******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sug.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:20431758-20431878 1.0000 120 chr3R:25300687-25300807 1.0000 120 chr2L:5285999-5286119 1.0000 120 chrX:5915147-5915267 1.0000 120 chr2R:22591144-22591264 1.0000 120 chr3R:31197734-31197854 1.0000 120 chr3R:10251974-10252094 1.0000 120 chr2L:3450060-3450180 1.0000 120 chr3R:11683803-11683923 1.0000 120 chr3L:21281845-21281965 1.0000 120 chr3R:10700790-10700910 1.0000 120 chr3R:5571904-5572024 1.0000 120 chrX:2197943-2198063 1.0000 120 chr3L:12827842-12827962 1.0000 120 chr3L:14779429-14779549 1.0000 120 chr3L:3054239-3054359 1.0000 120 chr3R:9049721-9049841 1.0000 120 chr3L:22737906-22738026 1.0000 120 chr3R:12372967-12373087 1.0000 120 chr2L:136381-136501 1.0000 120 chr3R:30428627-30428747 1.0000 120 chrX:21353686-21353806 1.0000 120 chr3R:18449313-18449433 1.0000 120 chr3R:7535745-7535865 1.0000 120 chr2L:7972461-7972581 1.0000 120 chr3R:19742982-19743102 1.0000 120 chr3R:22520601-22520721 1.0000 120 chr3R:30599542-30599662 1.0000 120 chr3R:12370384-12370504 1.0000 120 chr3R:21869786-21869906 1.0000 120 chr2R:7712484-7712604 1.0000 120 chr3R:31109204-31109324 1.0000 120 chr3R:11666427-11666547 1.0000 120 chr2L:7435649-7435769 1.0000 120 chr3R:11684479-11684599 1.0000 120 chr3L:4232863-4232983 1.0000 120 chr2R:17120326-17120446 1.0000 120 chrX:15113755-15113875 1.0000 120 chr2L:9619055-9619175 1.0000 120 chrX:23072184-23072304 1.0000 120 chr3L:21839856-21839976 1.0000 120 chr2L:21299649-21299769 1.0000 120 chr3R:10877931-10878051 1.0000 120 chrX:930519-930639 1.0000 120 chr2R:15215631-15215751 1.0000 120 chr3R:25347011-25347131 1.0000 120 chr2R:24297610-24297730 1.0000 120 chr2L:7795245-7795365 1.0000 120 chr2L:4950871-4950991 1.0000 120 chr2L:8994155-8994275 1.0000 120 chrX:11420910-11421030 1.0000 120 chr3L:9846120-9846240 1.0000 120 chr3R:5610940-5611060 1.0000 120 chrX:16281855-16281975 1.0000 120 chr3R:25314901-25315021 1.0000 120 chr3L:18826086-18826206 1.0000 120 chrX:3414119-3414239 1.0000 120 chr3L:2504364-2504484 1.0000 120 chr2R:10883357-10883477 1.0000 120 chr2L:18781603-18781723 1.0000 120 chr3R:5199967-5200087 1.0000 120 chr3R:10870771-10870891 1.0000 120 chr3L:11005271-11005391 1.0000 120 chr2L:2806825-2806945 1.0000 120 chrX:2175537-2175657 1.0000 120 chr3L:3236459-3236579 1.0000 120 chr3R:19100227-19100347 1.0000 120 chrX:6062295-6062415 1.0000 120 chr3L:4293813-4293933 1.0000 120 chr3R:25899849-25899969 1.0000 120 chrX:16746066-16746186 1.0000 120 chr3L:8346750-8346870 1.0000 120 chr2L:5211069-5211189 1.0000 120 chr3L:2254147-2254267 1.0000 120 chr2R:21156434-21156554 1.0000 120 chr3R:7548900-7549020 1.0000 120 chrX:6355269-6355389 1.0000 120 chr2R:16139629-16139749 1.0000 120 chr3R:30459691-30459811 1.0000 120 chr2L:10393578-10393698 1.0000 120 chr3R:25238886-25239006 1.0000 120 chrX:7303963-7304083 1.0000 120 chr3R:15339252-15339372 1.0000 120 chr2L:306561-306681 1.0000 120 chr3R:12365993-12366113 1.0000 120 chr2R:7710254-7710374 1.0000 120 chr3L:19258272-19258392 1.0000 120 chr3L:1745637-1745757 1.0000 120 chr3R:30779425-30779545 1.0000 120 chrX:20697717-20697837 1.0000 120 chr3R:30064021-30064141 1.0000 120 chr2R:6645830-6645950 1.0000 120 chrX:13636881-13637001 1.0000 120 chr3L:6916317-6916437 1.0000 120 chr2L:18955799-18955919 1.0000 120 chr3R:16008369-16008489 1.0000 120 chr2L:20828820-20828940 1.0000 120 chr3L:6915510-6915630 1.0000 120 chr3R:12404732-12404852 1.0000 120 chr2R:15557553-15557673 1.0000 120 chr2L:9691366-9691486 1.0000 120 chr3R:22024918-22025038 1.0000 120 chr2L:3450269-3450389 1.0000 120 chr3R:8642389-8642509 1.0000 120 chr2L:3561066-3561186 1.0000 120 chrX:598514-598634 1.0000 120 chrX:3430031-3430151 1.0000 120 chr3L:4231800-4231920 1.0000 120 chr2R:19332473-19332593 1.0000 120 chr2L:13779288-13779408 1.0000 120 chr3L:22458292-22458412 1.0000 120 chr3L:7759974-7760094 1.0000 120 chr3L:8097268-8097388 1.0000 120 chr2L:451863-451983 1.0000 120 chr3R:8518846-8518966 1.0000 120 chrX:6715845-6715965 1.0000 120 chr3R:31435787-31435907 1.0000 120 chrX:492815-492935 1.0000 120 chr2L:13846340-13846460 1.0000 120 chr2R:24140259-24140379 1.0000 120 chr3L:17922580-17922700 1.0000 120 chrX:16706887-16707007 1.0000 120 chr2L:3445784-3445904 1.0000 120 chrX:15451087-15451207 1.0000 120 chr2R:18815220-18815340 1.0000 120 chr3L:21400369-21400489 1.0000 120 chr2R:17694519-17694639 1.0000 120 chr2R:15560331-15560451 1.0000 120 chr2L:10146043-10146163 1.0000 120 chr3R:28325101-28325221 1.0000 120 chr2R:19683043-19683163 1.0000 120 chr3R:7058170-7058290 1.0000 120 chr2L:6006887-6007007 1.0000 120 chr3L:217617-217737 1.0000 120 chr3R:5309399-5309519 1.0000 120 chr2L:20883017-20883137 1.0000 120 chr2R:17598588-17598708 1.0000 120 chr3L:8059920-8060040 1.0000 120 chrX:509261-509381 1.0000 120 chr2L:13881622-13881742 1.0000 120 chr3L:10094876-10094996 1.0000 120 chr3L:1202942-1203062 1.0000 120 chr2L:311050-311170 1.0000 120 chr3R:20954644-20954764 1.0000 120 chrX:9596848-9596968 1.0000 120 chr2R:19324888-19325008 1.0000 120 chr3L:19648799-19648919 1.0000 120 chr2R:11734446-11734566 1.0000 120 chr2L:8940858-8940978 1.0000 120 chr2R:8084566-8084686 1.0000 120 chr3R:21758855-21758975 1.0000 120 chr3L:14782474-14782594 1.0000 120 chr3L:6976773-6976893 1.0000 120 chr2R:6770384-6770504 1.0000 120 chr2R:14246739-14246859 1.0000 120 chrX:15307518-15307638 1.0000 120 chr2R:18042560-18042680 1.0000 120 chr2R:8952993-8953113 1.0000 120 chr3R:29788286-29788406 1.0000 120 chr2L:107187-107307 1.0000 120 chr2L:2372269-2372389 1.0000 120 chr3R:23226271-23226391 1.0000 120 chr2R:9891002-9891122 1.0000 120 chr3R:22666438-22666558 1.0000 120 chr2L:85855-85975 1.0000 120 chr3R:25321149-25321269 1.0000 120 chr2R:12261089-12261209 1.0000 120 chr2L:11942980-11943100 1.0000 120 chr3R:24053779-24053899 1.0000 120 chr2R:7953795-7953915 1.0000 120 chr3L:6913931-6914051 1.0000 120 chr2R:19363393-19363513 1.0000 120 chr2R:17697583-17697703 1.0000 120 chr3R:16347792-16347912 1.0000 120 chr2L:2372476-2372596 1.0000 120 chr3R:14364283-14364403 1.0000 120 chr3L:14559254-14559374 1.0000 120 chr3L:1964858-1964978 1.0000 120 chr2L:2808465-2808585 1.0000 120 chr2L:8009962-8010082 1.0000 120 chrX:15522532-15522652 1.0000 120 chr2L:8991666-8991786 1.0000 120 chr3L:21498774-21498894 1.0000 120 chr3R:30201271-30201391 1.0000 120 chr2L:13842741-13842861 1.0000 120 chr3L:16666588-16666708 1.0000 120 chr3L:7760174-7760294 1.0000 120 chr2R:7926474-7926594 1.0000 120 chr3L:8709107-8709227 1.0000 120 chr2R:12926332-12926452 1.0000 120 chrX:19501386-19501506 1.0000 120 chr3L:162357-162477 1.0000 120 chr3R:15231866-15231986 1.0000 120 chr2R:24684238-24684358 1.0000 120 chr2L:4389504-4389624 1.0000 120 chr3L:3415504-3415624 1.0000 120 chr2L:2362328-2362448 1.0000 120 chrX:6805533-6805653 1.0000 120 chr2L:21367464-21367584 1.0000 120 chr2L:2198104-2198224 1.0000 120 chr3R:27705776-27705896 1.0000 120 chrX:16932384-16932504 1.0000 120 chr3L:4550290-4550410 1.0000 120 chr2R:17750564-17750684 1.0000 120 chrX:7316236-7316356 1.0000 120 chrX:2590726-2590846 1.0000 120 chrX:9200479-9200599 1.0000 120 chr3L:12078059-12078179 1.0000 120 chr3R:21082638-21082758 1.0000 120 chr3R:10884742-10884862 1.0000 120 chr3R:22453541-22453661 1.0000 120 chr2R:15999653-15999773 1.0000 120 chr3R:6809955-6810075 1.0000 120 chrX:18857537-18857657 1.0000 120 chr2L:6255597-6255717 1.0000 120 chr2R:8451939-8452059 1.0000 120 chr2L:14234705-14234825 1.0000 120 chr3L:16652753-16652873 1.0000 120 chr3L:19565410-19565530 1.0000 120 chr3R:19834105-19834225 1.0000 120 chr3L:9209794-9209914 1.0000 120 chr2R:17756469-17756589 1.0000 120 chr3R:16446958-16447078 1.0000 120 chr3R:14748057-14748177 1.0000 120 chr2R:8459916-8460036 1.0000 120 chr2L:16448165-16448285 1.0000 120 chr2L:10529097-10529217 1.0000 120 chr2R:12952590-12952710 1.0000 120 chr3L:4686755-4686875 1.0000 120 chrX:14946715-14946835 1.0000 120 chr2R:24985083-24985203 1.0000 120 chr2L:19421773-19421893 1.0000 120 chr2R:22116398-22116518 1.0000 120 chr3R:7514550-7514670 1.0000 120 chr3L:1119484-1119604 1.0000 120 chr2R:7626468-7626588 1.0000 120 chr2L:6819184-6819304 1.0000 120 chr3R:27253955-27254075 1.0000 120 chr3R:16200759-16200879 1.0000 120 chr3L:604348-604468 1.0000 120 chr2L:10456052-10456172 1.0000 120 chr3R:26259998-26260118 1.0000 120 chr2R:16009135-16009255 1.0000 120 chr3R:20823874-20823994 1.0000 120 chr3R:30105329-30105449 1.0000 120 chr2L:8220424-8220544 1.0000 120 chr3R:5497702-5497822 1.0000 120 chr3L:11273102-11273222 1.0000 120 chr3L:16137287-16137407 1.0000 120 chr3R:24016442-24016562 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sug/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sug.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.229 G 0.23 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.229 G 0.23 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BYGATAAG MEME-1 width = 8 sites = 100 llr = 762 E-value = 1.2e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:a:aa1 pos.