******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/suHw.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:22339341-22339461 1.0000 120 chr2R:16036862-16036982 1.0000 120 chr2R:17345825-17345945 1.0000 120 chr2R:16609511-16609631 1.0000 120 chr3R:12949469-12949589 1.0000 120 chr2R:10996318-10996438 1.0000 120 chrX:8222851-8222971 1.0000 120 chr2R:18480195-18480315 1.0000 120 chr3R:22510943-22511063 1.0000 120 chr3R:12321382-12321502 1.0000 120 chr2R:12446004-12446124 1.0000 120 chrX:19982643-19982763 1.0000 120 chr3L:22078647-22078767 1.0000 120 chr2L:809547-809667 1.0000 120 chrX:10453709-10453829 1.0000 120 chrX:14322907-14323027 1.0000 120 chr3R:18518522-18518642 1.0000 120 chr2L:2004793-2004913 1.0000 120 chr2R:21593701-21593821 1.0000 120 chr2R:17163606-17163726 1.0000 120 chr3R:27974763-27974883 1.0000 120 chr2R:15637755-15637875 1.0000 120 chrX:2773617-2773737 1.0000 120 chr2R:7887204-7887324 1.0000 120 chrX:13548496-13548616 1.0000 120 chr2R:21208400-21208520 1.0000 120 chr3L:17784303-17784423 1.0000 120 chr2R:14579276-14579396 1.0000 120 chr3L:2316211-2316331 1.0000 120 chr2L:6783465-6783585 1.0000 120 chr2L:18845925-18846045 1.0000 120 chrX:13527307-13527427 1.0000 120 chr3L:17254697-17254817 1.0000 120 chr2L:4416124-4416244 1.0000 120 chrX:14962041-14962161 1.0000 120 chr2R:23821009-23821129 1.0000 120 chr3R:26643714-26643834 1.0000 120 chr2R:22952353-22952473 1.0000 120 chr2R:17297958-17298078 1.0000 120 chr3R:20337221-20337341 1.0000 120 chr3L:22339610-22339730 1.0000 120 chr3R:29430417-29430537 1.0000 120 chr2R:9924265-9924385 1.0000 120 chr2R:22229453-22229573 1.0000 120 chr3L:4900935-4901055 1.0000 120 chrX:18322548-18322668 1.0000 120 chr2L:12987212-12987332 1.0000 120 chr3R:16192455-16192575 1.0000 120 chr3R:22349912-22350032 1.0000 120 chr3R:28975573-28975693 1.0000 120 chr3R:13520219-13520339 1.0000 120 chrX:9915949-9916069 1.0000 120 chr2R:16255741-16255861 1.0000 120 chr3R:23235463-23235583 1.0000 120 chr3L:17442415-17442535 1.0000 120 chr2R:21596265-21596385 1.0000 120 chr2L:8808026-8808146 1.0000 120 chr2L:20384012-20384132 1.0000 120 chr2L:1527552-1527672 1.0000 120 chr2R:15004513-15004633 1.0000 120 chr2R:21355891-21356011 1.0000 120 chr3L:21874453-21874573 1.0000 120 chr3R:27027943-27028063 1.0000 120 chr2R:14995960-14996080 1.0000 120 chr3R:20083093-20083213 1.0000 120 chr3R:6302690-6302810 1.0000 120 chr2L:10045119-10045239 1.0000 120 chr3R:13283267-13283387 1.0000 120 chr3L:16318413-16318533 1.0000 120 chr2L:4270031-4270151 1.0000 120 chr2L:5635336-5635456 1.0000 120 chr2R:19315553-19315673 1.0000 120 chr3R:18681290-18681410 1.0000 120 chr3L:1227533-1227653 1.0000 120 chrX:18727002-18727122 1.0000 120 chr3R:15030509-15030629 1.0000 120 chr2R:8554303-8554423 1.0000 120 chr3L:13472003-13472123 1.0000 120 chr3R:14971493-14971613 1.0000 120 chr3R:20683649-20683769 1.0000 120 chr2L:11868973-11869093 1.0000 120 chr2R:16770675-16770795 1.0000 120 chr3R:25370711-25370831 1.0000 120 chr3R:21997323-21997443 1.0000 120 chr3L:22212547-22212667 1.0000 120 chr3L:4086585-4086705 1.0000 120 chr3R:26644569-26644689 1.0000 120 chr2L:9873476-9873596 1.0000 120 chr3R:27618585-27618705 1.0000 120 chrX:8266626-8266746 1.0000 120 chr2R:22971870-22971990 1.0000 120 chr3R:17764451-17764571 1.0000 120 chr2R:11133202-11133322 1.0000 120 chr2L:16138718-16138838 1.0000 120 chr2L:3094325-3094445 1.0000 120 chr3R:25378633-25378753 1.0000 120 chr3R:25570622-25570742 1.0000 120 chr3R:7290442-7290562 1.0000 120 chr3R:22644283-22644403 1.0000 120 chr3R:27028217-27028337 1.0000 120 chr2L:15894567-15894687 1.0000 120 chr3L:12488547-12488667 1.0000 120 chr2L:2621523-2621643 1.0000 120 chr3R:24873343-24873463 1.0000 120 chrX:19100029-19100149 1.0000 120 chr2L:5339301-5339421 1.0000 120 chr3R:18903318-18903438 1.0000 120 chr2R:15115572-15115692 1.0000 120 chr2L:17210159-17210279 1.0000 120 chr2R:19654991-19655111 1.0000 120 chrX:659284-659404 1.0000 120 chrX:5513383-5513503 1.0000 120 chrX:974383-974503 1.0000 120 chr2R:7138089-7138209 1.0000 120 chrX:11677669-11677789 1.0000 120 chr3L:4578203-4578323 1.0000 120 chr3L:19457042-19457162 1.0000 120 chr3R:28804317-28804437 1.0000 120 chr2R:20739016-20739136 1.0000 120 chr2L:13986795-13986915 1.0000 120 chr3L:2216877-2216997 1.0000 120 chrX:13670140-13670260 1.0000 120 chr2R:17876216-17876336 1.0000 120 chr3R:18566994-18567114 1.0000 120 chr3R:9114399-9114519 1.0000 120 chr3L:15809660-15809780 1.0000 120 chr2L:14107282-14107402 1.0000 120 chr3R:21988290-21988410 1.0000 120 chr2R:16620187-16620307 1.0000 120 chr2R:19003984-19004104 1.0000 120 chr2L:3732570-3732690 1.0000 120 chrX:4334582-4334702 1.0000 120 chr3R:10964514-10964634 1.0000 120 chr3L:6023331-6023451 1.0000 120 chr2R:16389868-16389988 1.0000 120 chr3L:6541976-6542096 1.0000 120 chr2R:11008951-11009071 1.0000 120 chr2L:4106219-4106339 1.0000 120 chr3R:29475670-29475790 1.0000 120 chrX:10063751-10063871 1.0000 120 chr2R:16877944-16878064 1.0000 120 chr2L:14941385-14941505 1.0000 120 chr3L:1004742-1004862 1.0000 120 chrX:1019082-1019202 1.0000 120 chr2R:18766959-18767079 1.0000 120 chrX:7630007-7630127 1.0000 120 chr3R:27082468-27082588 1.0000 120 chr3R:26581860-26581980 1.0000 120 chr2R:16891746-16891866 1.0000 120 chr3L:12893539-12893659 1.0000 120 chrX:14682461-14682581 1.0000 120 chr3L:12359407-12359527 1.0000 120 chrX:4042220-4042340 1.0000 120 chr2L:2812592-2812712 1.0000 120 chr3L:6247585-6247705 1.0000 120 chr2L:9256918-9257038 1.0000 120 chrX:11732498-11732618 1.0000 120 chr3L:22917588-22917708 1.0000 120 chr3L:16222839-16222959 1.0000 120 chr3R:13732321-13732441 1.0000 120 chr2L:18109478-18109598 1.0000 120 chr3R:11320884-11321004 1.0000 120 chr2R:17370014-17370134 1.0000 120 chrX:12270858-12270978 1.0000 120 chr2L:4904268-4904388 1.0000 120 chr3L:21144138-21144258 1.0000 120 chr3R:17371669-17371789 1.0000 120 chr2R:9725497-9725617 1.0000 120 chr3L:8607916-8608036 1.0000 120 chr3L:9907405-9907525 1.0000 120 chr3L:9774719-9774839 1.0000 120 chr2R:22958202-22958322 1.0000 120 chr3L:10719504-10719624 1.0000 120 chr3R:16068071-16068191 1.0000 120 chr2R:9182869-9182989 1.0000 120 chr3R:24442425-24442545 1.0000 120 chr3L:15647125-15647245 1.0000 120 chr3R:26773784-26773904 1.0000 120 chr2R:19069608-19069728 1.0000 120 chr3R:28804891-28805011 1.0000 120 chrX:13034808-13034928 1.0000 120 chr3L:2184933-2185053 1.0000 120 chr3R:17530223-17530343 1.0000 120 chr2R:21415228-21415348 1.0000 120 chr2R:9790146-9790266 1.0000 120 chr3R:31268795-31268915 1.0000 120 chr2L:10807814-10807934 1.0000 120 chrX:15559657-15559777 1.0000 120 chr2L:1089711-1089831 1.0000 120 chr2L:2266211-2266331 1.0000 120 chr2L:9403890-9404010 1.0000 120 chr3L:10865676-10865796 1.0000 120 chr2L:16542919-16543039 1.0000 120 chr2L:10692014-10692134 1.0000 120 chr3L:2714305-2714425 1.0000 120 chr2L:15932826-15932946 1.0000 120 chr2L:13491315-13491435 1.0000 120 chr3R:21816210-21816330 1.0000 120 chr3L:3919713-3919833 1.0000 120 chr3R:25241498-25241618 1.0000 120 chr2L:15577216-15577336 1.0000 120 chr3L:1630096-1630216 1.0000 120 chr3R:9116451-9116571 1.0000 120 chr2R:21439392-21439512 1.0000 120 chr2L:8601856-8601976 1.0000 120 chr3R:18258499-18258619 1.0000 120 chr3L:21427616-21427736 1.0000 120 chrX:11370782-11370902 1.0000 120 chr3L:15056957-15057077 1.0000 120 chr3L:16292754-16292874 1.0000 120 chr3R:11515368-11515488 1.0000 120 chr3L:9571672-9571792 1.0000 120 chrX:17441440-17441560 1.0000 120 chr2L:3756127-3756247 1.0000 120 chr3R:15168862-15168982 1.0000 120 chr2R:19209306-19209426 1.0000 120 chr3L:22319877-22319997 1.0000 120 chr2R:12092898-12093018 1.0000 120 chr3L:21360296-21360416 1.0000 120 chr3L:13362727-13362847 1.0000 120 chr3R:28804049-28804169 1.0000 120 chr3L:1927932-1928052 1.0000 120 chr3R:30898997-30899117 1.0000 120 chrX:9949773-9949893 1.0000 120 chr2R:23441798-23441918 1.0000 120 chrX:18171613-18171733 1.0000 120 chr2L:9661182-9661302 1.0000 120 chr3R:22311025-22311145 1.0000 120 chrX:11233406-11233526 1.0000 120 chr2L:12769239-12769359 1.0000 120 chr3R:29645825-29645945 1.0000 120 chr2L:7904567-7904687 1.0000 120 chr3R:17897023-17897143 1.0000 120 chr3R:22864527-22864647 1.0000 120 chr3R:25508494-25508614 1.0000 120 chr3L:17082510-17082630 1.0000 120 chr3R:15376678-15376798 1.0000 120 chr3L:7056166-7056286 1.0000 120 chr3L:13991970-13992090 1.0000 120 chr2R:21596867-21596987 1.0000 120 chr2R:7852462-7852582 1.0000 120 chrX:8228337-8228457 1.0000 120 chr3R:13239774-13239894 1.0000 120 chr2L:2075399-2075519 1.0000 120 chr3R:22284943-22285063 1.0000 120 chr2L:4425282-4425402 1.0000 120 chr2L:10560374-10560494 1.0000 120 chr2L:9547074-9547194 1.0000 120 chr3R:27628284-27628404 1.0000 120 chr3L:11642078-11642198 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_suHw/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/suHw.