******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sv.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:14212570-14212690 1.0000 120 chr3L:11253052-11253172 1.0000 120 chr3L:16129008-16129128 1.0000 120 chr2R:11529569-11529689 1.0000 120 chr3L:11253251-11253371 1.0000 120 chr3R:10641418-10641538 1.0000 120 chrX:20511568-20511688 1.0000 120 chr2L:11199184-11199304 1.0000 120 chr3L:12803948-12804068 1.0000 120 chr3L:17427183-17427303 1.0000 120 chr3R:14351561-14351681 1.0000 120 chr3R:21856537-21856657 1.0000 120 chr2L:21310487-21310607 1.0000 120 chrX:7702999-7703119 1.0000 120 chr3L:1568773-1568893 1.0000 120 chr2R:8065488-8065608 1.0000 120 chr3R:20833844-20833964 1.0000 120 chr2R:18834760-18834880 1.0000 120 chr3R:22367313-22367433 1.0000 120 chr2L:20675994-20676114 1.0000 120 chr3L:19618515-19618635 1.0000 120 chrX:4918765-4918885 1.0000 120 chr3R:27274608-27274728 1.0000 120 chr3L:8748991-8749111 1.0000 120 chr3R:14370294-14370414 1.0000 120 chr3L:11336514-11336634 1.0000 120 chr2R:12173478-12173598 1.0000 120 chr3L:18748434-18748554 1.0000 120 chr3L:14002065-14002185 1.0000 120 chr2R:17420058-17420178 1.0000 120 chr3R:5861697-5861817 1.0000 120 chr2R:10583353-10583473 1.0000 120 chr2R:22661310-22661430 1.0000 120 chr2L:8082987-8083107 1.0000 120 chr3R:28676985-28677105 1.0000 120 chr2L:19141011-19141131 1.0000 120 chr3L:19905609-19905729 1.0000 120 chr3L:1151775-1151895 1.0000 120 chr2L:18150825-18150945 1.0000 120 chr2L:13367493-13367613 1.0000 120 chr2L:11091317-11091437 1.0000 120 chr2L:2182070-2182190 1.0000 120 chr3L:9371002-9371122 1.0000 120 chrX:10362922-10363042 1.0000 120 chr2R:16951933-16952053 1.0000 120 chr2R:22402856-22402976 1.0000 120 chr2L:17204027-17204147 1.0000 120 chr3R:13446505-13446625 1.0000 120 chrX:15591802-15591922 1.0000 120 chr3L:1569022-1569142 1.0000 120 chr2R:22649943-22650063 1.0000 120 chr3R:24026296-24026416 1.0000 120 chr2L:10221138-10221258 1.0000 120 chr3R:21188164-21188284 1.0000 120 chr2L:3012934-3013054 1.0000 120 chr2L:18677205-18677325 1.0000 120 chr2L:2873486-2873606 1.0000 120 chr2L:4133195-4133315 1.0000 120 chr3L:20186416-20186536 1.0000 120 chr3L:10516303-10516423 1.0000 120 chr2L:10431248-10431368 1.0000 120 chrX:618693-618813 1.0000 120 chrX:13404005-13404125 1.0000 120 chr2L:10488624-10488744 1.0000 120 chr2R:21706429-21706549 1.0000 120 chr3R:18918609-18918729 1.0000 120 chr2L:7443107-7443227 1.0000 120 chr3L:630183-630303 1.0000 120 chr3L:19897089-19897209 1.0000 120 chrX:5086000-5086120 1.0000 120 chr2R:10854304-10854424 1.0000 120 chr3L:6981977-6982097 1.0000 120 chr2R:18774882-18775002 1.0000 120 chr3R:23763216-23763336 1.0000 120 chr3L:19294455-19294575 1.0000 120 chr3R:16704405-16704525 1.0000 120 chr3R:23067454-23067574 1.0000 120 chr4:69243-69363 1.0000 120 chrX:16103553-16103673 1.0000 120 chr2L:1628277-1628397 1.0000 120 chrX:10086367-10086487 1.0000 120 chr2R:17478602-17478722 1.0000 120 chrX:6352322-6352442 1.0000 120 chr2L:7702527-7702647 1.0000 120 chrX:6695017-6695137 1.0000 120 chrX:19865684-19865804 1.0000 120 chr3R:25661343-25661463 1.0000 120 chrX:13253228-13253348 1.0000 120 chr3R:21118933-21119053 1.0000 120 chrX:7901724-7901844 1.0000 120 chr3R:21657230-21657350 1.0000 120 chrX:20159967-20160087 1.0000 120 chr2R:21091980-21092100 1.0000 120 chr3R:15792605-15792725 1.0000 120 chr2L:6907819-6907939 1.0000 120 chr2L:1158313-1158433 1.0000 120 chr2R:22686676-22686796 1.0000 120 chr3R:25888718-25888838 1.0000 120 chr3R:24318481-24318601 1.0000 120 chr3R:25490493-25490613 1.0000 120 chr3L:6495547-6495667 1.0000 120 chr3R:29690553-29690673 1.0000 120 chr3L:20785282-20785402 1.0000 120 chr3R:16625233-16625353 1.0000 120 chr3L:3983514-3983634 1.0000 120 