-specific C 44:::::2 probability G 4:a::::7 matrix T 25::a::1 bits 2.1 * 1.9 *** * 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.0 bits) 0.9 ***** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTGATAAG consensus GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8940858-8940978 55 3.48e-05 GAGCGGTACG CTGATAAG AAATCAATGG chr3L:19648799-19648919 61 3.48e-05 GTACTGACTG CTGATAAG ATTCCGTCCA chr2R:15560331-15560451 43 3.48e-05 GTGGACTTTC GTGATAAG CTGATTTCGA chr2L:451863-451983 74 3.48e-05 ATTTATGGCA CTGATAAG ATTAGCTTTG chr2L:13779288-13779408 77 3.48e-05 ACGATCTCGG CTGATAAG ATAGCAAAGG chrX:3430031-3430151 60 3.48e-05 TCGCCGGGGG GTGATAAG TCCTCCTTTG chr2L:9691366-9691486 57 3.48e-05 CGATTCCATG CTGATAAG CCCTCAAGGG chr3R:15339252-15339372 71 3.48e-05 TAGACCATTA GTGATAAG ACCACCCGAT chrX:6355269-6355389 6 3.48e-05 GCGAA CTGATAAG CGTGACAAAT chr3L:2504364-2504484 67 3.48e-05 AAAATCAACA CTGATAAG GATGCAACAT chr3R:25347011-25347131 65 3.48e-05 GATAACCTGT CTGATAAG CGGGGTCCCA chrX:23072184-23072304 3 3.48e-05 AG CTGATAAG ACTCTAGAGC chrX:15113755-15113875 24 3.48e-05 AATGTTGTAA GTGATAAG AAATGGGCCC chr3L:22737906-22738026 35 3.48e-05 CACAATTCAA CTGATAAG AACTGGCCCC chr3R:9049721-9049841 76 3.48e-05 ACGTCTCCCA CTGATAAG CCTTTGAGTT chr3L:14779429-14779549 87 3.48e-05 GTTTATGGCA CTGATAAG CGACTATTGA chrX:2197943-2198063 76 3.48e-05 TGAGCCGAGC CTGATAAG CCGCGTTGAG chr3R:5571904-5572024 108 3.48e-05 GGGCCCATGG CTGATAAG ATATG chr3R:10251974-10252094 88 3.48e-05 GATAACCGGG GTGATAAG CCCGGTTCAG chr3R:5497702-5497822 51 6.41e-05 TTCCACCTAA GCGATAAG CCAAGATGGA chr2R:12952590-12952710 101 6.41e-05 CGTTGAAGGG GCGATAAG CATGTCGAAA chrX:7316236-7316356 83 6.41e-05 GGAGGCGGTG GCGATAAG ATTTGTGCAA chr2R:17750564-17750684 58 6.41e-05 AGGTTGTCTG GCGATAAG ATGACCAGCC chr2R:24684238-24684358 101 6.41e-05 CGGCCCGAGG GCGATAAG ATATGGTGGC chr3L:162357-162477 12 6.41e-05 TTTCTGCTGT CCGATAAG AACCGACCAC chr2L:20883017-20883137 82 6.41e-05 TTGTGAACCG CCGATAAG TAGTTAAATT chr2L:6006887-6007007 34 6.41e-05 TCCTGGTGGC CCGATAAG GCCTGTTGGT chr2R:17694519-17694639 44 6.41e-05 CTTGGGGTGA GCGATAAG TGGTGGAATG chr3L:8097268-8097388 96 6.41e-05 TGTTACCTTA CCGATAAG TTTATGTCAG chr3L:22458292-22458412 89 6.41e-05 TCTAATCCGA CCGATAAG GTGGAGCGTG chr3R:19100227-19100347 13 6.41e-05 TGCTGAGTGG GCGATAAG CGAAACGTGA chrX:930519-930639 93 6.41e-05 GCCCGACGGA GCGATAAG TGGGGCCCGT chr2L:7435649-7435769 99 6.41e-05 AATACCTTAG GCGATAAG TTTAAGATAA chr3R:18449313-18449433 18 6.41e-05 GTGTTTTGCT GCGATAAG CGTTTTGATA chr3R:24016442-24016562 29 8.48e-05 GGGCGTGTAC TTGATAAG CTTTAACACC chr3L:16137287-16137407 88 8.48e-05 TGCATTGTGG TTGATAAG AAATACGTGA chr2L:19421773-19421893 88 8.48e-05 CTTTGGGGTC TTGATAAG ATATATAGAC chr2L:6255597-6255717 72 8.48e-05 AAAAAAAGCT TTGATAAG AACtgtgcgt chr3R:7058170-7058290 83 8.48e-05 CCCCGGGGCT TTGATAAG GTGTCGCAAA chr3R:12404732-12404852 95 8.48e-05 GGTTATCTGC TTGATAAG ATCTGGGTCG chrX:2175537-2175657 81 8.48e-05 GAAGTTCAGA TTGATAAG GCCCACACAG chr2L:18781603-18781723 78 8.48e-05 GTGTGGGGGC TTGATAAG TGGGGATCGA chr2R:15215631-15215751 43 8.48e-05 CCCCAGGAAC TTGATAAG GATTCCTAGA chr3L:12827842-12827962 41 8.48e-05 GCCATGGTTC TTGATAAG GTCAGAACCC chr2L:5285999-5286119 23 8.48e-05 GATAACTAAT TTGATAAG TAATACTTTG chr3R:21082638-21082758 62 1.02e-04 GGCCTACTGC TCGATAAG AAGCCATGGC chr3R:15231866-15231986 37 1.02e-04 GTATGGGGTC TCGATAAG CGTTATTTTT chr2R:11734446-11734566 102 1.02e-04 GCATTTCCAA TCGATAAG TGATAGTCAG chrX:6062295-6062415 92 1.02e-04 ATCGGGCAAA TCGATAAG CGCCGCGACA chr2L:4950871-4950991 2 1.02e-04 A TCGATAAG AATGGAGGAA chr2R:16009135-16009255 108 1.37e-04 ACCTTAATCG CTGATAAC GCCAG chr3R:16200759-16200879 79 1.37e-04 GGCCAAATTT GTGATAAC TAAACTCGTA chr3L:4550290-4550410 41 1.37e-04 TCGGATTTCA GTGATAAC ACACCCATGG chr3L:217617-217737 99 1.37e-04 ATCTGCGGCA GTGATAAC GTGAACTACT chr3L:2254147-2254267 83 1.37e-04 CAAGCACTTG CTGATAAC ATGCGACCAG chr2R:22591144-22591264 79 1.37e-04 CCCCCTCGAG CTGATAAC GAAATGCGGA chr3R:25300687-25300807 88 1.37e-04 CGAATTCAAA CTGATAAC GATTTCGCCA chr3R:16446958-16447078 52 1.66e-04 TCTAATCTAA GCGATAAC CCCGCCCCCC chrX:598514-598634 53 1.66e-04 GCCAGTGGGG CCGATAAC GGGAGCCCGG chrX:20697717-20697837 28 1.66e-04 CCGAGCATTA GCGATAAC AACTATTTGT chrX:7303963-7304083 70 1.66e-04 GGGCCCCCAA CCGATAAC CCGGGGGCAC chr3L:3236459-3236579 95 1.66e-04 AAACAATAAA GCGATAAC CACCATCCAC chr3R:20823874-20823994 4 2.00e-04 TTA CAGATAAG AAATGTTTTC chr3R:10884742-10884862 22 2.00e-04 CGCCGTGCCG GAGATAAG CTGACCGGCT chr2L:13881622-13881742 95 2.00e-04 TTTTGCAACT GAGATAAG TCTGGAATAT chr2R:24140259-24140379 79 2.00e-04 GCTGGCCCTC CAGATAAG ATAGCGTTCC chrX:16746066-16746186 83 2.00e-04 TGGAGCATCG GAGATAAG TGAAAATTGC chr3R:10870771-10870891 54 2.00e-04 TGGGGCAGTG CAGATAAG CAAATCCAAG chrX:492815-492935 37 2.21e-04 TTTTTGGGTG TTGATAAC TTGAGTGGTA chr3R:5610940-5611060 60 2.21e-04 GGGGACTATA TTGATAAC AAATTGGCTC chr3L:21839856-21839976 74 2.21e-04 TCGCGTGATT TTGATAAC CAGCCAAACG chr2L:8220424-8220544 67 2.41e-04 CCCATTTTTA ATGATAAG GCTTTCTTTG chr3R:11683803-11683923 17 2.41e-04 ACTGACCATA ATGATAAG AGTACAGGTA chr2R:17756469-17756589 27 2.99e-04 GTTCAGCATC CTGATAAA CCTGCTGTGC chr2R:12926332-12926452 12 2.99e-04 TGCATCTTGG CTGATAAA CCCCTAGGTT chr2R:17697583-17697703 76 2.99e-04 TAATGGTCTA GTGATAAA GCGGAATTCT chr3L:4293813-4293933 89 2.99e-04 TTTCATCACA CTGATAAA GTTTGCATTA chr2L:8009962-8010082 41 3.78e-04 AATCAGCTGA ACGATAAG CCCAATGTTT chr2R:17598588-17598708 71 3.78e-04 GCCGACTAAG ACGATAAG CAAAAACGAT chr3L:7759974-7760094 62 3.78e-04 CGAGTCTTAG CTGATAAT ATTTCCAAAA chr2R:21156434-21156554 48 3.78e-04 CCTCAAAAAT CTGATAAT CATCAAGTTG chrX:21353686-21353806 76 3.78e-04 TTTATTTTTG CTGATAAT TTGCGTGGCG chr3R:10700790-10700910 87 3.78e-04 CCTAACCCCG ACGATAAG AAATGATTTT chr2L:10456052-10456172 54 4.12e-04 GGCACTTGAG GCGATAAA CCTTGTACTG chr2L:16448165-16448285 89 4.12e-04 CGCTCGCAAA GCGATAAA AAGCAGAAGT chr3L:21400369-21400489 86 4.12e-04 AGCATCGTCT GCGATAAA CATTTAAGAT chr2R:22116398-22116518 75 4.71e-04 AGTGAACACA TTGATAAA AATATATTCG chr3L:10094876-10094996 2 4.71e-04 A GCGATAAT AGCGGGGGTT chr2L:3445784-3445904 50 4.71e-04 ATATCGATTT GCGATAAT CGCCTTGAAC chr2L:2362328-2362448 72 4.95e-04 TACCGCGCAA TTGATAAT TCACACACTT chr3R:25899849-25899969 35 4.95e-04 TCAAAATGTA TTGATAAT CAAAATGGAG chr2R:19324888-19325008 106 5.49e-04 TCATTGTTAC TCGATAAA TCTCGCA chr2L:311050-311170 87 5.49e-04 GAGAACGGGG CAGATAAC GCTTCACTGG chr3L:6916317-6916437 61 5.49e-04 CTTTAACAAA GAGATAAC CCATATATAG chr3L:18826086-18826206 41 5.49e-04 CCCCCGTGTA GAGATAAC GCTCTGCAAT chr2L:18955799-18955919 2 6.06e-04 G CTGATTAG GAAGCCATCT chr2R:7712484-7712604 104 6.06e-04 TAGTTGGCTT GTGATTAG CAGGTAATG chr2R:8459916-8460036 105 6.76e-04 AAGTTAATTA GCGATTAG CAATTAGT chr3L:12078059-12078179 15 6.76e-04 AATGCGGTCT GCGATTAG AGATGGTTTA chr2R:24297610-24297730 2 6.76e-04 G TAGATAAC AAACCACCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8940858-8940978 3.5e-05 54_[+1]_58 chr3L:19648799-19648919 3.5e-05 60_[+1]_52 chr2R:15560331-15560451 3.5e-05 42_[+1]_70 chr2L:451863-451983 3.5e-05 73_[+1]_39 chr2L:13779288-13779408 3.5e-05 76_[+1]_36 chrX:3430031-3430151 3.5e-05 59_[+1]_53 chr2L:9691366-9691486 3.5e-05 56_[+1]_56 chr3R:15339252-15339372 3.5e-05 70_[+1]_42 chrX:6355269-6355389 3.5e-05 5_[+1]_107 chr3L:2504364-2504484 3.5e-05 66_[+1]_46 chr3R:25347011-25347131 3.5e-05 64_[+1]_48 chrX:23072184-23072304 3.5e-05 2_[+1]_110 chrX:15113755-15113875 3.5e-05 23_[+1]_89 chr3L:22737906-22738026 3.5e-05 34_[+1]_78 chr3R:9049721-9049841 3.5e-05 75_[+1]_37 chr3L:14779429-14779549 3.5e-05 86_[+1]_26 chrX:2197943-2198063 3.5e-05 75_[+1]_37 chr3R:5571904-5572024 3.5e-05 107_[+1]_5 chr3R:10251974-10252094 3.5e-05 87_[+1]_25 chr3R:5497702-5497822 6.4e-05 50_[+1]_62 chr2R:12952590-12952710 6.4e-05 100_[+1]_12 chrX:7316236-7316356 6.4e-05 82_[+1]_30 chr2R:17750564-17750684 6.4e-05 57_[+1]_55 chr2R:24684238-24684358 6.4e-05 100_[+1]_12 chr3L:162357-162477 6.4e-05 11_[+1]_101 chr2L:20883017-20883137 6.4e-05 81_[+1]_31 chr2L:6006887-6007007 6.4e-05 33_[+1]_79 chr2R:17694519-17694639 6.4e-05 43_[+1]_69 chr3L:8097268-8097388 6.4e-05 95_[+1]_17 chr3L:22458292-22458412 6.4e-05 88_[+1]_24 chr3R:19100227-19100347 6.4e-05 12_[+1]_100 chrX:930519-930639 6.4e-05 92_[+1]_20 chr2L:7435649-7435769 6.4e-05 98_[+1]_14 chr3R:18449313-18449433 6.4e-05 17_[+1]_95 chr3R:24016442-24016562 8.5e-05 28_[+1]_84 chr3L:16137287-16137407 8.5e-05 87_[+1]_25 chr2L:19421773-19421893 8.5e-05 87_[+1]_25 chr2L:6255597-6255717 8.5e-05 71_[+1]_41 chr3R:7058170-7058290 8.5e-05 82_[+1]_30 chr3R:12404732-12404852 8.5e-05 94_[+1]_18 chrX:2175537-2175657 8.5e-05 80_[+1]_32 chr2L:18781603-18781723 8.5e-05 77_[+1]_35 chr2R:15215631-15215751 8.5e-05 42_[+1]_70 chr3L:12827842-12827962 8.5e-05 40_[+1]_72 chr2L:5285999-5286119 8.5e-05 22_[+1]_90 chr3R:21082638-21082758 0.0001 61_[+1]_51 chr3R:15231866-15231986 0.0001 36_[+1]_76 chr2R:11734446-11734566 0.0001 101_[+1]_11 chrX:6062295-6062415 0.0001 91_[+1]_21 chr2L:4950871-4950991 0.0001 1_[+1]_111 chr2R:16009135-16009255 0.00014 107_[+1]_5 chr3R:16200759-16200879 0.00014 78_[+1]_34 chr3L:4550290-4550410 0.00014 40_[+1]_72 chr3L:217617-217737 0.00014 98_[+1]_14 chr3L:2254147-2254267 0.00014 82_[+1]_30 chr2R:22591144-22591264 0.00014 78_[+1]_34 chr3R:25300687-25300807 0.00014 87_[+1]_25 chr3R:16446958-16447078 0.00017 51_[+1]_61 chrX:598514-598634 0.00017 52_[+1]_60 chrX:20697717-20697837 0.00017 27_[+1]_85 chrX:7303963-7304083 0.00017 69_[+1]_43 chr3L:3236459-3236579 0.00017 94_[+1]_18 chr3R:20823874-20823994 0.0002 3_[+1]_109 chr3R:10884742-10884862 0.0002 21_[+1]_91 chr2L:13881622-13881742 0.0002 94_[+1]_18 chr2R:24140259-24140379 0.0002 78_[+1]_34 chrX:16746066-16746186 0.0002 82_[+1]_30 chr3R:10870771-10870891 0.0002 53_[+1]_59 chrX:492815-492935 0.00022 36_[+1]_76 chr3R:5610940-5611060 0.00022 59_[+1]_53 chr3L:21839856-21839976 0.00022 73_[+1]_39 chr2L:8220424-8220544 0.00024 66_[+1]_46 chr3R:11683803-11683923 0.00024 16_[+1]_96 chr2R:17756469-17756589 0.0003 26_[+1]_86 chr2R:12926332-12926452 0.0003 11_[+1]_101 chr2R:17697583-17697703 0.0003 75_[+1]_37 chr3L:4293813-4293933 0.0003 88_[+1]_24 chr2L:8009962-8010082 0.00038 40_[+1]_72 chr2R:17598588-17598708 0.00038 70_[+1]_42 chr3L:7759974-7760094 0.00038 61_[+1]_51 chr2R:21156434-21156554 0.00038 47_[+1]_65 chrX:21353686-21353806 0.00038 75_[+1]_37 chr3R:10700790-10700910 0.00038 86_[+1]_26 chr2L:10456052-10456172 0.00041 53_[+1]_59 chr2L:16448165-16448285 0.00041 88_[+1]_24 chr3L:21400369-21400489 0.00041 85_[+1]_27 chr2R:22116398-22116518 0.00047 74_[+1]_38 chr3L:10094876-10094996 0.00047 1_[+1]_111 chr2L:3445784-3445904 0.00047 49_[+1]_63 chr2L:2362328-2362448 0.0005 71_[+1]_41 chr3R:25899849-25899969 0.0005 34_[+1]_78 chr2R:19324888-19325008 0.00055 105_[+1]_7 chr2L:311050-311170 0.00055 86_[+1]_26 chr3L:6916317-6916437 0.00055 60_[+1]_52 chr3L:18826086-18826206 0.00055 40_[+1]_72 chr2L:18955799-18955919 0.00061 1_[+1]_111 chr2R:7712484-7712604 0.00061 103_[+1]_9 chr2R:8459916-8460036 0.00068 104_[+1]_8 chr3L:12078059-12078179 0.00068 14_[+1]_98 chr2R:24297610-24297730 0.00068 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYGATAAG width=8 seqs=100 chr2L:8940858-8940978 ( 55) CTGATAAG 1 chr3L:19648799-19648919 ( 61) CTGATAAG 1 chr2R:15560331-15560451 ( 43) GTGATAAG 1 chr2L:451863-451983 ( 74) CTGATAAG 1 chr2L:13779288-13779408 ( 77) CTGATAAG 1 chrX:3430031-3430151 ( 60) GTGATAAG 1 chr2L:9691366-9691486 ( 57) CTGATAAG 1 chr3R:15339252-15339372 ( 71) GTGATAAG 1 chrX:6355269-6355389 ( 6) CTGATAAG 1 chr3L:2504364-2504484 ( 67) CTGATAAG 1 chr3R:25347011-25347131 ( 65) CTGATAAG 1 chrX:23072184-23072304 ( 3) CTGATAAG 1 chrX:15113755-15113875 ( 24) GTGATAAG 1 chr3L:22737906-22738026 ( 35) CTGATAAG 1 chr3R:9049721-9049841 ( 76) CTGATAAG 1 chr3L:14779429-14779549 ( 87) CTGATAAG 1 chrX:2197943-2198063 ( 76) CTGATAAG 1 chr3R:5571904-5572024 ( 108) CTGATAAG 1 