******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/stwl.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4911199-4911319 1.0000 120 chr2L:11429685-11429805 1.0000 120 chr3R:23961004-23961124 1.0000 120 chrX:8137424-8137544 1.0000 120 chr3L:11539622-11539742 1.0000 120 chr3R:12375379-12375499 1.0000 120 chrX:14265283-14265403 1.0000 120 chrX:4493653-4493773 1.0000 120 chrX:17361250-17361370 1.0000 120 chr2R:18309078-18309198 1.0000 120 chrX:18993006-18993126 1.0000 120 chr3L:15357579-15357699 1.0000 120 chrX:19844149-19844269 1.0000 120 chr3L:10991761-10991881 1.0000 120 chr3L:19142726-19142846 1.0000 120 chr3R:19306578-19306698 1.0000 120 chr2L:16747284-16747404 1.0000 120 chr2L:5447380-5447500 1.0000 120 chr3R:10591603-10591723 1.0000 120 chrX:4177872-4177992 1.0000 120 chr2R:18878754-18878874 1.0000 120 chrX:22981647-22981767 1.0000 120 chr2R:23222145-23222265 1.0000 120 chr2R:21675014-21675134 1.0000 120 chr2L:21905278-21905398 1.0000 120 chrX:5922196-5922316 1.0000 120 chrX:11659773-11659893 1.0000 120 chrX:22575221-22575341 1.0000 120 chr2L:5353622-5353742 1.0000 120 chrX:12821695-12821815 1.0000 120 chr3L:8210735-8210855 1.0000 120 chr2R:20349063-20349183 1.0000 120 chrX:17548929-17549049 1.0000 120 chr3R:4570475-4570595 1.0000 120 chr2L:1909213-1909333 1.0000 120 chrX:6361372-6361492 1.0000 120 chr3L:8843180-8843300 1.0000 120 chr3L:10686757-10686877 1.0000 120 chr3R:18590897-18591017 1.0000 120 chr2L:3308653-3308773 1.0000 120 chr3R:25470523-25470643 1.0000 120 chr3L:8012519-8012639 1.0000 120 chr3L:16566938-16567058 1.0000 120 chrX:4181346-4181466 1.0000 120 chr3R:22180175-22180295 1.0000 120 chr3L:18154288-18154408 1.0000 120 chr3R:15682237-15682357 1.0000 120 chr2R:23622062-23622182 1.0000 120 chr2L:5370753-5370873 1.0000 120 chr3R:20332827-20332947 1.0000 120 chr3R:19291522-19291642 1.0000 120 chr2L:12636323-12636443 1.0000 120 chr3R:4728576-4728696 1.0000 120 chrX:3788558-3788678 1.0000 120 chr3L:13117627-13117747 1.0000 120 chr3L:13884599-13884719 1.0000 120 chr3R:32011119-32011239 1.0000 120 chr3L:1119941-1120061 1.0000 120 chr3L:2830797-2830917 1.0000 120 chr3R:21013926-21014046 1.0000 120 chr3L:13223736-13223856 1.0000 120 chr2L:2920318-2920438 1.0000 120 chr3L:13299830-13299950 1.0000 120 chr3R:6436746-6436866 1.0000 120 chr2R:24892239-24892359 1.0000 120 chr2L:18321081-18321201 1.0000 120 chr3L:7915940-7916060 1.0000 120 chrX:17468501-17468621 1.0000 120 chrX:20638185-20638305 1.0000 120 chr3L:16390906-16391026 1.0000 120 chr2L:22215239-22215359 1.0000 120 chr3L:20204008-20204128 1.0000 120 chr2L:2954611-2954731 1.0000 120 chr3L:20743737-20743857 1.0000 120 chr3R:30306644-30306764 1.0000 120 chrX:8231380-8231500 1.0000 120 chr3L:508048-508168 1.0000 120 chr3L:17245704-17245824 1.0000 120 chr3R:16295875-16295995 1.0000 120 chrX:4139201-4139321 1.0000 120 chr3L:10166604-10166724 1.0000 120 chrX:22499696-22499816 1.0000 120 chrX:15493047-15493167 1.0000 120 chr3R:24065895-24066015 1.0000 120 chr2L:7315688-7315808 1.0000 120 chr2L:16478865-16478985 1.0000 120 chr2R:7377951-7378071 1.0000 120 chr3L:16889629-16889749 1.0000 120 chr3R:11147579-11147699 1.0000 120 chrX:10729335-10729455 1.0000 120 chr2R:10959425-10959545 1.0000 120 chr3R:12310164-12310284 1.0000 120 chr3R:15839438-15839558 1.0000 120 chr2L:7226714-7226834 1.0000 120 chr2L:10311124-10311244 1.0000 120 chr3R:29206304-29206424 1.0000 120 chrX:12645515-12645635 1.0000 120 chrX:17940385-17940505 1.0000 120 chr2R:17310480-17310600 1.0000 120 chr3L:14336975-14337095 1.0000 120 chr3L:2107635-2107755 1.0000 120 chrX:4627296-4627416 1.0000 120 chrX:1216806-1216926 1.0000 120 chr3L:22094429-22094549 1.0000 120 chrX:10929781-10929901 1.0000 120 chrX:20231842-20231962 1.0000 120 chrX:13366839-13366959 1.0000 120 chr3R:11403045-11403165 1.0000 120 chr2L:21726-21846 1.0000 120 chr3L:14219520-14219640 1.0000 120 chr2R:6326708-6326828 1.0000 120 chrX:11993420-11993540 1.0000 120 chr3R:6010133-6010253 1.0000 120 chrX:17298354-17298474 1.0000 120 chrX:8510788-8510908 1.0000 120 chrX:8232982-8233102 1.0000 120 chr2R:13039612-13039732 1.0000 120 chrX:5839884-5840004 1.0000 120 chr2L:1500470-1500590 1.0000 120 chr2L:13278536-13278656 1.0000 120 chr2L:15118161-15118281 1.0000 120 chrX:18057668-18057788 1.0000 120 chr3R:22072701-22072821 1.0000 120 chrX:6363297-6363417 1.0000 120 chr3L:14803367-14803487 1.0000 120 chr2L:17715971-17716091 1.0000 120 chr2R:21872338-21872458 1.0000 120 chr3L:14397168-14397288 1.0000 120 chr3L:13031455-13031575 1.0000 120 chr3R:20000026-20000146 1.0000 120 chr2R:10679535-10679655 1.0000 120 chr3L:8109027-8109147 1.0000 120 chr3L:4069241-4069361 1.0000 120 chr2L:18821-18941 1.0000 120 chrX:13833710-13833830 1.0000 120 chr3L:3466318-3466438 1.0000 120 chr3L:139659-139779 1.0000 120 chrX:11797076-11797196 1.0000 120 chr3R:15660624-15660744 1.0000 120 chr2R:24188216-24188336 1.0000 120 chr3L:2893955-2894075 1.0000 120 chr3R:5570750-5570870 1.0000 120 chr2R:10798737-10798857 1.0000 120 chrX:16648241-16648361 1.0000 120 chr2R:16240707-16240827 1.0000 120 chr2L:13711709-13711829 1.0000 120 chrX:6050407-6050527 1.0000 120 chrX:17244995-17245115 1.0000 120 chrX:9635102-9635222 1.0000 120 