -1134 -1134 182 132 -1134 -1134 261 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.7e-002 0.000000 1.000000 0.000000 0.000000 0.615385 0.384615 0.000000 0.000000 0.653846 0.115385 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.269231 0.653846 0.000000 0.653846 0.346154 0.000000 0.000000 0.576923 0.423077 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACTSSC MEME-1 regular expression -------------------------------------------------------------------------------- C[AC][AG]C[TG][CG][CG]C -------------------------------------------------------------------------------- Time 9.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGSGCC MEME-2 width = 8 sites = 15 llr = 152 E-value = 4.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::11: pos.-specific C a973417a probability G :::7682: matrix T :131:::: bits 2.6 * * 2.4 * * 2.1 * * 1.8 ** * Relative 1.6 *** **** Entropy 1.3 ******** (14.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCGGGCC consensus TCC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19728178-19728298 30 5.55e-07 GGGAATTGAA CCCGGGCC TCCCGGGTGA chr3L:22847698-22847818 47 5.55e-07 GGGAATTGAA CCCGGGCC TCCCGGGTGA chr3R:30934061-30934181 57 1.63e-06 CCCCTCCCCG CCCCGGCC ACTGCCAACG chr2L:11736107-11736227 87 4.42e-06 GATGATAAAA CCTGGGCC ATAAAAGATA chr3R:28045234-28045354 45 4.42e-06 CTCTAAAAAG CCCGCGGC AGCAGCTGTA chr3L:5877138-5877258 42 4.42e-06 ACTCGAGAAT CCCGCGGC GCAACGCATT chr3R:28573719-28573839 49 1.05e-05 GTTGTCAGTT CTCGGGCC AGAGGGCCAT chr3R:16255436-16255556 53 1.05e-05 AAAGGTCGTT CCTCGGCC GACGTACTAC chr3L:7962168-7962288 99 1.21e-05 AATTTAACTT CCCGCACC AATGGGTTAA chrX:8727063-8727183 43 1.53e-05 AGGGACTTGA CTCGCGCC GTCCCTGTCG chr3L:7955327-7955447 1 2.03e-05 . CCCTCGCC ATTAGAGATT chr2L:18891564-18891684 45 2.03e-05 ATAGCGTAAC CCCCGACC CCACCATAAC chrX:17810423-17810543 33 2.36e-05 CCCCTTGCGT CCTGCGGC TCCTTCGATT chr3L:776779-776899 32 3.13e-05 TGCCACGACA CCCCGGAC TAAATGGACA chr2L:18928027-18928147 40 3.63e-05 GACCTCAGCT CCTGGCCC ATCCAGTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19728178-19728298 5.6e-07 29_[+2]_83 chr3L:22847698-22847818 5.6e-07 46_[+2]_66 chr3R:30934061-30934181 1.6e-06 56_[+2]_56 chr2L:11736107-11736227 4.4e-06 86_[+2]_26 chr3R:28045234-28045354 4.4e-06 44_[+2]_68 chr3L:5877138-5877258 4.4e-06 41_[+2]_71 chr3R:28573719-28573839 1e-05 48_[+2]_64 chr3R:16255436-16255556 1e-05 52_[+2]_60 chr3L:7962168-7962288 1.2e-05 98_[+2]_14 chrX:8727063-8727183 1.5e-05 42_[+2]_70 chr3L:7955327-7955447 2e-05 [+2]_112 chr2L:18891564-18891684 2e-05 44_[+2]_68 chrX:17810423-17810543 2.4e-05 32_[+2]_80 chr3L:776779-776899 3.1e-05 31_[+2]_81 chr2L:18928027-18928147 3.6e-05 39_[+2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGSGCC width=8 seqs=15 chr2R:19728178-19728298 ( 30) CCCGGGCC 1 chr3L:22847698-22847818 ( 47) CCCGGGCC 1 chr3R:30934061-30934181 ( 57) CCCCGGCC 1 chr2L:11736107-11736227 ( 87) CCTGGGCC 1 chr3R:28045234-28045354 ( 45) CCCGCGGC 1 chr3L:5877138-5877258 ( 42) CCCGCGGC 1 chr3R:28573719-28573839 ( 49) CTCGGGCC 1 