chr3R:7821720-7821840 1.0000 120 chrX:6800988-6801108 1.0000 120 chr2L:16526571-16526691 1.0000 120 chr3R:15139377-15139497 1.0000 120 chr3R:23293520-23293640 1.0000 120 chr3R:23820277-23820397 1.0000 120 chr2R:17698936-17699056 1.0000 120 chr3R:10265555-10265675 1.0000 120 chrX:18899941-18900061 1.0000 120 chr2L:21149240-21149360 1.0000 120 chr3L:94171-94291 1.0000 120 chr2R:11652446-11652566 1.0000 120 chr3L:16131981-16132101 1.0000 120 chr3R:12630420-12630540 1.0000 120 chr2R:14854998-14855118 1.0000 120 chr2L:8602783-8602903 1.0000 120 chr3L:13922349-13922469 1.0000 120 chrX:3538874-3538994 1.0000 120 chr2R:10899197-10899317 1.0000 120 chr2L:203679-203799 1.0000 120 chr3L:6189643-6189763 1.0000 120 chr2R:20312545-20312665 1.0000 120 chr3R:18399558-18399678 1.0000 120 chrX:16650499-16650619 1.0000 120 chr3R:25888512-25888632 1.0000 120 chr3L:9899173-9899293 1.0000 120 chr3R:23300742-23300862 1.0000 120 chr3R:17043350-17043470 1.0000 120 chrX:7015089-7015209 1.0000 120 chr2L:13445587-13445707 1.0000 120 chr3L:22277361-22277481 1.0000 120 chr2L:4224203-4224323 1.0000 120 chr2R:24657158-24657278 1.0000 120 chrX:17176715-17176835 1.0000 120 chr3L:11534154-11534274 1.0000 120 chr2R:12173707-12173827 1.0000 120 chr3R:21187142-21187262 1.0000 120 chr3R:10882253-10882373 1.0000 120 chr3R:14875689-14875809 1.0000 120 chr2R:23176808-23176928 1.0000 120 chr2L:5326749-5326869 1.0000 120 chr3L:16129349-16129469 1.0000 120 chr3R:11628562-11628682 1.0000 120 chr3L:12501318-12501438 1.0000 120 chr3L:10516099-10516219 1.0000 120 chr3L:20771138-20771258 1.0000 120 chr3R:25039280-25039400 1.0000 120 chr2R:21323609-21323729 1.0000 120 chrX:20507833-20507953 1.0000 120 chr2R:21057379-21057499 1.0000 120 chr3L:27267169-27267289 1.0000 120 chrX:14169170-14169290 1.0000 120 chr3L:264372-264492 1.0000 120 chr2R:11204349-11204469 1.0000 120 chrX:12454519-12454639 1.0000 120 chr2R:16170828-16170948 1.0000 120 chr3R:5636847-5636967 1.0000 120 chr3R:18242133-18242253 1.0000 120 chrX:16278073-16278193 1.0000 120 chr2R:11809477-11809597 1.0000 120 chr2L:7270404-7270524 1.0000 120 chr2R:18528458-18528578 1.0000 120 chrX:12463077-12463197 1.0000 120 chr3L:8289962-8290082 1.0000 120 chr3R:5856418-5856538 1.0000 120 chr2L:4847380-4847500 1.0000 120 chr3R:11244003-11244123 1.0000 120 chr2R:24265263-24265383 1.0000 120 chr3R:27557130-27557250 1.0000 120 chr2R:18829745-18829865 1.0000 120 chrX:9356491-9356611 1.0000 120 chrX:1370203-1370323 1.0000 120 chrX:17713491-17713611 1.0000 120 chrX:2149668-2149788 1.0000 120 chr3L:22065809-22065929 1.0000 120 chr3R:18274526-18274646 1.0000 120 chr3R:31793694-31793814 1.0000 120 chr2L:19377544-19377664 1.0000 120 chr3R:13030741-13030861 1.0000 120 chr2R:18326581-18326701 1.0000 120 chr3L:15967888-15968008 1.0000 120 chr2R:17590777-17590897 1.0000 120 chr2R:14362930-14363050 1.0000 120 chr3L:554724-554844 1.0000 120 chr2L:8381770-8381890 1.0000 120 chr3R:9677855-9677975 1.0000 120 chrX:5901882-5902002 1.0000 120 chr2R:9693627-9693747 1.0000 120 chr3R:12369291-12369411 1.0000 120 chr3L:9435503-9435623 1.0000 120 chr2L:7494454-7494574 1.0000 120 chrX:11108257-11108377 1.0000 120 chr2R:15201325-15201445 1.0000 120 chr2R:14981190-14981310 1.0000 120 chr3R:20588562-20588682 1.0000 120 chrX:13757016-13757136 1.0000 120 chr3R:9237074-9237194 1.0000 120 chr2R:11640951-11641071 1.0000 120 chr3L:12526940-12527060 1.0000 120 chr2L:6797526-6797646 1.0000 120 chr3L:9402294-9402414 1.0000 120 chrX:13384913-13385033 1.0000 120 chr2L:7957231-7957351 1.0000 120 chr4:406939-407059 1.0000 120 chrX:9152437-9152557 1.0000 120 chr2R:13198334-13198454 1.0000 120 chr2R:16135475-16135595 1.0000 120 chr2R:16229963-16230083 1.0000 120 chr2R:7699188-7699308 