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.242 G 0.236 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.242 G 0.236 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAGTATGC MEME-1 width = 8 sites = 74 llr = 662 E-value = 1.4e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A a9::8::: pos.-specific C :::::::a probability G ::9:11a: matrix T :11a:9:: bits 2.1 1.9 * ** 1.7 * * ** 1.5 ** * *** Relative 1.3 ******** Entropy 1.0 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGTATGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22284943-22285063 72 1.61e-05 TGCCCCCGAA AAGTATGC AGCATGCAGC chr2L:3756127-3756247 23 1.61e-05 CCCACCCCGA AAGTATGC CATAGGAAAT chr3R:11515368-11515488 82 1.61e-05 CGCTGGCTGC AAGTAtgc atgtggatgt chr2L:15932826-15932946 24 1.61e-05 TGTAGCGCGA AAGTATGC AACACGAAAT chr2L:1089711-1089831 39 1.61e-05 CTGCGCTCAC AAGTATGC AACGAAATTT chrX:15559657-15559777 42 1.61e-05 ATGCGTCGAA AAGTATGC TATAAATTTT chr3R:31268795-31268915 71 1.61e-05 GTTAACTTCA AAGTATGC AACACTCTTA chr3L:15647125-15647245 13 1.61e-05 GGCAGCCTAA AAGTATGC AAACGAGCCC chr3R:24442425-24442545 93 1.61e-05 TTGCCCCATA AAGTATGC TACAAATTTT chrX:12270858-12270978 2 1.61e-05 A AAGTATGC AACATTTTTT chr2R:17370014-17370134 35 1.61e-05 AGCCCCCAAA AAGTATGC TACACTTTTA chrX:4042220-4042340 75 1.61e-05 TGGCCCAAAA AAGTATGC TACAACAAAG chr3L:12359407-12359527 84 1.61e-05 GTGCCCTAAA AAGTATGC TATACTTTCC chrX:14682461-14682581 86 1.61e-05 GCCAGCCCAA AAGTATGC TGGAGTCTGT chrX:10063751-10063871 70 1.61e-05 GCTCGCCGAA AAGTATGC AACACCCCCT chr3R:29475670-29475790 39 1.61e-05 ACGCCCTCAT AAGTATGC AGCAATATTT chr3L:6541976-6542096 99 1.61e-05 AACACCTGAA AAGTATGC AATGAAAATT chr3R:9114399-9114519 98 1.61e-05 TGGCACCGCA AAGTATGC AACATTTATT chr2R:20739016-20739136 10 1.61e-05 GGCCCCAAA AAGTATGC CATGTTTTGT chr3L:19457042-19457162 39 1.61e-05 CGGCGCACTA AAGTATGC AACACAATTG chr3L:4578203-4578323 39 1.61e-05 GAGCGCACCT AAGTATGC TACAGTTTTT chr2R:19654991-19655111 99 1.61e-05 CGCTGCCTGT AAGTATGC AATGCTTTTC chr2L:2621523-2621643 8 1.61e-05 CGCATAA AAGTATGC TACGTTTTTG chr3R:27618585-27618705 36 1.61e-05 GCCACCCCGA AAGTATGC AACGCAATGT chr3R:15030509-15030629 39 1.61e-05 GCAAGCTGAA AAGTATGC TACATCGAGC chr3L:21874453-21874573 37 1.61e-05 CAGCGCAGCA AAGTATGC AACACAAATT chr2L:1527552-1527672 24 1.61e-05 ACCAGCCGAA AAGTATGC AACTGCACAC chr2L:8808026-8808146 108 1.61e-05 ATGCGCCCCA AAGTATGC AATGC chr3R:23235463-23235583 46 1.61e-05 TAGCCCCATT AAGTATGC AACAGAAACT chr3R:13520219-13520339 18 1.61e-05 GAGCCCCAAA AAGTATGC TGTGCTTTTT chr3R:22349912-22350032 92 1.61e-05 CTGAGCCGAA AAGTATGC AACAATAAAT chr2L:12987212-12987332 73 1.61e-05 CGTAGCCGAA AAGTATGC TATTGAAATA chr2R:22229453-22229573 71 1.61e-05 GCCCGCCTGT AAGTATGC TATATATATA chr2R:17297958-17298078 93 1.61e-05 TACCCCCGGA AAGTATGC AACACTTTAA chr3L:2316211-2316331 42 1.61e-05 AAACTCCCGG AAGTATGC TTCAGTTCTA chrX:2773617-2773737 98 1.61e-05 CAGCGCTGAA AAGTATGC TACACTGTTT chr2R:18480195-18480315 42 1.61e-05 CTCAGCCGAA AAGTATGC CACAGAATTT chr2R:16036862-16036982 76 1.61e-05 TTGCCCCAGT AAGTATGC TACACATTTC chr3R:18518522-18518642 82 3.08e-05 gtgtctgaat aagtgtgc gtgtgtgtgt chr3R:22864527-22864647 47 4.51e-05 GTGCCCTTAA AAGTAGGC TATGCTTTTT chr3R:29645825-29645945 98 4.51e-05 TTGCCCCGTG AAGTAGGC AACACAATTT chr2L:9661182-9661302 95 4.51e-05 CACCGCCTAG AAGTAGGC AACTGTTTTC chr3R:15168862-15168982 42 4.51e-05 GCAGCCCCAA AAGTAGGC AACGCTTTTT chr3R:25378633-25378753 13 4.51e-05 CAGCCCACAA AAGTAGGC AACATATTTT chrX:10453709-10453829 30 4.51e-05 TGCCGCCGAT AAGTAGGC AACACTTAAT chr3R:9116451-9116571 27 6.17e-05 GAGCCCCATA ATGTATGC TACGCTCTAG chr2R:19315553-19315673 86 6.17e-05 CTGCCCCGAA ATGTATGC TAATGTATGG chr2R:14579276-14579396 17 6.17e-05 ACTACATTTT ATGTATGC AGCTGCCTTT chrX:11233406-11233526 25 7.97e-05 GTTTGCAGCT AATTATGC GAGTGTCTCC chr2L:18109478-18109598 103 7.97e-05 ATTTGGAAAT AATTATGC GAGTGGCAGA chr3L:6023331-6023451 20 7.97e-05 TGTCGCCTTA AATTATGC CACAAAAAAT chr2R:15004513-15004633 86 7.97e-05 ATAAGCGCGT AATTATGC GAATTAGGCG chrX:13548496-13548616 96 7.97e-05 GCACGCCGCA AATTATGC TATGAACTCG chr3L:13362727-13362847 23 1.13e-04 ACCCATAAAG AAGAATGC GAAGCATACT chr3L:2184933-2185053 78 1.13e-04 TGTGGTAAAT AAGAATGC ACTTAGCGTC chr3L:1004742-1004862 99 1.13e-04 GTACAAGCCA AAGAATGC GTGTTTGCTT chr2R:16620187-16620307 102 1.13e-04 CTCAGTCATA AAATATGC ACAAATATTT chrX:13527307-13527427 39 1.13e-04 CTCAGCCCGA AAATATGC CATTAGCCGG chr3L:17784303-17784423 37 1.13e-04 TACCGCCTGC AAATATGC AGTTCTTTTT chr2L:5339301-5339421 51 1.26e-04 GGGCACCTTG AAGTGGGC CAGCTTGCCC chr2L:16138718-16138838 80 1.26e-04 TTGCATACTT AAGTGGGC ACAGTCTTCA chr2L:9873476-9873596 20 1.26e-04 CATTTCGCTG AAGTGGGC GAGAGGGGTG chrX:11370782-11370902 100 1.41e-04 GTGTGTGAGC ATGTGTGC GTATGTCAGT chr3R:17371669-17371789 45 1.41e-04 GCTGCtgttt atgtgtgc tgtgtgtgag chr3R:13732321-13732441 35 1.41e-04 TAATGGCTTA ATGTGTGC ATGTGCCGCT chr2L:14941385-14941505 77 1.41e-04 ATTTAATTAT ATGTGTGC CCAGGCCGAG chr3R:21988290-21988410 30 1.41e-04 CTGTGTGCTT ATGTGTGC GTTGCATACT chr3R:27628284-27628404 28 1.56e-04 GCGCGCCGAA ATGTAGGC TAAGCTTTTG chr2R:7852462-7852582 27 1.72e-04 AAAAGAGAAA AATTGTGC TGCATACTTT chr2R:11133202-11133322 44 1.72e-04 TGGACAATGG AATTGTGC ATAAATTGGG chr2R:22958202-22958322 40 2.07e-04 GCAGTGAATT ATTTATGC CAACTTGACA chr3R:22311025-22311145 69 2.24e-04 CGGTTAGAAC AAGTTTGC CAGCCTGCAT chr2L:5635336-5635456 25 2.41e-04 TGGCACCTAA AAGTATAC AGCATTTTCC chr3R:25241498-25241618 39 2.59e-04 GACCGCCTGA AAGTATGT GTTATTCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22284943-22285063 1.6e-05 71_[+1]_41 chr2L:3756127-3756247 1.6e-05 22_[+1]_90 chr3R:11515368-11515488 1.6e-05 81_[+1]_31 chr2L:15932826-15932946 1.6e-05 23_[+1]_89 chr2L:1089711-1089831 1.6e-05 38_[+1]_74 chrX:15559657-15559777 1.6e-05 41_[+1]_71 chr3R:31268795-31268915 1.6e-05 70_[+1]_42 chr3L:15647125-15647245 1.6e-05 12_[+1]_100 chr3R:24442425-24442545 1.6e-05 92_[+1]_20 chrX:12270858-12270978 1.6e-05 1_[+1]_111 chr2R:17370014-17370134 1.6e-05 34_[+1]_78 chrX:4042220-4042340 1.6e-05 74_[+1]_38 chr3L:12359407-12359527 1.6e-05 83_[+1]_29 chrX:14682461-14682581 1.6e-05 85_[+1]_27 chrX:10063751-10063871 1.6e-05 69_[+1]_43 chr3R:29475670-29475790 1.6e-05 38_[+1]_74 chr3L:6541976-6542096 1.6e-05 98_[+1]_14 chr3R:9114399-9114519 1.6e-05 97_[+1]_15 chr2R:20739016-20739136 1.6e-05 9_[+1]_103 chr3L:19457042-19457162 1.6e-05 38_[+1]_74 chr3L:4578203-4578323 1.6e-05 38_[+1]_74 chr2R:19654991-19655111 1.6e-05 98_[+1]_14 chr2L:2621523-2621643 1.6e-05 7_[+1]_105 chr3R:27618585-27618705 1.6e-05 35_[+1]_77 chr3R:15030509-15030629 1.6e-05 38_[+1]_74 chr3L:21874453-21874573 1.6e-05 36_[+1]_76 chr2L:1527552-1527672 1.6e-05 23_[+1]_89 chr2L:8808026-8808146 1.6e-05 107_[+1]_5 chr3R:23235463-23235583 1.6e-05 45_[+1]_67 chr3R:13520219-13520339 1.6e-05 17_[+1]_95 chr3R:22349912-22350032 1.6e-05 91_[+1]_21 chr2L:12987212-12987332 1.6e-05 72_[+1]_40 chr2R:22229453-22229573 1.6e-05 70_[+1]_42 chr2R:17297958-17298078 1.6e-05 92_[+1]_20 chr3L:2316211-2316331 1.6e-05 41_[+1]_71 chrX:2773617-2773737 1.6e-05 97_[+1]_15 chr2R:18480195-18480315 1.6e-05 41_[+1]_71 chr2R:16036862-16036982 1.6e-05 75_[+1]_37 chr3R:18518522-18518642 3.1e-05 81_[+1]_31 chr3R:22864527-22864647 4.5e-05 46_[+1]_66 chr3R:29645825-29645945 4.5e-05 97_[+1]_15 chr2L:9661182-9661302 4.5e-05 94_[+1]_18 chr3R:15168862-15168982 4.5e-05 41_[+1]_71 chr3R:25378633-25378753 4.5e-05 12_[+1]_100 chrX:10453709-10453829 4.5e-05 29_[+1]_83 chr3R:9116451-9116571 6.2e-05 26_[+1]_86 chr2R:19315553-19315673 6.2e-05 85_[+1]_27 chr2R:14579276-14579396 6.2e-05 16_[+1]_96 chrX:11233406-11233526 8e-05 24_[+1]_88 chr2L:18109478-18109598 8e-05 102_[+1]_10 chr3L:6023331-6023451 8e-05 19_[+1]_93 chr2R:15004513-15004633 8e-05 85_[+1]_27 chrX:13548496-13548616 8e-05 95_[+1]_17 chr3L:13362727-13362847 0.00011 22_[+1]_90 chr3L:2184933-2185053 0.00011 77_[+1]_35 chr3L:1004742-1004862 0.00011 98_[+1]_14 chr2R:16620187-16620307 0.00011 101_[+1]_11 chrX:13527307-13527427 0.00011 38_[+1]_74 chr3L:17784303-17784423 0.00011 36_[+1]_76 chr2L:5339301-5339421 0.00013 50_[+1]_62 chr2L:16138718-16138838 0.00013 79_[+1]_33 chr2L:9873476-9873596 0.00013 19_[+1]_93 chrX:11370782-11370902 0.00014 99_[+1]_13 chr3R:17371669-17371789 0.00014 44_[+1]_68 chr3R:13732321-13732441 0.00014 34_[+1]_78 chr2L:14941385-14941505 0.00014 76_[+1]_36 chr3R:21988290-21988410 0.00014 29_[+1]_83 chr3R:27628284-27628404 0.00016 27_[+1]_85 chr2R:7852462-7852582 0.00017 26_[+1]_86 chr2R:11133202-11133322 0.00017 43_[+1]_69 chr2R:22958202-22958322 0.00021 39_[+1]_73 chr3R:22311025-22311145 0.00022 68_[+1]_44 chr2L:5635336-5635456 0.00024 24_[+1]_88 chr3R:25241498-25241618 0.00026 