chr3R:16255436-16255556 ( 53) CCTCGGCC 1 chr3L:7962168-7962288 ( 99) CCCGCACC 1 chrX:8727063-8727183 ( 43) CTCGCGCC 1 chr3L:7955327-7955447 ( 1) CCCTCGCC 1 chr2L:18891564-18891684 ( 45) CCCCGACC 1 chrX:17810423-17810543 ( 33) CCTGCGGC 1 chr3L:776779-776899 ( 32) CCCCGGAC 1 chr2L:18928027-18928147 ( 40) CCTGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 4.1e+001 -1055 261 -1055 -1055 -1055 241 -1055 -133 -1055 217 -1055 -33 -1055 71 198 -232 -1055 129 182 -1055 -132 -129 224 -1055 -231 217 24 -1055 -1055 261 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.1e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.866667 0.000000 0.133333 0.000000 0.733333 0.000000 0.266667 0.000000 0.266667 0.666667 0.066667 0.000000 0.400000 0.600000 0.000000 0.133333 0.066667 0.800000 0.000000 0.066667 0.733333 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSGCC MEME-2 regular expression -------------------------------------------------------------------------------- CC[CT][GC][GC]G[CG]C -------------------------------------------------------------------------------- Time 16.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGCSCC MEME-3 width = 8 sites = 8 llr = 89 E-value = 4.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 31:396aa probability G 89:814:: matrix T ::a::::: bits 2.6 ** 2.4 ** 2.1 * * ** 1.8 ** ** ** Relative 1.6 ******** Entropy 1.3 ******** (16.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGTGCCCC consensus C C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30759128-30759248 7 2.32e-06 GGTGGT GGTGCGCC AGGTAAATCC chr3L:9424598-9424718 21 2.32e-06 AAAAATACAG GGTGCGCC CTTATGCTAA chrX:3024674-3024794 49 4.53e-06 CACTTTGCTT GGTCCCCC Cttgtgtttt chr2L:19139015-19139135 1 4.53e-06 . GGTCCCCC TCACACGCAC chr3L:13476212-13476332 33 4.53e-06 TTATACCAAT CGTGCCCC AGCAAAAATA chr3L:34805-34925 55 6.81e-06 ACTTGAATGG CGTGCGCC ACAATGGCAG chr2L:17587409-17587529 30 7.91e-06 TACGGTGACT GCTGCCCC GAACATCTGA chr2L:4349568-4349688 3 9.09e-06 AT GGTGGCCC AGATGGTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30759128-30759248 2.3e-06 6_[+3]_106 chr3L:9424598-9424718 2.3e-06 20_[+3]_92 chrX:3024674-3024794 4.5e-06 48_[+3]_64 chr2L:19139015-19139135 4.5e-06 [+3]_112 chr3L:13476212-13476332 4.5e-06 32_[+3]_80 chr3L:34805-34925 6.8e-06 54_[+3]_58 chr2L:17587409-17587529 7.9e-06 29_[+3]_83 chr2L:4349568-4349688 9.1e-06 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGCSCC width=8 seqs=8 chr3R:30759128-30759248 ( 7) GGTGCGCC 1 chr3L:9424598-9424718 ( 21) GGTGCGCC 1 chrX:3024674-3024794 ( 49) GGTCCCCC 1 chr2L:19139015-19139135 ( 1) GGTCCCCC 1 chr3L:13476212-13476332 ( 33) CGTGCCCC 1 chr3L:34805-34925 ( 55) CGTGCGCC 1 chr2L:17587409-17587529 ( 30) GCTGCCCC 1 chr2L:4349568-4349688 ( 3) GGTGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 4.5e+002 -965 61 215 -965 -965 -39 237 -965 -965 -965 -965 158 -965 61 215 -965 -965 242 -44 -965 -965 193 115 -965 -965 261 -965 -965 -965 261 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.5e+002 0.000000 0.250000 