chr3R:10251974-10252094 ( 88) GTGATAAG 1 chr3R:5497702-5497822 ( 51) GCGATAAG 1 chr2R:12952590-12952710 ( 101) GCGATAAG 1 chrX:7316236-7316356 ( 83) GCGATAAG 1 chr2R:17750564-17750684 ( 58) GCGATAAG 1 chr2R:24684238-24684358 ( 101) GCGATAAG 1 chr3L:162357-162477 ( 12) CCGATAAG 1 chr2L:20883017-20883137 ( 82) CCGATAAG 1 chr2L:6006887-6007007 ( 34) CCGATAAG 1 chr2R:17694519-17694639 ( 44) GCGATAAG 1 chr3L:8097268-8097388 ( 96) CCGATAAG 1 chr3L:22458292-22458412 ( 89) CCGATAAG 1 chr3R:19100227-19100347 ( 13) GCGATAAG 1 chrX:930519-930639 ( 93) GCGATAAG 1 chr2L:7435649-7435769 ( 99) GCGATAAG 1 chr3R:18449313-18449433 ( 18) GCGATAAG 1 chr3R:24016442-24016562 ( 29) TTGATAAG 1 chr3L:16137287-16137407 ( 88) TTGATAAG 1 chr2L:19421773-19421893 ( 88) TTGATAAG 1 chr2L:6255597-6255717 ( 72) TTGATAAG 1 chr3R:7058170-7058290 ( 83) TTGATAAG 1 chr3R:12404732-12404852 ( 95) TTGATAAG 1 chrX:2175537-2175657 ( 81) TTGATAAG 1 chr2L:18781603-18781723 ( 78) TTGATAAG 1 chr2R:15215631-15215751 ( 43) TTGATAAG 1 chr3L:12827842-12827962 ( 41) TTGATAAG 1 chr2L:5285999-5286119 ( 23) TTGATAAG 1 chr3R:21082638-21082758 ( 62) TCGATAAG 1 chr3R:15231866-15231986 ( 37) TCGATAAG 1 chr2R:11734446-11734566 ( 102) TCGATAAG 1 chrX:6062295-6062415 ( 92) TCGATAAG 1 chr2L:4950871-4950991 ( 2) TCGATAAG 1 chr2R:16009135-16009255 ( 108) CTGATAAC 1 chr3R:16200759-16200879 ( 79) GTGATAAC 1 chr3L:4550290-4550410 ( 41) GTGATAAC 1 chr3L:217617-217737 ( 99) GTGATAAC 1 chr3L:2254147-2254267 ( 83) CTGATAAC 1 chr2R:22591144-22591264 ( 79) CTGATAAC 1 chr3R:25300687-25300807 ( 88) CTGATAAC 1 chr3R:16446958-16447078 ( 52) GCGATAAC 1 chrX:598514-598634 ( 53) CCGATAAC 1 chrX:20697717-20697837 ( 28) GCGATAAC 1 chrX:7303963-7304083 ( 70) CCGATAAC 1 chr3L:3236459-3236579 ( 95) GCGATAAC 1 chr3R:20823874-20823994 ( 4) CAGATAAG 1 chr3R:10884742-10884862 ( 22) GAGATAAG 1 chr2L:13881622-13881742 ( 95) GAGATAAG 1 chr2R:24140259-24140379 ( 79) CAGATAAG 1 chrX:16746066-16746186 ( 83) GAGATAAG 1 chr3R:10870771-10870891 ( 54) CAGATAAG 1 chrX:492815-492935 ( 37) TTGATAAC 1 chr3R:5610940-5611060 ( 60) TTGATAAC 1 chr3L:21839856-21839976 ( 74) TTGATAAC 1 chr2L:8220424-8220544 ( 67) ATGATAAG 1 chr3R:11683803-11683923 ( 17) ATGATAAG 1 chr2R:17756469-17756589 ( 27) CTGATAAA 1 chr2R:12926332-12926452 ( 12) CTGATAAA 1 chr2R:17697583-17697703 ( 76) GTGATAAA 1 chr3L:4293813-4293933 ( 89) CTGATAAA 1 chr2L:8009962-8010082 ( 41) ACGATAAG 1 chr2R:17598588-17598708 ( 71) ACGATAAG 1 chr3L:7759974-7760094 ( 62) CTGATAAT 1 chr2R:21156434-21156554 ( 48) CTGATAAT 1 chrX:21353686-21353806 ( 76) CTGATAAT 1 chr3R:10700790-10700910 ( 87) ACGATAAG 1 chr2L:10456052-10456172 ( 54) GCGATAAA 1 chr2L:16448165-16448285 ( 89) GCGATAAA 1 chr3L:21400369-21400489 ( 86) GCGATAAA 1 chr2R:22116398-22116518 ( 75) TTGATAAA 1 chr3L:10094876-10094996 ( 2) GCGATAAT 1 chr2L:3445784-3445904 ( 50) GCGATAAT 1 chr2L:2362328-2362448 ( 72) TTGATAAT 1 chr3R:25899849-25899969 ( 35) TTGATAAT 1 chr2R:19324888-19325008 ( 106) TCGATAAA 1 chr2L:311050-311170 ( 87) CAGATAAC 1 chr3L:6916317-6916437 ( 61) GAGATAAC 1 chr3L:18826086-18826206 ( 41) GAGATAAC 1 chr2L:18955799-18955919 ( 2) CTGATTAG 1 chr2R:7712484-7712604 ( 104) GTGATTAG 1 chr2R:8459916-8460036 ( 105) GCGATTAG 1 chr3L:12078059-12078179 ( 15) GCGATTAG 1 chr2R:24297610-24297730 ( 2) TAGATAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.62852 E= 1.2e-033 -242 65 60 -19 -142 65 -1329 98 -1329 -1329 212 -1329 190 -1329 -1329 -1329 -1329 -1329 -1329 187 184 -1329 -1329 -277 190 -1329 -1329 -1329 -157 -27 150 -196 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 1.2e-033 0.050000 0.360000 0.350000 0.240000 0.100000 0.360000 0.000000 0.540000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.960000 0.000000 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 0.090000 0.190000 0.650000 0.070000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][TC]GATAAG -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF SCTGGGGG MEME-2 width = 8 sites = 91 llr = 684 E-value = 1.5e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 212::::: pos.-specific C 47:::::: probability G 4:29a8aa matrix T 1261:2:: bits 2.1 * ** 1.9 * ** 1.7 * ** 1.5 ** ** Relative 1.3 ***** Entropy 1.1 ***** (10.8 bits) 0.9 * ***** 0.6 * ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGGGGG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10529097-10529217 38 9.25e-06 TTCAGTTGCC GCTGGGGG CCGGCGGCTT chr3L:17922580-17922700 77 9.25e-06 AGTGGGCGCT GCTGGGGG TGGTGGCGTG chr2R:6645830-6645950 55 9.25e-06 AAAAGTCATT GCTGGGGG TGGTGCACAT chrX:20697717-20697837 54 9.25e-06 GTGGTTCTTA GCTGGGGG GGAAATCCAA chr2L:8994155-8994275 86 9.25e-06 TCTTGTCCAC GCTGGGGG TCTTATCGTT chr3R:21869786-21869906 43 9.25e-06 AAGTGGTCTG GCTGGGGG GCTTTTGTTG chr3R:12370384-12370504 55 9.25e-06 GCTACACTTC GCTGGGGG TATTTAATTT chr3R:30599542-30599662 49 9.25e-06 ATTTATGTTA GCTGGGGG TAGGCACTAG chr3R:22520601-22520721 87 9.25e-06 ACGCGATGTT GCTGGGGG TCGCATAAAA chr2L:136381-136501 62 9.25e-06 AATAATCGTT GCTGGGGG TGCTGTTTAT chrX:2197943-2198063 5 9.25e-06 GATC GCTGGGGG TCCAAATGGC chr3L:21281845-21281965 82 9.25e-06 ATTAATCGTT GCTGGGGG CCGATTTATT chr3R:21082638-21082758 79 1.85e-05 GAAGCCATGG CCTGGGGG GCTTATGGTC chr3L:3415504-3415624 25 1.85e-05 GAGCCTAATA CCTGGGGG TCTTCGTCTT chr3L:9846120-9846240 31 1.85e-05 TGCTCCGCCA CCTGGGGG ACACAACAAA chr3L:3054239-3054359 5 1.85e-05 GTGG CCTGGGGG TATGTTTTTT chr3L:6913931-6914051 90 2.76e-05 TAGAAGATCA GCAGGGGG TGTATCTGAA chr3R:28325101-28325221 33 2.76e-05 AAACAACTCC GCAGGGGG tagataatat chrX:15451087-15451207 50 2.76e-05 TCGTTTAACA GCAGGGGG GCAAGTTCAA chr2R:15557553-15557673 36 2.76e-05 AAGCTTTTCG GCAGGGGG CCAATCCCCA chr3R:20954644-20954764 67 3.54e-05 CATGCGGGTG GCGGGGGG CACACATTTT chrX:492815-492935 60 3.54e-05 TGGTAGGCGC GCGGGGGG CAGCCGCCCA chr3R:25238886-25239006 32 3.54e-05 TTCTGCTTCT GCGGGGGG CCATTGTTAG chrX:18857537-18857657 52 5.52e-05 AGGATCTCCT CCAGGGGG TGGCAGTGGG chr2L:306561-306681 39 5.52e-05 CTATTGACTC CCAGGGGG GTGGCGGGGT chr2R:21156434-21156554 66 5.52e-05 CATCAAGTTG ACTGGGGG GCAGTTCGCA chr2L:5211069-5211189 55 5.52e-05 GTTTATTTTC ACTGGGGG CCCTGATACC chr3L:21839856-21839976 45 5.52e-05 TTGGCAATTC ACTGGGGG TCCGCGTCAA chrX:16281855-16281975 47 6.29e-05 GCCCTCGACT CCGGGGGG GAAAATAATA chr3R:25300687-25300807 43 6.29e-05 AATTTGGTTA CCGGGGGG CATATGGTGC chr3L:12078059-12078179 34 8.50e-05 GATGGTTTAC GTTGGGGG TTTACTTCGA chr3R:8642389-8642509 52 8.50e-05 GGGGGGCTTA GTTGGGGG GATTCATTTG chr3R:12404732-12404852 34 8.50e-05 CATCATCGCT GCTGGTGG CAAACACATT chrX:13636881-13637001 33 8.50e-05 CGCCTTCATT GTTGGGGG TACGGCATTG chr3R:11684479-11684599 71 8.50e-05 GTAACTAGCA GCTGGTGG TCTTTATCAG chr2L:13842741-13842861 59 1.07e-04 TTTTCCCTGC CCTGGTGG GCAGTGAAAT chr2L:6006887-6007007 25 1.07e-04 ACGCGCCTTT CCTGGTGG CCCGATAAGG chr3L:22458292-22458412 8 1.07e-04 AGTTTCG CTTGGGGG TATTGATTGA chr3R:22024918-22025038 86 1.07e-04 ACAATGGTTC CTTGGGGG TCGGCTTGTT chr3R:19100227-19100347 81 1.07e-04 GTCTGGGTCT CTTGGGGG TCTGGCCCCA chr2L:7795245-7795365 60 1.07e-04 TGATGCAGCA CTTGGGGG GCGTGTGTGC chr3R:5571904-5572024 47 1.07e-04 ATTCATACCC CCTGGTGG TGGTGGTGGA chr2L:2372269-2372389 91 1.28e-04 AAAAAATACA ACAGGGGG TCCAACTTTT chr3R:29788286-29788406 33 1.28e-04 TCTTGGCGAG ACAGGGGG Tctgaactga chrX:16706887-16707007 30 1.28e-04 GCACACCCGT ACAGGGGG TATGGCATGG chr3R:15339252-15339372 86 1.28e-04 AAGACCACCC GATGGGGG CATTCCCCAC chr2L:9619055-9619175 53 1.28e-04 AACTAGGGGT ACAGGGGG TCTATGGGTA chr3R:9049721-9049841 52 1.28e-04 AATTTGCTCC ACAGGGGG CCACCAACGT chr3R:23226271-23226391 31 1.48e-04 ACTCATTTCC ACGGGGGG TATGGTGGCG chr2R:19332473-19332593 59 1.48e-04 CATCCACTGC TCTGGGGG GGCTGGCTAT chr3R:27253955-27254075 41 1.70e-04 TTCAAACTCC CATGGGGG GTTATATTTA chr3L:19648799-19648919 82 1.70e-04 CCGTCCACTT CATGGGGG GTTATCACTG chr2R:17694519-17694639 33 1.70e-04 GTGATACGCT GCTTGGGG TGAGCGATAA chr3L:2504364-2504484 102 1.70e-04 CTTATCACTT CATGGGGG GGCACATATT chr3R:11666427-11666547 94 1.70e-04 TAATTGCTGA CATGGGGG TAGGCCTATC chr3L:20431758-20431878 43 1.70e-04 CAAAGGTCAC CATGGGGG GTCCCTCACC chr3R:12365993-12366113 55 2.03e-04 TAAAATCACG GCAGGTGG CATTTCAGCA chr3L:1119484-1119604 64 2.21e-04 AAATCAAACG GCGGGTGG TGCCAGCTAG chr3R:21758855-21758975 98 2.21e-04 GCATTACCTT GCGGGTGG TCGGAACTTT chr3R:7535745-7535865 64 2.21e-04 CGTACAATTC GCGGGTGG CCTCTCCTAC chr2L:4950871-4950991 57 2.68e-04 CAAAGAAACT CTAGGGGG GACTAGACCC chr3R:12372967-12373087 57 2.68e-04 GGCAGAAGCT CTAGGGGG TCCCAGGCAG chrX:6062295-6062415 22 2.98e-04 GCTAGCATTT GAAGGGGG GGAGGCTCCA chrX:509261-509381 98 3.17e-04 TCAAGCTTTA TCAGGGGG TCCAGAACCC chr3L:8097268-8097388 67 3.17e-04 TATTTATTGA TCAGGGGG GTACTTGAAT chr2R:22116398-22116518 52 3.61e-04 ATGAGAGATA TCGGGGGG AGCGAAGTGA chr2L:9691366-9691486 69 3.61e-04 GATAAGCCCT CAAGGGGG CAGCACTCGT chr3R:25899849-25899969 68 3.61e-04 ACCCCCATCA AATGGGGG CGTTGTTTTG chr2R:17120326-17120446 99 3.61e-04 GTTTTTTCAC GCATGGGG TCTGACTGGC chr2R:17750564-17750684 34 3.87e-04 CACCTTATCT GCGTGGGG TAGCCCAGGT chr3L:8059920-8060040 66 3.87e-04 CTGCCCGACA GCCGGGGG CAATCGTTAA chrX:3430031-3430151 52 3.87e-04 ACTTCTGATC GCCGGGGG GTGATAAGTC chr3L:16652753-16652873 77 4.23e-04 TGTGTAGTTG GTTGGTGG GCAAACCAAA chr2R:7953795-7953915 35 4.23e-04 ATTCAGCATA ACTTGGGG CGCGGAGTGT chr3R:31435787-31435907 88 4.23e-04 GTGGCCTTTC GTTGGTGG TGCAAGTGAT chr3R:30779425-30779545 50 4.23e-04 CAATGGCCCG ACTTGGGG TTTCATTCAT chr2L:21299649-21299769 68 4.23e-04 TCACGGCAAT CCATGGGG TCCAAGCTGT chr3R:30105329-30105449 62 4.40e-04 GTATGTGGAA CCGTGGGG GATCGTTTAT chr2L:107187-107307 17 4.40e-04 TTCTTAGGCC CCGTGGGG TCACACCTTA chr2R:18815220-18815340 17 4.40e-04 CGTGGACAGC CCGTGGGG TGGGCGTTGT chr2L:21367464-21367584 79 4.53e-04 TTGTTGACTG CTTGGTGG TTTCTAACGC chr2R:12952590-12952710 13 4.91e-04 TGCCCTCTCA ACAGGTGG AACCCCAATT chrX:2175537-2175657 95 4.91e-04 TAAGGCCCAC ACAGGTGG GCGGTTGCGG chr2L:2362328-2362448 90 5.39e-04 TCACACACTT TCTGGTGG AAAATATTTC chr2R:15560331-15560451 90 5.39e-04 AATCAGTAAC TTTGGGGG GTCAGTCTTT chr3L:4550290-4550410 54 5.78e-04 ATAACACACC CATGGTGG CCACACTTTT chr3R:27705776-27705896 63 5.78e-04 TAGCCCGGTC CATGGTGG TTTAGCTGCG chr2L:19421773-19421893 78 6.40e-04 CTTTTGGGGC CTTTGGGG TCTTGATAAG chr2L:10146043-10146163 66 6.40e-04 CGTTGGCATT CTTTGGGG CATTTGCCTT chr2L:6255597-6255717 97 7.22e-04 cgtcgggtca gtgggtgg ttgggcggtg chr3R:25314901-25315021 69 7.22e-04 AGGAACCCCA ACGTGGGG GTTTTTGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10529097-10529217 9.3e-06 37_[+2]_75 