38_[+1]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGTATGC width=8 seqs=74 chr3R:22284943-22285063 ( 72) AAGTATGC 1 chr2L:3756127-3756247 ( 23) AAGTATGC 1 chr3R:11515368-11515488 ( 82) AAGTATGC 1 chr2L:15932826-15932946 ( 24) AAGTATGC 1 chr2L:1089711-1089831 ( 39) AAGTATGC 1 chrX:15559657-15559777 ( 42) AAGTATGC 1 chr3R:31268795-31268915 ( 71) AAGTATGC 1 chr3L:15647125-15647245 ( 13) AAGTATGC 1 chr3R:24442425-24442545 ( 93) AAGTATGC 1 chrX:12270858-12270978 ( 2) AAGTATGC 1 chr2R:17370014-17370134 ( 35) AAGTATGC 1 chrX:4042220-4042340 ( 75) AAGTATGC 1 chr3L:12359407-12359527 ( 84) AAGTATGC 1 chrX:14682461-14682581 ( 86) AAGTATGC 1 chrX:10063751-10063871 ( 70) AAGTATGC 1 chr3R:29475670-29475790 ( 39) AAGTATGC 1 chr3L:6541976-6542096 ( 99) AAGTATGC 1 chr3R:9114399-9114519 ( 98) AAGTATGC 1 chr2R:20739016-20739136 ( 10) AAGTATGC 1 chr3L:19457042-19457162 ( 39) AAGTATGC 1 chr3L:4578203-4578323 ( 39) AAGTATGC 1 chr2R:19654991-19655111 ( 99) AAGTATGC 1 chr2L:2621523-2621643 ( 8) AAGTATGC 1 chr3R:27618585-27618705 ( 36) AAGTATGC 1 chr3R:15030509-15030629 ( 39) AAGTATGC 1 chr3L:21874453-21874573 ( 37) AAGTATGC 1 chr2L:1527552-1527672 ( 24) AAGTATGC 1 chr2L:8808026-8808146 ( 108) AAGTATGC 1 chr3R:23235463-23235583 ( 46) AAGTATGC 1 chr3R:13520219-13520339 ( 18) AAGTATGC 1 chr3R:22349912-22350032 ( 92) AAGTATGC 1 chr2L:12987212-12987332 ( 73) AAGTATGC 1 chr2R:22229453-22229573 ( 71) AAGTATGC 1 chr2R:17297958-17298078 ( 93) AAGTATGC 1 chr3L:2316211-2316331 ( 42) AAGTATGC 1 chrX:2773617-2773737 ( 98) AAGTATGC 1 chr2R:18480195-18480315 ( 42) AAGTATGC 1 chr2R:16036862-16036982 ( 76) AAGTATGC 1 chr3R:18518522-18518642 ( 82) AAGTGTGC 1 chr3R:22864527-22864647 ( 47) AAGTAGGC 1 chr3R:29645825-29645945 ( 98) AAGTAGGC 1 chr2L:9661182-9661302 ( 95) AAGTAGGC 1 chr3R:15168862-15168982 ( 42) AAGTAGGC 1 chr3R:25378633-25378753 ( 13) AAGTAGGC 1 chrX:10453709-10453829 ( 30) AAGTAGGC 1 chr3R:9116451-9116571 ( 27) ATGTATGC 1 chr2R:19315553-19315673 ( 86) ATGTATGC 1 chr2R:14579276-14579396 ( 17) ATGTATGC 1 chrX:11233406-11233526 ( 25) AATTATGC 1 chr2L:18109478-18109598 ( 103) AATTATGC 1 chr3L:6023331-6023451 ( 20) AATTATGC 1 chr2R:15004513-15004633 ( 86) AATTATGC 1 chrX:13548496-13548616 ( 96) AATTATGC 1 chr3L:13362727-13362847 ( 23) AAGAATGC 1 chr3L:2184933-2185053 ( 78) AAGAATGC 1 chr3L:1004742-1004862 ( 99) AAGAATGC 1 chr2R:16620187-16620307 ( 102) AAATATGC 1 chrX:13527307-13527427 ( 39) AAATATGC 1 chr3L:17784303-17784423 ( 37) AAATATGC 1 chr2L:5339301-5339421 ( 51) AAGTGGGC 1 chr2L:16138718-16138838 ( 80) AAGTGGGC 1 chr2L:9873476-9873596 ( 20) AAGTGGGC 1 chrX:11370782-11370902 ( 100) ATGTGTGC 1 chr3R:17371669-17371789 ( 45) ATGTGTGC 1 chr3R:13732321-13732441 ( 35) ATGTGTGC 1 chr2L:14941385-14941505 ( 77) ATGTGTGC 1 chr3R:21988290-21988410 ( 30) ATGTGTGC 1 chr3R:27628284-27628404 ( 28) ATGTAGGC 1 chr2R:7852462-7852582 ( 27) AATTGTGC 1 chr2R:11133202-11133322 ( 44) AATTGTGC 1 chr2R:22958202-22958322 ( 40) ATTTATGC 1 chr3R:22311025-22311145 ( 69) AAGTTTGC 1 chr2L:5635336-5635456 ( 25) AAGTATAC 1 chr3R:25241498-25241618 ( 39) AAGTATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.44762 E= 1.4e-052 196 -1285 -1285 -1285 175 -1285 -1285 -97 -266 -1285 185 -129 -266 -1285 -1285 186 170 -1285 -66 -429 -1285 -1285 -80 171 -425 -1285 207 -1285 -1285 202 -1285 -429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 1.4e-052 1.000000 0.000000 0.000000 0.000000 0.864865 0.000000 0.000000 0.135135 0.040541 0.000000 0.851351 0.108108 0.040541 0.000000 0.000000 0.959459 0.837838 0.000000 0.148649 0.013514 0.000000 0.000000 0.135135 0.864865 0.013514 0.000000 0.986486 0.000000 0.000000 0.986486 0.000000 0.013514 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGTATGC MEME-1 regular expression -------------------------------------------------------------------------------- AAGTATGC -------------------------------------------------------------------------------- Time 7.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GCATACTT MEME-2 width = 8 sites = 60 llr = 583 E-value = 5.3e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9:911: pos.-specific C :a1::9:: probability G a:::1::: matrix T :::a::9a bits 2.1 * 1.9 ** * * 1.7 ** ** ** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCATACTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10560374-10560494 105 1.70e-05 TAAAAACTTT GCATACTT TGTGGCGT chr2R:7852462-7852582 36 1.70e-05 AAATTGTGCT GCATACTT TCAGGCCGCA chr3L:13362727-13362847 34 1.70e-05 AGAATGCGAA GCATACTT TTTGGGGCTG chr3L:22319877-22319997 100 1.70e-05 CGTTTGGGTA GCATACTT TTCTGCGTTT chrX:11370782-11370902 49 1.70e-05 CCTTTTTGCT GCATACTT TTCTGGGTTC chr2L:8601856-8601976 41 1.70e-05 ATAGGGCTTA GCATACTT TCGGGGGCGA chr2R:21439392-21439512 75 1.70e-05 AGAAAACGCT GCATACTT TCAGGCGCCG chr2L:15577216-15577336 17 1.70e-05 TTTGCATGTT GCATACTT CACGGCGTAG chr3R:21816210-21816330 73 1.70e-05 TGTACTCGTA GCATACTT TTCAGCGCAG chr2L:10692014-10692134 13 1.70e-05 ACTTATTGTC GCATACTT TGAGGCAACG chr2L:18109478-18109598 67 1.70e-05 CACTTTCGCT GCATACTT TTCGGGGCCG chr2L:9256918-9257038 108 1.70e-05 AGTTCGCATT GCATACTT TTTGG chr2R:16891746-16891866 112 1.70e-05 TTTTGTCGCT GCATACTT T chrX:1019082-1019202 75 1.70e-05 GAAAAACGTA GCATACTT TGCAGGGCCA chr2R:11008951-11009071 111 1.70e-05 GTTTATGTTT GCATACTT TC chr2R:16389868-16389988 13 1.70e-05 GCCAAGCGTA GCATACTT TTGTGCGCCG chr2L:3732570-3732690 56 1.70e-05 GTTTTCCGTG GCATACTT TTGGGCGAAC chr3R:21988290-21988410 41 1.70e-05 TGTGTGCGTT GCATACTT TTTGGCTGCC chr3R:18566994-18567114 10 1.70e-05 GAACGTGTT GCATACTT TGCGGCTGCA chr2R:17876216-17876336 111 1.70e-05 TTCCAGCGTT GCATACTT TG chrX:5513383-5513503 5 1.70e-05 CGTA GCATACTT TCAGGCTCTT chrX:19100029-19100149 89 1.70e-05 TATTTGTATA GCATACTT TTTTGCGTAG chr2L:15894567-15894687 103 1.70e-05 AAAATTGATT GCATACTT TGCGGCGCAC chr3R:7290442-7290562 13 1.70e-05 GGAGAGCGTA GCATACTT TTAGGCATGC chr3R:25570622-25570742 36 1.70e-05 GCAGTTTGGT GCATACTT TTAGGCGCAA chr2L:3094325-3094445 104 1.70e-05 AAATAATGCG GCATACTT TCAGGCAAC chr2L:16138718-16138838 72 1.70e-05 ATTTTGTGTT GCATACTT AAGTGGGCAC chr3R:21997323-21997443 29 1.70e-05 ACTTACTGTA GCATACTT AACGGGGCAG chr3R:20683649-20683769 62 1.70e-05 AAAAAGTGAA GCATACTT TCAGGCTTGT chr2R:8554303-8554423 99 1.70e-05 CAAATTTATT GCATACTT TTGTGCGTGC chr2R:14995960-14996080 9 1.70e-05 CAATCACT GCATACTT GCAGGTGCAG chrX:9915949-9916069 88 1.70e-05 GGAGTGTGTT GCATACTT TTCGGCTGGC chr3R:16192455-16192575 55 1.70e-05 GGGAAGAATA GCATACTT TCAGGTGCAG chrX:18322548-18322668 74 1.70e-05 AATTTGCGTT GCATACTT CGAGGCGGCG chr2R:9924265-9924385 80 1.70e-05 CTGTTTTGTA GCATACTT ATCAGCGTCT chr3L:17254697-17254817 31 1.70e-05 AAAAAGCATA GCATACTT CTGAGCGCAA chr2L:6783465-6783585 88 1.70e-05 GGGGCCTATA GCATACTT TGCGGCATTT chr2R:12446004-12446124 43 1.70e-05 AGGTCTTGTT GCATACTT TCGAGCGCAA chr3R:12321382-12321502 85 1.70e-05 GCAAAGTGTT GCATACTT TCGGGCGCTT chrX:8222851-8222971 13 1.70e-05 GAATGGCAGT GCATACTT CTAGGCTGGT chrX:11233406-11233526 103 3.30e-05 AAAAAGTGTT GCCTACTT ATGAGGGCAT chr3L:8607916-8608036 74 3.30e-05 AAAAAGCATT GCCTACTT TTGTGGGCCC chr3R:18903318-18903438 16 3.30e-05 AAATTTTGTT GCCTACTT TGGGGGGCAC chr3R:27028217-27028337 108 3.30e-05 GTGGTCTAGT GCCTACTT TAAGA chr2R:7887204-7887324 85 3.30e-05 TTTTATCGTT GCCTACTT TCAGGCAGCC chr3L:2184933-2185053 53 4.86e-05 AAAATGTGTA GCATGCTT TTGGGCTTGT chrX:7630007-7630127 66 4.86e-05 AAAAATAGTA GCATGCTT TTAGGTGCTA chr3R:14971493-14971613 86 4.86e-05 TGTCGCTCTT GCATGCTT GTTTAAATTT chr2L:18845925-18846045 101 4.86e-05 AAAAATCGTA GCATGCTT TCCAGCGTTT chr2L:12769239-12769359 8 6.51e-05 ATATGCT GCATACAT TTAGGCGCCG chr2R:19209306-19209426 77 6.51e-05 GAAAAGTGTA GCATACAT TACGGGGCAA chr3R:17530223-17530343 46 6.51e-05 GGAAAACATA GCATACAT TTCGGCTGTT chrX:18727002-18727122 74 6.51e-05 GGATAGCATA GCATACAT TCGGGGGCAA chr3R:17764451-17764571 106 8.31e-05 AAATGGCCGG GCATAATT GGTGTCC chr3R:23235463-23235583 93 8.31e-05 TTTGCACTTT GCATAATT CTGCTATTCA chr2R:22952353-22952473 1 8.31e-05 . GCATAATT TTAGGCATAA chr3L:4086585-4086705 43 1.01e-04 AGAACCCTAG GAATACTT GCCGCAAAAG chr3R:6302690-6302810 36 1.01e-04 GCCAGGCCTT GAATACTT TTAGGAGCAT chr2L:13491315-13491435 46 1.20e-04 AAATTATGTA GCATATTT TTCAGCGCTT chr2L:5635336-5635456 76 1.20e-04 AAAATGCAGG GCATATTT AGCATGGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10560374-10560494 1.7e-05 104_[+2]_8 chr2R:7852462-7852582 1.7e-05 35_[+2]_77 chr3L:13362727-13362847 1.7e-05 33_[+2]_79 chr3L:22319877-22319997 1.7e-05 99_[+2]_13 chrX:11370782-11370902 1.7e-05 48_[+2]_64 chr2L:8601856-8601976 1.7e-05 40_[+2]_72 chr2R:21439392-21439512 1.7e-05 74_[+2]_38 chr2L:15577216-15577336 1.7e-05 16_[+2]_96 chr3R:21816210-21816330 1.7e-05 72_[+2]_40 chr2L:10692014-10692134 1.7e-05 12_[+2]_100 chr2L:18109478-18109598 1.7e-05 66_[+2]_46 chr2L:9256918-9257038 