0.750000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGCSCC MEME-3 regular expression -------------------------------------------------------------------------------- [GC]GT[GC]C[CG]CC -------------------------------------------------------------------------------- Time 22.28 secs. ******************************************************************************** ******************************************************************************** MOTIF STGBYGCA MEME-4 width = 8 sites = 20 llr = 189 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::a pos.-specific C 51:47:a: probability G 6:a4:a:1 matrix T :8:24::: bits 2.6 * ** 2.4 * ** 2.1 * ** 1.8 * ** Relative 1.6 * * ** Entropy 1.3 * * **** (13.6 bits) 1.0 * * **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCCGCA consensus C GT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6171602-6171722 91 4.75e-06 ACATGGTCCT GTGGCGCA ATGGATAACG chr2R:19725807-19725927 104 4.75e-06 TATAAGCAGA GTGGCGCA GTGGAAGCG chr2R:23573770-23573890 109 4.75e-06 CACAAGAAGT GTGGCGCA ATAA chr2L:14405202-14405322 69 9.33e-06 TATTAATGAT CTGCCGCA GATATCGATC chr3R:7972286-7972406 80 1.91e-05 TGAAGGGTTG GTGCTGCA CTTGATGACT chr2L:6247564-6247684 104 1.91e-05 TAAGGGATGA GTGCTGCA TATGTGGCC chr2R:8798378-8798498 26 3.33e-05 CAGTGGCCTC CTGCTGCA CGATGCCGAT chr3L:14194220-14194340 97 3.33e-05 CTTTAAACAG GTGTCGCA TTTTATGACA chr2L:14011774-14011894 98 3.33e-05 ATAAATTGAG CTGCTGCA GAATTATAAA chr2R:14788096-14788216 83 3.33e-05 GTTCGACAAT CTGCTGCA ATTTCCGCAG chr3R:16630146-16630266 98 3.33e-05 CCAAGAGAAA GTGTCGCA AACAATATCA chr3L:3976587-3976707 65 3.33e-05 AAAACGCCAG CTGCTGCA AATGGCACGC chr2L:19095917-19096037 19 3.33e-05 GCTGGCGTGT CTGGTGCA GTTTTGTCAC chr3L:17364334-17364454 43 3.79e-05 GGAAGCCAAT CTGTCGCA TTTGTGTGCA chrX:8727063-8727183 55 3.79e-05 CGCGCCGTCC CTGTCGCA CCCAGTCGTC chr3L:14672487-14672607 89 4.26e-05 TTATGACTTT GAGGCGCA TATATTCAGA chr2L:11420295-11420415 88 4.26e-05 AGCAGGATGC GAGGCGCA TCCTTTTGTC chr2L:4349568-4349688 92 4.72e-05 TCAATTTGCG CAGGCGCA TCGTCCCGAA chr2L:19139015-19139135 101 4.95e-05 TGGAATGGAT GCGGCGCA TTCAACGCCC chr3L:5882090-5882210 89 5.41e-05 GATGGGCCAA GTGCCGCG AGTGCGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6171602-6171722 4.7e-06 90_[+4]_22 chr2R:19725807-19725927 4.7e-06 103_[+4]_9 chr2R:23573770-23573890 4.7e-06 108_[+4]_4 chr2L:14405202-14405322 9.3e-06 68_[+4]_44 chr3R:7972286-7972406 1.9e-05 79_[+4]_33 chr2L:6247564-6247684 1.9e-05 103_[+4]_9 chr2R:8798378-8798498 3.3e-05 25_[+4]_87 chr3L:14194220-14194340 3.3e-05 96_[+4]_16 chr2L:14011774-14011894 3.3e-05 97_[+4]_15 chr2R:14788096-14788216 3.3e-05 82_[+4]_30 chr3R:16630146-16630266 3.3e-05 97_[+4]_15 chr3L:3976587-3976707 3.3e-05 64_[+4]_48 chr2L:19095917-19096037 3.3e-05 18_[+4]_94 chr3L:17364334-17364454 3.8e-05 42_[+4]_70 chrX:8727063-8727183 3.8e-05 54_[+4]_58 chr3L:14672487-14672607 4.3e-05 88_[+4]_24 chr2L:11420295-11420415 4.3e-05 87_[+4]_25 chr2L:4349568-4349688 4.7e-05 91_[+4]_21 chr2L:19139015-19139135 5e-05 100_[+4]_12 chr3L:5882090-5882210 5.4e-05 