chr3L:3947442-3947562 1.0000 120 chrX:7163650-7163770 1.0000 120 chr3R:16481112-16481232 1.0000 120 chr3R:25420492-25420612 1.0000 120 chrX:19170912-19171032 1.0000 120 chrX:9437263-9437383 1.0000 120 chr3L:3801841-3801961 1.0000 120 chr3R:22799428-22799548 1.0000 120 chr3L:14408819-14408939 1.0000 120 chr2L:6130651-6130771 1.0000 120 chr2R:12202925-12203045 1.0000 120 chrX:2194717-2194837 1.0000 120 chr2L:11211722-11211842 1.0000 120 chr3R:4833729-4833849 1.0000 120 chrX:8554405-8554525 1.0000 120 chrX:9639305-9639425 1.0000 120 chr3L:22634289-22634409 1.0000 120 chr2L:16664589-16664709 1.0000 120 chr4:721888-722008 1.0000 120 chr2L:12575236-12575356 1.0000 120 chr2R:21986946-21987066 1.0000 120 chr3R:10390201-10390321 1.0000 120 chrX:284352-284472 1.0000 120 chr3R:29816439-29816559 1.0000 120 chrX:21080503-21080623 1.0000 120 chr3R:10594550-10594670 1.0000 120 chrX:8116938-8117058 1.0000 120 chrX:6048918-6049038 1.0000 120 chr2L:12174914-12175034 1.0000 120 chr3L:19468924-19469044 1.0000 120 chr3R:15481811-15481931 1.0000 120 chr3R:29203764-29203884 1.0000 120 chr3L:23015857-23015977 1.0000 120 chr2L:5361599-5361719 1.0000 120 chrX:17687212-17687332 1.0000 120 chr3R:29503869-29503989 1.0000 120 chr3R:6706473-6706593 1.0000 120 chr3R:5246725-5246845 1.0000 120 chr3L:15467151-15467271 1.0000 120 chrX:340480-340600 1.0000 120 chr3L:4322217-4322337 1.0000 120 chr3R:10121429-10121549 1.0000 120 chr2R:6200775-6200895 1.0000 120 chr2R:10805255-10805375 1.0000 120 chrX:17691969-17692089 1.0000 120 chr2L:1036944-1037064 1.0000 120 chr2R:9237897-9238017 1.0000 120 chrX:6521007-6521127 1.0000 120 chrX:17763340-17763460 1.0000 120 chrX:13090952-13091072 1.0000 120 chrX:15091313-15091433 1.0000 120 chr2L:19457995-19458115 1.0000 120 chr2L:14274700-14274820 1.0000 120 chr3L:22722091-22722211 1.0000 120 chr3R:7851033-7851153 1.0000 120 chr2R:13235885-13236005 1.0000 120 chr4:1064945-1065065 1.0000 120 chr3R:6009829-6009949 1.0000 120 chr3L:3581762-3581882 1.0000 120 chr2L:1419775-1419895 1.0000 120 chr2L:13182572-13182692 1.0000 120 chr2L:7409735-7409855 1.0000 120 chr3L:14245891-14246011 1.0000 120 chr3L:22795795-22795915 1.0000 120 chr3L:20598773-20598893 1.0000 120 chr3R:11600556-11600676 1.0000 120 chr2R:20583573-20583693 1.0000 120 chr3R:12679023-12679143 1.0000 120 chr2R:21519105-21519225 1.0000 120 chr2L:14972997-14973117 1.0000 120 chr3L:8005651-8005771 1.0000 120 chr2R:24213912-24214032 1.0000 120 chr2R:7940651-7940771 1.0000 120 chrX:14933181-14933301 1.0000 120 chr2L:1574056-1574176 1.0000 120 chrX:7620292-7620412 1.0000 120 chr2R:9446827-9446947 1.0000 120 chr3L:11471871-11471991 1.0000 120 chr2R:19779920-19780040 1.0000 120 chrX:4542528-4542648 1.0000 120 chrX:19701727-19701847 1.0000 120 chr3L:19483125-19483245 1.0000 120 chr3R:26332467-26332587 1.0000 120 chrX:15107146-15107266 1.0000 120 chr3L:7238470-7238590 1.0000 120 chrX:12467332-12467452 1.0000 120 chr2R:18705886-18706006 1.0000 120 chrX:10002588-10002708 1.0000 120 chr3R:20307028-20307148 1.0000 120 chr3R:30306852-30306972 1.0000 120 chr3R:4527544-4527664 1.0000 120 chr2L:19565608-19565728 1.0000 120 chr3R:24523780-24523900 1.0000 120 chr3R:20154792-20154912 1.0000 120 chr3R:5061491-5061611 1.0000 120 chr2L:20494412-20494532 1.0000 120 chr3L:8229121-8229241 1.0000 120 chrX:10385127-10385247 1.0000 120 chrX:9705416-9705536 1.0000 120 chrX:898131-898251 1.0000 120 chr2L:16787711-16787831 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_stwl/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/stwl.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.205 G 0.212 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.205 G 0.212 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-1 width = 8 sites = 61 llr = 618 E-value = 5.7e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::6:: pos.-specific C :::::1aa probability G a:a:92:: matrix T :a:a1::: bits 2.3 * * * 2.1 * * ** 1.8 ***** ** 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.1 ***** ** (14.6 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19701727-19701847 10 1.00e-05 TAATGGCCA GTGTGACC AGGCACCGAT chr2R:24213912-24214032 37 1.00e-05 ATGAATAGCA GTGTGACC AAGGCTCCAA chr3L:20598773-20598893 28 1.00e-05 TCCGAGTTTG GTGTGACC AGAGCTGAAA chr3L:14245891-14246011 64 1.00e-05 AATTTCCTTA GTGTGACC GTAGTCAACA chr2L:7409735-7409855 60 1.00e-05 AACGGCTTTA GTGTGACC TCACCTAAGA chrX:6521007-6521127 59 1.00e-05 GAGTACCGTG GTGTGACC ATTCAGCATG chrX:17691969-17692089 74 1.00e-05 TGCTCAGGCT GTGTGACC AAGCGACAAT chr3L:19468924-19469044 10 1.00e-05 ttttccaca gtgtgacc gtagcagttt chrX:21080503-21080623 50 1.00e-05 CATTTATGTA GTGTGACC GTTCGTGTGC chr2L:12575236-12575356 27 1.00e-05 AACAATCTGA GTGTGACC CTGTGCCAAG chrX:2194717-2194837 14 1.00e-05 TTGCCGTTCA GTGTGACC GAGTGTGCAT chr3L:3801841-3801961 63 1.00e-05 TGGGGAGACA GTGTGACC AAAACCGCAT chr2L:18821-18941 98 1.00e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chr2R:21872338-21872458 61 1.00e-05 CTGTCGGCAA GTGTGACC AAAGTGCGTT chrX:18057668-18057788 59 1.00e-05 CAGCAAAAGA GTGTGACC AGTCGCGGCA chrX:8232982-8233102 50 1.00e-05 AATGGCGGAG GTGTGACC AAAGTGGCAT chr2R:6326708-6326828 88 1.00e-05 actgcatctg gtgtgacc ttacattggt