1.7e-05 107_[+2]_5 chr2R:16891746-16891866 1.7e-05 111_[+2]_1 chrX:1019082-1019202 1.7e-05 74_[+2]_38 chr2R:11008951-11009071 1.7e-05 110_[+2]_2 chr2R:16389868-16389988 1.7e-05 12_[+2]_100 chr2L:3732570-3732690 1.7e-05 55_[+2]_57 chr3R:21988290-21988410 1.7e-05 40_[+2]_72 chr3R:18566994-18567114 1.7e-05 9_[+2]_103 chr2R:17876216-17876336 1.7e-05 110_[+2]_2 chrX:5513383-5513503 1.7e-05 4_[+2]_108 chrX:19100029-19100149 1.7e-05 88_[+2]_24 chr2L:15894567-15894687 1.7e-05 102_[+2]_10 chr3R:7290442-7290562 1.7e-05 12_[+2]_100 chr3R:25570622-25570742 1.7e-05 35_[+2]_77 chr2L:3094325-3094445 1.7e-05 103_[+2]_9 chr2L:16138718-16138838 1.7e-05 71_[+2]_41 chr3R:21997323-21997443 1.7e-05 28_[+2]_84 chr3R:20683649-20683769 1.7e-05 61_[+2]_51 chr2R:8554303-8554423 1.7e-05 98_[+2]_14 chr2R:14995960-14996080 1.7e-05 8_[+2]_104 chrX:9915949-9916069 1.7e-05 87_[+2]_25 chr3R:16192455-16192575 1.7e-05 54_[+2]_58 chrX:18322548-18322668 1.7e-05 73_[+2]_39 chr2R:9924265-9924385 1.7e-05 79_[+2]_33 chr3L:17254697-17254817 1.7e-05 30_[+2]_82 chr2L:6783465-6783585 1.7e-05 87_[+2]_25 chr2R:12446004-12446124 1.7e-05 42_[+2]_70 chr3R:12321382-12321502 1.7e-05 84_[+2]_28 chrX:8222851-8222971 1.7e-05 12_[+2]_100 chrX:11233406-11233526 3.3e-05 102_[+2]_10 chr3L:8607916-8608036 3.3e-05 73_[+2]_39 chr3R:18903318-18903438 3.3e-05 15_[+2]_97 chr3R:27028217-27028337 3.3e-05 107_[+2]_5 chr2R:7887204-7887324 3.3e-05 84_[+2]_28 chr3L:2184933-2185053 4.9e-05 52_[+2]_60 chrX:7630007-7630127 4.9e-05 65_[+2]_47 chr3R:14971493-14971613 4.9e-05 85_[+2]_27 chr2L:18845925-18846045 4.9e-05 100_[+2]_12 chr2L:12769239-12769359 6.5e-05 7_[+2]_105 chr2R:19209306-19209426 6.5e-05 76_[+2]_36 chr3R:17530223-17530343 6.5e-05 45_[+2]_67 chrX:18727002-18727122 6.5e-05 73_[+2]_39 chr3R:17764451-17764571 8.3e-05 105_[+2]_7 chr3R:23235463-23235583 8.3e-05 92_[+2]_20 chr2R:22952353-22952473 8.3e-05 [+2]_112 chr3L:4086585-4086705 0.0001 42_[+2]_70 chr3R:6302690-6302810 0.0001 35_[+2]_77 chr2L:13491315-13491435 0.00012 45_[+2]_67 chr2L:5635336-5635456 0.00012 75_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATACTT width=8 seqs=60 chr2L:10560374-10560494 ( 105) GCATACTT 1 chr2R:7852462-7852582 ( 36) GCATACTT 1 chr3L:13362727-13362847 ( 34) GCATACTT 1 chr3L:22319877-22319997 ( 100) GCATACTT 1 chrX:11370782-11370902 ( 49) GCATACTT 1 chr2L:8601856-8601976 ( 41) GCATACTT 1 chr2R:21439392-21439512 ( 75) GCATACTT 1 chr2L:15577216-15577336 ( 17) GCATACTT 1 chr3R:21816210-21816330 ( 73) GCATACTT 1 chr2L:10692014-10692134 ( 13) GCATACTT 1 chr2L:18109478-18109598 ( 67) GCATACTT 1 chr2L:9256918-9257038 ( 108) GCATACTT 1 chr2R:16891746-16891866 ( 112) GCATACTT 1 chrX:1019082-1019202 ( 75) GCATACTT 1 chr2R:11008951-11009071 ( 111) GCATACTT 1 chr2R:16389868-16389988 ( 13) GCATACTT 1 chr2L:3732570-3732690 ( 56) GCATACTT 1 chr3R:21988290-21988410 ( 41) GCATACTT 1 chr3R:18566994-18567114 ( 10) GCATACTT 1 chr2R:17876216-17876336 ( 111) GCATACTT 1 chrX:5513383-5513503 ( 5) GCATACTT 1 chrX:19100029-19100149 ( 89) GCATACTT 1 chr2L:15894567-15894687 ( 103) GCATACTT 1 chr3R:7290442-7290562 ( 13) GCATACTT 1 chr3R:25570622-25570742 ( 36) GCATACTT 1 chr2L:3094325-3094445 ( 104) GCATACTT 1 chr2L:16138718-16138838 ( 72) GCATACTT 1 chr3R:21997323-21997443 ( 29) GCATACTT 1 chr3R:20683649-20683769 ( 62) GCATACTT 1 chr2R:8554303-8554423 ( 99) GCATACTT 1 chr2R:14995960-14996080 ( 9) GCATACTT 1 chrX:9915949-9916069 ( 88) GCATACTT 1 chr3R:16192455-16192575 ( 55) GCATACTT 1 chrX:18322548-18322668 ( 74) GCATACTT 1 chr2R:9924265-9924385 ( 80) GCATACTT 1 chr3L:17254697-17254817 ( 31) GCATACTT 1 chr2L:6783465-6783585 ( 88) GCATACTT 1 chr2R:12446004-12446124 ( 43) GCATACTT 1 chr3R:12321382-12321502 ( 85) GCATACTT 1 chrX:8222851-8222971 ( 13) GCATACTT 1 chrX:11233406-11233526 ( 103) GCCTACTT 1 chr3L:8607916-8608036 ( 74) GCCTACTT 1 chr3R:18903318-18903438 ( 16) GCCTACTT 1 chr3R:27028217-27028337 ( 108) GCCTACTT 1 chr2R:7887204-7887324 ( 85) GCCTACTT 1 chr3L:2184933-2185053 ( 53) GCATGCTT 1 chrX:7630007-7630127 ( 66) GCATGCTT 1 chr3R:14971493-14971613 ( 86) GCATGCTT 1 chr2L:18845925-18846045 ( 101) GCATGCTT 1 chr2L:12769239-12769359 ( 8) GCATACAT 1 chr2R:19209306-19209426 ( 77) GCATACAT 1 chr3R:17530223-17530343 ( 46) GCATACAT 1 chrX:18727002-18727122 ( 74) GCATACAT 1 chr3R:17764451-17764571 ( 106) GCATAATT 1 chr3R:23235463-23235583 ( 93) GCATAATT 1 chr2R:22952353-22952473 ( 1) GCATAATT 1 chr3L:4086585-4086705 ( 43) GAATACTT 1 chr3R:6302690-6302810 ( 36) GAATACTT 1 chr2L:13491315-13491435 ( 46) GCATATTT 1 chr2L:5635336-5635456 ( 76) GCATATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.55138 E= 5.3e-054 -1255 -1255 209 -1255 -295 200 -1255 -1255 183 -154 -1255 -1255 -1255 -1255 -1255 192 186 -1255 -182 -1255 -236 192 -1255 -299 -195 -1255 -1255 182 -1255 -1255 -1255 192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 5.3e-054 0.000000 0.000000 1.000000 0.000000 0.033333 0.966667 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.933333 0.000000 0.066667 0.000000 0.050000 0.916667 0.000000 0.033333 0.066667 0.000000 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATACTT MEME-2 regular expression -------------------------------------------------------------------------------- GCATACTT -------------------------------------------------------------------------------- Time 13.40 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-3 width = 8 sites = 51 llr = 456 E-value = 1.4e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C ::1::::: probability G :9:82a:a matrix T a:917:a: bits 2.1 * 1.9 * *** 1.7 ** *** 1.5 *** *** Relative 1.3 **** *** Entropy 1.0 **** *** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7852462-7852582 78 1.53e-05 CGTCAgtgtg tgtgtgtg tgtgcgagtg chr2R:21596867-21596987 112 1.53e-05 CGTTCAGCTA TGTGTGTG T chr3L:13991970-13992090 40 1.53e-05 agtgtttgtg tgtgtgtg tttgGCTTTT chr3R:15376678-15376798 36 1.53e-05 TTCgtgggtc tgtgtgtg tgcctgtgtg chr3R:25508494-25508614 83 1.53e-05 tgtgtatgtg tgtgtgtg cgcgtgctct chr3R:22311025-22311145 100 1.53e-05 tgtttttgcg tgtgtgtg gctatgcgac chrX:11370782-11370902 4 1.53e-05 gtg tgtgtgtg GAATTGAGTG chr3R:9116451-9116571 112 1.53e-05 TAGATATGCT tgtgtgtg c chr2L:1089711-1089831 113 1.53e-05 ATGgtgtgtg tgtgtgtg chrX:13034808-13034928 38 1.53e-05 GCtgagtgtg tgtgtgtg tgtgtgtgcg chr3R:17371669-17371789 53 1.53e-05 ttatgtgtgc tgtgtgtg agcgcccgtc chr3R:13732321-13732441 81 1.53e-05 TGTGGCTATG TGTGTGTG TAGCTTTCTG chr2R:16389868-16389988 81 1.53e-05 Ggtgccagtg tgtgtgtg tgtgagtgtg chr2R:7138089-7138209 85 1.53e-05 tgtgtgtgtg tgtgtgtg tgtgtgtAAG chrX:974383-974503 82 1.53e-05 CGGCGGTGGT TGTGTGTG CGGTGTACGA chr3R:22644283-22644403 42 1.53e-05 TTCATAAgtg tgtgtgtg tgtgtttgtc chr2L:11868973-11869093 6 1.53e-05 ATATG TGTGTGTG CCCGACGGAT chr3R:14971493-14971613 42 1.53e-05 tgcgtatgtg tgtgtgtg tgtgtgtAGA chr2L:5635336-5635456 111 1.53e-05 AGTGGGACTT TGTGTGTG TC chr3R:16192455-16192575 38 1.53e-05 AGAATCTCCA TGTGTGTG GGAAGAATAG chr3R:18518522-18518642 97 1.53e-05 tgcgtgtgtg tgtgtgtg tgtgtgcgtt chrX:14322907-14323027 42 1.53e-05 actgctgatg tgtgtgtg tgtgtgcgtg chr3L:22339341-22339461 20 1.53e-05 tgtgattgtg tgtgtgtg tgcgaggatg chr3L:1927932-1928052 87 2.89e-05 tgtgtggatg tgtgggtg agtCCTTGTG chr3L:16292754-16292874 106 2.89e-05 GATGCTGGCG TGTGGGTG TGCGGAT chr3L:21427616-21427736 93 2.89e-05 ATGGCCCGTT TGTGGGTG GTGAGAGTGA chr3L:9907405-9907525 34 2.89e-05 CATCAAAAAG TGTGGGTG TTTGGGACTG chr2R:9725497-9725617 30 2.89e-05 aagtggatgg tgtgggtg gCACAAACTT chrX:14962041-14962161 14 2.89e-05 GGCTTATATT TGTGGGTG AGCAGCGAGG chr3R:22864527-22864647 32 4.61e-05 CTCACTGAGC TGTTTGTG CCCTTAAAAG chr2L:12769239-12769359 87 4.61e-05 ACTGTGCAAA TGTTTGTG CAGCACTAGA chrX:9949773-9949893 28 4.61e-05 GGCCGCCCCT TGTTTGTG CAACACTTGA chrX:13670140-13670260 93 4.61e-05 AACAAAGCGC TGTTTGTG TGAGTCCGac chr2L:8601856-8601976 70 6.09e-05 TGAAATGGTT TGTGAGTG GTGAAGCTGC chr3R:23235463-23235583 75 6.09e-05 CCAGCGAGCA TGTGAGTG TTTGCACTTT chr2R:12446004-12446124 97 6.09e-05 CCCAAGAATT tgtgagtg tgctagtgcg chr3L:21144138-21144258 47 7.49e-05 tcCACTTACA TGCGTGTG CAGGCGCACA chrX:12270858-12270978 47 7.49e-05 CACTCCATTT TGCGTGTG CACAACTTTC chr3R:20337221-20337341 20 7.49e-05 TGCGTTTGCT TGCGTGTG AGAGGCGTGT chr3R:21988290-21988410 11 9.06e-05 TTGTTTTCCA TGTCTGTG ACTGTGTGCT chr2R:21355891-21356011 28 9.06e-05 ACTGCGAGAG TGTCTGTG TGGGAATGGG chr2L:6783465-6783585 67 1.06e-04 CTTTTCGCCG TCTGTGTG CTTGGGGCCT chrX:7630007-7630127 5 1.22e-04 GGTG TGTTGGTG GGAAGCCttg chr2R:14995960-14996080 98 1.22e-04 ttgttgttga tgttggtg ttgttgctgt chr2R:8554303-8554423 108 1.36e-04 TGCATACTTT TGTGCGTG CGAAT chrX:13527307-13527427 85 1.63e-04 AGATGACACT TGAGTGTG GATCTGTTGG chr3L:1630096-1630216 51 2.12e-04 TGCTACACTT TTTGTGTG CTCCTATTTT chr2L:15577216-15577336 