88_[+4]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGBYGCA width=8 seqs=20 chr2R:6171602-6171722 ( 91) GTGGCGCA 1 chr2R:19725807-19725927 ( 104) GTGGCGCA 1 chr2R:23573770-23573890 ( 109) GTGGCGCA 1 chr2L:14405202-14405322 ( 69) CTGCCGCA 1 chr3R:7972286-7972406 ( 80) GTGCTGCA 1 chr2L:6247564-6247684 ( 104) GTGCTGCA 1 chr2R:8798378-8798498 ( 26) CTGCTGCA 1 chr3L:14194220-14194340 ( 97) GTGTCGCA 1 chr2L:14011774-14011894 ( 98) CTGCTGCA 1 chr2R:14788096-14788216 ( 83) CTGCTGCA 1 chr3R:16630146-16630266 ( 98) GTGTCGCA 1 chr3L:3976587-3976707 ( 65) CTGCTGCA 1 chr2L:19095917-19096037 ( 19) CTGGTGCA 1 chr3L:17364334-17364454 ( 43) CTGTCGCA 1 chrX:8727063-8727183 ( 55) CTGTCGCA 1 chr3L:14672487-14672607 ( 89) GAGGCGCA 1 chr2L:11420295-11420415 ( 88) GAGGCGCA 1 chr2L:4349568-4349688 ( 92) CAGGCGCA 1 chr2L:19139015-19139135 ( 101) GCGGCGCA 1 chr3L:5882090-5882210 ( 89) GTGCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 2.7e+003 -1097 146 170 -1097 -115 -171 -1097 126 -1097 -1097 256 -1097 -1097 129 124 -74 -1097 199 -1097 6 -1097 -1097 256 -1097 -1097 261 -1097 -1097 151 -1097 -176 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.7e+003 0.000000 0.450000 0.550000 0.000000 0.150000 0.050000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.400000 0.200000 0.000000 0.650000 0.000000 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGBYGCA MEME-4 regular expression -------------------------------------------------------------------------------- [GC]TG[CGT][CT]GCA -------------------------------------------------------------------------------- Time 28.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCAGSG MEME-5 width = 8 sites = 15 llr = 152 E-value = 9.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1::9::: pos.-specific C 31:9:131 probability G 78a:1979 matrix T :1:1:::: bits 2.6 * 2.4 * 2.1 * * * 1.8 * ** * * Relative 1.6 * ** *** Entropy 1.3 ******** (14.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCAGGG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18341016-18341136 37 1.26e-06 GAAAGCCACA GGGCAGGG GGAAAAGCAA chr3R:28573719-28573839 71 2.48e-06 GGCCATAAAG GGGCAGCG ACAATTGTTT chr3R:17582985-17583105 104 3.70e-06 GACTGCTGCT CGGCAGGG ATGCGATGT chr3L:3976587-3976707 20 4.88e-06 acaacaacat cggcagcg tcccatcagc chr2R:14041294-14041414 103 4.88e-06 AGTGAGTCCT CGGCAGCG AGCGAGTGTC chr3L:764420-764540 6 7.32e-06 ACAAT GGGCACGG CCCCACTGCC chr2R:23573770-23573890 71 7.32e-06 GCGATAAGCA GGGCAGGC CAGGAGCATA chr3L:782847-782967 99 7.32e-06 ATCATCAAGG GGGCAGGC CAAAATGCTG chr3R:30759128-30759248 53 9.18e-06 GGACGAGGGT GCGCAGGG GGAACACCGA chr2L:868442-868562 27 1.15e-05 CTACACTAGC GGGCACCG CAATAGAATC chr2L:21324665-21324785 111 1.41e-05 AGATGTCGGG GGGTAGGG CA chr3R:5103668-5103788 67 1.77e-05 TACAGCAAAA CGGCGGGG TCATGAAGCT chr2L:3681469-3681589 25 2.39e-05 GGGTGGTGGT GTGCAGGG TGTTGGCTGC chr2L:18925518-18925638 55 2.39e-05 CAGTGGGCGA GAGCAGGG ACATCGTTAT chr2L:19098163-19098283 89 2.64e-05 AAAGGAGTCC GGGTAGCG AGACAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18341016-18341136 