1.0000 120 chr2R:11095288-11095408 1.0000 120 chr3R:21499643-21499763 1.0000 120 chr2L:10856613-10856733 1.0000 120 chrX:7703226-7703346 1.0000 120 chr2L:5196865-5196985 1.0000 120 chr2R:8914053-8914173 1.0000 120 chr3R:29869227-29869347 1.0000 120 chr2L:15751147-15751267 1.0000 120 chr3R:27677252-27677372 1.0000 120 chr3L:4626128-4626248 1.0000 120 chr2R:24943244-24943364 1.0000 120 chr3R:21633468-21633588 1.0000 120 chr3R:10696563-10696683 1.0000 120 chr3L:15094815-15094935 1.0000 120 chr2L:11417671-11417791 1.0000 120 chr2L:14021558-14021678 1.0000 120 chr2R:19492040-19492160 1.0000 120 chr2L:73198-73318 1.0000 120 chr2L:1462281-1462401 1.0000 120 chr2R:21507933-21508053 1.0000 120 chr3R:17151779-17151899 1.0000 120 chr2L:1629706-1629826 1.0000 120 chr2L:20093977-20094097 1.0000 120 chr3R:27987410-27987530 1.0000 120 chr2R:7012047-7012167 1.0000 120 chr3L:2372072-2372192 1.0000 120 chr3R:5613252-5613372 1.0000 120 chr2L:15248795-15248915 1.0000 120 chr2R:16800161-16800281 1.0000 120 chr2L:14701629-14701749 1.0000 120 chr3L:4186849-4186969 1.0000 120 chr2L:3813434-3813554 1.0000 120 chr2R:17461191-17461311 1.0000 120 chr2R:11275775-11275895 1.0000 120 chr3L:19637019-19637139 1.0000 120 chr3L:9066191-9066311 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sv/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sv.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.327 C 0.178 G 0.178 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.327 C 0.178 G 0.178 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGTGCTG MEME-1 width = 8 sites = 19 llr = 194 E-value = 2.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9::::1: pos.-specific C a11::9:1 probability G ::92a::9 matrix T :::8:19: bits 2.5 * * 2.2 * * * 2.0 * * ** * 1.7 * * ** * Relative 1.5 * * ** * Entropy 1.2 *** **** (14.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGCTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:17151779-17151899 78 5.83e-06 AGCTGTTGCG CAGTGCTG GAAAGTGCCG chr2R:13198334-13198454 60 5.83e-06 CGAATTCCGA CAGTGCTG TTAAACTACA chr2R:24265263-24265383 48 5.83e-06 tcaaatttaC CAGTGCTG GAAAGCACAT chr2R:16170828-16170948 13 5.83e-06 ATCTGCCTAA CAGTGCTG TAAAATGTGT chr3R:25039280-25039400 47 5.83e-06 TGCGCCAAAC CAGTGCTG CCAAAATTCT chr2L:4224203-4224323 57 5.83e-06 GCTCCATTTT CAGTGCTG TAAATTGCCA chr3L:16131981-16132101 34 5.83e-06 CCTGGCCGAT CAGTGCTG GAAATAGTTA chr2R:8914053-8914173 63 9.12e-06 GCTCGGTGTT CAGGGCTG TCAGGTGTCA chr3L:15967888-15968008 31 9.12e-06 AAATCGATAT CAGGGCTG CCATTTGTAG chr2L:5326749-5326869 24 9.12e-06 TTGTGGTTAC CAGGGCTG CGAAGTAGCC chr3L:9899173-9899293 18 9.12e-06 AACTGTTGAC CAGGGCTG GAAACGGCAA chr2L:2182070-2182190 43 1.50e-05 AAAACAGAAA CACTGCTG AAGAAAGCTA chr3R:20833844-20833964 90 1.50e-05 ATACGATGTA CACTGCTG CTCTTAGGTT chr2R:24657158-24657278 111 2.10e-05 CTCTTTTTCT CAGTGCAG CT chr2L:8602783-8602903 102 2.10e-05 TTATTTCTCT CAGTGCAG AGGGTGGCTT chr3L:27267169-27267289 108 2.42e-05 TGGAATATTT CCGTGCTG TAAGT chrX:12463077-12463197 82 3.45e-05 ATGGGCTAAG CAGTGTTG TTCAAGATAT chr3L:19897089-19897209 76 3.45e-05 CTTGCCACAG CAGTGTTG GTAAATGCGT chr2L:3813434-3813554 40 4.36e-05 GCAAGGAGAG CAGTGCTC AAAAGCAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17151779-17151899 5.8e-06 77_[+1]_35 chr2R:13198334-13198454 5.8e-06 59_[+1]_53 chr2R:24265263-24265383 5.8e-06 47_[+1]_65 chr2R:16170828-16170948 5.8e-06 12_[+1]_100 chr3R:25039280-25039400 5.8e-06 46_[+1]_66 chr2L:4224203-4224323 5.8e-06 56_[+1]_56 chr3L:16131981-16132101 5.8e-06 33_[+1]_79 chr2R:8914053-8914173 9.1e-06 62_[+1]_50 chr3L:15967888-15968008 9.1e-06 30_[+1]_82 chr2L:5326749-5326869 9.1e-06 23_[+1]_89 chr3L:9899173-9899293 9.1e-06 17_[+1]_95 chr2L:2182070-2182190 