109 2.12e-04 TATCTGTATC TGTGTCTG CGGG chr2L:9403890-9404010 4 2.12e-04 AAG TGTGTATG GTCTAAAAGG chr3L:22212547-22212667 75 2.73e-04 AGTGGAGTGG TCTGGGTG TTGGGGTTGG chr2R:16609511-16609631 4 2.86e-04 gtg tgcgagtg tATTATTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7852462-7852582 1.5e-05 77_[+3]_35 chr2R:21596867-21596987 1.5e-05 111_[+3]_1 chr3L:13991970-13992090 1.5e-05 39_[+3]_73 chr3R:15376678-15376798 1.5e-05 35_[+3]_77 chr3R:25508494-25508614 1.5e-05 82_[+3]_30 chr3R:22311025-22311145 1.5e-05 99_[+3]_13 chrX:11370782-11370902 1.5e-05 3_[+3]_109 chr3R:9116451-9116571 1.5e-05 111_[+3]_1 chr2L:1089711-1089831 1.5e-05 112_[+3] chrX:13034808-13034928 1.5e-05 37_[+3]_75 chr3R:17371669-17371789 1.5e-05 52_[+3]_60 chr3R:13732321-13732441 1.5e-05 80_[+3]_32 chr2R:16389868-16389988 1.5e-05 80_[+3]_32 chr2R:7138089-7138209 1.5e-05 84_[+3]_28 chrX:974383-974503 1.5e-05 81_[+3]_31 chr3R:22644283-22644403 1.5e-05 41_[+3]_71 chr2L:11868973-11869093 1.5e-05 5_[+3]_107 chr3R:14971493-14971613 1.5e-05 41_[+3]_71 chr2L:5635336-5635456 1.5e-05 110_[+3]_2 chr3R:16192455-16192575 1.5e-05 37_[+3]_75 chr3R:18518522-18518642 1.5e-05 96_[+3]_16 chrX:14322907-14323027 1.5e-05 41_[+3]_71 chr3L:22339341-22339461 1.5e-05 19_[+3]_93 chr3L:1927932-1928052 2.9e-05 86_[+3]_26 chr3L:16292754-16292874 2.9e-05 105_[+3]_7 chr3L:21427616-21427736 2.9e-05 92_[+3]_20 chr3L:9907405-9907525 2.9e-05 33_[+3]_79 chr2R:9725497-9725617 2.9e-05 29_[+3]_83 chrX:14962041-14962161 2.9e-05 13_[+3]_99 chr3R:22864527-22864647 4.6e-05 31_[+3]_81 chr2L:12769239-12769359 4.6e-05 86_[+3]_26 chrX:9949773-9949893 4.6e-05 27_[+3]_85 chrX:13670140-13670260 4.6e-05 92_[+3]_20 chr2L:8601856-8601976 6.1e-05 69_[+3]_43 chr3R:23235463-23235583 6.1e-05 74_[+3]_38 chr2R:12446004-12446124 6.1e-05 96_[+3]_16 chr3L:21144138-21144258 7.5e-05 46_[+3]_66 chrX:12270858-12270978 7.5e-05 46_[+3]_66 chr3R:20337221-20337341 7.5e-05 19_[+3]_93 chr3R:21988290-21988410 9.1e-05 10_[+3]_102 chr2R:21355891-21356011 9.1e-05 27_[+3]_85 chr2L:6783465-6783585 0.00011 66_[+3]_46 chrX:7630007-7630127 0.00012 4_[+3]_108 chr2R:14995960-14996080 0.00012 97_[+3]_15 chr2R:8554303-8554423 0.00014 107_[+3]_5 chrX:13527307-13527427 0.00016 84_[+3]_28 chr3L:1630096-1630216 0.00021 50_[+3]_62 chr2L:15577216-15577336 0.00021 108_[+3]_4 chr2L:9403890-9404010 0.00021 3_[+3]_109 chr3L:22212547-22212667 0.00027 74_[+3]_38 chr2R:16609511-16609631 0.00029 3_[+3]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=51 chr2R:7852462-7852582 ( 78) TGTGTGTG 1 chr2R:21596867-21596987 ( 112) TGTGTGTG 1 chr3L:13991970-13992090 ( 40) TGTGTGTG 1 chr3R:15376678-15376798 ( 36) TGTGTGTG 1 chr3R:25508494-25508614 ( 83) TGTGTGTG 1 chr3R:22311025-22311145 ( 100) TGTGTGTG 1 chrX:11370782-11370902 ( 4) TGTGTGTG 1 chr3R:9116451-9116571 ( 112) TGTGTGTG 1 chr2L:1089711-1089831 ( 113) TGTGTGTG 1 chrX:13034808-13034928 ( 38) TGTGTGTG 1 chr3R:17371669-17371789 ( 53) TGTGTGTG 1 chr3R:13732321-13732441 ( 81) TGTGTGTG 1 chr2R:16389868-16389988 ( 81) TGTGTGTG 1 chr2R:7138089-7138209 ( 85) TGTGTGTG 1 chrX:974383-974503 ( 82) TGTGTGTG 1 chr3R:22644283-22644403 ( 42) TGTGTGTG 1 chr2L:11868973-11869093 ( 6) TGTGTGTG 1 chr3R:14971493-14971613 ( 42) TGTGTGTG 1 chr2L:5635336-5635456 ( 111) TGTGTGTG 1 chr3R:16192455-16192575 ( 38) TGTGTGTG 1 chr3R:18518522-18518642 ( 97) TGTGTGTG 1 chrX:14322907-14323027 ( 42) TGTGTGTG 1 chr3L:22339341-22339461 ( 20) TGTGTGTG 1 chr3L:1927932-1928052 ( 87) TGTGGGTG 1 chr3L:16292754-16292874 ( 106) TGTGGGTG 1 chr3L:21427616-21427736 ( 93) TGTGGGTG 1 chr3L:9907405-9907525 ( 34) TGTGGGTG 1 chr2R:9725497-9725617 ( 30) TGTGGGTG 1 chrX:14962041-14962161 ( 14) TGTGGGTG 1 chr3R:22864527-22864647 ( 32) TGTTTGTG 1 chr2L:12769239-12769359 ( 87) TGTTTGTG 1 chrX:9949773-9949893 ( 28) TGTTTGTG 1 chrX:13670140-13670260 ( 93) TGTTTGTG 1 chr2L:8601856-8601976 ( 70) TGTGAGTG 1 chr3R:23235463-23235583 ( 75) TGTGAGTG 1 chr2R:12446004-12446124 ( 97) TGTGAGTG 1 chr3L:21144138-21144258 ( 47) TGCGTGTG 1 chrX:12270858-12270978 ( 47) TGCGTGTG 1 chr3R:20337221-20337341 ( 20) TGCGTGTG 1 chr3R:21988290-21988410 ( 11) TGTCTGTG 1 chr2R:21355891-21356011 ( 28) TGTCTGTG 1 chr2L:6783465-6783585 ( 67) TCTGTGTG 1 chrX:7630007-7630127 ( 5) TGTTGGTG 1 chr2R:14995960-14996080 ( 98) TGTTGGTG 1 chr2R:8554303-8554423 ( 108) TGTGCGTG 1 chrX:13527307-13527427 ( 85) TGAGTGTG 1 chr3L:1630096-1630216 ( 51) TTTGTGTG 1 chr2L:15577216-15577336 ( 109) TGTGTCTG 1 chr2L:9403890-9404010 ( 4) TGTGTATG 1 chr3L:22212547-22212667 ( 75) TCTGGGTG 1 chr2R:16609511-16609631 ( 4) TGCGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2612 E= 1.4e-022 -1232 -1232 -1232 192 -1232 -263 200 -375 -371 -163 -1232 177 -1232 -263 184 -117 -171 -362 -42 145 -371 -362 203 -1232 -1232 -1232 -1232 192 -1232 -1232 209 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.4e-022 0.000000 0.000000 0.000000 1.000000 0.000000 0.039216 0.941176 0.019608 0.019608 0.078431 0.000000 0.901961 0.000000 0.039216 0.843137 0.117647 0.078431 0.019608 0.176471 0.725490 0.019608 0.019608 0.960784 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 19.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAMA MEME-4 width = 8 sites = 81 llr = 630 E-value = 3.5e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 18:a2a49 pos.-specific C 9:a:7:6: probability G :2::1::: matrix T :::::::1 bits 2.1 1.9 * * 1.7 * ** * 1.5 * ** * * Relative 1.3 **** * * Entropy 1.0 **** * * (11.2 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2075399-2075519 54 1.50e-05 CCTGCATGTa cacacaca cagacaaaca chr3R:13239774-13239894 9 1.50e-05 GTCTTGCA CACACACA AGCGAAGGAG chr3L:13991970-13992090 6 1.50e-05 TTACA CACACACA CGCGCGCGCG chr3R:17897023-17897143 6 1.50e-05 acaca cacacaca gcatgccagc chr3R:15168862-15168982 107 1.50e-05 AAGTGGCCAA CACACACA TGCACA chr2L:15577216-15577336 87 1.50e-05 GAGCCACATA CACACACA CTCGTATCTG chr2L:9403890-9404010 35 1.50e-05 CCATCGcaca cacacaca cacacaTTCT chr3R:17530223-17530343 8 1.50e-05 acacaca cacacaca cagtcgccca chr3R:24442425-24442545 35 1.50e-05 CAAAAacaca cacacaca tactctcact chrX:4042220-4042340 29 1.50e-05 cacacacaca cacacaca cacccacaca chr3R:27082468-27082588 43 1.50e-05 GCTGCACCAC CACACACA TTGAATCGGG chr3R:18903318-18903438 31 1.50e-05 CTTTGGGGGG CACACACA ACTTTTGCAT chr3R:27618585-27618705 72 1.50e-05 CATTTGCACA CACACACA CACAGAGAGA chr3R:21997323-21997443 78 1.50e-05 ccgactcaca cacacaca GGCGCAAATG chr3R:15030509-15030629 74 1.50e-05 CTTCAacaca cacacaca cacacactcg chr2R:9924265-9924385 8 1.50e-05 GTGGAGG CACACACA AGGACATGTG chr3L:2316211-2316331 68 1.50e-05 TAAAAACCCG CACACACA CGTCTCGGGA chr2R:14579276-14579396 84 1.50e-05 cacacactca cacacaca acatacacaG chr2R:7887204-7887324 11 1.50e-05 cacacacaca cacacaca agcaggcgca chr3R:27974763-27974883 54 1.50e-05 cccactcaca cacacaca cgagcactcg chr2R:17345825-17345945 41 1.50e-05 TTCCCCTact cacacaca cttacacgct chr2L:4425282-4425402 29 3.09e-05 CACTCACTGG CACACAAA AGGACTTGCA chr3R:28804049-28804169 17 3.09e-05 TCGACTGCTA CACACAAA ATCAATTAAT chr3L:2184933-2185053 37 3.09e-05 TCCAGCAGAA CACACAAA AATGTGTAGC chr3R:26644569-26644689 83 3.09e-05 TGATGTCTGT CACACAAA TTCGGAATCG chr2R:15637755-15637875 21 3.09e-05 agcccacacg cacacaaa cacatacaca chr2L:809547-809667 49 3.09e-05 AGATCCGGGC CACACAAA GAGAAAATGT chr3L:15056957-15057077 9 4.46e-05 CAATGTCA CGCACACA GATGCTCACT chr3L:12359407-12359527 17 4.46e-05 ctcacacata cgcacaca cccacgctca chrX:4334582-4334702 33 4.46e-05 cagacacata cgcacaca ctcagacaGA chrX:19100029-19100149 9 4.46e-05 aacttgga cgcacaca ctctcactcg chr3R:20337221-20337341 66 4.46e-05 CAGACACGCA CGCACACA GACAAACACG chr2R:21415228-21415348 70 6.05e-05 AGGTCAGCAA CACAAACA ACCAACCCAC chrX:13670140-13670260 33 7.51e-05 CGCAACGCAA CGCACAAA AGCATGCTAC chrX:5513383-5513503 57 7.51e-05 CAATGCCACG CGCACAAA ACGAGCATAC chr3R:7290442-7290562 49 7.51e-05 CACTTTGTCC CGCACAAA TGAACACCTC chr3R:18681290-18681410 26 7.51e-05 TTGAACTTGG CGCACAAA TCGCAAGACA chr3R:9116451-9116571 52 9.19e-05 TAGGAGAAGG CACAAAAA CGCATACACT chr3L:8607916-8608036 61 9.19e-05 CAATGCGAGG CACAAAAA GCATTGCCTA chr3L:6023331-6023451 28 9.19e-05 TAAATTATGC CACAAAAA ATGGGGCTGG chrX:659284-659404 32 9.19e-05 AAAAAGGTTG CACAAAAA AGTGGGAAAA chrX:8266626-8266746 76 9.19e-05 CTTAAGACAG CACAAAAA AGTACATCCC chr2L:2266211-2266331 15 1.07e-04 TCCATAGACA CACAGACA GATACGTATA chr3R:18566994-18567114 89 1.07e-04 GATGGTTGCC CACAGACA CATTACACCC chr2R:12092898-12093018 22 1.37e-04 GCAAGAGGAA CGCAAACA AAAACGGGTG chr2L:4106219-4106339 76 1.37e-04 AAGGCCACGC AACACACA TAAGTGAGGG chr2L:16138718-16138838 9 1.37e-04 AACACTAG CGCAAACA GCAGTCCTGG chr2R:16255741-16255861 79 1.37e-04 TGGCTTACGA AACACACA GCCCTGTGGT chr3L:22078647-22078767 83 1.52e-04 cgcatcacat cacacact ccatcgcaAT chr3R:28804891-28805011 92 1.69e-04 TTTAAGCACT CACACATA TTGTAAGGAC