1.3e-06 36_[+5]_76 chr3R:28573719-28573839 2.5e-06 70_[+5]_42 chr3R:17582985-17583105 3.7e-06 103_[+5]_9 chr3L:3976587-3976707 4.9e-06 19_[+5]_93 chr2R:14041294-14041414 4.9e-06 102_[+5]_10 chr3L:764420-764540 7.3e-06 5_[+5]_107 chr2R:23573770-23573890 7.3e-06 70_[+5]_42 chr3L:782847-782967 7.3e-06 98_[+5]_14 chr3R:30759128-30759248 9.2e-06 52_[+5]_60 chr2L:868442-868562 1.2e-05 26_[+5]_86 chr2L:21324665-21324785 1.4e-05 110_[+5]_2 chr3R:5103668-5103788 1.8e-05 66_[+5]_46 chr2L:3681469-3681589 2.4e-05 24_[+5]_88 chr2L:18925518-18925638 2.4e-05 54_[+5]_58 chr2L:19098163-19098283 2.6e-05 88_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCAGSG width=8 seqs=15 chr2R:18341016-18341136 ( 37) GGGCAGGG 1 chr3R:28573719-28573839 ( 71) GGGCAGCG 1 chr3R:17582985-17583105 ( 104) CGGCAGGG 1 chr3L:3976587-3976707 ( 20) CGGCAGCG 1 chr2R:14041294-14041414 ( 103) CGGCAGCG 1 chr3L:764420-764540 ( 6) GGGCACGG 1 chr2R:23573770-23573890 ( 71) GGGCAGGC 1 chr3L:782847-782967 ( 99) GGGCAGGC 1 chr3R:30759128-30759248 ( 53) GCGCAGGG 1 chr2L:868442-868562 ( 27) GGGCACCG 1 chr2L:21324665-21324785 ( 111) GGGTAGGG 1 chr3R:5103668-5103788 ( 67) CGGCGGGG 1 chr2L:3681469-3681589 ( 25) GTGCAGGG 1 chr2L:18925518-18925638 ( 55) GAGCAGGG 1 chr2L:19098163-19098283 ( 89) GGGTAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 9.4e+000 -1055 71 211 -1055 -231 -129 224 -232 -1055 -1055 256 -1055 -1055 241 -1055 -133 149 -1055 -134 -1055 -1055 -29 235 -1055 -1055 103 198 -1055 -1055 -29 235 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 9.4e+000 0.000000 0.266667 0.733333 0.000000 0.066667 0.066667 0.800000 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.000000 0.133333 0.933333 0.000000 0.066667 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.133333 0.866667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCAGSG MEME-5 regular expression -------------------------------------------------------------------------------- [GC]GGCAG[GC]G -------------------------------------------------------------------------------- Time 34.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:793005-793125 5.46e-01 120 chr2L:18925518-18925638 2.78e-02 54_[+5(2.39e-05)]_58 chr3L:7945345-7945465 6.87e-01 120 chrX:17810423-17810543 7.59e-04 32_[+2(2.36e-05)]_80 chr3L:782847-782967 8.21e-03 98_[+5(7.32e-06)]_14 chr3L:13210183-13210303 1.61e-01 120 chr2L:4349568-4349688 1.45e-05 2_[+3(9.09e-06)]_81_[+4(4.72e-05)]_\ 21 chr2L:17587409-17587529 1.57e-05 29_[+3(7.91e-06)]_83 chr2L:19095917-19096037 1.00e-02 18_[+4(3.33e-05)]_94 chr2R:14041294-14041414 3.17e-07 6_[+1(1.07e-05)]_62_[+2(9.38e-05)]_\ 18_[+5(4.88e-06)]_10 chr3R:15672457-15672577 1.01e-04 71_[+1(2.21e-05)]_41 chr3L:5882090-5882210 1.58e-04 88_[+4(5.41e-05)]_24 chr3L:5970952-5971072 2.98e-03 27_[+3(8.45e-05)]_85 chr3R:16255436-16255556 1.96e-05 52_[+2(1.05e-05)]_60 chr2R:6586145-6586265 8.31e-04 1_[+1(8.77e-05)]_111 chr2R:18341016-18341136 9.89e-05 7_[+1(6.82e-05)]_21_[+5(1.26e-06)]_\ 76 chr2L:18891564-18891684 2.24e-05 44_[+2(2.03e-05)]_53_[+1(2.76e-05)]_\ 