chr3L:17922580-17922700 9.3e-06 76_[+2]_36 chr2R:6645830-6645950 9.3e-06 54_[+2]_58 chrX:20697717-20697837 9.3e-06 53_[+2]_59 chr2L:8994155-8994275 9.3e-06 85_[+2]_27 chr3R:21869786-21869906 9.3e-06 42_[+2]_70 chr3R:12370384-12370504 9.3e-06 54_[+2]_58 chr3R:30599542-30599662 9.3e-06 48_[+2]_64 chr3R:22520601-22520721 9.3e-06 86_[+2]_26 chr2L:136381-136501 9.3e-06 61_[+2]_51 chrX:2197943-2198063 9.3e-06 4_[+2]_108 chr3L:21281845-21281965 9.3e-06 81_[+2]_31 chr3R:21082638-21082758 1.8e-05 78_[+2]_34 chr3L:3415504-3415624 1.8e-05 24_[+2]_88 chr3L:9846120-9846240 1.8e-05 30_[+2]_82 chr3L:3054239-3054359 1.8e-05 4_[+2]_108 chr3L:6913931-6914051 2.8e-05 89_[+2]_23 chr3R:28325101-28325221 2.8e-05 32_[+2]_80 chrX:15451087-15451207 2.8e-05 49_[+2]_63 chr2R:15557553-15557673 2.8e-05 35_[+2]_77 chr3R:20954644-20954764 3.5e-05 66_[+2]_46 chrX:492815-492935 3.5e-05 59_[+2]_53 chr3R:25238886-25239006 3.5e-05 31_[+2]_81 chrX:18857537-18857657 5.5e-05 51_[+2]_61 chr2L:306561-306681 5.5e-05 38_[+2]_74 chr2R:21156434-21156554 5.5e-05 65_[+2]_47 chr2L:5211069-5211189 5.5e-05 54_[+2]_58 chr3L:21839856-21839976 5.5e-05 44_[+2]_68 chrX:16281855-16281975 6.3e-05 46_[+2]_66 chr3R:25300687-25300807 6.3e-05 42_[+2]_70 chr3L:12078059-12078179 8.5e-05 33_[+2]_79 chr3R:8642389-8642509 8.5e-05 51_[+2]_61 chr3R:12404732-12404852 8.5e-05 33_[+2]_79 chrX:13636881-13637001 8.5e-05 32_[+2]_80 chr3R:11684479-11684599 8.5e-05 70_[+2]_42 chr2L:13842741-13842861 0.00011 58_[+2]_54 chr2L:6006887-6007007 0.00011 24_[+2]_88 chr3L:22458292-22458412 0.00011 7_[+2]_105 chr3R:22024918-22025038 0.00011 85_[+2]_27 chr3R:19100227-19100347 0.00011 80_[+2]_32 chr2L:7795245-7795365 0.00011 59_[+2]_53 chr3R:5571904-5572024 0.00011 46_[+2]_66 chr2L:2372269-2372389 0.00013 90_[+2]_22 chr3R:29788286-29788406 0.00013 32_[+2]_80 chrX:16706887-16707007 0.00013 29_[+2]_83 chr3R:15339252-15339372 0.00013 85_[+2]_27 chr2L:9619055-9619175 0.00013 52_[+2]_60 chr3R:9049721-9049841 0.00013 51_[+2]_61 chr3R:23226271-23226391 0.00015 30_[+2]_82 chr2R:19332473-19332593 0.00015 58_[+2]_54 chr3R:27253955-27254075 0.00017 40_[+2]_72 chr3L:19648799-19648919 0.00017 81_[+2]_31 chr2R:17694519-17694639 0.00017 32_[+2]_80 chr3L:2504364-2504484 0.00017 101_[+2]_11 chr3R:11666427-11666547 0.00017 93_[+2]_19 chr3L:20431758-20431878 0.00017 42_[+2]_70 chr3R:12365993-12366113 0.0002 54_[+2]_58 chr3L:1119484-1119604 0.00022 63_[+2]_49 chr3R:21758855-21758975 0.00022 97_[+2]_15 chr3R:7535745-7535865 0.00022 63_[+2]_49 chr2L:4950871-4950991 0.00027 56_[+2]_56 chr3R:12372967-12373087 0.00027 56_[+2]_56 chrX:6062295-6062415 0.0003 21_[+2]_91 chrX:509261-509381 0.00032 97_[+2]_15 chr3L:8097268-8097388 0.00032 66_[+2]_46 chr2R:22116398-22116518 0.00036 51_[+2]_61 chr2L:9691366-9691486 0.00036 68_[+2]_44 chr3R:25899849-25899969 0.00036 67_[+2]_45 chr2R:17120326-17120446 0.00036 98_[+2]_14 chr2R:17750564-17750684 0.00039 33_[+2]_79 chr3L:8059920-8060040 0.00039 65_[+2]_47 chrX:3430031-3430151 0.00039 51_[+2]_61 chr3L:16652753-16652873 0.00042 76_[+2]_36 chr2R:7953795-7953915 0.00042 34_[+2]_78 chr3R:31435787-31435907 0.00042 87_[+2]_25 chr3R:30779425-30779545 0.00042 49_[+2]_63 chr2L:21299649-21299769 0.00042 67_[+2]_45 chr3R:30105329-30105449 0.00044 61_[+2]_51 chr2L:107187-107307 0.00044 16_[+2]_96 chr2R:18815220-18815340 0.00044 16_[+2]_96 chr2L:21367464-21367584 0.00045 78_[+2]_34 chr2R:12952590-12952710 0.00049 12_[+2]_100 chrX:2175537-2175657 0.00049 94_[+2]_18 chr2L:2362328-2362448 0.00054 89_[+2]_23 chr2R:15560331-15560451 0.00054 89_[+2]_23 chr3L:4550290-4550410 0.00058 53_[+2]_59 chr3R:27705776-27705896 0.00058 62_[+2]_50 chr2L:19421773-19421893 0.00064 77_[+2]_35 chr2L:10146043-10146163 0.00064 65_[+2]_47 chr2L:6255597-6255717 0.00072 96_[+2]_16 chr3R:25314901-25315021 0.00072 68_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCTGGGGG width=8 seqs=91 chr2L:10529097-10529217 ( 38) GCTGGGGG 1 chr3L:17922580-17922700 ( 77) GCTGGGGG 1 chr2R:6645830-6645950 ( 55) GCTGGGGG 1 chrX:20697717-20697837 ( 54) GCTGGGGG 1 chr2L:8994155-8994275 ( 86) GCTGGGGG 1 chr3R:21869786-21869906 ( 43) GCTGGGGG 1 chr3R:12370384-12370504 ( 55) GCTGGGGG 1 chr3R:30599542-30599662 ( 49) GCTGGGGG 1 chr3R:22520601-22520721 ( 87) GCTGGGGG 1 chr2L:136381-136501 ( 62) GCTGGGGG 1 chrX:2197943-2198063 ( 5) GCTGGGGG 1 chr3L:21281845-21281965 ( 82) GCTGGGGG 1 chr3R:21082638-21082758 ( 79) CCTGGGGG 1 chr3L:3415504-3415624 ( 25) CCTGGGGG 1 chr3L:9846120-9846240 ( 31) CCTGGGGG 1 chr3L:3054239-3054359 ( 5) CCTGGGGG 1 chr3L:6913931-6914051 ( 90) GCAGGGGG 1 chr3R:28325101-28325221 ( 33) GCAGGGGG 1 chrX:15451087-15451207 ( 50) GCAGGGGG 1 chr2R:15557553-15557673 ( 36) GCAGGGGG 1 chr3R:20954644-20954764 ( 67) GCGGGGGG 1 chrX:492815-492935 ( 60) GCGGGGGG 1 chr3R:25238886-25239006 ( 32) GCGGGGGG 1 chrX:18857537-18857657 ( 52) CCAGGGGG 1 chr2L:306561-306681 ( 39) CCAGGGGG 1 chr2R:21156434-21156554 ( 66) ACTGGGGG 1 chr2L:5211069-5211189 ( 55) ACTGGGGG 1 chr3L:21839856-21839976 ( 45) ACTGGGGG 1 chrX:16281855-16281975 ( 47) CCGGGGGG 1 chr3R:25300687-25300807 ( 43) CCGGGGGG 1 chr3L:12078059-12078179 ( 34) GTTGGGGG 1 chr3R:8642389-8642509 ( 52) GTTGGGGG 1 chr3R:12404732-12404852 ( 34) GCTGGTGG 1 chrX:13636881-13637001 ( 33) GTTGGGGG 1 chr3R:11684479-11684599 ( 71) GCTGGTGG 1 chr2L:13842741-13842861 ( 59) CCTGGTGG 1 chr2L:6006887-6007007 ( 25) CCTGGTGG 1 chr3L:22458292-22458412 ( 8) CTTGGGGG 1 chr3R:22024918-22025038 ( 86) CTTGGGGG 1 chr3R:19100227-19100347 ( 81) CTTGGGGG 1 chr2L:7795245-7795365 ( 60) CTTGGGGG 1 chr3R:5571904-5572024 ( 47) CCTGGTGG 1 chr2L:2372269-2372389 ( 91) ACAGGGGG 1 chr3R:29788286-29788406 ( 33) ACAGGGGG 1 chrX:16706887-16707007 ( 30) ACAGGGGG 1 chr3R:15339252-15339372 ( 86) GATGGGGG 1 chr2L:9619055-9619175 ( 53) ACAGGGGG 1 chr3R:9049721-9049841 ( 52) ACAGGGGG 1 chr3R:23226271-23226391 ( 31) ACGGGGGG 1 chr2R:19332473-19332593 ( 59) TCTGGGGG 1 chr3R:27253955-27254075 ( 41) CATGGGGG 1 chr3L:19648799-19648919 ( 82) CATGGGGG 1 chr2R:17694519-17694639 ( 33) GCTTGGGG 1 chr3L:2504364-2504484 ( 102) CATGGGGG 1 chr3R:11666427-11666547 ( 94) CATGGGGG 1 chr3L:20431758-20431878 ( 43) CATGGGGG 1 chr3R:12365993-12366113 ( 55) GCAGGTGG 1 chr3L:1119484-1119604 ( 64) GCGGGTGG 1 chr3R:21758855-21758975 ( 98) GCGGGTGG 1 chr3R:7535745-7535865 ( 64) GCGGGTGG 1 chr2L:4950871-4950991 ( 57) CTAGGGGG 1 chr3R:12372967-12373087 ( 57) CTAGGGGG 1 chrX:6062295-6062415 ( 22) GAAGGGGG 1 chrX:509261-509381 ( 98) TCAGGGGG 1 chr3L:8097268-8097388 ( 67) TCAGGGGG 1 chr2R:22116398-22116518 ( 52) TCGGGGGG 1 chr2L:9691366-9691486 ( 69) CAAGGGGG 1 chr3R:25899849-25899969 ( 68) AATGGGGG 1 chr2R:17120326-17120446 ( 99) GCATGGGG 1 chr2R:17750564-17750684 ( 34) GCGTGGGG 1 chr3L:8059920-8060040 ( 66) GCCGGGGG 1 chrX:3430031-3430151 ( 52) GCCGGGGG 1 chr3L:16652753-16652873 ( 77) GTTGGTGG 1 chr2R:7953795-7953915 ( 35) ACTTGGGG 1 chr3R:31435787-31435907 ( 88) GTTGGTGG 1 chr3R:30779425-30779545 ( 50) ACTTGGGG 1 chr2L:21299649-21299769 ( 68) CCATGGGG 1 chr3R:30105329-30105449 ( 62) CCGTGGGG 1 chr2L:107187-107307 ( 17) CCGTGGGG 1 chr2R:18815220-18815340 ( 17) CCGTGGGG 1 chr2L:21367464-21367584 ( 79) CTTGGTGG 1 chr2R:12952590-12952710 ( 13) ACAGGTGG 1 chrX:2175537-2175657 ( 95) ACAGGTGG 1 chr2L:2362328-2362448 ( 90) TCTGGTGG 1 chr2R:15560331-15560451 ( 90) TTTGGGGG 1 chr3L:4550290-4550410 ( 54) CATGGTGG 1 chr3R:27705776-27705896 ( 63) CATGGTGG 1 chr2L:19421773-19421893 ( 78) CTTTGGGG 1 chr2L:10146043-10146163 ( 66) CTTTGGGG 1 chr2L:6255597-6255717 ( 97) GTGGGTGG 1 chr3R:25314901-25315021 ( 69) ACGTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.83018 E= 1.5e-020 -70 62 86 -205 -115 162 -1315 -64 -15 -338 -39 104 -1315 -1315 191 -105 -1315 -1315 212 -1315 -1315 -1315 180 -47 -1315 -1315 212 -1315 -1315 -1315 212 -1315 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 1.5e-020 0.164835 0.351648 0.417582 0.065934 0.120879 0.703297 0.000000 0.175824 0.241758 0.021978 0.175824 0.560440 0.000000 0.000000 0.868132 0.131868 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.802198 0.197802 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTGGGGG MEME-2 regular expression -------------------------------------------------------------------------------- [GC]C[TA]GGGGG -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCAD MEME-3 width = 8 sites = 72 llr = 578 E-value = 2.1e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a::63 pos.-specific C 8::::a:1 probability G 2:::::24 matrix T :aa:a:22 bits 2.1 * 1.9 * *** 1.7 ***** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (11.6 bits) 0.9 ****** 0.6 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel CTTATCAG consensus G GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11273102-11273222 39 1.76e-05 TCTGGCCGCT CTTATCAG GCGGGGAGAG chr2R:24684238-24684358 63 1.76e-05 CATTGTTAGC CTTATCAG CTGTCTATAC chrX:19501386-19501506 50 1.76e-05 CATTATCAGT CTTATCAG GCCCTGTCCG chr2R:12261089-12261209 100 1.76e-05 CTCCATTTTG CTTATCAG TGGAAAATGT chr2L:8940858-8940978 12 1.76e-05 AAGAGCCCCA CTTATCAG TGTCTCCCCT chr2R:19683043-19683163 19 1.76e-05 AACTGGAACT CTTATCAG TGGCCAGCGA chr2R:24140259-24140379 96 1.76e-05 GATAGCGTTC CTTATCAG CGGCGAAGAA chrX:492815-492935 80 1.76e-05 GCCGCCCACG CTTATCAG TGTCCATCTG chr3R:31435787-31435907 65 1.76e-05 ACAGAGGCGG CTTATCAG GGAATGTGGC chr2L:20828820-20828940 79 1.76e-05 CTTCTGGCCC CTTATCAG TATAAAGATT chr3R:19100227-19100347 102 1.76e-05 GGCCCCAATC CTTATCAG TCGCCTCCGT chrX:21353686-21353806 47 1.76e-05 CCCGCAGAAG CTTATCAG TTGGCTACGT chr3L:21281845-21281965 102 1.76e-05 GATTTATTTC CTTATCAG CTCTACaaaa chr2R:6770384-6770504 31 3.82e-05 AACTCGCTTG CTTATCAA ACGCACGCCG chr3L:10094876-10094996 20 3.82e-05 AGCGGGGGTT CTTATCAA AGCGTGGTCG chr3R:30459691-30459811 30 3.82e-05 ATAGTTAAAC CTTATCAA TTGGTTATTT chr2L:5211069-5211189 73 3.82e-05 CCCTGATACC CTTATCAA TTGAAGTGCT chr2L:9619055-9619175 25 3.82e-05 TCGCCCCAAT CTTATCAA CATCTTGTAT chr2L:7972461-7972581 107 3.82e-05 TAGACCTCTT CTTATCAA TAGCCA chr3R:10700790-10700910 45 3.82e-05 CCGTCAATCG CTTATCAA CGCATTCGAC chr3L:4686755-4686875 87 7.42e-05 GATTACGGAT CTTATCGG CAAACCCACA chr2L:10529097-10529217 113 7.42e-05 GGACCCACGG CTTATCAT chr3R:6809955-6810075 99 7.42e-05 AATGCCAGAC CTTATCGG AAGAAGCGGC chr3R:27705776-27705896 24 7.42e-05 CGAAGGTGTT CTTATCAT CCTTGCTCAT chr2L:8009962-8010082 15 7.42e-05 CATAAAACCC CTTATCAT AGTTATAGAA chr2R:17697583-17697703 36 7.42e-05 ATGGAGCGCG CTTATCGG CAGACGTACC chr2L:85855-85975 96 7.42e-05 GAAGCCTCGT CTTATCAT