chr2R:21596265-21596385 6 1.69e-04 ATGAG CACACata tatgtatgta chr3R:22349912-22350032 20 1.84e-04 CACATGTTTG CACAGAAA ACTCTTTTCC chr2R:19654991-19655111 19 2.17e-04 ACGCGGCGAC CGCAAAAA GCAACGAACG chr2R:15115572-15115692 24 2.17e-04 GCAAAGGAGA AACACAAA CCTACTAAAC chr3L:22212547-22212667 21 2.17e-04 CACAGCAGAA CGCAAAAA CCAAAACCAA chr3R:20683649-20683769 97 2.17e-04 CCGCCAGCGA AACACAAA CTACCAACTT chr3L:21874453-21874573 45 2.17e-04 CAAAGTATGC AACACAAA TTTCGGAACC chr2L:18845925-18846045 88 2.17e-04 CCAACTCCCA CGCAAAAA TCGTAGCATG chr2L:1527552-1527672 37 2.33e-04 TATGCAACTG CACACAAT GCAACCGAGA chrX:10063751-10063871 96 2.47e-04 CTGAAAATTC CACCCACA GCACCACCCA chr3L:16318413-16318533 85 2.47e-04 CCATATAGCT CACCCACA CGCCAGCCAA chr3L:9774719-9774839 76 2.64e-04 TGTATAGATA CACATACA TACACATACG chr3R:20083093-20083213 35 2.64e-04 ATCTGATCTG CACATACA TATAGGTTTG chr3L:22339341-22339461 87 2.64e-04 AAAGCAAATA CACATACA TATACAGGCT chr2L:4904268-4904388 89 3.07e-04 CCACTTGGAC CACCCAAA TTAAGGGATC chrX:11233406-11233526 68 3.38e-04 GAACTGCTTG CGCACACT GCTTGAAGTT chr2R:8554303-8554423 25 3.38e-04 CCCCGGTTTT CGCACACT TTCAAACCCT chr3L:3919713-3919833 56 3.70e-04 AGGGCAGACA AACAAACA CTTTCATGGG chrX:18171613-18171733 60 4.01e-04 ACCCAACAGG CGCAGAAA AGTGTTTGct chr3R:21816210-21816330 86 4.01e-04 TACTTTTCAG CGCAGAAA GCCCTCGGGC chr2R:9725497-9725617 39 4.01e-04 gtgtgggtgg CACAAACT TGGCAAATTC chr2R:7138089-7138209 48 4.01e-04 AAGCGTTTAC CACAAACT GGAAAAGTTT chr3L:16292754-16292874 68 4.50e-04 AAATCCATTT CACAAATA ACAATCGAGT chr3L:10865676-10865796 82 4.50e-04 GCGAAAAACC CATACACA ACCTCCCCTG chr2L:9873476-9873596 57 4.50e-04 GGCTTTTGTT AGCACAAA GCCAAAACAA chr2R:22229453-22229573 27 4.65e-04 TATTACAGAC CGCACAAT GTACCATCTT chr3R:22644283-22644403 95 4.96e-04 AACGCGAGCA AACAAAAA GCGATTCTAA chrX:14682461-14682581 10 5.61e-04 AGTTTGTTC CATACAAA TATGGAAAAT chr2L:4416124-4416244 85 6.68e-04 TGTGTTTATA CACCAAAA GAACGCAATA chr3R:16192455-16192575 75 7.16e-04 AGGTGCAGCC CACAGATA CGAGTATTTA chr2R:23821009-23821129 55 8.14e-04 AGACAACAGT CAAACAAA GTTTCAAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2075399-2075519 1.5e-05 53_[+4]_59 chr3R:13239774-13239894 1.5e-05 8_[+4]_104 chr3L:13991970-13992090 1.5e-05 5_[+4]_107 chr3R:17897023-17897143 1.5e-05 5_[+4]_107 chr3R:15168862-15168982 1.5e-05 106_[+4]_6 chr2L:15577216-15577336 1.5e-05 86_[+4]_26 chr2L:9403890-9404010 1.5e-05 34_[+4]_78 chr3R:17530223-17530343 1.5e-05 7_[+4]_105 chr3R:24442425-24442545 1.5e-05 34_[+4]_78 chrX:4042220-4042340 1.5e-05 28_[+4]_84 chr3R:27082468-27082588 1.5e-05 42_[+4]_70 chr3R:18903318-18903438 1.5e-05 30_[+4]_82 chr3R:27618585-27618705 1.5e-05 71_[+4]_41 chr3R:21997323-21997443 1.5e-05 77_[+4]_35 chr3R:15030509-15030629 1.5e-05 73_[+4]_39 chr2R:9924265-9924385 1.5e-05 7_[+4]_105 chr3L:2316211-2316331 1.5e-05 67_[+4]_45 chr2R:14579276-14579396 1.5e-05 83_[+4]_29 chr2R:7887204-7887324 1.5e-05 10_[+4]_102 chr3R:27974763-27974883 1.5e-05 53_[+4]_59 chr2R:17345825-17345945 1.5e-05 40_[+4]_72 chr2L:4425282-4425402 3.1e-05 28_[+4]_84 chr3R:28804049-28804169 3.1e-05 16_[+4]_96 chr3L:2184933-2185053 3.1e-05 36_[+4]_76 chr3R:26644569-26644689 3.1e-05 82_[+4]_30 chr2R:15637755-15637875 3.1e-05 20_[+4]_92 chr2L:809547-809667 3.1e-05 48_[+4]_64 chr3L:15056957-15057077 4.5e-05 8_[+4]_104 chr3L:12359407-12359527 4.5e-05 16_[+4]_96 chrX:4334582-4334702 4.5e-05 32_[+4]_80 chrX:19100029-19100149 4.5e-05 8_[+4]_104 chr3R:20337221-20337341 4.5e-05 65_[+4]_47 chr2R:21415228-21415348 6e-05 69_[+4]_43 chrX:13670140-13670260 7.5e-05 32_[+4]_80 chrX:5513383-5513503 7.5e-05 56_[+4]_56 chr3R:7290442-7290562 7.5e-05 48_[+4]_64 chr3R:18681290-18681410 7.5e-05 25_[+4]_87 chr3R:9116451-9116571 9.2e-05 51_[+4]_61 chr3L:8607916-8608036 9.2e-05 60_[+4]_52 chr3L:6023331-6023451 9.2e-05 27_[+4]_85 chrX:659284-659404 9.2e-05 31_[+4]_81 chrX:8266626-8266746 9.2e-05 75_[+4]_37 chr2L:2266211-2266331 0.00011 14_[+4]_98 chr3R:18566994-18567114 0.00011 88_[+4]_24 chr2R:12092898-12093018 0.00014 21_[+4]_91 chr2L:4106219-4106339 0.00014 75_[+4]_37 chr2L:16138718-16138838 0.00014 8_[+4]_104 chr2R:16255741-16255861 0.00014 78_[+4]_34 chr3L:22078647-22078767 0.00015 82_[+4]_30 chr3R:28804891-28805011 0.00017 91_[+4]_21 chr2R:21596265-21596385 0.00017 5_[+4]_107 chr3R:22349912-22350032 0.00018 19_[+4]_93 chr2R:19654991-19655111 0.00022 18_[+4]_94 chr2R:15115572-15115692 0.00022 23_[+4]_89 chr3L:22212547-22212667 0.00022 20_[+4]_92 chr3R:20683649-20683769 0.00022 96_[+4]_16 chr3L:21874453-21874573 0.00022 44_[+4]_68 chr2L:18845925-18846045 0.00022 87_[+4]_25 chr2L:1527552-1527672 0.00023 36_[+4]_76 chrX:10063751-10063871 0.00025 95_[+4]_17 chr3L:16318413-16318533 0.00025 84_[+4]_28 chr3L:9774719-9774839 0.00026 75_[+4]_37 chr3R:20083093-20083213 0.00026 34_[+4]_78 chr3L:22339341-22339461 0.00026 86_[+4]_26 chr2L:4904268-4904388 0.00031 88_[+4]_24 chrX:11233406-11233526 0.00034 67_[+4]_45 chr2R:8554303-8554423 0.00034 24_[+4]_88 chr3L:3919713-3919833 0.00037 55_[+4]_57 chrX:18171613-18171733 0.0004 59_[+4]_53 chr3R:21816210-21816330 0.0004 85_[+4]_27 chr2R:9725497-9725617 0.0004 38_[+4]_74 chr2R:7138089-7138209 0.0004 47_[+4]_65 chr3L:16292754-16292874 0.00045 67_[+4]_45 chr3L:10865676-10865796 0.00045 81_[+4]_31 chr2L:9873476-9873596 0.00045 56_[+4]_56 chr2R:22229453-22229573 0.00046 26_[+4]_86 chr3R:22644283-22644403 0.0005 94_[+4]_18 chrX:14682461-14682581 0.00056 9_[+4]_103 chr2L:4416124-4416244 0.00067 84_[+4]_28 chr3R:16192455-16192575 0.00072 74_[+4]_38 chr2R:23821009-23821129 0.00081 54_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAMA width=8 seqs=81 chr2L:2075399-2075519 ( 54) CACACACA 1 chr3R:13239774-13239894 ( 9) CACACACA 1 chr3L:13991970-13992090 ( 6) CACACACA 1 chr3R:17897023-17897143 ( 6) CACACACA 1 chr3R:15168862-15168982 ( 107) CACACACA 1 chr2L:15577216-15577336 ( 87) CACACACA 1 chr2L:9403890-9404010 ( 35) CACACACA 1 chr3R:17530223-17530343 ( 8) CACACACA 1 chr3R:24442425-24442545 ( 35) CACACACA 1 chrX:4042220-4042340 ( 29) CACACACA 1 chr3R:27082468-27082588 ( 43) CACACACA 1 chr3R:18903318-18903438 ( 31) CACACACA 1 chr3R:27618585-27618705 ( 72) CACACACA 1 chr3R:21997323-21997443 ( 78) CACACACA 1 chr3R:15030509-15030629 ( 74) CACACACA 1 chr2R:9924265-9924385 ( 8) CACACACA 1 chr3L:2316211-2316331 ( 68) CACACACA 1 chr2R:14579276-14579396 ( 84) CACACACA 1 chr2R:7887204-7887324 ( 11) CACACACA 1 chr3R:27974763-27974883 ( 54) CACACACA 1 chr2R:17345825-17345945 ( 41) CACACACA 1 chr2L:4425282-4425402 ( 29) CACACAAA 1 chr3R:28804049-28804169 ( 17) CACACAAA 1 chr3L:2184933-2185053 ( 37) CACACAAA 1 chr3R:26644569-26644689 ( 83) CACACAAA 1 chr2R:15637755-15637875 ( 21) CACACAAA 1 chr2L:809547-809667 ( 49) CACACAAA 1 chr3L:15056957-15057077 ( 9) CGCACACA 1 chr3L:12359407-12359527 ( 17) CGCACACA 1 chrX:4334582-4334702 ( 33) CGCACACA 1 chrX:19100029-19100149 ( 9) CGCACACA 1 chr3R:20337221-20337341 ( 66) CGCACACA 1 chr2R:21415228-21415348 ( 70) CACAAACA 1 chrX:13670140-13670260 ( 33) CGCACAAA 1 chrX:5513383-5513503 ( 57) CGCACAAA 1 chr3R:7290442-7290562 ( 49) CGCACAAA 1 chr3R:18681290-18681410 ( 26) CGCACAAA 1 chr3R:9116451-9116571 ( 52) CACAAAAA 1 chr3L:8607916-8608036 ( 61) CACAAAAA 1 chr3L:6023331-6023451 ( 28) CACAAAAA 1 chrX:659284-659404 ( 32) CACAAAAA 1 chrX:8266626-8266746 ( 76) CACAAAAA 1 chr2L:2266211-2266331 ( 15) CACAGACA 1 chr3R:18566994-18567114 ( 89) CACAGACA 1 chr2R:12092898-12093018 ( 22) CGCAAACA 1 chr2L:4106219-4106339 ( 76) AACACACA 1 chr2L:16138718-16138838 ( 9) CGCAAACA 1 chr2R:16255741-16255861 ( 79) AACACACA 1 chr3L:22078647-22078767 ( 83) CACACACT 1 chr3R:28804891-28805011 ( 92) CACACATA 1 chr2R:21596265-21596385 ( 6) CACACATA 1 chr3R:22349912-22350032 ( 20) CACAGAAA 1 chr2R:19654991-19655111 ( 19) CGCAAAAA 1 chr2R:15115572-15115692 ( 24) AACACAAA 1 chr3L:22212547-22212667 ( 21) CGCAAAAA 1 chr3R:20683649-20683769 ( 97) AACACAAA 1 chr3L:21874453-21874573 ( 45) AACACAAA 1 chr2L:18845925-18846045 ( 88) CGCAAAAA 1 chr2L:1527552-1527672 ( 37) CACACAAT 1 chrX:10063751-10063871 ( 96) CACCCACA 1 chr3L:16318413-16318533 ( 85) CACCCACA 1 chr3L:9774719-9774839 ( 76) CACATACA 1 chr3R:20083093-20083213 ( 35) CACATACA 1 chr3L:22339341-22339461 ( 87) CACATACA 1 chr2L:4904268-4904388 ( 89) CACCCAAA 1 chrX:11233406-11233526 ( 68) CGCACACT 1 chr2R:8554303-8554423 ( 25) CGCACACT 1 chr3L:3919713-3919833 ( 56) AACAAACA 1 chrX:18171613-18171733 ( 60) CGCAGAAA 1 chr3R:21816210-21816330 ( 86) CGCAGAAA 1 chr2R:9725497-9725617 ( 39) CACAAACT 1 chr2R:7138089-7138209 ( 48) CACAAACT 1 chr3L:16292754-16292874 ( 68) CACAAATA 1 chr3L:10865676-10865796 ( 82) CATACACA 1 chr2L:9873476-9873596 ( 57) AGCACAAA 1 chr2R:22229453-22229573 ( 27) CGCACAAT 1 chr3R:22644283-22644403 ( 95) AACAAAAA 1 chrX:14682461-14682581 ( 10) CATACAAA 1 chr2L:4416124-4416244 ( 85) CACCAAAA 1 chr3R:16192455-16192575 ( 75) CACAGATA 1 chr2R:23821009-23821129 ( 55) CAAACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3984 E= 3.5e-020 -138 189 -1298 -1298 155 -1298 7 -1298 -438 199 -1298 -342 189 -229 -1298 -1298 -29 149 -167 -284 196 -1298 -1298 -1298 62 120 -1298 -242 183 -1298 -1298 -162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 3.5e-020 0.098765 0.901235 0.000000 0.000000 0.753086 0.000000 0.246914 0.000000 0.012346 0.962963 0.000000 0.024691 0.950617 0.049383 0.000000 0.000000 0.209877 0.679012 0.074074 0.037037 1.000000 0.000000 0.000000 0.000000 0.395062 0.555556 0.000000 0.049383 0.913580 0.000000 0.000000 0.086420 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAMA MEME-4 regular expression -------------------------------------------------------------------------------- C[AG]CA[CA]A[CA]A -------------------------------------------------------------------------------- Time 25.