1.5e-05 42_[+1]_70 chr3R:20833844-20833964 1.5e-05 89_[+1]_23 chr2R:24657158-24657278 2.1e-05 110_[+1]_2 chr2L:8602783-8602903 2.1e-05 101_[+1]_11 chr3L:27267169-27267289 2.4e-05 107_[+1]_5 chrX:12463077-12463197 3.5e-05 81_[+1]_31 chr3L:19897089-19897209 3.5e-05 75_[+1]_37 chr2L:3813434-3813554 4.4e-05 39_[+1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGCTG width=8 seqs=19 chr3R:17151779-17151899 ( 78) CAGTGCTG 1 chr2R:13198334-13198454 ( 60) CAGTGCTG 1 chr2R:24265263-24265383 ( 48) CAGTGCTG 1 chr2R:16170828-16170948 ( 13) CAGTGCTG 1 chr3R:25039280-25039400 ( 47) CAGTGCTG 1 chr2L:4224203-4224323 ( 57) CAGTGCTG 1 chr3L:16131981-16132101 ( 34) CAGTGCTG 1 chr2R:8914053-8914173 ( 63) CAGGGCTG 1 chr3L:15967888-15968008 ( 31) CAGGGCTG 1 chr2L:5326749-5326869 ( 24) CAGGGCTG 1 chr3L:9899173-9899293 ( 18) CAGGGCTG 1 chr2L:2182070-2182190 ( 43) CACTGCTG 1 chr3R:20833844-20833964 ( 90) CACTGCTG 1 chr2R:24657158-24657278 ( 111) CAGTGCAG 1 chr2L:8602783-8602903 ( 102) CAGTGCAG 1 chr3L:27267169-27267289 ( 108) CCGTGCTG 1 chrX:12463077-12463197 ( 82) CAGTGTTG 1 chr3L:19897089-19897209 ( 76) CAGTGTTG 1 chr2L:3813434-3813554 ( 40) CAGTGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 2.3e-003 -1089 249 -1089 -1089 153 -176 -1089 -1089 -1089 -76 233 -1089 -1089 -1089 24 132 -1089 -1089 249 -1089 -1089 233 -1089 -159 -164 -1089 -1089 150 -1089 -176 241 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.3e-003 0.000000 1.000000 0.000000 0.000000 0.947368 0.052632 0.000000 0.000000 0.000000 0.105263 0.894737 0.000000 0.000000 0.000000 0.210526 0.789474 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.000000 0.105263 0.105263 0.000000 0.000000 0.894737 0.000000 0.052632 0.947368 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGCTG MEME-1 regular expression -------------------------------------------------------------------------------- CAG[TG]GCTG -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF STSGCAGC MEME-2 width = 8 sites = 41 llr = 343 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::73: pos.-specific C 6332a1:9 probability G 4:78::7: matrix T :7:::1:: bits 2.5 * 2.2 * 2.0 * * 1.7 ** * Relative 1.5 * *** * Entropy 1.2 * *** ** (12.1 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGGCAGC consensus GCCC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16278073-16278193 20 3.29e-06 GTCTGACAGT CTGGCAGC ACTGTTCTTG chr2R:22686676-22686796 91 3.29e-06 ACCGGCTGAG CTGGCAGC TCTATCCCCC chr2R:10583353-10583473 106 3.29e-06 GTCGACGACG CTGGCAGC GCAGAAA chrX:4918765-4918885 47 3.29e-06 AACGAAACAT CTGGCAGC TCTGCGCAAC chr2R:8914053-8914173 43 8.42e-06 TTATCTCGAT GTGGCAGC ACGCTCGGTG chr2R:21323609-21323729 98 1.17e-05 TCATCTCCCT CTCGCAGC GTGCTCCCAG chrX:6352322-6352442 88 1.17e-05 TTTTCTTCTA CTCGCAGC CGTACGTAAT chr2R:10899197-10899317 36 1.36e-05 CCCTTTTAAC GCGGCAGC TTGTACCTTG chr2R:14212570-14212690 38 1.36e-05 AGTGgcggca gcggcagc agcagcagcT chr3L:12526940-12527060 95 2.20e-05 CGTTTCAATT CTGCCAGC TCCATTAACA chr3L:2372072-2372192 107 3.17e-05 ACCAATCCAT CTGGCAAC CCCACC chr3L:9899173-9899293 57 3.17e-05 TTGGCCAACA CTGGCAAC CCAAGCCAGG chr3R:17151779-17151899 63 3.67e-05 CTCACCGTGA CCGCCAGC TGTTGCGCAG chr3L:20186416-20186536 13 3.67e-05 CTGTAGGAGT CTGGCTGC TACAGAACCA chr3R:25039280-25039400 100 4.44e-05 CATCGGTCTT GTGCCAGC TCTATAAAAT chr3L:9371002-9371122 32 4.44e-05 TGAGGTTACA GTGCCAGC TGGAGATGGG chr2R:11095288-11095408 2 5.73e-05 G GTGGCAAC AAATGATTAT chr2L:203679-203799 46 5.73e-05 GCTCGACGAG GTGGCAAC GCTAGCCGGC chr2R:12173478-12173598 78 5.73e-05 CGCAAAGAAC GTGGCAAC GCTGCAGGCG chr3L:11253251-11253371 98 5.73e-05 CAACAAAAAA CTCCCAGC AGCAATAAAA chr3R:29869227-29869347 44 6.41e-05 CGCGCGGACT CTCGCCGC ATTTTTGCGT