chr2L:21726-21846 18 1.00e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chr2R:10959425-10959545 56 1.00e-05 CGCCTCATGA GTGTGACC ACAGTTGCGA chr3L:20743737-20743857 22 1.00e-05 AGCTTTTTGA GTGTGACC AGATGAGCTG chr2L:18321081-18321201 57 1.00e-05 TCCGTGCCAA GTGTGACC TTTCGCATCT chr3L:13299830-13299950 17 1.00e-05 GTTTAAAATA GTGTGACC ATTTTATTAG chr2L:5370753-5370873 71 1.00e-05 ATAGGCAACT GTGTGACC ATAACTTATG chr2R:23622062-23622182 76 1.00e-05 TCCAGGCGCA GTGTGACC AGACTGGCAA chr3R:22180175-22180295 64 1.00e-05 ACCAGTTTTA GTGTGACC ATCCCATTCA chrX:6361372-6361492 57 1.00e-05 GCCACTGCCA GTGTGACC GAAACTGCAT chr3L:8210735-8210855 21 1.00e-05 CAATGATTTA GTGTGACC AAATAAGCTT chrX:11659773-11659893 25 1.00e-05 GTTGAAAATA GTGTGACC TTGCAACGCA chr2R:21675014-21675134 67 1.00e-05 CGTTATTCAA GTGTGACC GAGCGTTAAT chr2R:23222145-23222265 73 1.00e-05 TCGCGGAGTA GTGTGACC AAGTCTGCTA chr3R:10591603-10591723 38 1.00e-05 ATGATTGCTG GTGTGACC AGACCGCTAA chr2L:5447380-5447500 17 1.00e-05 GCGCTAGCCA GTGTGACC ATGTGTGACC chr3R:19306578-19306698 45 1.00e-05 CGGGTGGTTA GTGTGACC GTAGGTGAAT chrX:19844149-19844269 16 1.00e-05 CTGATTTACA GTGTGACC GAAGGCCCAT chrX:4493653-4493773 67 1.00e-05 CGAATGAACA GTGTGACC TTGCTTAACA chr3L:11539622-11539742 8 1.00e-05 AACTTTA GTGTGACC AAGAAAATGT chr3R:10390201-10390321 38 1.74e-05 ATTTGCGTTG GTGTGGCC AGAGTGGGGA chr2L:13711709-13711829 8 1.74e-05 TTTGCCA GTGTGGCC AACGCCTGCT chrX:6363297-6363417 4 1.74e-05 CCA GTGTGGCC GAAGTCGCAA chr2L:13278536-13278656 23 1.74e-05 AGCTCGTTCA GTGTGGCC AAGGTCGAAA chrX:1216806-1216926 59 1.74e-05 CGAAATAATA GTGTGGCC TTGCTGCACT chr2R:17310480-17310600 96 1.74e-05 AACAGCTACA GTGTGGCC AACTAGATTT chr3L:10166604-10166724 58 1.74e-05 TGCCACTGCA GTGTGGCC ATGCGATCGG chr2R:18878754-18878874 41 1.74e-05 ATGAATGCCA GTGTGGCC GAATGCGTGT chr3R:5061491-5061611 22 2.45e-05 TGTAACGTCT GTGTGCCC GAGTGTGACT chr3R:10121429-10121549 8 2.45e-05 CAAATAA GTGTGCCC AAGTGCGCAA chrX:17244995-17245115 74 2.45e-05 CCGGATGGCA GTGTGCCC AAATGATAAA chrX:4627296-4627416 31 2.45e-05 GCGGAAAACG GTGTGCCC AGATGTAAAG chrX:8231380-8231500 3 2.45e-05 TA GTGTGCCC AGGATAAAAA chrX:17468501-17468621 63 2.45e-05 TGTGACTGTG GTGTGCCC AGCTATTAAT chrX:18993006-18993126 54 2.45e-05 TGAACGATTA GTGTGCCC AGACCTCGAT chr3L:8109027-8109147 24 3.46e-05 AAACCGACCA GTGTGTCC ACACCAGAAA chrX:20231842-20231962 73 3.46e-05 GAGGGCGCGT GTGTGTCC GCTTTTTAAT chr3R:21013926-21014046 26 3.46e-05 AAGACCATCA GTGTGTCC ACACTGCACT chr2L:5353622-5353742 46 4.86e-05 GACGGCGTAA GTGTTACC Atgtgtgctt chr3R:15682237-15682357 110 6.30e-05 CCATGTTACT GTGTGACT CAA chr2R:10798737-10798857 20 7.31e-05 TCCATGGCCA GTGTTGCC GTGCTGCACG chrX:11797076-11797196 64 7.31e-05 GTTACGGCAA GTGTTGCC CTATCGTTCC chr2L:3308653-3308773 22 7.31e-05 CGGCAGAAAA GTGTTGCC ACGTGTGTGT chr3R:29816439-29816559 14 8.37e-05 GTGACGACCA GTGTGGCT GCGCTAATGA chr2R:10679535-10679655 65 8.37e-05 ACTGGCCCCA GTGTGGCT GTACGGTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19701727-19701847 1e-05 9_[+1]_103 chr2R:24213912-24214032 1e-05 36_[+1]_76 chr3L:20598773-20598893 1e-05 27_[+1]_85 chr3L:14245891-14246011 1e-05 63_[+1]_49 chr2L:7409735-7409855 1e-05 59_[+1]_53 chrX:6521007-6521127 1e-05 58_[+1]_54 chrX:17691969-17692089 1e-05 73_[+1]_39 chr3L:19468924-19469044 1e-05 9_[+1]_103 chrX:21080503-21080623 1e-05 49_[+1]_63 chr2L:12575236-12575356 1e-05 26_[+1]_86 chrX:2194717-2194837 1e-05 13_[+1]_99 chr3L:3801841-3801961 1e-05 62_[+1]_50 chr2L:18821-18941 1e-05 97_[+1]_15 chr2R:21872338-21872458 1e-05 60_[+1]_52 chrX:18057668-18057788 1e-05 58_[+1]_54 chrX:8232982-8233102 1e-05 49_[+1]_63 chr2R:6326708-6326828 1e-05 87_[+1]_25 chr2L:21726-21846 1e-05 17_[+1]_95 chr2R:10959425-10959545 1e-05 55_[+1]_57 chr3L:20743737-20743857 1e-05 21_[+1]_91 chr2L:18321081-18321201 1e-05 56_[+1]_56 chr3L:13299830-13299950 1e-05 16_[+1]_96 chr2L:5370753-5370873 1e-05 70_[+1]_42 chr2R:23622062-23622182 1e-05 75_[+1]_37 chr3R:22180175-22180295 1e-05 63_[+1]_49 chrX:6361372-6361492 1e-05 56_[+1]_56 chr3L:8210735-8210855 1e-05 20_[+1]_92 chrX:11659773-11659893 1e-05 24_[+1]_88 chr2R:21675014-21675134 1e-05 66_[+1]_46 chr2R:23222145-23222265 1e-05 72_[+1]_40 chr3R:10591603-10591723 1e-05 37_[+1]_75 chr2L:5447380-5447500 1e-05 16_[+1]_96 chr3R:19306578-19306698 1e-05 44_[+1]_68 chrX:19844149-19844269 1e-05 15_[+1]_97 chrX:4493653-4493773 1e-05 66_[+1]_46 chr3L:11539622-11539742 1e-05 7_[+1]_105 chr3R:10390201-10390321 1.7e-05 37_[+1]_75 chr2L:13711709-13711829 1.7e-05 7_[+1]_105 chrX:6363297-6363417 1.7e-05 3_[+1]_109 chr2L:13278536-13278656 1.7e-05 22_[+1]_90 chrX:1216806-1216926 1.7e-05 58_[+1]_54 chr2R:17310480-17310600 1.7e-05 95_[+1]_17 chr3L:10166604-10166724 1.7e-05 57_[+1]_55 chr2R:18878754-18878874 1.7e-05 40_[+1]_72 chr3R:5061491-5061611 2.4e-05 21_[+1]_91 chr3R:10121429-10121549 2.4e-05 7_[+1]_105 chrX:17244995-17245115 2.4e-05 73_[+1]_39 chrX:4627296-4627416 2.4e-05 30_[+1]_82 chrX:8231380-8231500 2.4e-05 2_[+1]_110 chrX:17468501-17468621 2.4e-05 62_[+1]_50 chrX:18993006-18993126 2.4e-05 53_[+1]_59 chr3L:8109027-8109147 3.5e-05 23_[+1]_89 chrX:20231842-20231962 3.5e-05 72_[+1]_40 chr3R:21013926-21014046 3.5e-05 25_[+1]_87 chr2L:5353622-5353742 4.9e-05 45_[+1]_67 chr3R:15682237-15682357 