7 chr2R:12544383-12544503 3.48e-02 120 chrX:8727063-8727183 3.36e-04 42_[+2(1.53e-05)]_4_[+4(3.79e-05)]_\ 58 chr3R:17582985-17583105 6.46e-05 103_[+5(3.70e-06)]_9 chr3L:1868972-1869092 8.44e-01 120 chr2R:16368837-16368957 4.20e-04 105_[+5(6.13e-05)]_7 chr2L:14457623-14457743 9.92e-01 120 chr3R:18804665-18804785 1.00e+00 120 chr3L:3976587-3976707 9.11e-05 19_[+5(4.88e-06)]_37_[+4(3.33e-05)]_\ 48 chr3L:5877138-5877258 1.85e-05 41_[+2(4.42e-06)]_71 chr2L:18928027-18928147 4.22e-05 39_[+3(3.15e-05)]_73 chr2L:3681469-3681589 1.70e-04 24_[+5(2.39e-05)]_88 chr2R:14432619-14432739 8.30e-01 120 chr3L:4534089-4534209 7.13e-01 120 chr2L:21324665-21324785 7.30e-04 110_[+5(1.41e-05)]_2 chr2L:11474724-11474844 4.02e-01 120 chr3L:12050754-12050874 7.99e-01 120 chr3L:15494336-15494456 1.00e+00 120 chr2R:14815986-14816106 3.28e-03 111_[+1(2.21e-05)]_1 chr2R:11232615-11232735 1.00e+00 120 chrX:10233224-10233344 8.35e-03 91_[+1(6.16e-05)]_21 chr3R:8619202-8619322 9.98e-01 120 chr2L:16716876-16716996 8.48e-01 120 chr3L:15044070-15044190 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4.98e-01 120 chr2L:14405202-14405322 2.11e-02 68_[+4(9.33e-06)]_44 chr3R:12406363-12406483 1.00e+00 120 chr3L:1083434-1083554 1.00e+00 120 chr3L:12058579-12058699 9.81e-01 120 chr3L:19924779-19924899 4.37e-02 120 chr3L:9566987-9567107 1.00e+00 120 chr2R:20195235-20195355 9.82e-01 120 chr3R:14077193-14077313 8.98e-01 120 chr2R:22529758-22529878 7.48e-03 120 chr3R:19014967-19015087 9.93e-01 120 chr2L:9614143-9614263 9.76e-01 120 chr3R:13893001-13893121 9.70e-01 120 chr2R:16581749-16581869 7.11e-01 120 chr3R:23181132-23181252 9.77e-01 120 chrX:13226572-13226692 6.78e-01 120 chr2L:18966995-18967115 9.99e-01 120 chr2L:7434942-7435062 8.79e-03 40_[+1(3.60e-05)]_57_[+1(8.22e-05)]_\ 7 chr3L:11107569-11107689 7.51e-01 120 chr2L:19134980-19135100 2.01e-02 120 chr3R:26105996-26106116 9.99e-01 120 chrX:3019750-3019870 2.98e-01 120 chr3L:15275564-15275684 9.47e-01 120 chr3R:6368713-6368833 1.10e-02 120 chrX:10573654-10573774 8.83e-01 120 chr3L:14411069-14411189 6.42e-02 120 chr3R:26235156-26235276 8.94e-01 120 chr3R:10354057-10354177 5.45e-01 120 chr2L:1916593-1916713 5.30e-01 120 chr3R:28677031-28677151 5.16e-02 95_[+1(1.28e-05)]_17 chr2R:8798378-8798498 7.15e-04 25_[+4(3.33e-05)]_87 chr3L:11351520-11351640 8.37e-01 120 chrX:14679330-14679450 1.41e-01 120 chr3L:1151805-1151925 3.11e-01 120 chr3L:18102192-18102312 6.62e-01 120 chr3R:20555179-20555299 4.67e-01 120 chr3R:16476603-16476723 8.81e-01 120 chr3L:20517030-20517150 3.63e-01 120 chr3R:26333448-26333568 9.40e-01 120 chrX:9135209-9135329 9.97e-01 120 chrX:6615597-6615717 6.77e-01 120 chr3R:15983707-15983827 1.24e-01 85_[+2(8.25e-05)]_27 chr3R:11852041-11852161 1.00e+00 120 chr2L:14141370-14141490 8.19e-01 120 chrX:3397018-3397138 5.09e-01 120 chr2L:11736107-11736227 6.82e-05 86_[+2(4.42e-06)]_26 chr2R:14161303-14161423 9.91e-01 120 chr2L:868442-868562 4.50e-03 26_[+5(1.15e-05)]_86 chr3L:16873234-16873354 9.98e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************