chr3R:25888718-25888838 22 7.12e-05 CTTCCTTTTG CTCGCAAC AACAAAACAA chr3L:11336514-11336634 112 7.12e-05 ATCCTTAAAA CTCGCAAC G chr3R:21633468-21633588 75 7.96e-05 CAGCGAATTA GCGGCAAC AGCTGAGCAC chrX:20507833-20507953 16 7.96e-05 GGTTCCCAGG CCCCCAGC CACGTCCCTA chr3L:16131981-16132101 95 7.96e-05 GCCTTTTTTC CCCCCAGC ACATTGTGCT chr2R:16951933-16952053 83 7.96e-05 CAGACGATAA CTCGCTGC CTTGCCTATC chrX:5086000-5086120 57 8.24e-05 GTTATTGCCT CCCGCCGC GTCTTATTTT chr2L:18677205-18677325 13 8.24e-05 GCATGTCAAC GCGGCTGC ACATTGCTTT chr3L:22065809-22065929 40 8.91e-05 AAGCTGTTTA CCCGCAAC TATCGGCTGC chr2R:17420058-17420178 99 9.59e-05 TCGCAACACT GTCGCCGC CCCAATCAAA chr2R:9693627-9693747 96 1.29e-04 TTTTGGAGAT CTGGCAGG CCTGAATAGT chrX:9152437-9152557 30 1.34e-04 GCCACCTATC CCGCCCGC TCGTACACAC chr3R:15792605-15792725 93 1.49e-04 CGTTGTCGCC CTGGCTAC GATAACTATG chr2R:8065488-8065608 112 1.49e-04 CCGACGCTct gccgctgc c chr3R:21856537-21856657 87 1.49e-04 GGGAACATCT CTGGCTAC TGAGATGACG chr3R:13446505-13446625 23 1.67e-04 TTCGGTTTCT GTGGCGGC CAGTGGGCTT chr3R:23820277-23820397 2 2.21e-04 A GCGGCAGG TTTTGACAAT chr2R:22649943-22650063 33 2.35e-04 ATATAGAGCA GTCGCACC CAAACCACAT chr3R:12630420-12630540 19 2.49e-04 TAGTGATGTG CTGCCACC TATCGACAGC chr3L:19618515-19618635 32 2.94e-04 ACTATCGTTA CTGGCAGA AAGTCGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16278073-16278193 3.3e-06 19_[+2]_93 chr2R:22686676-22686796 3.3e-06 90_[+2]_22 chr2R:10583353-10583473 3.3e-06 105_[+2]_7 chrX:4918765-4918885 3.3e-06 46_[+2]_66 chr2R:8914053-8914173 8.4e-06 42_[+2]_70 chr2R:21323609-21323729 1.2e-05 97_[+2]_15 chrX:6352322-6352442 1.2e-05 87_[+2]_25 chr2R:10899197-10899317 1.4e-05 35_[+2]_77 chr2R:14212570-14212690 1.4e-05 37_[+2]_75 chr3L:12526940-12527060 2.2e-05 94_[+2]_18 chr3L:2372072-2372192 3.2e-05 106_[+2]_6 chr3L:9899173-9899293 3.2e-05 56_[+2]_56 chr3R:17151779-17151899 3.7e-05 62_[+2]_50 chr3L:20186416-20186536 3.7e-05 12_[+2]_100 chr3R:25039280-25039400 4.4e-05 99_[+2]_13 chr3L:9371002-9371122 4.4e-05 31_[+2]_81 chr2R:11095288-11095408 5.7e-05 1_[+2]_111 chr2L:203679-203799 5.7e-05 45_[+2]_67 chr2R:12173478-12173598 5.7e-05 77_[+2]_35 chr3L:11253251-11253371 5.7e-05 97_[+2]_15 chr3R:29869227-29869347 6.4e-05 43_[+2]_69 chr3R:25888718-25888838 7.1e-05 21_[+2]_91 chr3L:11336514-11336634 7.1e-05 111_[+2]_1 chr3R:21633468-21633588 8e-05 74_[+2]_38 chrX:20507833-20507953 8e-05 15_[+2]_97 chr3L:16131981-16132101 8e-05 94_[+2]_18 chr2R:16951933-16952053 8e-05 82_[+2]_30 chrX:5086000-5086120 8.2e-05 56_[+2]_56 chr2L:18677205-18677325 8.2e-05 12_[+2]_100 chr3L:22065809-22065929 8.9e-05 39_[+2]_73 chr2R:17420058-17420178 9.6e-05 98_[+2]_14 chr2R:9693627-9693747 0.00013 95_[+2]_17 chrX:9152437-9152557 0.00013 29_[+2]_83 chr3R:15792605-15792725 0.00015 92_[+2]_20 chr2R:8065488-8065608 0.00015 111_[+2]_1 chr3R:21856537-21856657 0.00015 86_[+2]_26 chr3R:13446505-13446625 0.00017 22_[+2]_90 chr3R:23820277-23820397 0.00022 1_[+2]_111 chr2R:22649943-22650063 0.00023 32_[+2]_80 chr3R:12630420-12630540 0.00025 18_[+2]_94 chr3L:19618515-19618635 0.00029 31_[+2]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STSGCAGC width=8 seqs=41 chrX:16278073-16278193 ( 20) CTGGCAGC 1 chr2R:22686676-22686796 ( 91) CTGGCAGC 1 chr2R:10583353-10583473 ( 106) CTGGCAGC 1 chrX:4918765-4918885 ( 47) CTGGCAGC 1 chr2R:8914053-8914173 ( 43) GTGGCAGC 1 chr2R:21323609-21323729 ( 98) CTCGCAGC 1 chrX:6352322-6352442 ( 88) CTCGCAGC 1 chr2R:10899197-10899317 ( 36) GCGGCAGC 1 chr2R:14212570-14212690 ( 38) GCGGCAGC 1 chr3L:12526940-12527060 ( 95) CTGCCAGC 1 chr3L:2372072-2372192 ( 107) CTGGCAAC 1 chr3L:9899173-9899293 ( 57) CTGGCAAC 1 chr3R:17151779-17151899 ( 63) CCGCCAGC 1 chr3L:20186416-20186536 ( 13) CTGGCTGC 1 