6.3e-05 109_[+1]_3 chr2R:10798737-10798857 7.3e-05 19_[+1]_93 chrX:11797076-11797196 7.3e-05 63_[+1]_49 chr2L:3308653-3308773 7.3e-05 21_[+1]_91 chr3R:29816439-29816559 8.4e-05 13_[+1]_99 chr2R:10679535-10679655 8.4e-05 64_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=61 chrX:19701727-19701847 ( 10) GTGTGACC 1 chr2R:24213912-24214032 ( 37) GTGTGACC 1 chr3L:20598773-20598893 ( 28) GTGTGACC 1 chr3L:14245891-14246011 ( 64) GTGTGACC 1 chr2L:7409735-7409855 ( 60) GTGTGACC 1 chrX:6521007-6521127 ( 59) GTGTGACC 1 chrX:17691969-17692089 ( 74) GTGTGACC 1 chr3L:19468924-19469044 ( 10) GTGTGACC 1 chrX:21080503-21080623 ( 50) GTGTGACC 1 chr2L:12575236-12575356 ( 27) GTGTGACC 1 chrX:2194717-2194837 ( 14) GTGTGACC 1 chr3L:3801841-3801961 ( 63) GTGTGACC 1 chr2L:18821-18941 ( 98) GTGTGACC 1 chr2R:21872338-21872458 ( 61) GTGTGACC 1 chrX:18057668-18057788 ( 59) GTGTGACC 1 chrX:8232982-8233102 ( 50) GTGTGACC 1 chr2R:6326708-6326828 ( 88) GTGTGACC 1 chr2L:21726-21846 ( 18) GTGTGACC 1 chr2R:10959425-10959545 ( 56) GTGTGACC 1 chr3L:20743737-20743857 ( 22) GTGTGACC 1 chr2L:18321081-18321201 ( 57) GTGTGACC 1 chr3L:13299830-13299950 ( 17) GTGTGACC 1 chr2L:5370753-5370873 ( 71) GTGTGACC 1 chr2R:23622062-23622182 ( 76) GTGTGACC 1 chr3R:22180175-22180295 ( 64) GTGTGACC 1 chrX:6361372-6361492 ( 57) GTGTGACC 1 chr3L:8210735-8210855 ( 21) GTGTGACC 1 chrX:11659773-11659893 ( 25) GTGTGACC 1 chr2R:21675014-21675134 ( 67) GTGTGACC 1 chr2R:23222145-23222265 ( 73) GTGTGACC 1 chr3R:10591603-10591723 ( 38) GTGTGACC 1 chr2L:5447380-5447500 ( 17) GTGTGACC 1 chr3R:19306578-19306698 ( 45) GTGTGACC 1 chrX:19844149-19844269 ( 16) GTGTGACC 1 chrX:4493653-4493773 ( 67) GTGTGACC 1 chr3L:11539622-11539742 ( 8) GTGTGACC 1 chr3R:10390201-10390321 ( 38) GTGTGGCC 1 chr2L:13711709-13711829 ( 8) GTGTGGCC 1 chrX:6363297-6363417 ( 4) GTGTGGCC 1 chr2L:13278536-13278656 ( 23) GTGTGGCC 1 chrX:1216806-1216926 ( 59) GTGTGGCC 1 chr2R:17310480-17310600 ( 96) GTGTGGCC 1 chr3L:10166604-10166724 ( 58) GTGTGGCC 1 chr2R:18878754-18878874 ( 41) GTGTGGCC 1 chr3R:5061491-5061611 ( 22) GTGTGCCC 1 chr3R:10121429-10121549 ( 8) GTGTGCCC 1 chrX:17244995-17245115 ( 74) GTGTGCCC 1 chrX:4627296-4627416 ( 31) GTGTGCCC 1 chrX:8231380-8231500 ( 3) GTGTGCCC 1 chrX:17468501-17468621 ( 63) GTGTGCCC 1 chrX:18993006-18993126 ( 54) GTGTGCCC 1 chr3L:8109027-8109147 ( 24) GTGTGTCC 1 chrX:20231842-20231962 ( 73) GTGTGTCC 1 chr3R:21013926-21014046 ( 26) GTGTGTCC 1 chr2L:5353622-5353742 ( 46) GTGTTACC 1 chr3R:15682237-15682357 ( 110) GTGTGACT 1 chr2R:10798737-10798857 ( 20) GTGTTGCC 1 chrX:11797076-11797196 ( 64) GTGTTGCC 1 chr2L:3308653-3308773 ( 22) GTGTTGCC 1 chr3R:29816439-29816559 ( 14) GTGTGGCT 1 chr2R:10679535-10679655 ( 65) GTGTGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.54372 E= 5.7e-067 -1257 -1257 224 -1257 -1257 -1257 -1257 177 -1257 -1257 224 -1257 -1257 -1257 -1257 177 -1257 -1257 214 -216 110 -83 1 -258 -1257 229 -1257 -1257 -1257 222 -1257 -258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.7e-067 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.934426 0.065574 0.622951 0.114754 0.213115 0.049180 0.000000 1.000000 0.000000 0.000000 0.000000 0.950820 0.000000 0.049180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTG[AG]CC -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CMACACTG MEME-2 width = 8 sites = 87 llr = 725 E-value = 1.3e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :69:8::2 pos.-specific C 74:a1a:: probability G ::1::::8 matrix T 3:::1:a: bits 2.3 * * 2.1 * * 1.8 * ** 1.6 * ** Relative 1.4 ** ** Entropy 1.1 * ** *** (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAACACTG consensus TC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20307028-20307148 39 1.31e-05 CATGATTAAC CAACACTG GAATAGGTTT chrX:14933181-14933301 105 1.31e-05 TATTACTTTA CAACACTG TTTTTTCG chr2L:13182572-13182692 82 1.31e-05 ATGGGCCTTA CAACACTG GTTGTTACTG chr3R:7851033-7851153 110 1.31e-05 GCAAGCCACC CAACACTG Gca chr2R:6200775-6200895 59 1.31e-05 TTACATTTTA CAACACTG GATCGAGGGG chrX:284352-284472 74 1.31e-05 ATTCGCTTTT CAACACTG AATTTCCCAC chr2R:12202925-12203045 84 1.31e-05 ATGGTTTCTA CAACACTG TATACACACA chr2L:1500470-1500590 50 1.31e-05 GACTATTTTG CAACACTG ATTGGTTGGT chrX:17298354-17298474 58 1.31e-05 GTGGGTGTGG CAACACTG TCTTGCTGCT chr3L:14219520-14219640 33 1.31e-05 TACGAATTTC CAACACTG CTAAGTCACA chrX:20231842-20231962 99 1.31e-05 ATTCGCTTTC CAACACTG ACACCTCACT chr3L:22094429-22094549 41 1.31e-05 TTGCACTACA CAACACTG CATTTGGCGG chr3R:12310164-12310284 75 1.31e-05 AGTTCTTCTC CAACACTG GAAAAGAAAA chr2R:7377951-7378071 49 1.31e-05 AATTCCTTTC CAACACTG TAAGGTTAAT chr3R:16295875-16295995 69 1.31e-05 ATCACATTTA CAACACTG GTAGCCGAGG chr3L:7915940-7916060 95 1.31e-05 AAGAAATTTA CAACACTG GTTGGTAGTA chr3L:2830797-2830917 5 1.31e-05 TTTA CAACACTG TAATTTCATT chr3L:13884599-13884719 38 1.31e-05 CTACCCTATC CAACACTG TTCAGGATGG chr2L:1909213-1909333 54 1.31e-05 ATCAATTTAC CAACACTG GAAGAGCTAG chr3R:4570475-4570595 47 1.31e-05 ATTCATCTTC CAACACTG GAAACTCTTA chr3L:19142726-19142846 75 1.31e-05 TGGTATCTGG CAACACTG AGTGCCTGTT chrX:8137424-8137544 86 1.31e-05 ATTCACTGCC CAACACTG GCCAGGCGGT chr3R:10594550-10594670 61 2.24e-05 AGGTGCAAGG CCACACTG ATTAAAGAAC