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCAGC MEME-5 width = 8 sites = 14 llr = 137 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::9:: pos.-specific C ::1:a1:a probability G 919a::a: matrix T :9:::::: bits 2.1 ** ** 1.9 ** ** 1.7 ** ** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30898997-30899117 8 1.24e-05 CAGCGTT GTGGCAGC AGTTTAATAT chr2L:3756127-3756247 69 1.24e-05 AAATGCTGCA GTGGCAGC TTTGTTTGGC chr2L:4904268-4904388 65 1.24e-05 AGAGCAGGAG GTGGCAGC TTAAAGCCAC chr3L:12893539-12893659 110 1.24e-05 GACAGGAGTT GTGGCAGC GAC chr3R:21997323-21997443 104 1.24e-05 TGGCGATGCT GTGGCAGC TGAAGCTTT chr3R:27027943-27028063 110 1.24e-05 CTGTTGCCTG GTGGCAGC GAG chr3L:22339341-22339461 111 1.24e-05 GGCTGAAGCA GTGGCAGC AG chrX:13527307-13527427 4 2.40e-05 CGG GTGGCCGC GCTTCAATCG chrX:2773617-2773737 49 2.40e-05 ACCCCCTTCA GTGGCCGC CAGGGAGGCG chr2L:1089711-1089831 8 5.02e-05 GCCAGCT GTCGCAGC CGCAATTTCA chr3L:15647125-15647245 1 5.02e-05 . ATGGCAGC CTAAAAGTAT chr3R:26581860-26581980 105 5.02e-05 ATTTATTGAT ATGGCAGC AGACAATT chr2R:17876216-17876336 37 5.02e-05 GTGGGCATTA GTCGCAGC TGTTCCAACG chr3R:15168862-15168982 5 6.12e-05 TTTC GGGGCAGC CAGCGAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30898997-30899117 1.2e-05 7_[+5]_105 chr2L:3756127-3756247 1.2e-05 68_[+5]_44 chr2L:4904268-4904388 1.2e-05 64_[+5]_48 chr3L:12893539-12893659 1.2e-05 109_[+5]_3 chr3R:21997323-21997443 1.2e-05 103_[+5]_9 chr3R:27027943-27028063 1.2e-05 109_[+5]_3 chr3L:22339341-22339461 1.2e-05 110_[+5]_2 chrX:13527307-13527427 2.4e-05 3_[+5]_109 chrX:2773617-2773737 2.4e-05 48_[+5]_64 chr2L:1089711-1089831 5e-05 7_[+5]_105 chr3L:15647125-15647245 5e-05 [+5]_112 chr3R:26581860-26581980 5e-05 104_[+5]_8 chr2R:17876216-17876336 5e-05 36_[+5]_76 chr3R:15168862-15168982 6.1e-05 4_[+5]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCAGC width=8 seqs=14 chr3R:30898997-30899117 ( 8) GTGGCAGC 1 chr2L:3756127-3756247 ( 69) GTGGCAGC 1 chr2L:4904268-4904388 ( 65) GTGGCAGC 1 chr3L:12893539-12893659 ( 110) GTGGCAGC 1 chr3R:21997323-21997443 ( 104) GTGGCAGC 1 chr3R:27027943-27028063 ( 110) GTGGCAGC 1 chr3L:22339341-22339461 ( 111) GTGGCAGC 1 chrX:13527307-13527427 ( 4) GTGGCCGC 1 chrX:2773617-2773737 ( 49) GTGGCCGC 1 chr2L:1089711-1089831 ( 8) GTCGCAGC 1 chr3L:15647125-15647245 ( 1) ATGGCAGC 1 chr3R:26581860-26581980 ( 105) ATGGCAGC 1 chr2R:17876216-17876336 ( 37) GTCGCAGC 1 chr3R:15168862-15168982 ( 5) GGGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.5e+004 -85 -1045 186 -1045 -1045 -1045 -172 181 -1045 -76 186 -1045 -1045 -1045 209 -1045 -1045 204 -1045 -1045 174 -76 -1045 -1045 -1045 -1045 209 -1045 -1045 204 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.5e+004 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.071429 0.928571 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCAGC MEME-5 regular expression -------------------------------------------------------------------------------- GTGGCAGC -------------------------------------------------------------------------------- Time 31.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22339341-22339461 3.11e-05 15_[+3(1.53e-05)]_87_[+5(1.24e-05)]_\ 2 chr2R:16036862-16036982 1.20e-02 75_[+1(1.61e-05)]_37 chr2R:17345825-17345945 1.26e-01 40_[+4(1.50e-05)]_10_[+4(4.46e-05)]_\ 2_[+4(3.09e-05)]_44 chr2R:16609511-16609631 3.73e-01 120 chr3R:12949469-12949589 6.78e-01 120 chr2R:10996318-10996438 1.18e-01 8_[+4(1.50e-05)]_[+4(1.50e-05)]_\ [+4(1.50e-05)]_88 chrX:8222851-8222971 9.87e-03 12_[+2(1.70e-05)]_100 chr2R:18480195-18480315 4.96e-03 41_[+1(1.61e-05)]_71 chr3R:22510943-22511063 7.34e-01 120 chr3R:12321382-12321502 1.02e-01 84_[+2(1.70e-05)]_28 chr2R:12446004-12446124 9.29e-04 42_[+2(1.70e-05)]_46_[+3(6.09e-05)]_\ 16 chrX:19982643-19982763 5.15e-01 120 chr3L:22078647-22078767 5.18e-02 120 chr2L:809547-809667 7.41e-03 48_[+4(3.09e-05)]_64 chrX:10453709-10453829 9.36e-02 29_[+1(4.51e-05)]_83 chrX:14322907-14323027 6.78e-02 18_[+3(1.53e-05)]_13_[+3(1.53e-05)]_\ [+3(1.53e-05)]_35_[+3(1.53e-05)]_22 chr3R:18518522-18518642 1.60e-03 60_[+3(2.89e-05)]_13_[+1(3.08e-05)]_\ 1_[+3(1.53e-05)]_[+3(1.53e-05)]_14 chr2L:2004793-2004913 2.60e-01 120 chr2R:21593701-21593821 4.59e-01 120 chr2R:17163606-17163726 7.28e-02 120 chr3R:27974763-27974883 1.56e-01 49_[+4(1.50e-05)]_63 chr2R:15637755-15637875 8.58e-02 20_[+4(3.09e-05)]_92 chrX:2773617-2773737 2.10e-03 48_[+5(2.40e-05)]_41_[+1(1.61e-05)]_\ 15 chr2R:7887204-7887324 1.30e-03 [+4(1.50e-05)]_[+4(1.50e-05)]_12_\ [+4(4.46e-05)]_48_[+2(3.30e-05)]_28 chrX:13548496-13548616 1.86e-02 95_[+1(7.97e-05)]_17 chr2R:21208400-21208520 9.32e-02 120 chr3L:17784303-17784423 2.56e-02 120 chr2R:14579276-14579396 2.43e-03 16_[+1(6.17e-05)]_57_[+4(1.50e-05)]_\ 31 chr3L:2316211-2316331 9.41e-04 41_[+1(1.61e-05)]_18_[+4(1.50e-05)]_\ 45 chr2L:6783465-6783585 1.65e-03 87_[+2(1.70e-05)]_25 chr2L:18845925-18846045 3.67e-03 100_[+2(4.86e-05)]_12 chrX:13527307-13527427 5.16e-04 3_[+5(2.40e-05)]_109 chr3L:17254697-17254817 4.78e-02 30_[+2(1.70e-05)]_82 chr2L:4416124-4416244 5.16e-01 120 chrX:14962041-14962161 1.11e-01 13_[+3(2.89e-05)]_99 chr2R:23821009-23821129 1.13e-01 120 chr3R:26643714-26643834 3.03e-01 120 chr2R:22952353-22952473 3.98e-02 [+2(8.31e-05)]_112 chr2R:17297958-17298078 1.17e-02 92_[+1(1.61e-05)]_20 chr3R:20337221-20337341 1.03e-03 19_[+3(7.49e-05)]_38_[+4(4.46e-05)]_\ 14_[+4(7.51e-05)]_25 chr3L:22339610-22339730 3.61e-01 120 chr3R:29430417-29430537 4.77e-01 120 chr2R:9924265-9924385 2.38e-04 7_[+4(1.50e-05)]_64_[+2(1.70e-05)]_\ 33 chr2R:22229453-22229573 2.53e-03 70_[+1(1.61e-05)]_42 chr3L:4900935-4901055 9.01e-01 120 chrX:18322548-18322668 1.17e-02 73_[+2(1.70e-05)]_39 chr2L:12987212-12987332 2.34e-02 72_[+1(1.61e-05)]_40 chr3R:16192455-16192575 2.63e-05 37_[+3(1.53e-05)]_9_[+2(1.70e-05)]_\ 58 chr3R:22349912-22350032 6.47e-03 91_[+1(1.61e-05)]_21 chr3R:28975573-28975693 7.17e-01 120 chr3R:13520219-13520339 2.66e-02 17_[+1(1.61e-05)]_95 chrX:9915949-9916069 2.72e-02 87_[+2(1.70e-05)]_25 chr2R:16255741-16255861 5.11e-02 120 chr3R:23235463-23235583 5.41e-05 45_[+1(1.61e-05)]_21_[+3(6.09e-05)]_\ 10_[+2(8.31e-05)]_20 chr3L:17442415-17442535 6.33e-01 120 chr2R:21596265-21596385 2.60e-02 120 chr2L:8808026-8808146 6.61e-02 107_[+1(1.61e-05)]_5 chr2L:20384012-20384132 3.72e-01 120 chr2L:1527552-1527672 9.74e-04 23_[+1(1.61e-05)]_24_[+5(9.97e-05)]_\ 57 chr2R:15004513-15004633 1.22e-01 85_[+1(7.97e-05)]_27 chr2R:21355891-21356011 5.73e-02 27_[+3(9.06e-05)]_85 chr3L:21874453-21874573 3.03e-04 36_[+1(1.61e-05)]_76 chr3R:27027943-27028063 1.74e-02 109_[+5(1.24e-05)]_3 chr2R:14995960-14996080 9.95e-04 8_[+2(1.70e-05)]_104 chr3R:20083093-20083213 7.36e-02 120 chr3R:6302690-6302810 1.94e-01 120 chr2L:10045119-10045239 9.95e-01 120 chr3R:13283267-13283387 5.61e-01 120 chr3L:16318413-16318533 5.63e-01 120 chr2L:4270031-4270151 1.40e-01 120 chr2L:5635336-5635456 1.98e-04 110_[+3(1.53e-05)]_2 chr2R:19315553-19315673 1.17e-01 85_[+1(6.17e-05)]_27 chr3R:18681290-18681410 6.60e-03 25_[+4(7.51e-05)]_87 chr3L:1227533-1227653 5.04e-01 120 chrX:18727002-18727122 1.10e-01 73_[+2(6.51e-05)]_39 chr3R:15030509-15030629 6.33e-04 38_[+1(1.61e-05)]_23_[+4(1.50e-05)]_\ [+4(1.50e-05)]_6_[+4(1.50e-05)]_21 chr2R:8554303-8554423 1.08e-03 98_[+2(1.70e-05)]_14 chr3L:13472003-13472123 5.24e-01 120 chr3R:14971493-14971613 2.00e-03 37_[+3(1.53e-05)]_[+3(1.53e-05)]_32_\ [+2(4.86e-05)]_27 chr3R:20683649-20683769 1.25e-02 61_[+2(1.70e-05)]_51 chr2L:11868973-11869093 9.63e-03 3_[+3(1.53e-05)]_109 chr2R:16770675-16770795 4.83e-02 120 chr3R:25370711-25370831 9.41e-01 120 chr3R:21997323-21997443 1.62e-05 28_[+2(1.70e-05)]_3_[+5(6.12e-05)]_\ 26_[+4(1.50e-05)]_22_[+5(1.24e-05)]_9 chr3L:22212547-22212667 1.69e-02 120 chr3L:4086585-4086705 4.57e-02 120 chr3R:26644569-26644689 1.42e-01 82_[+4(3.09e-05)]_30 