AACAAGTGCA chr2L:3450269-3450389 36 7.42e-05 CACCCAGTTC CTTATCAT AGAAAACATA chr3R:25899849-25899969 6 7.42e-05 CTTAA CTTATCGG CCAGAGGCAC chrX:6062295-6062415 79 7.42e-05 GCGATGGCAT CTTATCGG GCAAATCGAT chr2L:7795245-7795365 27 7.42e-05 TCCATGGAGG CTTATCAT CCGAGTTTAT chr3L:4232863-4232983 87 7.42e-05 ATAGACAGCT CTTATCAT CGCTATATTT chr3L:2504364-2504484 92 9.18e-05 CATGAAAGAG CTTATCAC TTCATGGGGG chr2L:21299649-21299769 10 9.18e-05 CCCACTGCT CTTATCAC TTGTCGCAAG chr2L:16448165-16448285 14 1.10e-04 AGGTCAGTGG CTTATCTG GCCAGTTTAT chr2R:17756469-17756589 110 1.10e-04 CAGCACGTTT CTTATCTG GGT chrX:16706887-16707007 64 1.10e-04 GTATGGGTAT CTTATCTG TCAGCCGGAG chrX:930519-930639 23 1.10e-04 CCGCTCGCCT CTTATCTG CGACACCTGG chr3L:3415504-3415624 40 1.45e-04 GGGTCTTCGT CTTATCGA GTCACCTAAA chr2L:4389504-4389624 87 1.45e-04 AATGGCGAGC GTTATCAG CGAGGCTCGT chr2R:18815220-18815340 60 1.45e-04 AAAATCGAAT CTTATCGA AGTCATCTTT chr3R:8518846-8518966 86 1.45e-04 TGTCGCATAT CTTATCGA TTGACAGCAG chr3L:20431758-20431878 25 1.45e-04 AGCATGTTCG GTTATCAG CAAAGGTCAC chr2L:11942980-11943100 3 1.63e-04 GA CTTATCGT GCCGCCCATT chr2L:8994155-8994275 95 1.63e-04 CGCTGGGGGT CTTATCGT TAGCGAGTTC chr3R:11683803-11683923 48 1.63e-04 CATCTGATAG CTTATCGT CGACCTACAC chrX:5915147-5915267 105 1.63e-04 TTGCGATCCG CTTATCGT CAAGTGAT chrX:2590726-2590846 87 1.99e-04 TCTGCTCGCG CTTATCTA CGCACGGACA chr2R:7953795-7953915 13 1.99e-04 ATTTAATACC CTTATCTA AGTCATTCAG chr2L:2372269-2372389 37 1.99e-04 AATAGCTCCC CTTATCGC ACTGTTTGCT chrX:509261-509381 12 1.99e-04 CGATAGCCGC CTTATCGC CCATCCAGTG chr3R:12365993-12366113 92 1.99e-04 GTAGCAATAT CTTATCGC TATCAGAATG chr2R:10883357-10883477 109 1.99e-04 TGAGGCATCC CTTATCTA CAGT chr2R:17120326-17120446 71 1.99e-04 TGCATGGGAT CTTATCGC TCCCTAAGGG chr3R:19742982-19743102 14 2.20e-04 GCCCCCAAAG CTTATCTT GACAGCCATT chr3L:3054239-3054359 64 2.20e-04 TAATCCCCAT CTTATCTT TGACAGCCCC chr2L:5285999-5286119 73 2.20e-04 GTGGTAACTT CTTATCTT TATGCCGCTT chr3L:9209794-9209914 81 2.41e-04 TGGACGCACG GTTATCAA ATCTCAGCAG chr2L:14234705-14234825 99 2.41e-04 CTGGGCTTCT GTTATCAA CAGTTCATTT chr2R:8084566-8084686 49 2.41e-04 CTGCATAGGC GTTATCAA CGCCCCCTCG chr3L:4293813-4293933 54 2.41e-04 CACAAGGGCT GTTATCAA AGCCCCCCAC chr3R:21869786-21869906 27 2.41e-04 CCATCGGGAA GTTATCAA GTGGTCTGGC chrX:6805533-6805653 1 2.77e-04 . GTTATCGG CTATTGTTTG chr3L:162357-162477 94 2.77e-04 TCCCGGTGGG GTTATCAT CCTGCCCCTC chr3L:1745637-1745757 78 2.77e-04 TATCAGTTTC GTTATCAT GGAGCGGAAA chrX:20697717-20697837 11 2.95e-04 TTCATTTTAA CTTATCTC CGAGCATTAG chr3L:16652753-16652873 57 3.13e-04 TGTGATATCA GTTATCAC AATGTGTAGT chr2L:21367464-21367584 112 3.13e-04 AATCGTTTGG GTTATCAC T chr3L:19648799-19648919 90 3.13e-04 TTCATGGGGG GTTATCAC TGTCAGAAAT chr3R:12404732-12404852 86 3.31e-04 GTCCTTTATG GTTATCTG CTTGATAAGA chr3R:30064021-30064141 76 3.31e-04 TTGTGTAATT GTTATCTG CCGCCGATGA chr3R:30779425-30779545 77 4.59e-04 TTTGAAAAGC CTAATCAG TCGTAGTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11273102-11273222 1.8e-05 38_[+3]_74 chr2R:24684238-24684358 1.8e-05 62_[+3]_50 chrX:19501386-19501506 1.8e-05 49_[+3]_63 chr2R:12261089-12261209 1.8e-05 99_[+3]_13 chr2L:8940858-8940978 1.8e-05 11_[+3]_101 chr2R:19683043-19683163 1.8e-05 18_[+3]_94 chr2R:24140259-24140379 1.8e-05 95_[+3]_17 chrX:492815-492935 1.8e-05 79_[+3]_33 chr3R:31435787-31435907 1.8e-05 64_[+3]_48 chr2L:20828820-20828940 1.8e-05 78_[+3]_34 chr3R:19100227-19100347 1.8e-05 101_[+3]_11 chrX:21353686-21353806 1.8e-05 46_[+3]_66 chr3L:21281845-21281965 1.8e-05 101_[+3]_11 chr2R:6770384-6770504 3.8e-05 30_[+3]_82 chr3L:10094876-10094996 3.8e-05 19_[+3]_93 chr3R:30459691-30459811 3.8e-05 29_[+3]_83 chr2L:5211069-5211189 3.8e-05 72_[+3]_40 chr2L:9619055-9619175 3.8e-05 24_[+3]_88 chr2L:7972461-7972581 3.8e-05 106_[+3]_6 chr3R:10700790-10700910 3.8e-05 44_[+3]_68 chr3L:4686755-4686875 7.4e-05 86_[+3]_26 chr2L:10529097-10529217 7.4e-05 112_[+3] chr3R:6809955-6810075 7.4e-05 98_[+3]_14 chr3R:27705776-27705896 7.4e-05 23_[+3]_89 chr2L:8009962-8010082 7.4e-05 14_[+3]_98 chr2R:17697583-17697703 7.4e-05 35_[+3]_77 chr2L:85855-85975 7.4e-05 95_[+3]_17 chr2L:3450269-3450389 7.4e-05 35_[+3]_77 chr3R:25899849-25899969 7.4e-05 5_[+3]_107 chrX:6062295-6062415 7.4e-05 78_[+3]_34 chr2L:7795245-7795365 7.4e-05 26_[+3]_86 chr3L:4232863-4232983 7.4e-05 86_[+3]_26 chr3L:2504364-2504484 9.2e-05 91_[+3]_21 chr2L:21299649-21299769 9.2e-05 9_[+3]_103 chr2L:16448165-16448285 0.00011 13_[+3]_99 chr2R:17756469-17756589 0.00011 109_[+3]_3 chrX:16706887-16707007 0.00011 63_[+3]_49 chrX:930519-930639 0.00011 22_[+3]_90 chr3L:3415504-3415624 0.00015 39_[+3]_73 chr2L:4389504-4389624 0.00015 86_[+3]_26 chr2R:18815220-18815340 0.00015 59_[+3]_53 chr3R:8518846-8518966 0.00015 85_[+3]_27 chr3L:20431758-20431878 0.00015 24_[+3]_88 chr2L:11942980-11943100 0.00016 2_[+3]_110 chr2L:8994155-8994275 0.00016 94_[+3]_18 chr3R:11683803-11683923 0.00016 47_[+3]_65 chrX:5915147-5915267 0.00016 104_[+3]_8 chrX:2590726-2590846 0.0002 86_[+3]_26 chr2R:7953795-7953915 0.0002 12_[+3]_100 chr2L:2372269-2372389 0.0002 36_[+3]_76 chrX:509261-509381 0.0002 11_[+3]_101 chr3R:12365993-12366113 0.0002 91_[+3]_21 chr2R:10883357-10883477 0.0002 108_[+3]_4 chr2R:17120326-17120446 0.0002 70_[+3]_42 chr3R:19742982-19743102 0.00022 13_[+3]_99 chr3L:3054239-3054359 0.00022 63_[+3]_49 chr2L:5285999-5286119 0.00022 72_[+3]_40 chr3L:9209794-9209914 0.00024 80_[+3]_32 chr2L:14234705-14234825 0.00024 98_[+3]_14 chr2R:8084566-8084686 0.00024 48_[+3]_64 chr3L:4293813-4293933 0.00024 53_[+3]_59 chr3R:21869786-21869906 0.00024 26_[+3]_86 chrX:6805533-6805653 0.00028 [+3]_112 chr3L:162357-162477 0.00028 93_[+3]_19 chr3L:1745637-1745757 0.00028 77_[+3]_35 chrX:20697717-20697837 0.0003 10_[+3]_102 chr3L:16652753-16652873 0.00031 56_[+3]_56 chr2L:21367464-21367584 0.00031 111_[+3]_1 chr3L:19648799-19648919 0.00031 89_[+3]_23 chr3R:12404732-12404852 0.00033 85_[+3]_27 chr3R:30064021-30064141 0.00033 75_[+3]_37 chr3R:30779425-30779545 0.00046 76_[+3]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCAD width=8 seqs=72 chr3L:11273102-11273222 ( 39) CTTATCAG 1 chr2R:24684238-24684358 ( 63) CTTATCAG 1 chrX:19501386-19501506 ( 50) CTTATCAG 1 chr2R:12261089-12261209 ( 100) CTTATCAG 1 chr2L:8940858-8940978 ( 12) CTTATCAG 1 chr2R:19683043-19683163 ( 19) CTTATCAG 1 chr2R:24140259-24140379 ( 96) CTTATCAG 1 chrX:492815-492935 ( 80) CTTATCAG 1 chr3R:31435787-31435907 ( 65) CTTATCAG 1 chr2L:20828820-20828940 ( 79) CTTATCAG 1 chr3R:19100227-19100347 ( 102) CTTATCAG 1 chrX:21353686-21353806 ( 47) CTTATCAG 1 chr3L:21281845-21281965 ( 102) CTTATCAG 1 chr2R:6770384-6770504 ( 31) CTTATCAA 1 chr3L:10094876-10094996 ( 20) CTTATCAA 1 chr3R:30459691-30459811 ( 30) CTTATCAA 1 chr2L:5211069-5211189 ( 73) CTTATCAA 1 chr2L:9619055-9619175 ( 25) CTTATCAA 1 chr2L:7972461-7972581 ( 107) CTTATCAA 1 chr3R:10700790-10700910 ( 45) CTTATCAA 1 chr3L:4686755-4686875 ( 87) CTTATCGG 1 chr2L:10529097-10529217 ( 113) CTTATCAT 1 chr3R:6809955-6810075 ( 99) CTTATCGG 1 chr3R:27705776-27705896 ( 24) CTTATCAT 1 chr2L:8009962-8010082 ( 15) CTTATCAT 1 chr2R:17697583-17697703 ( 36) CTTATCGG 1 chr2L:85855-85975 ( 96) CTTATCAT 1 chr2L:3450269-3450389 ( 36) CTTATCAT 1 chr3R:25899849-25899969 ( 6) CTTATCGG 1 chrX:6062295-6062415 ( 79) CTTATCGG 1 chr2L:7795245-7795365 ( 27) CTTATCAT 1 chr3L:4232863-4232983 ( 87) CTTATCAT 1 chr3L:2504364-2504484 ( 92) CTTATCAC 1 chr2L:21299649-21299769 ( 10) CTTATCAC 1 chr2L:16448165-16448285 ( 14) CTTATCTG 1 chr2R:17756469-17756589 ( 110) CTTATCTG 1 chrX:16706887-16707007 ( 64) CTTATCTG 1 chrX:930519-930639 ( 23) CTTATCTG 1 chr3L:3415504-3415624 ( 40) CTTATCGA 1 chr2L:4389504-4389624 ( 87) GTTATCAG 1 chr2R:18815220-18815340 ( 60) CTTATCGA 1 chr3R:8518846-8518966 ( 86) CTTATCGA 1 chr3L:20431758-20431878 ( 25) GTTATCAG 1 chr2L:11942980-11943100 ( 3) CTTATCGT 1 chr2L:8994155-8994275 ( 95) CTTATCGT 1 chr3R:11683803-11683923 ( 48) CTTATCGT 1 chrX:5915147-5915267 ( 105) CTTATCGT 1 chrX:2590726-2590846 ( 87) CTTATCTA 1 chr2R:7953795-7953915 ( 13) CTTATCTA 1 chr2L:2372269-2372389 ( 37) CTTATCGC 1 chrX:509261-509381 ( 12) CTTATCGC 1 chr3R:12365993-12366113 ( 92) CTTATCGC 1 chr2R:10883357-10883477 ( 109) CTTATCTA 1 chr2R:17120326-17120446 ( 71) CTTATCGC 1 chr3R:19742982-19743102 ( 14) CTTATCTT 1 chr3L:3054239-3054359 ( 64) CTTATCTT 1 chr2L:5285999-5286119 ( 73) CTTATCTT 1 chr3L:9209794-9209914 ( 81) GTTATCAA 1 chr2L:14234705-14234825 ( 99) GTTATCAA 1 chr2R:8084566-8084686 ( 49) GTTATCAA 1 chr3L:4293813-4293933 ( 54) GTTATCAA 1 chr3R:21869786-21869906 ( 27) GTTATCAA 1 chrX:6805533-6805653 ( 1) GTTATCGG 1 chr3L:162357-162477 ( 94) GTTATCAT 1 chr3L:1745637-1745757 ( 78) GTTATCAT 1 chrX:20697717-20697837 ( 11) CTTATCTC 1 chr3L:16652753-16652873 ( 57) GTTATCAC 1 chr2L:21367464-21367584 ( 112) GTTATCAC 1 chr3L:19648799-19648919 ( 90) GTTATCAC 1 chr3R:12404732-12404852 ( 86) GTTATCTG 1 chr3R:30064021-30064141 ( 76) GTTATCTG 1 chr3R:30779425-30779545 ( 77) CTAATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.019 E= 2.1e-021 -1281 179 -15 -1281 -1281 -1281 -1281 187 -426 -1281 -1281 185 190 -1281 -1281 -1281 -1281 -1281 -1281 187 -1281 213 -1281 -1281 112 -1281 3 -60 -10 -72 75 -30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 2.1e-021 0.000000 0.791667 0.208333 0.000000 0.000000 0.000000 0.000000 1.000000 0.013889 0.000000 0.000000 0.986111 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.000000 0.236111 0.180556 0.250000 0.138889 0.388889 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAD MEME-3 regular expression -------------------------------------------------------------------------------- [CG]TTATC[AG][GAT] -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GVCCCCCA MEME-4 width = 8 sites = 73 llr = 577 E-value = 9.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 23:::126 pos.