chr2R:10679535-10679655 51 2.24e-05 ACGCAGTTGG CCACACTG GCCCCAGTGT chrX:10929781-10929901 110 2.24e-05 ATCAAATTGG CCACACTG CTC chrX:4627296-4627416 70 2.24e-05 AGGCATTTGG CCACACTG CGATATAGAT chr2L:21905278-21905398 44 2.24e-05 CTGCATTTAT CCACACTG TTAACGGCTC chrX:4493653-4493773 47 2.24e-05 AGGAAACAGG CCACACTG GGCGAATGAA chrX:898131-898251 94 5.44e-05 TGTGCTTCGG TCACACTG CGTGTGCTTT chrX:15107146-15107266 111 5.44e-05 TCATAGATGG TCACACTG GG chr3L:8005651-8005771 78 5.44e-05 GTTAGCATGG TCACACTG CGCACTGCAG chrX:17691969-17692089 58 5.44e-05 GATAACAGGG TCACACTG CTCAGGCTGT chrX:8116938-8117058 92 5.44e-05 ATTTACTTGG TCACACTG TCCACCACCA chrX:9437263-9437383 67 5.44e-05 GCCAGTCTGG TCACACTG CCTGCTCTTC chrX:6050407-6050527 48 5.44e-05 ACTGTGTTGG TCACACTG CAGCGTTGGC chrX:5839884-5840004 72 5.44e-05 CGACATGTGG TCACACTG GTCCGAATGG chrX:10729335-10729455 19 5.44e-05 GTTTTACTGG TCACACTG GCACAGGAGA chrX:22499696-22499816 61 5.44e-05 GCAATGCTGG TCACACTG TCTCAGTCAC chr3R:30306644-30306764 76 5.44e-05 AAGCGGAAGG TCACACTG CAGCAAAGAC chrX:17468501-17468621 47 5.44e-05 CCTCGCAAGG TCACACTG TGACTGTGGT chr3L:1119941-1120061 41 5.44e-05 CTTAGCAAGG TCACACTG CTTAGTCAAT chr3R:4728576-4728696 62 5.44e-05 AGCGCTGGGG TCACACTG GTGGGCGGAC chr3R:19291522-19291642 93 5.44e-05 GCTACATTGG TCACACTG CATGATAGTC chr3L:8012519-8012639 82 5.44e-05 TGAAGGTTTG TCACACTG ACCGTTTTCT chrX:5922196-5922316 52 5.44e-05 GGGCGTTTGG TCACACTG CACCGAACTT chr3R:12375379-12375499 76 5.44e-05 TGACGATCGG TCACACTG AAGATAAGCG chrX:4542528-4542648 83 8.19e-05 CGTCGGTGTG CAGCACTG GATCGTCCAG chr2R:13235885-13236005 89 8.19e-05 AATCGCTTTG CAGCACTG TCTCAGTTGG chr2L:12575236-12575356 90 8.19e-05 TTTTTGGAGA CAGCACTG CCAGTCAGCA chr4:721888-722008 49 8.19e-05 AAACATTATC CAACACTA CTGAAGTGAA chr3R:4833729-4833849 75 8.19e-05 GCTGAGTTGG CAGCACTG ATTGTAAGTC chrX:9635102-9635222 52 8.19e-05 CTAAACTTTT CAACACTA TAACATTAGC chr2L:7226714-7226834 58 8.19e-05 GTGGACTGGG CAGCACTG CAAACGCAAA chr3R:15839438-15839558 67 8.19e-05 TAAGCTTTTA CAACACTA GCCGGGGAGT chr3L:508048-508168 52 8.19e-05 AGGTCGTTTC CAACACTA TTGGTGCCAT chr3L:10686757-10686877 78 8.19e-05 CATTGCTACC CAACACTA CTCACCTGTC chrX:14265283-14265403 99 8.19e-05 CAGCATTCAA CAGCACTG TTAATGCCAA chr3L:10991761-10991881 100 1.01e-04 TGCACGTTGG CCACACTA TTTAAATGTG chrX:17361250-17361370 53 1.01e-04 AATTACCTGG Ccacacta aacacactcc chr2R:9446827-9446947 73 1.15e-04 ATAAATATGG CAACTCTG CTCGTAAAAA chr2L:1419775-1419895 87 1.15e-04 CCTGCGAATG CAACTCTG GAGATGGACG chr3L:15467151-15467271 65 1.15e-04 ATTAGCGTGA CAACTCTG TCGCACACAG chrX:7163650-7163770 52 1.15e-04 AGGTTTATGG CAACTCTG GTGCACGTGT chr3R:15660624-15660744 95 1.15e-04 AGTTGGGTGG CAACTCTG TTCGATTTGC chr3L:4069241-4069361 67 1.15e-04 TAGATGGTGA CAACTCTG GTAGGGGTTG chr2L:2920318-2920438 50 1.15e-04 GCTACTCTGG CAACTCTG CATCATTTAG chr3L:23015857-23015977 67 1.33e-04 CAATCAAATA CAACCCTG GCTCTCTTAT chr3L:18154288-18154408 40 1.33e-04 TTTTCCATGG CAACCCTG ACAACCCTGG chr3R:4527544-4527664 55 1.79e-04 ATTCGCTACC TAACACTA CGTTGAAACG chr3L:3466318-3466438 86 1.79e-04 CGCAGTGTGG TAGCACTG GCCGGAACCG chr2L:17715971-17716091 76 1.79e-04 CCCAAAGTGT TAGCACTG GTTACGTTTT chr3R:5061491-5061611 108 2.07e-04 TTTGCATGTG TCACACTA CTTTG chrX:6048918-6049038 80 2.07e-04 GCAACGTTGG TCACACTA TTCGCAGACT chrX:8510788-8510908 97 2.07e-04 GAGGTTTTGG TCACACTA AAACACTAGA chr3L:17245704-17245824 43 2.07e-04 ctTGTTTCCC TCGCACTG CTATTTCATT chrX:20638185-20638305 69 2.07e-04 AGGGGCCTGG TCACACTA AGCAGTTCAT chr3L:8843180-8843300 43 2.07e-04 ATTACCATGG TCACACTA TTCGGCATCC chr3L:19483125-19483245 75 2.39e-04 CGTAAGCCAG CAGCACTA ATGCATACTT chrX:10002588-10002708 47 2.93e-04 CATTGTTAAC CAACACTT GATTGTTTTG chr3R:15481811-15481931 96 2.93e-04 TGACCACTTT CAACACTT AGTTTGTGGC chrX:17940385-17940505 101 2.93e-04 TCGCATTTTG CAACACTT AAACCTAGTT chr3R:5570750-5570870 52 3.63e-04 ACTCACCTGG CCACTCTA GCAATATCTG chr3L:20743737-20743857 74 3.63e-04 AGGCCTCTGG CCACTCTA AATTAATCAG chr3R:22799428-22799548 82 3.83e-04 TGTGTGATGG CAACCCTA TCGCCGCGCA chr3L:8109027-8109147 83 3.83e-04 GAACTCAATT CAGCCCTG AAATGGAAAG chr3R:24065895-24066015 77 3.83e-04 TTGGCGTTGG CAACCCTA CGCAAAACAG chr3R:6009829-6009949 64 4.10e-04 GCAAAGTTTC GAACACTG AATTTGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20307028-20307148 1.3e-05 38_[+2]_74 chrX:14933181-14933301 1.3e-05 104_[+2]_8 chr2L:13182572-13182692 1.3e-05 81_[+2]_31 chr3R:7851033-7851153 1.3e-05 109_[+2]_3 chr2R:6200775-6200895 1.3e-05 58_[+2]_54 chrX:284352-284472 1.3e-05 73_[+2]_39 chr2R:12202925-12203045 1.3e-05 83_[+2]_29 chr2L:1500470-1500590 1.3e-05 49_[+2]_63 chrX:17298354-17298474 1.3e-05 57_[+2]_55 chr3L:14219520-14219640 1.3e-05 32_[+2]_80 chrX:20231842-20231962 1.3e-05 98_[+2]_14 chr3L:22094429-22094549 1.3e-05 40_[+2]_72 chr3R:12310164-12310284 1.3e-05 74_[+2]_38 chr2R:7377951-7378071 1.3e-05 48_[+2]_64 chr3R:16295875-16295995 1.3e-05 68_[+2]_44 chr3L:7915940-7916060 1.3e-05 94_[+2]_18 chr3L:2830797-2830917 1.3e-05 4_[+2]_108 chr3L:13884599-13884719 1.3e-05 37_[+2]_75 chr2L:1909213-1909333 1.3e-05 53_[+2]_59 chr3R:4570475-4570595 1.3e-05 46_[+2]_66 chr3L:19142726-19142846 1.3e-05 74_[+2]_38 chrX:8137424-8137544 1.3e-05 85_[+2]_27 chr3R:10594550-10594670 2.2e-05 