chr3R:25039280-25039400 ( 100) GTGCCAGC 1 chr3L:9371002-9371122 ( 32) GTGCCAGC 1 chr2R:11095288-11095408 ( 2) GTGGCAAC 1 chr2L:203679-203799 ( 46) GTGGCAAC 1 chr2R:12173478-12173598 ( 78) GTGGCAAC 1 chr3L:11253251-11253371 ( 98) CTCCCAGC 1 chr3R:29869227-29869347 ( 44) CTCGCCGC 1 chr3R:25888718-25888838 ( 22) CTCGCAAC 1 chr3L:11336514-11336634 ( 112) CTCGCAAC 1 chr3R:21633468-21633588 ( 75) GCGGCAAC 1 chrX:20507833-20507953 ( 16) CCCCCAGC 1 chr3L:16131981-16132101 ( 95) CCCCCAGC 1 chr2R:16951933-16952053 ( 83) CTCGCTGC 1 chrX:5086000-5086120 ( 57) CCCGCCGC 1 chr2L:18677205-18677325 ( 13) GCGGCTGC 1 chr3L:22065809-22065929 ( 40) CCCGCAAC 1 chr2R:17420058-17420178 ( 99) GTCGCCGC 1 chr2R:9693627-9693747 ( 96) CTGGCAGG 1 chrX:9152437-9152557 ( 30) CCGCCCGC 1 chr3R:15792605-15792725 ( 93) CTGGCTAC 1 chr2R:8065488-8065608 ( 112) GCCGCTGC 1 chr3R:21856537-21856657 ( 87) CTGGCTAC 1 chr3R:13446505-13446625 ( 23) GTGGCGGC 1 chr3R:23820277-23820397 ( 2) GCGGCAGG 1 chr2R:22649943-22650063 ( 33) GTCGCACC 1 chr3R:12630420-12630540 ( 19) CTGCCACC 1 chr3L:19618515-19618635 ( 32) CTGGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 1.0e+000 -1200 183 104 -1200 -1200 72 -1200 116 -1200 94 189 -1200 -1200 30 213 -1200 -1200 249 -1200 -1200 116 -87 -287 -111 -29 -187 194 -1200 -374 238 -187 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.0e+000 0.000000 0.634146 0.365854 0.000000 0.000000 0.292683 0.000000 0.707317 0.000000 0.341463 0.658537 0.000000 0.000000 0.219512 0.780488 0.000000 0.000000 1.000000 0.000000 0.000000 0.731707 0.097561 0.024390 0.146341 0.268293 0.048780 0.682927 0.000000 0.024390 0.926829 0.048780 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STSGCAGC MEME-2 regular expression -------------------------------------------------------------------------------- [CG][TC][GC][GC]CA[GA]C -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GRKGGCGC MEME-3 width = 8 sites = 9 llr = 101 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C :::::9:a probability G a769a:a: matrix T ::41:1:: bits 2.5 * * ** 2.2 * * ** 2.0 * ***** 1.7 * ***** Relative 1.5 * ***** Entropy 1.2 ******** (16.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCGC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10899197-10899317 70 1.01e-06 GCGACGTGCA GGGGGCGC CCTGTACGTT chr3L:19294455-19294575 50 2.80e-06 ACTCCGCATA GGTGGCGC ATGCCTCTCT chr3L:8748991-8749111 34 2.80e-06 CTCACACATA GGTGGCGC ATTCTGCACA chr3R:21856537-21856657 64 2.80e-06 AGTTTTGAGA GGTGGCGC GAGTAGGGAA chr4:406939-407059 96 4.65e-06 ATTTCCCACA GAGGGCGC CTGTAGTGGT chr3R:18918609-18918729 95 4.65e-06 gtagtaCATA GAGGGCGC TTTTGTTGTT chr3L:12526940-12527060 78 7.93e-06 CTGACCGCCA GATGGCGC GTTTCAATTC chr3R:9237074-9237194 75 1.15e-05 GAGCAAGAGC GGGGGTGC GAGCGCAAAA chrX:10086367-10086487 80 1.15e-05 TGCGAGTCCC GGGTGCGC ACATCTGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10899197-10899317 1e-06 69_[+3]_43 chr3L:19294455-19294575 2.8e-06 49_[+3]_63 chr3L:8748991-8749111 2.8e-06 33_[+3]_79 chr3R:21856537-21856657 2.8e-06 63_[+3]_49 chr4:406939-407059 4.6e-06 95_[+3]_17 chr3R:18918609-18918729 4.6e-06 94_[+3]_18 chr3L:12526940-12527060 7.9e-06 77_[+3]_35 chr3R:9237074-9237194 1.2e-05 74_[+3]_38 chrX:10086367-10086487 1.2e-05 79_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRKGGCGC width=8 seqs=9 chr2R:10899197-10899317 ( 70) GGGGGCGC 1 chr3L:19294455-19294575 ( 50) GGTGGCGC 1 chr3L:8748991-8749111 ( 34) GGTGGCGC 1 chr3R:21856537-21856657 ( 64) GGTGGCGC 1 chr4:406939-407059 ( 96) GAGGGCGC 1 chr3R:18918609-18918729 ( 95) GAGGGCGC 1 chr3L:12526940-12527060 ( 78) GATGGCGC 1 chr3R:9237074-9237194 ( 75) GGGGGTGC 1 chrX:10086367-10086487 ( 80) GGGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.9e+003 -982 -982 249 -982 3 -982 190 -982 -982 -982 164 49 -982 -982 232 -151 -982 -982 249 -982 -982 232 -982 -151 -982 -982 249 -982 -982 249 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.9e+003 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- G[GA][GT]GGCGC -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTSGGC MEME-4 width = 8 sites = 12 llr = 125 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:a:72:8 probability G 2a:138a: matrix T :::9:1:3 bits 2.5 ** * 2.2 ** * 2.0 ** * 1.7 *** * Relative 1.5 *** **** Entropy 1.2 ******** (15.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCGGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16625233-16625353 25 1.79e-06 CGTCACCACA CGCTCGGC TTAAACCTGT chr2R:8065488-8065608 95 1.79e-06 CGGTATCTCC CGCTCGGC CGACGCTctg chr2L:4847380-4847500 110 3.58e-06 GGTATCTGGA CGCTGGGC AAT chr2R:10583353-10583473 67 5.37e-06 TTGTTGTTGC CGCTCCGC CGGCGGCGTT chr3L:14002065-14002185 56 5.37e-06 AACGATCTAT CGCTCCGC TGTAGTGTGA chr2R:8914053-8914173 52 1.03e-05 TGTGGCAGCA CGCTCGGT GTTCAGGGCT chr3R:9677855-9677975 68 1.03e-05 CTCCGCAGCG CGCTCGGT AACTCTGTTT chrX:4918765-4918885 84 1.03e-05 GAAGCCTCTT CGCTCGGT TTGCAACACC chrX:20507833-20507953 47 1.49e-05 TGAGAGAAAG GGCTGGGC CACTTTACTT chr3L:10516303-10516423 71 1.49e-05 TATGCCATGC GGCTGGGC GGACAaagaa chr3R:12369291-12369411 61 1.91e-05 TGAAGCGCCC CGCGGGGC GTGGCAAGGT chr3L:19897089-19897209 55 2.23e-05 CCCGCTCACT CGCTCTGC TCTCTTGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16625233-16625353 1.8e-06 24_[+4]_88 chr2R:8065488-8065608 1.8e-06 94_[+4]_18 chr2L:4847380-4847500 3.6e-06 109_[+4]_3 chr2R:10583353-10583473 5.4e-06 66_[+4]_46 chr3L:14002065-14002185 5.4e-06 55_[+4]_57 chr2R:8914053-8914173 1e-05 51_[+4]_61 chr3R:9677855-9677975 1e-05 67_[+4]_45 chrX:4918765-4918885 1e-05 83_[+4]_29 chrX:20507833-20507953 1.5e-05 46_[+4]_66 chr3L:10516303-10516423 1.5e-05 70_[+4]_42 chr3R:12369291-12369411 1.9e-05 60_[+4]_52 chr3L:19897089-19897209 2.2e-05 54_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTSGGC width=8 seqs=12 chr3R:16625233-16625353 ( 25) CGCTCGGC 1 chr2R:8065488-8065608 ( 95) CGCTCGGC 1 chr2L:4847380-4847500 ( 110) CGCTGGGC 1 chr2R:10583353-10583473 ( 67) CGCTCCGC 1 chr3L:14002065-14002185 ( 56) CGCTCCGC 1 chr2R:8914053-8914173 ( 52) CGCTCGGT 1 chr3R:9677855-9677975 ( 68) CGCTCGGT 1 chrX:4918765-4918885 ( 84) CGCTCGGT 1 chrX:20507833-20507953 ( 47) GGCTGGGC 1 chr3L:10516303-10516423 ( 71) GGCTGGGC 1 chr3R:12369291-12369411 ( 61) CGCGGGGC 1 chr3L:19897089-19897209 ( 55) CGCTCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 3.3e+003 -1023 223 -10 -1023 -1023 -1023 249 -1023 -1023 249 -1023 -1023 -1023 -1023 -110 153 -1023 190 90 -1023 -1023 -9 207 -192 -1023 -1023 249 -1023 -1023 207 -1023 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.3e+003 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.666667 0.333333 0.000000 0.000000 0.166667 0.750000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSGGC MEME-4 regular expression -------------------------------------------------------------------------------- CGCT[CG]GG[CT] -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGMCACC MEME-5 width = 8 sites = 8 llr = 89 E-value = 5.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::4:8:: pos.-specific C :a16a:aa probability G 9:9::3:: matrix T 1::::::: bits 2.5 * * ** 2.2 * * ** 2.0 ** * ** 1.7 *** * ** Relative 1.5 *** * ** Entropy 1.2 ***** ** (16.