-specific C :4a9a982 probability G 82:1:::: matrix T :::::::1 bits 2.1 * * 1.9 *** 1.7 *** 1.5 **** Relative 1.3 * ***** Entropy 1.1 * ***** (11.4 bits) 0.9 * ***** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCCCA consensus AA AC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2198104-2198224 82 8.89e-06 TTTTGGCAAC GCCCCCCA GCGAGCCGTG chr3R:22666438-22666558 16 8.89e-06 CTTTATCGCT GCCCCCCA GCAGAGAAGC chr3L:6976773-6976893 47 8.89e-06 CAAAACGGAA GCCCCCCA CCTAGTAGTG chr3L:6915510-6915630 39 8.89e-06 TAAATTCCAA GCCCCCCA GTAGAGCACA chr3L:6916317-6916437 82 8.89e-06 TATATAGGTA GCCCCCCA TCATTACCTT chr3L:4293813-4293933 63 8.89e-06 TGTTATCAAA GCCCCCCA CACAAACATT chr3R:5199967-5200087 63 8.89e-06 CACATTGATT GCCCCCCA AAAAGACCCA chr2R:15215631-15215751 30 8.89e-06 CCTTTTATAT GCCCCCCA GGAACTTGAT chr2R:7953795-7953915 82 1.93e-05 CGGCACTCAA GACCCCCA AACGTGAGTC chr3R:10870771-10870891 109 1.93e-05 ACAGTAATCC GACCCCCA ATGA chrX:3414119-3414239 37 1.93e-05 ACGATCCGGA GACCCCCA GCGATTCACC chr3L:4232863-4232983 70 1.93e-05 CTCGCTTTGC GACCCCCA TAGACAGCTC chr3L:14779429-14779549 64 1.93e-05 TGTGCCACTC GACCCCCA ACACAGTTTA chr3L:604348-604468 77 2.82e-05 CAAGTGCCTT GGCCCCCA TGGAACGCAT chr2R:17697583-17697703 98 2.82e-05 AATTCTTGCT GGCCCCCA AAAATCACAC chr2L:3561066-3561186 59 2.82e-05 AGTACCTATG GGCCCCCA TAAATGTTTT chr2L:20828820-20828940 44 2.82e-05 TTGCTTTTAG GGCCCCCA CCTAACAAAT chrX:7303963-7304083 61 2.82e-05 TTGCAGCAGG GGCCCCCA ACCGATAACC chr2L:2806825-2806945 48 2.82e-05 gTCATTATGT GGCCCCCA GTCGCTTTAA chrX:15113755-15113875 37 2.82e-05 ATAAGAAATG GGCCCCCA GCTGGGCCTT chr3L:21498774-21498894 94 3.58e-05 TCTACTATCT GCCCCCCC TGGCTGATGG chrX:16281855-16281975 71 3.58e-05 AATAATAAGT GCCCCCCC CCCCCCACAC chr2R:22591144-22591264 66 3.58e-05 ATTGGACATG GCCCCCCC TCGAGCTGAT chr3R:20954644-20954764 43 4.47e-05 GGCGAGAAAA GACCCCCC GGCGGTCATG chr3L:18826086-18826206 28 4.47e-05 ACTGCAAAAT GACCCCCC GTGTAGAGAT chr2L:4950871-4950991 70 4.47e-05 GGGGGGACTA GACCCCCC CCACTAGACt chr3R:31197734-31197854 69 4.47e-05 GATTGTGGCA GACCCCCC GTGCAGTGCA chrX:5915147-5915267 65 4.47e-05 TCGAAAATGC GACCCCCC ATGGATGGGA chr2R:8952993-8953113 45 5.51e-05 CGGTGAGTGT ACCCCCCA GCGGTTCCAT chr3L:21839856-21839976 113 5.51e-05 ACGACGACAC ACCCCCCA chr2R:11734446-11734566 78 6.27e-05 TTGCGTAACG GGCCCCCC TTAGTCGCAT chr3R:16200759-16200879 16 7.31e-05 ATTCAATTAC GCCCCCAA TAGACATAAT chr3R:30201271-30201391 57 7.31e-05 AATTTTCCAT GCCCCCAA AGAACAGCAG chr2L:10146043-10146163 39 7.31e-05 TAATGGCAAA GCCCCCAA GCCAAGTATC chr3R:19742982-19743102 4 7.31e-05 AGA GCCCCCAA AGCTTATCTT chr3R:16446958-16447078 63 8.22e-05 CGATAACCCC GCCCCCCT GCCATCGATG chr3L:2254147-2254267 67 9.43e-05 AGATTAAAAT AACCCCCA AGCACTTGCT chr3R:26259998-26260118 44 1.17e-04 CGAAAAAACG AGCCCCCA GTTGCGTTTT chrX:6355269-6355389 84 1.17e-04 GGACACGCAA AGCCCCCA CGCAAACCAA chr3R:16347792-16347912 23 1.38e-04 TTGATTGTTT GACCCCCT CAAGCGCTTA chr3R:25321149-25321269 66 1.38e-04 CTATCATAGT GCCCCACA TTGTTCTGAC chr3L:14782474-14782594 65 1.38e-04 CCAGCTGCGA GCCCCACA TGTAAATGTG chrX:6715845-6715965 55 1.38e-04 TGCGTTCAAT GCCCCACA TGAACAGCAA chr2R:7712484-7712604 67 1.38e-04 ATTCCCATCA GCCCCACA CAAAGTGCTA chr2L:7972461-7972581 19 1.38e-04 TCCAATGATG GCCCCACA TGGCGTATGC chr3R:10700790-10700910 60 1.38e-04 CAACGCATTC GACCCCCT AGTGGAACTC chr3R:10251974-10252094 52 1.38e-04 TAAGGCAATG GACCCCCT GGCGTGTTCG chr3L:1964858-1964978 65 1.57e-04 TGATACCATT ACCCCCCC TGGAGCAATC chr3R:19100227-19100347 92 1.57e-04 TTGGGGGTCT GGCCCCAA TCCTTATCAG chrX:18857537-18857657 87 1.66e-04 GAGGCTATGT GGCCCCCT AAACTGATAC chr3L:22737906-22738026 47 1.66e-04 GATAAGAACT GGCCCCCT GCCAACAGCC chrX:23072184-23072304 55 1.98e-04 AAGATAATGA AACCCCCC GTCCGGGAAC chr2R:19363393-19363513 13 2.36e-04 TTAGATTTTG GACCCCAC CGAAAGATCT chr2L:11942980-11943100 11 2.36e-04 GACTTATCGT GCCGCCCA TTAATGTGTC chrX:492815-492935 70 2.36e-04 GCGGGGGGCA GCCGCCCA CGCTTATCAG chr3L:8346750-8346870 42 2.36e-04 TGACCCCGCC GACCCCAC CGTCCACCAC chr2R:17120326-17120446 12 2.36e-04 TTATATAGTG GACCCCAC TGCTACTTTA chr2L:3450060-3450180 47 2.36e-04 CGTCACGAGT GCCGCCCA CCAGCAAAGC chr2R:24684238-24684358 3 2.57e-04 AT ACCCCCAA GTTGCCCAAC chr3R:14364283-14364403 48 2.57e-04 TCCACCAGTT ACCCCCAA ATAACCCCCT chr3R:30428627-30428747 16 2.57e-04 TTAGAAATCT GCCCCACC GGAGGCAGAT chr3L:19258272-19258392 50 2.77e-04 TTCAGAATGT GGCCCCAC TGGGGTAACA chr2R:12952590-12952710 21 3.22e-04 CAACAGGTGG AACCCCAA TTAAATAGAC chrX:9200479-9200599 84 3.22e-04 AAAGTTTCAG AACCCCAA AAATAAATGG chr3R:22024918-22025038 43 3.22e-04 TTATCTTGAG GACCCACC AGGGCATTGT chrX:16932384-16932504 58 3.56e-04 GGTTAAACCG AACCCCCT GCGAAGCCGA chr2R:18042560-18042680 59 3.56e-04 TTGCTAATCT ACCCCACA TGACTAAAAA chrX:15451087-15451207 68 3.56e-04 GCAAGTTCAA GGCGCCCA AGATAAGACC chr3R:10884742-10884862 46 3.77e-04 GGCTTGATAG AGCCCCAA AGGATTGCTG chr3R:5309399-5309519 49 4.20e-04 TCTTTGGTCA GACCCCAT AAATCGTTCG chr3R:9049721-9049841 95 4.20e-04 CTTTGAGTTC AGCCCCCT CTGATCACCC chr3L:4686755-4686875 97 4.66e-04 CTTATCGGCA AACCCACA TGAGTGGAGT chr2L:6819184-6819304 34 5.01e-04 AGCCCAGTGG AGCCCACA TGAGCAGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2198104-2198224 8.9e-06 81_[+4]_31 chr3R:22666438-22666558 8.9e-06 15_[+4]_97 chr3L:6976773-6976893 8.9e-06 46_[+4]_66 chr3L:6915510-6915630 8.9e-06 38_[+4]_74 chr3L:6916317-6916437 8.9e-06 81_[+4]_31 chr3L:4293813-4293933 8.9e-06 62_[+4]_50 chr3R:5199967-5200087 8.9e-06 62_[+4]_50 chr2R:15215631-15215751 8.9e-06 29_[+4]_83 chr2R:7953795-7953915 1.9e-05 81_[+4]_31 chr3R:10870771-10870891 1.9e-05 108_[+4]_4 chrX:3414119-3414239 1.9e-05 36_[+4]_76 chr3L:4232863-4232983 1.9e-05 69_[+4]_43 chr3L:14779429-14779549 1.9e-05 63_[+4]_49 chr3L:604348-604468 2.8e-05 76_[+4]_36 chr2R:17697583-17697703 2.8e-05 97_[+4]_15 chr2L:3561066-3561186 2.8e-05 58_[+4]_54 chr2L:20828820-20828940 2.8e-05 43_[+4]_69 chrX:7303963-7304083 2.8e-05 60_[+4]_52 chr2L:2806825-2806945 2.8e-05 47_[+4]_65 chrX:15113755-15113875 2.8e-05 36_[+4]_76 chr3L:21498774-21498894 3.6e-05 93_[+4]_19 chrX:16281855-16281975 3.6e-05 70_[+4]_42 chr2R:22591144-22591264 3.6e-05 65_[+4]_47 chr3R:20954644-20954764 4.5e-05 42_[+4]_70 chr3L:18826086-18826206 4.5e-05 27_[+4]_85 chr2L:4950871-4950991 4.5e-05 69_[+4]_43 chr3R:31197734-31197854 4.5e-05 68_[+4]_44 chrX:5915147-5915267 4.5e-05 64_[+4]_48 chr2R:8952993-8953113 5.5e-05 44_[+4]_68 chr3L:21839856-21839976 5.5e-05 112_[+4] chr2R:11734446-11734566 6.3e-05 77_[+4]_35 chr3R:16200759-16200879 7.3e-05 15_[+4]_97 chr3R:30201271-30201391 7.3e-05 56_[+4]_56 chr2L:10146043-10146163 7.3e-05 38_[+4]_74 chr3R:19742982-19743102 7.3e-05 3_[+4]_109 chr3R:16446958-16447078 8.2e-05 62_[+4]_50 chr3L:2254147-2254267 9.4e-05 66_[+4]_46 chr3R:26259998-26260118 0.00012 43_[+4]_69 chrX:6355269-6355389 0.00012 83_[+4]_29 chr3R:16347792-16347912 0.00014 22_[+4]_90 chr3R:25321149-25321269 0.00014 65_[+4]_47 chr3L:14782474-14782594 0.00014 64_[+4]_48 chrX:6715845-6715965 0.00014 54_[+4]_58 chr2R:7712484-7712604 0.00014 66_[+4]_46 chr2L:7972461-7972581 0.00014 18_[+4]_94 chr3R:10700790-10700910 0.00014 59_[+4]_53 chr3R:10251974-10252094 0.00014 51_[+4]_61 chr3L:1964858-1964978 0.00016 64_[+4]_48 chr3R:19100227-19100347 0.00016 91_[+4]_21 chrX:18857537-18857657 0.00017 86_[+4]_26 chr3L:22737906-22738026 0.00017 46_[+4]_66 chrX:23072184-23072304 0.0002 54_[+4]_58 chr2R:19363393-19363513 0.00024 12_[+4]_100 chr2L:11942980-11943100 0.00024 10_[+4]_102 chrX:492815-492935 0.00024 69_[+4]_43 chr3L:8346750-8346870 0.00024 41_[+4]_71 chr2R:17120326-17120446 0.00024 11_[+4]_101 chr2L:3450060-3450180 0.00024 46_[+4]_66 chr2R:24684238-24684358 0.00026 2_[+4]_110 chr3R:14364283-14364403 0.00026 47_[+4]_65 chr3R:30428627-30428747 0.00026 15_[+4]_97 chr3L:19258272-19258392 0.00028 49_[+4]_63 chr2R:12952590-12952710 0.00032 20_[+4]_92 chrX:9200479-9200599 0.00032 83_[+4]_29 chr3R:22024918-22025038 0.00032 42_[+4]_70 chrX:16932384-16932504 0.00036 57_[+4]_55 chr2R:18042560-18042680 0.00036 58_[+4]_54 chrX:15451087-15451207 0.00036 67_[+4]_45 chr3R:10884742-10884862 0.00038 45_[+4]_67 chr3R:5309399-5309519 0.00042 48_[+4]_64 chr3R:9049721-9049841 0.00042 94_[+4]_18 chr3L:4686755-4686875 0.00047 96_[+4]_16 chr2L:6819184-6819304 0.0005 33_[+4]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVCCCCCA width=8 seqs=73 chr2L:2198104-2198224 ( 82) GCCCCCCA 1 chr3R:22666438-22666558 ( 16) GCCCCCCA 1 chr3L:6976773-6976893 ( 47) GCCCCCCA 1 chr3L:6915510-6915630 ( 39) GCCCCCCA 1 chr3L:6916317-6916437 ( 82) GCCCCCCA 1 chr3L:4293813-4293933 ( 63) GCCCCCCA 1 chr3R:5199967-5200087 ( 63) GCCCCCCA 1 chr2R:15215631-15215751 ( 30) GCCCCCCA 1 chr2R:7953795-7953915 ( 82) GACCCCCA 1 chr3R:10870771-10870891 ( 109) GACCCCCA 1 chrX:3414119-3414239 ( 37) GACCCCCA 1 chr3L:4232863-4232983 ( 70) GACCCCCA 1 chr3L:14779429-14779549 ( 64) GACCCCCA 1 chr3L:604348-604468 ( 77) GGCCCCCA 1 chr2R:17697583-17697703 ( 98) GGCCCCCA 1 chr2L:3561066-3561186 ( 59) GGCCCCCA 1 chr2L:20828820-20828940 ( 44) GGCCCCCA 1 chrX:7303963-7304083 ( 61) GGCCCCCA 1 chr2L:2806825-2806945 ( 48) GGCCCCCA 1 chrX:15113755-15113875 ( 37) GGCCCCCA 1 chr3L:21498774-21498894 ( 94) GCCCCCCC 1 chrX:16281855-16281975 ( 71) GCCCCCCC 1 chr2R:22591144-22591264 ( 66) GCCCCCCC 1 chr3R:20954644-20954764 ( 43) GACCCCCC 1 chr3L:18826086-18826206 ( 28) GACCCCCC 1 chr2L:4950871-4950991 ( 70) GACCCCCC 1 chr3R:31197734-31197854 ( 69) GACCCCCC 1 chrX:5915147-5915267 ( 65) GACCCCCC 1 chr2R:8952993-8953113 ( 45) ACCCCCCA 1 chr3L:21839856-21839976 ( 113) ACCCCCCA 1 chr2R:11734446-11734566 ( 78) GGCCCCCC 1 chr3R:16200759-16200879 ( 16) GCCCCCAA 1 chr3R:30201271-30201391 ( 57) GCCCCCAA 1 chr2L:10146043-10146163 ( 39) GCCCCCAA 1 chr3R:19742982-19743102 ( 4) GCCCCCAA 1 chr3R:16446958-16447078 ( 63) GCCCCCCT 1 chr3L:2254147-2254267 ( 67) AACCCCCA 1 chr3R:26259998-26260118 ( 44) AGCCCCCA 1 chrX:6355269-6355389 ( 84) AGCCCCCA 1 chr3R:16347792-16347912 ( 23) GACCCCCT 1 chr3R:25321149-25321269 ( 66) GCCCCACA 1 chr3L:14782474-14782594 ( 65) GCCCCACA 1 chrX:6715845-6715965 ( 55) GCCCCACA 1 chr2R:7712484-7712604 ( 67) GCCCCACA 1 chr2L:7972461-7972581 ( 19) GCCCCACA 1 chr3R:10700790-10700910 ( 60) GACCCCCT 1 chr3R:10251974-10252094 ( 52) GACCCCCT 1 chr3L:1964858-1964978 ( 65) ACCCCCCC 1 chr3R:19100227-19100347 ( 92) GGCCCCAA 1 chrX:18857537-18857657 ( 87) GGCCCCCT 1 chr3L:22737906-22738026 ( 47) GGCCCCCT 1 chrX:23072184-23072304 ( 55) AACCCCCC 1 chr2R:19363393-19363513 ( 13) GACCCCAC 1 chr2L:11942980-11943100 ( 11) GCCGCCCA 1 chrX:492815-492935 ( 70) GCCGCCCA 1 chr3L:8346750-8346870 ( 42) GACCCCAC 1 chr2R:17120326-17120446 ( 12) GACCCCAC 1 chr2L:3450060-3450180 ( 47) GCCGCCCA 1 chr2R:24684238-24684358 ( 3) ACCCCCAA 1 chr3R:14364283-14364403 ( 48) ACCCCCAA 1 chr3R:30428627-30428747 ( 16) GCCCCACC 1 chr3L:19258272-19258392 ( 50) GGCCCCAC 1 chr2R:12952590-12952710 ( 21) AACCCCAA 1 chrX:9200479-9200599 ( 84) AACCCCAA 1 chr3R:22024918-22025038 ( 43) GACCCACC 1 chrX:16932384-16932504 ( 58) AACCCCCT 1 chr2R:18042560-18042680 ( 59) ACCCCACA 1 chrX:15451087-15451207 ( 68) GGCGCCCA 1 chr3R:10884742-10884862 ( 46) AGCCCCAA 1 chr3R:5309399-5309519 ( 49) GACCCCAT 1 chr3R:9049721-9049841 ( 95) AGCCCCCT 1 chr3L:4686755-4686875 ( 97) AACCCACA 1 chr2L:6819184-6819304 ( 34) AGCCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 9.6e-018 -20 -1283 173 -1283 30 89 10 -1283 -1283 213 -1283 -1283 -1283 205 -207 -1283 -1283 213 -1283 -1283 -97 192 -1283 -1283 -38 180 -1283 -1283 127 3 -1283 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 9.6e-018 0.232877 0.000000 0.767123 0.000000 0.328767 0.424658 0.246575 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.945205 0.054795 0.000000 0.000000 1.000000 0.000000 0.000000 0.136986 0.863014 0.000000 0.000000 0.205479 0.794521 0.000000 0.000000 0.643836 0.232877 0.000000 0.123288 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVCCCCCA MEME-4 regular expression -------------------------------------------------------------------------------- [GA][CAG]CCCC[CA][AC] -------------------------------------------------------------------------------- Time 25.39 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTWTTKC MEME-5 width = 8 sites = 44 llr = 352 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::6:::: pos.