60_[+2]_52 chr2R:10679535-10679655 2.2e-05 50_[+2]_62 chrX:10929781-10929901 2.2e-05 109_[+2]_3 chrX:4627296-4627416 2.2e-05 69_[+2]_43 chr2L:21905278-21905398 2.2e-05 43_[+2]_69 chrX:4493653-4493773 2.2e-05 46_[+2]_66 chrX:898131-898251 5.4e-05 93_[+2]_19 chrX:15107146-15107266 5.4e-05 110_[+2]_2 chr3L:8005651-8005771 5.4e-05 77_[+2]_35 chrX:17691969-17692089 5.4e-05 57_[+2]_55 chrX:8116938-8117058 5.4e-05 91_[+2]_21 chrX:9437263-9437383 5.4e-05 66_[+2]_46 chrX:6050407-6050527 5.4e-05 47_[+2]_65 chrX:5839884-5840004 5.4e-05 71_[+2]_41 chrX:10729335-10729455 5.4e-05 18_[+2]_94 chrX:22499696-22499816 5.4e-05 60_[+2]_52 chr3R:30306644-30306764 5.4e-05 75_[+2]_37 chrX:17468501-17468621 5.4e-05 46_[+2]_66 chr3L:1119941-1120061 5.4e-05 40_[+2]_72 chr3R:4728576-4728696 5.4e-05 61_[+2]_51 chr3R:19291522-19291642 5.4e-05 92_[+2]_20 chr3L:8012519-8012639 5.4e-05 81_[+2]_31 chrX:5922196-5922316 5.4e-05 51_[+2]_61 chr3R:12375379-12375499 5.4e-05 75_[+2]_37 chrX:4542528-4542648 8.2e-05 82_[+2]_30 chr2R:13235885-13236005 8.2e-05 88_[+2]_24 chr2L:12575236-12575356 8.2e-05 89_[+2]_23 chr4:721888-722008 8.2e-05 48_[+2]_64 chr3R:4833729-4833849 8.2e-05 74_[+2]_38 chrX:9635102-9635222 8.2e-05 51_[+2]_61 chr2L:7226714-7226834 8.2e-05 57_[+2]_55 chr3R:15839438-15839558 8.2e-05 66_[+2]_46 chr3L:508048-508168 8.2e-05 51_[+2]_61 chr3L:10686757-10686877 8.2e-05 77_[+2]_35 chrX:14265283-14265403 8.2e-05 98_[+2]_14 chr3L:10991761-10991881 0.0001 99_[+2]_13 chrX:17361250-17361370 0.0001 52_[+2]_60 chr2R:9446827-9446947 0.00011 72_[+2]_40 chr2L:1419775-1419895 0.00011 86_[+2]_26 chr3L:15467151-15467271 0.00011 64_[+2]_48 chrX:7163650-7163770 0.00011 51_[+2]_61 chr3R:15660624-15660744 0.00011 94_[+2]_18 chr3L:4069241-4069361 0.00011 66_[+2]_46 chr2L:2920318-2920438 0.00011 49_[+2]_63 chr3L:23015857-23015977 0.00013 66_[+2]_46 chr3L:18154288-18154408 0.00013 39_[+2]_73 chr3R:4527544-4527664 0.00018 54_[+2]_58 chr3L:3466318-3466438 0.00018 85_[+2]_27 chr2L:17715971-17716091 0.00018 75_[+2]_37 chr3R:5061491-5061611 0.00021 107_[+2]_5 chrX:6048918-6049038 0.00021 79_[+2]_33 chrX:8510788-8510908 0.00021 96_[+2]_16 chr3L:17245704-17245824 0.00021 42_[+2]_70 chrX:20638185-20638305 0.00021 68_[+2]_44 chr3L:8843180-8843300 0.00021 42_[+2]_70 chr3L:19483125-19483245 0.00024 74_[+2]_38 chrX:10002588-10002708 0.00029 46_[+2]_66 chr3R:15481811-15481931 0.00029 95_[+2]_17 chrX:17940385-17940505 0.00029 100_[+2]_12 chr3R:5570750-5570870 0.00036 51_[+2]_61 chr3L:20743737-20743857 0.00036 73_[+2]_39 chr3R:22799428-22799548 0.00038 81_[+2]_31 chr3L:8109027-8109147 0.00038 82_[+2]_30 chr3R:24065895-24066015 0.00038 76_[+2]_36 chr3R:6009829-6009949 0.00041 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMACACTG width=8 seqs=87 chr3R:20307028-20307148 ( 39) CAACACTG 1 chrX:14933181-14933301 ( 105) CAACACTG 1 chr2L:13182572-13182692 ( 82) CAACACTG 1 chr3R:7851033-7851153 ( 110) CAACACTG 1 chr2R:6200775-6200895 ( 59) CAACACTG 1 chrX:284352-284472 ( 74) CAACACTG 1 chr2R:12202925-12203045 ( 84) CAACACTG 1 chr2L:1500470-1500590 ( 50) CAACACTG 1 chrX:17298354-17298474 ( 58) CAACACTG 1 chr3L:14219520-14219640 ( 33) CAACACTG 1 chrX:20231842-20231962 ( 99) CAACACTG 1 chr3L:22094429-22094549 ( 41) CAACACTG 1 chr3R:12310164-12310284 ( 75) CAACACTG 1 chr2R:7377951-7378071 ( 49) CAACACTG 1 chr3R:16295875-16295995 ( 69) CAACACTG 1 chr3L:7915940-7916060 ( 95) CAACACTG 1 chr3L:2830797-2830917 ( 5) CAACACTG 1 chr3L:13884599-13884719 ( 38) CAACACTG 1 chr2L:1909213-1909333 ( 54) CAACACTG 1 chr3R:4570475-4570595 ( 47) CAACACTG 1 chr3L:19142726-19142846 ( 75) CAACACTG 1 chrX:8137424-8137544 ( 86) CAACACTG 1 chr3R:10594550-10594670 ( 61) CCACACTG 1 chr2R:10679535-10679655 ( 51) CCACACTG 1 chrX:10929781-10929901 ( 110) CCACACTG 1 chrX:4627296-4627416 ( 70) CCACACTG 1 chr2L:21905278-21905398 ( 44) CCACACTG 1 chrX:4493653-4493773 ( 47) CCACACTG 1 chrX:898131-898251 ( 94) TCACACTG 1 chrX:15107146-15107266 ( 111) TCACACTG 1 chr3L:8005651-8005771 ( 78) TCACACTG 1 chrX:17691969-17692089 ( 58) TCACACTG 1 chrX:8116938-8117058 ( 92) TCACACTG 1 chrX:9437263-9437383 ( 67) TCACACTG 1 chrX:6050407-6050527 ( 48) TCACACTG 1 chrX:5839884-5840004 ( 72) TCACACTG 1 chrX:10729335-10729455 ( 19) TCACACTG 1 chrX:22499696-22499816 ( 61) TCACACTG 1 chr3R:30306644-30306764 ( 76) TCACACTG 1 chrX:17468501-17468621 ( 47) TCACACTG 1 chr3L:1119941-1120061 ( 41) TCACACTG 1 chr3R:4728576-4728696 ( 62) TCACACTG 1 chr3R:19291522-19291642 ( 93) TCACACTG 1 chr3L:8012519-8012639 ( 82) TCACACTG 1 chrX:5922196-5922316 ( 52) TCACACTG 1 chr3R:12375379-12375499 ( 76) TCACACTG 1 chrX:4542528-4542648 ( 83) CAGCACTG 1 chr2R:13235885-13236005 ( 89) CAGCACTG 1 chr2L:12575236-12575356 ( 90) CAGCACTG 1 chr4:721888-722008 ( 49) CAACACTA 1 chr3R:4833729-4833849 ( 75) CAGCACTG 1 chrX:9635102-9635222 ( 52) CAACACTA 1 chr2L:7226714-7226834 ( 58) CAGCACTG 1 chr3R:15839438-15839558 ( 67) CAACACTA 1 chr3L:508048-508168 ( 52) CAACACTA 1 chr3L:10686757-10686877 ( 78) CAACACTA 1 chrX:14265283-14265403 ( 99) CAGCACTG 1 chr3L:10991761-10991881 ( 100) CCACACTA 1 chrX:17361250-17361370 ( 53) CCACACTA 1 chr2R:9446827-9446947 ( 73) CAACTCTG 1 chr2L:1419775-1419895 ( 87) CAACTCTG 1 chr3L:15467151-15467271 ( 