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16800161-16800281 59 1.85e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr2L:6797526-6797646 48 1.85e-06 CAACTTTTTA GCGCCACC TGGCTGAATA chrX:7901724-7901844 74 1.85e-06 AATATCGTTT GCGCCACC ATCCCTGGTC chrX:7702999-7703119 50 6.26e-06 gaagactcaa gcgacacc accctcatga chrX:5901882-5902002 24 8.11e-06 GCGAGAGCGA GCGACGCC TATGGCGACG chr2R:21323609-21323729 61 8.11e-06 AATTGACAAA GCGACGCC GCCATGTCGC chrX:6800988-6801108 7 9.96e-06 TTCCCC GCCCCACC TGCTGCCTTT chrX:9152437-9152557 18 1.43e-05 AACTGTACCA TCGCCACC TATCCCGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16800161-16800281 1.9e-06 58_[+5]_54 chr2L:6797526-6797646 1.9e-06 47_[+5]_65 chrX:7901724-7901844 1.9e-06 73_[+5]_39 chrX:7702999-7703119 6.3e-06 49_[+5]_63 chrX:5901882-5902002 8.1e-06 23_[+5]_89 chr2R:21323609-21323729 8.1e-06 60_[+5]_52 chrX:6800988-6801108 1e-05 6_[+5]_106 chrX:9152437-9152557 1.4e-05 17_[+5]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGMCACC width=8 seqs=8 chr2R:16800161-16800281 ( 59) GCGCCACC 1 chr2L:6797526-6797646 ( 48) GCGCCACC 1 chrX:7901724-7901844 ( 74) GCGCCACC 1 chrX:7702999-7703119 ( 50) GCGACACC 1 chrX:5901882-5902002 ( 24) GCGACGCC 1 chr2R:21323609-21323729 ( 61) GCGACGCC 1 chrX:6800988-6801108 ( 7) GCCCCACC 1 chrX:9152437-9152557 ( 18) TCGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 5.8e+004 -965 -965 229 -134 -965 249 -965 -965 -965 -51 229 -965 20 181 -965 -965 -965 249 -965 -965 119 -965 49 -965 -965 249 -965 -965 -965 249 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.8e+004 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCACC MEME-5 regular expression -------------------------------------------------------------------------------- GCG[CA]C[AG]CC -------------------------------------------------------------------------------- Time 32.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14212570-14212690 1.75e-03 31_[+2(1.36e-05)]_81 chr3L:11253052-11253172 9.94e-01 120 chr3L:16129008-16129128 6.78e-02 120 chr2R:11529569-11529689 2.85e-02 120 chr3L:11253251-11253371 1.07e-01 97_[+2(5.73e-05)]_15 chr3R:10641418-10641538 1.00e+00 120 chrX:20511568-20511688 1.99e-01 120 chr2L:11199184-11199304 5.57e-01 120 chr3L:12803948-12804068 8.93e-01 120 chr3L:17427183-17427303 5.76e-01 120 chr3R:14351561-14351681 9.93e-01 120 chr3R:21856537-21856657 1.24e-04 63_[+3(2.80e-06)]_49 chr2L:21310487-21310607 4.14e-01 120 chrX:7702999-7703119 1.95e-03 49_[+5(6.26e-06)]_63 chr3L:1568773-1568893 2.13e-01 92_[+3(6.11e-05)]_20 chr2R:8065488-8065608 2.59e-05 94_[+4(1.79e-06)]_3_[+4(2.23e-05)]_\ 7 chr3R:20833844-20833964 4.54e-03 89_[+1(1.50e-05)]_23 chr2R:18834760-18834880 2.32e-01 120 chr3R:22367313-22367433 9.99e-01 120 chr2L:20675994-20676114 4.89e-01 120 chr3L:19618515-19618635 2.53e-02 120 chrX:4918765-4918885 1.21e-05 46_[+2(3.29e-06)]_29_[+4(1.03e-05)]_\ 29 chr3R:27274608-27274728 2.80e-01 120 chr3L:8748991-8749111 1.65e-03 33_[+3(2.80e-06)]_79 chr3R:14370294-14370414 6.96e-02 120 chr3L:11336514-11336634 1.85e-02 111_[+2(7.12e-05)]_1 chr2R:12173478-12173598 4.97e-02 77_[+2(5.73e-05)]_35 chr3L:18748434-18748554 9.98e-01 120 chr3L:14002065-14002185 6.01e-03 55_[+4(5.37e-06)]_57 chr2R:17420058-17420178 2.19e-04 99_[+5(1.60e-05)]_13 chr3R:5861697-5861817 2.81e-01 120 chr2R:10583353-10583473 4.45e-07 66_[+4(5.37e-06)]_31_[+2(3.29e-06)]_\ 7 chr2R:22661310-22661430 8.01e-01 120 chr2L:8082987-8083107 2.83e-02 120 chr3R:28676985-28677105 3.08e-01 120 chr2L:19141011-19141131 9.95e-01 120 chr3L:19905609-19905729 1.00e-01 120 chr3L:1151775-1151895 9.17e-01 120 chr2L:18150825-18150945 9.21e-01 120 chr2L:13367493-13367613 3.14e-01 120 chr2L:11091317-11091437 9.45e-01 120 chr2L:2182070-2182190 5.91e-03 42_[+1(1.50e-05)]_70 chr3L:9371002-9371122 4.19e-02 31_[+2(4.44e-05)]_81 chrX:10362922-10363042 7.30e-01 120 chr2R:16951933-16952053 3.06e-02 82_[+2(7.96e-05)]_30 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************