-specific C :::::::9 probability G ::3::361 matrix T aa74a74: bits 2.1 1.9 ** * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 *** **** (11.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTGC consensus GT GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30105329-30105449 75 2.14e-05 TGGGGGATCG TTTATTGC AAGATTAGAG chr3R:7514550-7514670 27 2.14e-05 GTGTTTGAAT TTTATTGC CAAACTTTGG chr2L:2362328-2362448 39 2.14e-05 GTAAAAGATA TTTATTGC AGCTCCTCTA chr2R:17694519-17694639 109 2.14e-05 ACCTTAGAAC TTTATTGC CCTA chr3L:12827842-12827962 99 2.14e-05 TCCGATAGTA TTTATTGC ACTCTCTCGG chr3L:604348-604468 15 4.32e-05 ACGATTTTTT TTTTTTGC ATGCCAAATA chr2R:21156434-21156554 21 4.32e-05 TTGTTGGTGG TTTTTTGC TCTTTTGCTC chr3L:16137287-16137407 50 8.66e-05 TATTTGCTGT TTTATTTC AGTTATTTCC chr2R:7626468-7626588 13 8.66e-05 CAAAATTCCT TTGATTGC AGAACGAAAG chr2L:16448165-16448285 27 8.66e-05 ATCTGGCCAG TTTATTTC TTTTTCAAAA chr3L:16652753-16652873 99 8.66e-05 ACCAAAGAAA TTGATTGC ATTGACCTTT chr3R:28325101-28325221 95 8.66e-05 ACAAATCTAT TTTATTTC TAAGCATTGC chr2R:7710254-7710374 47 8.66e-05 AGTCATTATC TTGATTGC TCGAATTTTT chr2L:18781603-18781723 56 8.66e-05 CCATAAACGC TTGATTGC CAGTGTGTGG chr3L:21281845-21281965 94 8.66e-05 TGGGGGCCGA TTTATTTC CTTATCAGCT chr3R:11683803-11683923 90 8.66e-05 ACCCACCCAG TTTATTTC TTCCTTTACG chr3R:24016442-24016562 62 1.05e-04 GCACCCACTT TTTATGGC ACAAATAAAA chr3R:15231866-15231986 70 1.05e-04 CGCTTATTGA TTTATGGC CAGTTTGTCG chr2L:13842741-13842861 95 1.05e-04 CCGCACATGG TTTATGGC CCGCACGTTT chr2R:19324888-19325008 78 1.05e-04 TGAATGAAAA TTTATGGC CAAATTGACG chr3R:20954644-20954764 108 1.05e-04 GTACAACGGC TTTATGGC TCATT chr2L:451863-451983 65 1.05e-04 GGGGTTCCTA TTTATGGC ACTGATAAGA chr3L:14779429-14779549 78 1.05e-04 CCCAACACAG TTTATGGC ACTGATAAGC chr3R:22453541-22453661 64 1.49e-04 GTCGTGCTAT TTTTTTTC CCAACGCTTC chr2L:2198104-2198224 32 1.49e-04 TCACTAAAAA TTGTTTGC ACTCTCTCGC chrX:6805533-6805653 12 1.49e-04 TTATCGGCTA TTGTTTGC CCTATCGGAT chr3L:7760174-7760294 34 1.49e-04 CAGGCGTTCC TTTTTTTC GTATTTTGAA chr3R:16347792-16347912 82 1.49e-04 GTTCGGTGAG TTTTTTTC TTTCGTTTTT chr2L:9691366-9691486 35 1.49e-04 ATTATTATTA TTTTTTTC TTAACGATTC chr3L:4293813-4293933 110 1.49e-04 TGCATTAGCT TTGTTTGC GTT chr3L:18826086-18826206 72 1.49e-04 TATGTTAATG TTTTTTTC TTTTGGTGAA chr2R:24684238-24684358 46 1.67e-04 TTGATATGTC TTTTTGGC ATTGTTAGCC chr3L:17922580-17922700 41 1.67e-04 CCTTTTGGCT TTTTTGGC TGCTTGGCGC chr3R:25238886-25239006 105 1.67e-04 TTTTGTTTCA TTTTTGGC CAGCAATC chr3L:9209794-9209914 7 1.89e-04 TTCCAC TTGATTTC GAGTGTTTGT chr3L:22458292-22458412 22 2.25e-04 GGGGTATTGA TTGATGGC CTGCCGATGC chr2R:8451939-8452059 106 2.47e-04 GAAACTGTCA TTGTTTTC GTACTCC chr2L:107187-107307 56 2.47e-04 ATGGGGCTTG TTGTTTTC GGTTATATTC chr3L:11005271-11005391 113 2.47e-04 AGATTAAAAG TTGTTTTC chr3R:10700790-10700910 103 2.47e-04 AGAAATGATT TTGTTTTC AAACATCATG chr2L:20828820-20828940 95 2.84e-04 AGTATAAAGA TTTTTGTC TTATCTCTTT chr3R:30201271-30201391 38 3.42e-04 AATGCCAAAT TTTATTGG AAATTTTCCA chrX:930519-930639 76 3.42e-04 GGTCTTGGGT TTTATTGG CCCGACGGAG chr3L:3054239-3054359 111 3.42e-04 AGCAAGTGGC TTTATTGG CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30105329-30105449 2.1e-05 74_[+5]_38 chr3R:7514550-7514670 2.1e-05 26_[+5]_86 chr2L:2362328-2362448 2.1e-05 38_[+5]_74 chr2R:17694519-17694639 2.1e-05 108_[+5]_4 chr3L:12827842-12827962 2.1e-05 98_[+5]_14 chr3L:604348-604468 4.3e-05 14_[+5]_98 chr2R:21156434-21156554 4.3e-05 20_[+5]_92 chr3L:16137287-16137407 8.7e-05 49_[+5]_63 chr2R:7626468-7626588 8.7e-05 12_[+5]_100 chr2L:16448165-16448285 8.7e-05 26_[+5]_86 chr3L:16652753-16652873 8.7e-05 98_[+5]_14 chr3R:28325101-28325221 8.7e-05 94_[+5]_18 chr2R:7710254-7710374 8.7e-05 46_[+5]_66 chr2L:18781603-18781723 8.7e-05 55_[+5]_57 chr3L:21281845-21281965 8.7e-05 93_[+5]_19 chr3R:11683803-11683923 8.7e-05 89_[+5]_23 chr3R:24016442-24016562 0.0001 61_[+5]_51 chr3R:15231866-15231986 0.0001 69_[+5]_43 chr2L:13842741-13842861 0.0001 94_[+5]_18 chr2R:19324888-19325008 0.0001 77_[+5]_35 chr3R:20954644-20954764 0.0001 107_[+5]_5 chr2L:451863-451983 0.0001 64_[+5]_48 chr3L:14779429-14779549 0.0001 77_[+5]_35 chr3R:22453541-22453661 0.00015 63_[+5]_49 chr2L:2198104-2198224 0.00015 31_[+5]_81 chrX:6805533-6805653 0.00015 11_[+5]_101 chr3L:7760174-7760294 0.00015 33_[+5]_79 chr3R:16347792-16347912 0.00015 81_[+5]_31 chr2L:9691366-9691486 0.00015 34_[+5]_78 chr3L:4293813-4293933 0.00015 109_[+5]_3 chr3L:18826086-18826206 0.00015 71_[+5]_41 chr2R:24684238-24684358 0.00017 45_[+5]_67 chr3L:17922580-17922700 0.00017 40_[+5]_72 chr3R:25238886-25239006 0.00017 104_[+5]_8 chr3L:9209794-9209914 0.00019 6_[+5]_106 chr3L:22458292-22458412 0.00023 21_[+5]_91 chr2R:8451939-8452059 0.00025 105_[+5]_7 chr2L:107187-107307 0.00025 55_[+5]_57 chr3L:11005271-11005391 0.00025 112_[+5] chr3R:10700790-10700910 0.00025 102_[+5]_10 chr2L:20828820-20828940 0.00028 94_[+5]_18 chr3R:30201271-30201391 0.00034 37_[+5]_75 chrX:930519-930639 0.00034 75_[+5]_37 chr3L:3054239-3054359 0.00034 110_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTWTTKC width=8 seqs=44 chr3R:30105329-30105449 ( 75) TTTATTGC 1 chr3R:7514550-7514670 ( 27) TTTATTGC 1 chr2L:2362328-2362448 ( 39) TTTATTGC 1 chr2R:17694519-17694639 ( 109) TTTATTGC 1 chr3L:12827842-12827962 ( 99) TTTATTGC 1 chr3L:604348-604468 ( 15) TTTTTTGC 1 chr2R:21156434-21156554 ( 21) TTTTTTGC 1 chr3L:16137287-16137407 ( 50) TTTATTTC 1 chr2R:7626468-7626588 ( 13) TTGATTGC 1 chr2L:16448165-16448285 ( 27) TTTATTTC 1 chr3L:16652753-16652873 ( 99) TTGATTGC 1 chr3R:28325101-28325221 ( 95) TTTATTTC 1 chr2R:7710254-7710374 ( 47) TTGATTGC 1 chr2L:18781603-18781723 ( 56) TTGATTGC 1 chr3L:21281845-21281965 ( 94) TTTATTTC 1 chr3R:11683803-11683923 ( 90) TTTATTTC 1 chr3R:24016442-24016562 ( 62) TTTATGGC 1 chr3R:15231866-15231986 ( 70) TTTATGGC 1 chr2L:13842741-13842861 ( 95) TTTATGGC 1 chr2R:19324888-19325008 ( 78) TTTATGGC 1 chr3R:20954644-20954764 ( 108) TTTATGGC 1 chr2L:451863-451983 ( 65) TTTATGGC 1 chr3L:14779429-14779549 ( 78) TTTATGGC 1 chr3R:22453541-22453661 ( 64) TTTTTTTC 1 chr2L:2198104-2198224 ( 32) TTGTTTGC 1 chrX:6805533-6805653 ( 12) TTGTTTGC 1 chr3L:7760174-7760294 ( 34) TTTTTTTC 1 chr3R:16347792-16347912 ( 82) TTTTTTTC 1 chr2L:9691366-9691486 ( 35) TTTTTTTC 1 chr3L:4293813-4293933 ( 110) TTGTTTGC 1 chr3L:18826086-18826206 ( 72) TTTTTTTC 1 chr2R:24684238-24684358 ( 46) TTTTTGGC 1 chr3L:17922580-17922700 ( 41) TTTTTGGC 1 chr3R:25238886-25239006 ( 105) TTTTTGGC 1 chr3L:9209794-9209914 ( 7) TTGATTTC 1 chr3L:22458292-22458412 ( 22) TTGATGGC 1 chr2R:8451939-8452059 ( 106) TTGTTTTC 1 chr2L:107187-107307 ( 56) TTGTTTTC 1 chr3L:11005271-11005391 ( 113) TTGTTTTC 1 chr3R:10700790-10700910 ( 103) TTGTTTTC 1 chr2L:20828820-20828940 ( 95) TTTTTGTC 1 chr3R:30201271-30201391 ( 38) TTTATTGG 1 chrX:930519-930639 ( 76) TTTATTGG 1 chr3L:3054239-3054359 ( 111) TTTATTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.67987 E= 3.5e+004 -1210 -1210 -1210 187 -1210 -1210 -1210 187 -1210 -1210 36 137 114 -1210 -1210 58 -1210 -1210 -1210 187 -1210 -1210 24 141 -1210 -1210 147 41 -1210 203 -176 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 3.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.295455 0.704545 0.590909 0.000000 0.000000 0.409091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.636364 0.363636 0.000000 0.931818 0.068182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTWTTKC MEME-5 regular expression -------------------------------------------------------------------------------- TT[TG][AT]T[TG][GT]C -------------------------------------------------------------------------------- Time 31.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20431758-20431878 8.72e-03 120 chr3R:25300687-25300807 2.23e-02 42_[+2(6.29e-05)]_70 chr2L:5285999-5286119 8.05e-03 22_[+1(8.48e-05)]_90 chrX:5915147-5915267 8.65e-03 64_[+4(4.47e-05)]_48 chr2R:22591144-22591264 1.25e-02 65_[+4(3.58e-05)]_47 chr3R:31197734-31197854 3.90e-02 68_[+4(4.47e-05)]_44 chr3R:10251974-10252094 1.43e-02 87_[+1(3.48e-05)]_25 chr2L:3450060-3450180 2.33e-02 120 chr3R:11683803-11683923 2.71e-03 89_[+5(8.66e-05)]_23 chr3L:21281845-21281965 1.56e-05 81_[+2(9.25e-06)]_4_[+5(8.66e-05)]_\ [+3(1.76e-05)]_11 chr3R:10700790-10700910 1.31e-04 44_[+3(3.82e-05)]_68 chr3R:5571904-5572024 3.73e-03 10_[+1(6.41e-05)]_89_[+1(3.48e-05)]_\ 5 chrX:2197943-2198063 1.55e-03 4_[+2(9.25e-06)]_63_[+1(3.48e-05)]_\ 37 chr3L:12827842-12827962 1.23e-03 40_[+1(8.48e-05)]_50_[+5(2.14e-05)]_\ 14 chr3L:14779429-14779549 2.89e-04 63_[+4(1.93e-05)]_15_[+1(3.48e-05)]_\ 26 chr3L:3054239-3054359 3.56e-04 4_[+2(1.85e-05)]_108 chr3R:9049721-9049841 6.29e-04 75_[+1(3.48e-05)]_37 chr3L:22737906-22738026 2.31e-02 34_[+1(3.48e-05)]_78 chr3R:12372967-12373087 2.29e-01 120 chr2L:136381-136501 5.04e-03 61_[+2(9.25e-06)]_51 chr3R:30428627-30428747 2.31e-02 120 chrX:21353686-21353806 6.89e-03 46_[+3(1.76e-05)]_66 chr3R:18449313-18449433 8.56e-03 17_[+1(6.41e-05)]_95 chr3R:7535745-7535865 2.99e-01 120 chr2L:7972461-7972581 1.11e-02 106_[+3(3.82e-05)]_6 chr3R:19742982-19743102 5.33e-03 3_[+4(7.31e-05)]_109 chr3R:22520601-22520721 9.15e-03 86_[+2(9.25e-06)]_26 chr3R:30599542-30599662 1.32e-02 48_[+2(9.25e-06)]_64 chr3R:12370384-12370504 7.14e-03 54_[+2(9.25e-06)]_58 chr3R:21869786-21869906 2.57e-03 42_[+2(9.25e-06)]_70 