65) CAACTCTG 1 chrX:7163650-7163770 ( 52) CAACTCTG 1 chr3R:15660624-15660744 ( 95) CAACTCTG 1 chr3L:4069241-4069361 ( 67) CAACTCTG 1 chr2L:2920318-2920438 ( 50) CAACTCTG 1 chr3L:23015857-23015977 ( 67) CAACCCTG 1 chr3L:18154288-18154408 ( 40) CAACCCTG 1 chr3R:4527544-4527664 ( 55) TAACACTA 1 chr3L:3466318-3466438 ( 86) TAGCACTG 1 chr2L:17715971-17716091 ( 76) TAGCACTG 1 chr3R:5061491-5061611 ( 108) TCACACTA 1 chrX:6048918-6049038 ( 80) TCACACTA 1 chrX:8510788-8510908 ( 97) TCACACTA 1 chr3L:17245704-17245824 ( 43) TCGCACTG 1 chrX:20638185-20638305 ( 69) TCACACTA 1 chr3L:8843180-8843300 ( 43) TCACACTA 1 chr3L:19483125-19483245 ( 75) CAGCACTA 1 chrX:10002588-10002708 ( 47) CAACACTT 1 chr3R:15481811-15481931 ( 96) CAACACTT 1 chrX:17940385-17940505 ( 101) CAACACTT 1 chr3R:5570750-5570870 ( 52) CCACTCTA 1 chr3L:20743737-20743857 ( 74) CCACTCTA 1 chr3R:22799428-22799548 ( 82) CAACCCTA 1 chr3L:8109027-8109147 ( 83) CAGCCCTG 1 chr3R:24065895-24066015 ( 77) CAACCCTA 1 chr3R:6009829-6009949 ( 64) GAACACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.68232 E= 1.3e-046 -1309 173 -420 8 107 93 -1309 -1309 159 -1309 -74 -1309 -1309 229 -1309 -1309 153 -183 -1309 -151 -1309 229 -1309 -1309 -1309 -1309 -1309 177 -49 -1309 184 -309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 1.3e-046 0.000000 0.678161 0.011494 0.310345 0.609195 0.390805 0.000000 0.000000 0.873563 0.000000 0.126437 0.000000 0.000000 1.000000 0.000000 0.000000 0.839080 0.057471 0.000000 0.103448 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.206897 0.000000 0.758621 0.034483 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACACTG MEME-2 regular expression -------------------------------------------------------------------------------- [CT][AC]ACACT[GA] -------------------------------------------------------------------------------- Time 13.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGTTG MEME-3 width = 8 sites = 78 llr = 636 E-value = 2.5e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a:2:::1 pos.-specific C 6::1:2:: probability G 1:a1a:29 matrix T 2::7:88: bits 2.3 * * 2.1 * * 1.8 ** * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.1 ** **** (11.8 bits) 0.9 ** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGTTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:1064945-1065065 64 1.44e-05 GAAATTGGAC CAGTGTTG GTAAAGGTAA chr3L:22722091-22722211 8 1.44e-05 CTATCGA CAGTGTTG GGTAAATTTG chr3R:5246725-5246845 68 1.44e-05 GGTATTAAGC CAGTGTTG AAAAACTTTA chr3R:29503869-29503989 100 1.44e-05 CTGATATGTC CAGTGTTG ACTAGTGCTG chr3R:29203764-29203884 29 1.44e-05 TCAACGCAAC CAGTGTTG GAAAGCTCTG chr2L:16664589-16664709 33 1.44e-05 TCTGGGTGGC CAGTGTTG GCTAACAGTT chr2L:11211722-11211842 51 1.44e-05 TGCAGTTGTG CAGTGTTG AAAAATCAAA chr2R:12202925-12203045 10 1.44e-05 TTAGGTAAA CAGTGTTG TCAACTTGTC chrX:19170912-19171032 32 1.44e-05 CACTGCCGAC CAGTGTTG TACAATCGAT chr3R:25420492-25420612 63 1.44e-05 ATATGAACTT CAGTGTTG GCAAAGGTtt chrX:16648241-16648361 22 1.44e-05 ACACTCCGGT CAGTGTTG CGAAATGGAA chr2R:24188216-24188336 35 1.44e-05 ATTTTCCGGC CAGTGTTG GTAAACCCAC chr3R:20000026-20000146 68 1.44e-05 TGATTGAGTT CAGTGTTG TAGAGTGGAA chr3L:2107635-2107755 27 1.44e-05 TTCTCACGCA CAGTGTTG TAAAGCGTCG chr2R:24892239-24892359 87 1.44e-05 GTGATTGAGC CAGTGTTG GGAAGTCGAT chrX:22981647-22981767 96 1.44e-05 CAGCTCACTC CAGTGTTG ATTAATATAT chr2L:16747284-16747404 74 1.44e-05 AGCAGAAGTT CAGTGTTG ATAAACGATA chr3L:14803367-14803487 83 2.44e-05 GAACCATGAT CAGTGCTG AAAAACGATC chr2L:15118161-15118281 61 2.44e-05 GGTCAGTATT CAGTGCTG TAAGTCGTTG chr3R:29206304-29206424 53 2.44e-05 GCTGCACTCG CAGTGCTG GACAACGCTA chr2L:10311124-10311244 68 2.44e-05 AAGTCGCTGC CAGTGCTG AAAACGCAAT chrX:4911199-4911319 97 2.44e-05 GCAGCGAATA CAGTGCTG CAAAGGGCTT chr3L:3466318-3466438 78 3.48e-05 TTTGGCTTCG CAGTGTGG TAGCACTGGC chr3L:10166604-10166724 20 3.48e-05 GCTTCACATT CAGTGTGG CCAGATCGGC chrX:6361372-6361492 23 3.48e-05 TTGGAACTGC CAGTGTGG CCGAAGTCGC chr2L:5353622-5353742 78 3.48e-05 ttgagtgtgc cagtgtgg ctgtgtgtgt chr2R:21675014-21675134 29 3.48e-05 CTAACACAGT CAGTGTGG ACGTGGCAGG chr3R:26332467-26332587 79 4.90e-05 AAGCGATCAT CAGAGTTG CCACATCGCA chr3L:15467151-15467271 2 4.90e-05 C CAGAGTTG TCACAGTGGT chr3L:13031455-13031575 66 4.90e-05 AAAAAAGACA CAGAGTTG TAAAGAAAAC chr3R:11147579-11147699 50 4.90e-05 CATGGAAGCA CAGAGTTG AAATTAGTAA chr3R:24065895-24066015 92 4.90e-05 CTACGCAAAA CAGAGTTG CACGTAACGC chr3R:6436746-6436866 82 4.90e-05 CAATACTGGA CAGAGTTG CGTGCAATAT chr2L:12636323-12636443 11 4.90e-05 AAACAACGAC CAGAGTTG CCAAGTCAAT chr3R:15682237-15682357 92 4.90e-05 ATGCAACTTC CAGAGTTG CCATGTTACT chr3L:16566938-16567058 48 4.90e-05 GCATTCTAAG CAGAGTTG CCAGCCTGGC chr3R:24523780-24523900 93 6.97e-05 AATCAAAGAA TAGTGTTG TAAATGATCA chr2L:19565608-19565728 36 6.97e-05 AATTTTAGTT TAGTGTTG ATAAGTGCAA chr3R:20307028-20307148 63 6.97e-05 GTTTCTAATT TAGTGTTG GTATTCCATA chr3L:22795795-22795915 63 6.97e-05 CGAAAATTCG TAGTGTTG TATAATGCCA chr3L:20204008-20204128 75 6.97e-05 TTTCATTCGA TAGTGTTG TAAGATTAAT chr3L:13223736-13223856 45 6.97e-05 GGCAGCGTGA TAGTGTTG GTAACTGTTT chr2L:3308653-3308773 85 6.97e-05 CTTATCGTAA TAGTGTTG CTCTTTTCTA chr3L:19142726-19142846 22 6.97e-05 