chr2L:9873476-9873596 2.43e-02 120 chr3R:27618585-27618705 1.99e-03 35_[+1(1.61e-05)]_24_[+4(1.50e-05)]_\ [+4(1.50e-05)]_37 chrX:8266626-8266746 2.02e-02 75_[+4(9.19e-05)]_37 chr2R:22971870-22971990 5.72e-01 120 chr3R:17764451-17764571 9.85e-02 105_[+2(8.31e-05)]_7 chr2R:11133202-11133322 4.95e-02 120 chr2L:16138718-16138838 5.04e-04 71_[+2(1.70e-05)]_41 chr2L:3094325-3094445 1.63e-02 103_[+2(1.70e-05)]_9 chr3R:25378633-25378753 4.76e-02 12_[+1(4.51e-05)]_100 chr3R:25570622-25570742 1.79e-02 35_[+2(1.70e-05)]_77 chr3R:7290442-7290562 1.69e-03 12_[+2(1.70e-05)]_28_[+4(7.51e-05)]_\ 64 chr3R:22644283-22644403 4.96e-03 39_[+3(1.53e-05)]_73 chr3R:27028217-27028337 2.79e-02 107_[+2(3.30e-05)]_5 chr2L:15894567-15894687 1.56e-02 102_[+2(1.70e-05)]_10 chr3L:12488547-12488667 2.89e-01 120 chr2L:2621523-2621643 1.44e-02 7_[+1(1.61e-05)]_105 chr3R:24873343-24873463 6.83e-01 120 chrX:19100029-19100149 2.72e-03 8_[+4(4.46e-05)]_72_[+2(1.70e-05)]_\ 24 chr2L:5339301-5339421 4.33e-02 120 chr3R:18903318-18903438 8.12e-04 15_[+2(3.30e-05)]_7_[+4(1.50e-05)]_\ 82 chr2R:15115572-15115692 4.84e-02 120 chr2L:17210159-17210279 1.70e-01 120 chr2R:19654991-19655111 8.94e-03 98_[+1(1.61e-05)]_14 chrX:659284-659404 1.39e-01 31_[+4(9.19e-05)]_81 chrX:5513383-5513503 4.33e-03 4_[+2(1.70e-05)]_44_[+4(7.51e-05)]_\ 4_[+2(1.70e-05)]_44 chrX:974383-974503 2.66e-02 81_[+3(1.53e-05)]_31 chr2R:7138089-7138209 6.07e-03 74_[+3(1.53e-05)]_[+3(1.53e-05)]_\ [+3(1.53e-05)]_22 chrX:11677669-11677789 8.05e-01 120 chr3L:4578203-4578323 2.24e-03 38_[+1(1.61e-05)]_74 chr3L:19457042-19457162 6.24e-03 38_[+1(1.61e-05)]_74 chr3R:28804317-28804437 3.78e-01 120 chr2R:20739016-20739136 1.94e-02 9_[+1(1.61e-05)]_103 chr2L:13986795-13986915 5.26e-01 120 chr3L:2216877-2216997 8.56e-01 120 chrX:13670140-13670260 3.89e-04 32_[+4(7.51e-05)]_52_[+3(4.61e-05)]_\ 20 chr2R:17876216-17876336 2.31e-03 36_[+5(5.02e-05)]_66_[+2(1.70e-05)]_\ 2 chr3R:18566994-18567114 1.32e-03 9_[+2(1.70e-05)]_103 chr3R:9114399-9114519 9.29e-03 97_[+1(1.61e-05)]_15 chr3L:15809660-15809780 3.90e-01 120 chr2L:14107282-14107402 9.22e-01 120 chr3R:21988290-21988410 3.30e-04 10_[+3(9.06e-05)]_22_[+2(1.70e-05)]_\ 72 chr2R:16620187-16620307 4.69e-02 120 chr2R:19003984-19004104 5.94e-01 120 chr2L:3732570-3732690 5.51e-03 55_[+2(1.70e-05)]_57 chrX:4334582-4334702 7.05e-02 32_[+4(4.46e-05)]_80 chr3R:10964514-10964634 5.92e-02 120 chr3L:6023331-6023451 6.56e-03 19_[+1(7.97e-05)]_[+4(9.19e-05)]_85 chr2R:16389868-16389988 3.66e-04 12_[+2(1.70e-05)]_58_[+3(1.53e-05)]_\ 2_[+3(6.09e-05)]_12_[+3(6.09e-05)]_4 chr3L:6541976-6542096 2.02e-01 98_[+1(1.61e-05)]_14 chr2R:11008951-11009071 5.16e-03 110_[+2(1.70e-05)]_2 chr2L:4106219-4106339 2.54e-02 120 chr3R:29475670-29475790 3.02e-02 38_[+1(1.61e-05)]_74 chrX:10063751-10063871 2.44e-02 69_[+1(1.61e-05)]_43 chr2R:16877944-16878064 6.00e-01 120 chr2L:14941385-14941505 1.52e-01 120 chr3L:1004742-1004862 9.61e-02 120 chrX:1019082-1019202 2.84e-02 74_[+2(1.70e-05)]_38 chr2R:18766959-18767079 8.70e-01 120 chrX:7630007-7630127 1.45e-02 65_[+2(4.86e-05)]_47 chr3R:27082468-27082588 1.71e-01 42_[+4(1.50e-05)]_70 chr3R:26581860-26581980 1.79e-02 104_[+5(5.02e-05)]_8 chr2R:16891746-16891866 5.38e-03 111_[+2(1.70e-05)]_1 chr3L:12893539-12893659 4.15e-02 109_[+5(1.24e-05)]_3 chrX:14682461-14682581 1.06e-02 85_[+1(1.61e-05)]_27 chr3L:12359407-12359527 2.96e-04 16_[+4(4.46e-05)]_59_[+1(1.61e-05)]_\ 29 chrX:4042220-4042340 1.53e-03 16_[+4(1.50e-05)]_[+4(1.50e-05)]_42_\ [+1(1.61e-05)]_38 chr2L:2812592-2812712 4.51e-01 120 chr3L:6247585-6247705 2.75e-01 120 chr2L:9256918-9257038 1.13e-01 107_[+2(1.70e-05)]_5 chrX:11732498-11732618 2.82e-01 120 chr3L:22917588-22917708 9.20e-01 120 chr3L:16222839-16222959 2.73e-01 120 chr3R:13732321-13732441 1.21e-02 78_[+3(1.53e-05)]_34 chr2L:18109478-18109598 1.22e-04 66_[+2(1.70e-05)]_28_[+1(7.97e-05)]_\ 10 chr3R:11320884-11321004 4.37e-01 120 chr2R:17370014-17370134 2.29e-02 34_[+1(1.61e-05)]_78 chrX:12270858-12270978 7.09e-03 1_[+1(1.61e-05)]_37_[+3(7.49e-05)]_\ 66 chr2L:4904268-4904388 1.85e-02 64_[+5(1.24e-05)]_48 chr3L:21144138-21144258 2.84e-01 46_[+3(7.49e-05)]_66 chr3R:17371669-17371789 4.41e-04 52_[+3(1.53e-05)]_24_[+3(1.53e-05)]_\ 28 chr2R:9725497-9725617 1.52e-02 29_[+3(2.89e-05)]_83 chr3L:8607916-8608036 1.82e-03 60_[+4(9.19e-05)]_5_[+2(3.30e-05)]_\ 39 chr3L:9907405-9907525 3.72e-02 33_[+3(2.89e-05)]_79 chr3L:9774719-9774839 6.52e-02 120 chr2R:22958202-22958322 1.29e-01 120 chr3L:10719504-10719624 3.63e-01 120 chr3R:16068071-16068191 1.42e-01 120 chr2R:9182869-9182989 6.39e-01 120 chr3R:24442425-24442545 2.04e-03 30_[+4(1.50e-05)]_54_[+1(1.61e-05)]_\ 20 chr3L:15647125-15647245 1.20e-03 [+5(5.02e-05)]_4_[+1(1.61e-05)]_100 chr3R:26773784-26773904 8.51e-01 120 chr2R:19069608-19069728 3.74e-01 120 chr3R:28804891-28805011 9.92e-02 120 chrX:13034808-13034928 2.96e-02 33_[+3(1.53e-05)]_[+3(1.53e-05)]_17_\ [+3(7.49e-05)]_46 chr3L:2184933-2185053 4.52e-04 36_[+4(3.09e-05)]_8_[+2(4.86e-05)]_\ 60 chr3R:17530223-17530343 1.65e-03 1_[+4(1.50e-05)]_[+4(1.50e-05)]_28_\ [+2(6.51e-05)]_67 chr2R:21415228-21415348 2.62e-02 69_[+4(6.05e-05)]_43 chr2R:9790146-9790266 3.28e-01 120 chr3R:31268795-31268915 1.32e-01 70_[+1(1.61e-05)]_42 chr2L:10807814-10807934 5.96e-01 120 chrX:15559657-15559777 3.33e-02 41_[+1(1.61e-05)]_71 chr2L:1089711-1089831 4.21e-05 7_[+5(5.02e-05)]_23_[+1(1.61e-05)]_\ 60_[+3(1.53e-05)]_6 chr2L:2266211-2266331 4.14e-02 120 chr2L:9403890-9404010 2.68e-03 30_[+4(1.50e-05)]_[+4(1.50e-05)]_74 chr3L:10865676-10865796 4.42e-01 120 chr2L:16542919-16543039 7.75e-01 120 chr2L:10692014-10692134 1.16e-02 12_[+2(1.70e-05)]_100 chr3L:2714305-2714425 9.66e-01 120 chr2L:15932826-15932946 2.71e-02 23_[+1(1.61e-05)]_89 chr2L:13491315-13491435 1.73e-03 120 chr3R:21816210-21816330 1.54e-02 72_[+2(1.70e-05)]_40 chr3L:3919713-3919833 3.35e-01 120 chr3R:25241498-25241618 1.78e-01 120 chr2L:15577216-15577336 1.19e-04 16_[+2(1.70e-05)]_62_[+4(1.50e-05)]_\ 26 chr3L:1630096-1630216 1.86e-02 120 chr3R:9116451-9116571 1.43e-05 26_[+1(6.17e-05)]_17_[+4(9.19e-05)]_\ 52_[+3(1.53e-05)]_1 chr2R:21439392-21439512 2.16e-03 74_[+2(1.70e-05)]_38 chr2L:8601856-8601976 7.09e-04 40_[+2(1.70e-05)]_21_[+3(6.09e-05)]_\ 43 chr3R:18258499-18258619 8.36e-01 120 chr3L:21427616-21427736 1.22e-02 92_[+3(2.89e-05)]_20 chrX:11370782-11370902 1.20e-04 1_[+3(1.53e-05)]_39_[+2(1.70e-05)]_\ 32_[+3(1.53e-05)]_24 chr3L:15056957-15057077 1.32e-01 8_[+4(4.46e-05)]_104 chr3L:16292754-16292874 4.70e-02 105_[+3(2.89e-05)]_7 chr3R:11515368-11515488 5.18e-03 81_[+1(1.61e-05)]_31 chr3L:9571672-9571792 8.43e-01 120 chrX:17441440-17441560 7.11e-01 120 chr2L:3756127-3756247 1.08e-03 22_[+1(1.61e-05)]_38_[+5(1.24e-05)]_\ 44 chr3R:15168862-15168982 9.54e-05 4_[+5(6.12e-05)]_29_[+1(4.51e-05)]_\ 57_[+4(1.50e-05)]_6 chr2R:19209306-19209426 9.91e-03 76_[+2(6.51e-05)]_36 chr3L:22319877-22319997 1.46e-02 99_[+2(1.70e-05)]_13 chr2R:12092898-12093018 1.98e-01 120 chr3L:21360296-21360416 7.65e-01 120 chr3L:13362727-13362847 1.87e-03 33_[+2(1.70e-05)]_79 chr3R:28804049-28804169 2.80e-02 16_[+4(3.09e-05)]_96 chr3L:1927932-1928052 2.55e-02 66_[+3(2.89e-05)]_12_[+3(2.89e-05)]_\ 26 chr3R:30898997-30899117 3.37e-02 7_[+5(1.24e-05)]_105 chrX:9949773-9949893 7.99e-02 27_[+3(4.61e-05)]_85 chr2R:23441798-23441918 5.19e-01 120 chrX:18171613-18171733 2.15e-01 120 chr2L:9661182-9661302 1.30e-01 94_[+1(4.51e-05)]_18 chr3R:22311025-22311145 1.70e-03 41_[+3(9.06e-05)]_50_[+3(1.53e-05)]_\ 13 chrX:11233406-11233526 7.76e-05 24_[+1(7.97e-05)]_70_[+2(3.30e-05)]_\ 10 chr2L:12769239-12769359 3.38e-05 7_[+2(6.51e-05)]_71_[+3(4.61e-05)]_\ 26 chr3R:29645825-29645945 1.14e-02 97_[+1(4.51e-05)]_15 chr2L:7904567-7904687 3.61e-01 120 chr3R:17897023-17897143 4.93e-02 1_[+4(1.50e-05)]_72_[+4(1.50e-05)]_\ 31 chr3R:22864527-22864647 1.80e-03 31_[+3(4.61e-05)]_7_[+1(4.51e-05)]_\ 66 chr3R:25508494-25508614 4.48e-03 78_[+3(1.53e-05)]_15_[+3(7.49e-05)]_\ 11 chr3L:17082510-17082630 1.35e-01 120 chr3R:15376678-15376798 9.54e-03 35_[+3(1.53e-05)]_4_[+3(1.53e-05)]_\ 65 chr3L:7056166-7056286 1.11e-01 120 chr3L:13991970-13992090 8.53e-04 3_[+4(1.50e-05)]_24_[+3(1.53e-05)]_\ 77 chr2R:21596867-21596987 5.39e-03 111_[+3(1.53e-05)]_1 chr2R:7852462-7852582 5.83e-05 35_[+2(1.70e-05)]_30_[+3(1.53e-05)]_\ [+3(1.53e-05)]_23_[+3(9.06e-05)] chrX:8228337-8228457 7.31e-01 120 chr3R:13239774-13239894 1.69e-02 6_[+4(1.50e-05)]_37_[+4(6.05e-05)]_\ 61 chr2L:2075399-2075519 2.18e-02 53_[+4(1.50e-05)]_59 chr3R:22284943-22285063 9.72e-03 71_[+1(1.61e-05)]_41 chr2L:4425282-4425402 7.93e-02 28_[+4(3.09e-05)]_84 chr2L:10560374-10560494 1.42e-02 104_[+2(1.70e-05)]_8 chr2L:9547074-9547194 8.67e-01 120 chr3R:27628284-27628404 6.12e-02 120 chr3L:11642078-11642198 2.45e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************