chr2R:7712484-7712604 7.37e-02 120 chr3R:31109204-31109324 1.64e-01 120 chr3R:11666427-11666547 1.22e-01 120 chr2L:7435649-7435769 4.40e-02 98_[+1(6.41e-05)]_14 chr3R:11684479-11684599 1.75e-02 70_[+2(8.50e-05)]_42 chr3L:4232863-4232983 4.75e-03 49_[+4(4.47e-05)]_12_[+4(1.93e-05)]_\ 9_[+3(7.42e-05)]_26 chr2R:17120326-17120446 6.28e-03 120 chrX:15113755-15113875 4.03e-03 23_[+1(3.48e-05)]_5_[+4(2.82e-05)]_\ 76 chr2L:9619055-9619175 3.77e-03 24_[+3(3.82e-05)]_88 chrX:23072184-23072304 3.18e-02 2_[+1(3.48e-05)]_110 chr3L:21839856-21839976 2.32e-04 44_[+2(5.52e-05)]_60_[+4(5.51e-05)] chr2L:21299649-21299769 3.13e-02 9_[+3(9.18e-05)]_103 chr3R:10877931-10878051 4.40e-01 120 chrX:930519-930639 4.20e-04 92_[+1(6.41e-05)]_20 chr2R:15215631-15215751 2.20e-03 29_[+4(8.89e-06)]_5_[+1(8.48e-05)]_\ 70 chr3R:25347011-25347131 2.41e-02 64_[+1(3.48e-05)]_48 chr2R:24297610-24297730 5.62e-02 120 chr2L:7795245-7795365 2.10e-02 26_[+3(7.42e-05)]_86 chr2L:4950871-4950991 2.15e-03 69_[+4(4.47e-05)]_43 chr2L:8994155-8994275 2.08e-03 85_[+2(9.25e-06)]_27 chrX:11420910-11421030 1.03e-01 120 chr3L:9846120-9846240 8.88e-02 30_[+2(1.85e-05)]_82 chr3R:5610940-5611060 2.10e-01 120 chrX:16281855-16281975 1.51e-03 46_[+2(6.29e-05)]_16_[+4(3.58e-05)]_\ 42 chr3R:25314901-25315021 3.55e-02 120 chr3L:18826086-18826206 4.90e-03 27_[+4(4.47e-05)]_85 chrX:3414119-3414239 1.33e-01 36_[+4(1.93e-05)]_76 chr3L:2504364-2504484 8.59e-04 66_[+1(3.48e-05)]_17_[+3(9.18e-05)]_\ 21 chr2R:10883357-10883477 9.25e-02 120 chr2L:18781603-18781723 1.69e-03 55_[+5(8.66e-05)]_14_[+1(8.48e-05)]_\ 35 chr3R:5199967-5200087 1.13e-03 62_[+4(8.89e-06)]_50 chr3R:10870771-10870891 4.25e-03 108_[+4(1.93e-05)]_4 chr3L:11005271-11005391 8.04e-02 120 chr2L:2806825-2806945 8.13e-02 47_[+4(2.82e-05)]_65 chrX:2175537-2175657 1.08e-02 80_[+1(8.48e-05)]_32 chr3L:3236459-3236579 1.13e-01 120 chr3R:19100227-19100347 2.08e-05 12_[+1(6.41e-05)]_81_[+3(1.76e-05)]_\ 11 chrX:6062295-6062415 1.09e-03 78_[+3(7.42e-05)]_34 chr3L:4293813-4293933 8.25e-05 62_[+4(8.89e-06)]_50 chr3R:25899849-25899969 3.05e-04 5_[+3(7.42e-05)]_107 chrX:16746066-16746186 8.51e-02 120 chr3L:8346750-8346870 4.23e-01 120 chr2L:5211069-5211189 1.11e-03 54_[+2(5.52e-05)]_10_[+3(3.82e-05)]_\ 40 chr3L:2254147-2254267 8.31e-03 66_[+4(9.43e-05)]_46 chr2R:21156434-21156554 1.40e-03 20_[+5(4.32e-05)]_37_[+2(5.52e-05)]_\ 47 chr3R:7548900-7549020 8.82e-01 120 chrX:6355269-6355389 1.55e-02 5_[+1(3.48e-05)]_107 chr2R:16139629-16139749 2.96e-01 120 chr3R:30459691-30459811 9.14e-02 29_[+3(3.82e-05)]_83 chr2L:10393578-10393698 3.31e-01 120 chr3R:25238886-25239006 1.58e-02 31_[+2(3.54e-05)]_81 chrX:7303963-7304083 3.98e-03 60_[+4(2.82e-05)]_52 chr3R:15339252-15339372 5.54e-03 70_[+1(3.48e-05)]_42 chr2L:306561-306681 3.71e-02 38_[+2(5.52e-05)]_74 chr3R:12365993-12366113 1.25e-02 120 chr2R:7710254-7710374 1.02e-01 46_[+5(8.66e-05)]_66 chr3L:19258272-19258392 1.19e-02 120 chr3L:1745637-1745757 3.12e-01 120 chr3R:30779425-30779545 5.70e-02 120 chrX:20697717-20697837 1.04e-03 53_[+2(9.25e-06)]_59 chr3R:30064021-30064141 4.32e-02 120 chr2R:6645830-6645950 7.67e-02 54_[+2(9.25e-06)]_58 chrX:13636881-13637001 3.37e-02 32_[+2(8.50e-05)]_80 chr3L:6916317-6916437 3.41e-03 81_[+4(8.89e-06)]_31 chr2L:18955799-18955919 5.24e-01 120 chr3R:16008369-16008489 1.94e-01 120 chr2L:20828820-20828940 2.84e-04 43_[+4(2.82e-05)]_27_[+3(1.76e-05)]_\ 34 chr3L:6915510-6915630 3.05e-02 38_[+4(8.89e-06)]_74 chr3R:12404732-12404852 1.61e-03 33_[+2(8.50e-05)]_53_[+1(8.48e-05)]_\ 18 chr2R:15557553-15557673 2.86e-02 35_[+2(2.76e-05)]_77 chr2L:9691366-9691486 4.68e-04 56_[+1(3.48e-05)]_56 chr3R:22024918-22025038 2.36e-02 120 chr2L:3450269-3450389 1.59e-01 35_[+3(7.42e-05)]_77 chr3R:8642389-8642509 1.70e-01 51_[+2(8.50e-05)]_61 chr2L:3561066-3561186 2.81e-02 58_[+4(2.82e-05)]_54 chrX:598514-598634 6.23e-02 120 chrX:3430031-3430151 1.84e-03 59_[+1(3.48e-05)]_53 chr3L:4231800-4231920 5.07e-01 120 chr2R:19332473-19332593 9.55e-02 120 chr2L:13779288-13779408 3.28e-02 76_[+1(3.48e-05)]_36 chr3L:22458292-22458412 2.07e-03 88_[+1(6.41e-05)]_24 chr3L:7759974-7760094 9.47e-02 120 chr3L:8097268-8097388 2.54e-03 95_[+1(6.41e-05)]_17 chr2L:451863-451983 4.57e-03 73_[+1(3.48e-05)]_39 chr3R:8518846-8518966 3.11e-01 120 chrX:6715845-6715965 4.84e-01 120 chr3R:31435787-31435907 2.94e-02 64_[+3(1.76e-05)]_48 chrX:492815-492935 2.58e-06 59_[+2(3.54e-05)]_12_[+3(1.76e-05)]_\ 33 chr2L:13846340-13846460 8.29e-01 120 chr2R:24140259-24140379 5.40e-04 95_[+3(1.76e-05)]_17 chr3L:17922580-17922700 1.02e-03 76_[+2(9.25e-06)]_36 chrX:16706887-16707007 4.69e-02 120 chr2L:3445784-3445904 1.85e-01 120 chrX:15451087-15451207 2.32e-03 49_[+2(2.76e-05)]_63 chr2R:18815220-18815340 4.31e-02 120 chr3L:21400369-21400489 4.38e-01 120 chr2R:17694519-17694639 4.04e-04 43_[+1(6.41e-05)]_57_[+5(2.14e-05)]_\ 4 chr2R:15560331-15560451 9.36e-03 42_[+1(3.48e-05)]_70 chr2L:10146043-10146163 1.53e-02 38_[+4(7.31e-05)]_74 chr3R:28325101-28325221 3.25e-03 32_[+2(2.76e-05)]_54_[+5(8.66e-05)]_\ 18 chr2R:19683043-19683163 4.25e-02 18_[+3(1.76e-05)]_94 chr3R:7058170-7058290 1.64e-01 82_[+1(8.48e-05)]_30 chr2L:6006887-6007007 2.08e-03 33_[+1(6.41e-05)]_79 chr3L:217617-217737 2.32e-01 120 chr3R:5309399-5309519 1.32e-01 120 chr2L:20883017-20883137 2.39e-01 81_[+1(6.41e-05)]_31 chr2R:17598588-17598708 6.30e-02 120 chr3L:8059920-8060040 1.30e-01 120 chrX:509261-509381 2.22e-02 120 chr2L:13881622-13881742 1.67e-01 120 chr3L:10094876-10094996 2.69e-03 19_[+3(3.82e-05)]_93 chr3L:1202942-1203062 7.52e-01 120 chr2L:311050-311170 2.67e-01 120 chr3R:20954644-20954764 2.20e-04 42_[+4(4.47e-05)]_16_[+2(3.54e-05)]_\ 46 chrX:9596848-9596968 3.98e-01 120 chr2R:19324888-19325008 8.38e-02 120 chr3L:19648799-19648919 2.49e-03 60_[+1(3.48e-05)]_52 chr2R:11734446-11734566 1.03e-02 77_[+4(6.27e-05)]_35 chr2L:8940858-8940978 8.77e-04 11_[+3(1.76e-05)]_35_[+1(3.48e-05)]_\ 58 chr2R:8084566-8084686 1.18e-01 120 chr3R:21758855-21758975 1.06e-01 120 chr3L:14782474-14782594 2.49e-02 120 chr3L:6976773-6976893 1.51e-02 46_[+4(8.89e-06)]_66 chr2R:6770384-6770504 2.98e-02 30_[+3(3.82e-05)]_82 chr2R:14246739-14246859 9.09e-01 120 chrX:15307518-15307638 6.33e-02 120 chr2R:18042560-18042680 2.24e-01 120 chr2R:8952993-8953113 8.83e-02 44_[+4(5.51e-05)]_68 chr3R:29788286-29788406 2.50e-01 120 chr2L:107187-107307 1.39e-02 120 chr2L:2372269-2372389 1.52e-02 120 chr3R:23226271-23226391 3.05e-02 120 chr2R:9891002-9891122 4.96e-01 120 chr3R:22666438-22666558 7.10e-03 15_[+4(8.89e-06)]_97 chr2L:85855-85975 7.86e-02 95_[+3(7.42e-05)]_17 chr3R:25321149-25321269 1.06e-01 120 chr2R:12261089-12261209 4.78e-02 99_[+3(1.76e-05)]_13 chr2L:11942980-11943100 3.02e-02 120 chr3R:24053779-24053899 1.14e-01 120 chr2R:7953795-7953915 2.62e-03 81_[+4(1.93e-05)]_31 chr3L:6913931-6914051 1.68e-01 89_[+2(2.76e-05)]_23 chr2R:19363393-19363513 1.19e-01 120 chr2R:17697583-17697703 5.41e-04 35_[+3(7.42e-05)]_54_[+4(2.82e-05)]_\ 15 chr3R:16347792-16347912 9.14e-03 120 chr2L:2372476-2372596 4.69e-01 120 chr3R:14364283-14364403 2.06e-01 120 chr3L:14559254-14559374 4.83e-01 120 chr3L:1964858-1964978 3.30e-01 120 chr2L:2808465-2808585 5.01e-01 120 chr2L:8009962-8010082 4.59e-03 14_[+3(7.42e-05)]_98 chrX:15522532-15522652 9.73e-01 120 chr2L:8991666-8991786 3.15e-01 120 chr3L:21498774-21498894 5.81e-02 93_[+4(3.58e-05)]_19 chr3R:30201271-30201391 2.08e-02 56_[+4(7.31e-05)]_56 chr2L:13842741-13842861 6.34e-04 120 chr3L:16666588-16666708 4.67e-01 120 chr3L:7760174-7760294 3.75e-01 120 chr2R:7926474-7926594 1.64e-01 120 chr3L:8709107-8709227 4.60e-01 120 chr2R:12926332-12926452 3.71e-01 120 chrX:19501386-19501506 4.55e-02 49_[+3(1.76e-05)]_63 chr3L:162357-162477 2.86e-03 11_[+1(6.41e-05)]_101 chr3R:15231866-15231986 4.45e-03 120 chr2R:24684238-24684358 9.91e-06 62_[+3(1.76e-05)]_30_[+1(6.41e-05)]_\ 12 chr2L:4389504-4389624 2.23e-01 120 chr3L:3415504-3415624 4.62e-03 24_[+2(1.85e-05)]_88 chr2L:2362328-2362448 6.32e-04 38_[+5(2.14e-05)]_74 chrX:6805533-6805653 4.17e-03 120 chr2L:21367464-21367584 4.97e-02 120 chr2L:2198104-2198224 5.94e-03 81_[+4(8.89e-06)]_31 chr3R:27705776-27705896 3.73e-02 23_[+3(7.42e-05)]_89 chrX:16932384-16932504 6.53e-02 120 chr3L:4550290-4550410 6.28e-02 120 chr2R:17750564-17750684 6.58e-04 57_[+1(6.41e-05)]_55 chrX:7316236-7316356 2.34e-01 82_[+1(6.41e-05)]_30 chrX:2590726-2590846 3.65e-02 120 chrX:9200479-9200599 3.58e-01 120 chr3L:12078059-12078179 5.19e-02 33_[+2(8.50e-05)]_79 chr3R:21082638-21082758 4.06e-03 78_[+2(1.85e-05)]_34 chr3R:10884742-10884862 1.09e-02 120 chr3R:22453541-22453661 7.95e-02 120 chr2R:15999653-15999773 1.22e-01 120 chr3R:6809955-6810075 1.22e-01 98_[+3(7.42e-05)]_14 chrX:18857537-18857657 1.07e-02 51_[+2(5.52e-05)]_61 chr2L:6255597-6255717 9.82e-02 71_[+1(8.48e-05)]_41 chr2R:8451939-8452059 2.18e-01 120 chr2L:14234705-14234825 7.43e-02 120 chr3L:16652753-16652873 4.35e-03 98_[+5(8.66e-05)]_14 chr3L:19565410-19565530 2.95e-01 120 chr3R:19834105-19834225 6.38e-01 120 chr3L:9209794-9209914 5.62e-02 120 chr2R:17756469-17756589 1.96e-02 120 chr3R:16446958-16447078 3.97e-03 62_[+4(8.22e-05)]_50 chr3R:14748057-14748177 6.56e-01 120 chr2R:8459916-8460036 5.56e-02 120 chr2L:16448165-16448285 6.38e-03 26_[+5(8.66e-05)]_86 chr2L:10529097-10529217 3.38e-03 37_[+2(9.25e-06)]_67_[+3(7.42e-05)] chr2R:12952590-12952710 8.11e-03 100_[+1(6.41e-05)]_12 chr3L:4686755-4686875 2.60e-02 86_[+3(7.42e-05)]_26 chrX:14946715-14946835 7.24e-01 120 chr2R:24985083-24985203 7.54e-01 120 chr2L:19421773-19421893 2.63e-02 87_[+1(8.48e-05)]_25 chr2R:22116398-22116518 1.50e-01 120 chr3R:7514550-7514670 1.92e-02 26_[+5(2.14e-05)]_86 chr3L:1119484-1119604 2.08e-01 120 chr2R:7626468-7626588 2.09e-01 12_[+5(8.66e-05)]_100 chr2L:6819184-6819304 6.97e-01 120 chr3R:27253955-27254075 1.37e-01 120 chr3R:16200759-16200879 9.43e-03 15_[+4(7.31e-05)]_97 chr3L:604348-604468 4.41e-03 14_[+5(4.32e-05)]_54_[+4(2.82e-05)]_\ 36 chr2L:10456052-10456172 1.96e-01 120 chr3R:26259998-26260118 8.35e-02 120 chr2R:16009135-16009255 2.43e-01 120 chr3R:20823874-20823994 3.43e-01 120 chr3R:30105329-30105449 8.70e-03 74_[+5(2.14e-05)]_38 chr2L:8220424-8220544 6.49e-02 120 chr3R:5497702-5497822 2.68e-02 50_[+1(6.41e-05)]_62 chr3L:11273102-11273222 3.10e-02 38_[+3(1.76e-05)]_15_[+3(3.82e-05)]_\ 38_[+3(9.18e-05)]_5 chr3L:16137287-16137407 5.48e-03 49_[+5(8.66e-05)]_30_[+1(8.48e-05)]_\ 25 chr3R:24016442-24016562 1.91e-02 28_[+1(8.48e-05)]_84 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************