GTACAAAACT TAGTGTTG GATAATGCCT chrX:4542528-4542648 25 8.45e-05 AAATCTTTTT GAGTGTTG GGTAGTTAAT chr2L:19457995-19458115 53 8.45e-05 TATGGTAATT GAGTGTTG GACAACGCAT chrX:14265283-14265403 52 8.45e-05 GAATGCTGTT GAGTGTTG TGAAGTGTAA chr2L:7409735-7409855 31 1.12e-04 TGGCGTAGTG CAGCGTTG CCAGACGTTG chrX:6050407-6050527 56 1.12e-04 GGTCACACTG CAGCGTTG GCAGATAACA chrX:15493047-15493167 105 1.12e-04 GCACTGAGCG CAGGGTTG CTCTTTGA chr2R:21986946-21987066 32 1.22e-04 CCCTTTCACG CAGAGCTG CATTTCGTCG chrX:9705416-9705536 76 1.36e-04 GAATTTCGTA TAGTGCTG GCCAGGGATA chr3L:11471871-11471991 100 1.36e-04 ACTGAAGTGA TAGTGCTG CCAGATCAGC chr3R:11600556-11600676 21 1.36e-04 CAATTATCGA TAGTGCTG GCCTGAGCCC chr2R:19779920-19780040 42 1.67e-04 AGAAAAATGA AAGTGTTG TGTAAACACT chrX:17763340-17763460 89 1.67e-04 GTTTAAAAAG AAGTGTTG GATAATGCTA chrX:17548929-17549049 37 1.67e-04 AGTGTATGAA AAGTGTTG ACAAACACGC chr3L:11539622-11539742 44 1.82e-04 CATTGTACTT TAGTGTGG CCAAATATCT chr3L:139659-139779 86 2.02e-04 ATATGTATAT TAGAGTTG TTGTGGCCAA chr3L:20598773-20598893 63 2.43e-04 ATCCTGCTTG GAGTGTGG CGGTAGTTTG chrX:2194717-2194837 50 2.43e-04 AGGACATATC GAGTGTGG CCAGTTGCTA chrX:18057668-18057788 26 2.43e-04 CCGCTAATCG CAGTGTTA CCAGCGGCCC chr2L:13278536-13278656 69 2.43e-04 ACTGTGAGGT CAGTGTTA CCATCAGTTT chr3R:6010133-6010253 95 2.43e-04 CTTTATCTAG CAGTGTTA TACAGGTGCA chr2R:17310480-17310600 59 2.43e-04 TGCGTGGGAT GAGTGTGG CAGTGGTAAT chr2R:10959425-10959545 4 2.43e-04 CTC GAGTGTGG CCAGATCACG chrX:8231380-8231500 30 2.43e-04 ACTGGGCCAC CAGTGTTA CCAGTGCACA chr2R:18878754-18878874 67 2.43e-04 GTGTGAGTGT GAGTGTGG CTGCCTTCTA chr2L:1036944-1037064 18 2.72e-04 TTCTTCAGAG CAGCGCTG CTAACGCCTA chr3R:10390201-10390321 83 2.72e-04 GTGGTGTGGC CAGCGCTG CAAATGAGTA chr2L:7315688-7315808 98 2.72e-04 AATCGGTAAC CAGGGCTG GAAAACATTT chrX:22575221-22575341 48 2.72e-04 TCTCTTGAGC CAGGGCTG GCAACTCCTC chr3L:15357579-15357699 41 3.48e-04 ATACAGGGAC TAGGGTTG CCACATGCAT chrX:12467332-12467452 47 3.77e-04 TGTCATGGAG TAGAGCTG CAATGCGATA chr3L:3947442-3947562 18 3.77e-04 AAACGGGTAT TAGAGCTG CCAGATCGTG chr2R:23222145-23222265 41 3.77e-04 TAAAAGCGAT AAGTGTGG CCGAGGCCAT chr2R:13235885-13236005 12 3.97e-04 TCCTAACGTA AAGAGTTG TGTTCTAACC chr3L:19468924-19469044 46 4.11e-04 ttgtggaagt tagagtgg tcttggcact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:1064945-1065065 1.4e-05 63_[+3]_49 chr3L:22722091-22722211 1.4e-05 7_[+3]_105 chr3R:5246725-5246845 1.4e-05 67_[+3]_45 chr3R:29503869-29503989 1.4e-05 99_[+3]_13 chr3R:29203764-29203884 1.4e-05 28_[+3]_84 chr2L:16664589-16664709 1.4e-05 32_[+3]_80 chr2L:11211722-11211842 1.4e-05 50_[+3]_62 chr2R:12202925-12203045 1.4e-05 9_[+3]_103 chrX:19170912-19171032 1.4e-05 31_[+3]_81 chr3R:25420492-25420612 1.4e-05 62_[+3]_50 chrX:16648241-16648361 1.4e-05 21_[+3]_91 chr2R:24188216-24188336 1.4e-05 34_[+3]_78 chr3R:20000026-20000146 1.4e-05 67_[+3]_45 chr3L:2107635-2107755 1.4e-05 26_[+3]_86 chr2R:24892239-24892359 1.4e-05 86_[+3]_26 chrX:22981647-22981767 1.4e-05 95_[+3]_17 chr2L:16747284-16747404 1.4e-05 73_[+3]_39 chr3L:14803367-14803487 2.4e-05 82_[+3]_30 chr2L:15118161-15118281 2.4e-05 60_[+3]_52 chr3R:29206304-29206424 2.4e-05 52_[+3]_60 chr2L:10311124-10311244 2.4e-05 67_[+3]_45 chrX:4911199-4911319 2.4e-05 96_[+3]_16 chr3L:3466318-3466438 3.5e-05 77_[+3]_35 chr3L:10166604-10166724 3.5e-05 19_[+3]_93 chrX:6361372-6361492 3.5e-05 22_[+3]_90 chr2L:5353622-5353742 3.5e-05 77_[+3]_35 chr2R:21675014-21675134 3.5e-05 28_[+3]_84 chr3R:26332467-26332587 4.9e-05 78_[+3]_34 chr3L:15467151-15467271 4.9e-05 1_[+3]_111 chr3L:13031455-13031575 4.9e-05 65_[+3]_47 chr3R:11147579-11147699 4.9e-05 49_[+3]_63 chr3R:24065895-24066015 4.9e-05 91_[+3]_21 chr3R:6436746-6436866 4.9e-05 81_[+3]_31 chr2L:12636323-12636443 4.9e-05 10_[+3]_102 chr3R:15682237-15682357 4.9e-05 91_[+3]_21 chr3L:16566938-16567058 4.9e-05 47_[+3]_65 chr3R:24523780-24523900 7e-05 92_[+3]_20 chr2L:19565608-19565728 7e-05 35_[+3]_77 chr3R:20307028-20307148 7e-05 62_[+3]_50 chr3L:22795795-22795915 7e-05 62_[+3]_50 chr3L:20204008-20204128 7e-05 74_[+3]_38 chr3L:13223736-13223856 7e-05 44_[+3]_68 chr2L:3308653-3308773 7e-05 84_[+3]_28 chr3L:19142726-19142846 7e-05 21_[+3]_91 chrX:4542528-4542648 8.5e-05 24_[+3]_88 chr2L:19457995-19458115 8.5e-05 52_[+3]_60 chrX:14265283-14265403 8.5e-05 51_[+3]_61 chr2L:7409735-7409855 0.00011 30_[+3]_82 chrX:6050407-6050527 0.00011 55_[+3]_57 chrX:15493047-15493167 0.00011 104_[+3]_8 chr2R:21986946-21987066 0.00012 31_[+3]_81 chrX:9705416-9705536 0.00014 75_[+3]_37 chr3L:11471871-11471991 0.00014 99_[+3]_13 chr3R:11600556-11600676 0.00014 20_[+3]_92 chr2R:19779920-19780040 0.00017 41_[+3]_71 chrX:17763340-17763460 0.00017 88_[+3]_24 chrX:17548929-17549049 0.00017 36_[+3]_76 chr3L:11539622-11539742 0.00018 43_[+3]_69 chr3L:139659-139779 0.0002 85_[+3]_27 chr3L:20598773-20598893 0.00024 62_[+3]_50 chrX:2194717-2194837 0.00024 49_[+3]_63 chrX:18057668-18057788 0.00024 25_[+3]_87 chr2L:13278536-13278656 0.00024 68_[+3]_44 chr3R:6010133-6010253 0.00024 94_[+3]_18 chr2R:17310480-17310600 0.00024 58_[+3]_54 chr2R:10959425-10959545 0.00024 3_[+3]_109 chrX:8231380-8231500 0.00024 29_[+3]_83 chr2R:18878754-18878874 0.00024 66_[+3]_46 chr2L:1036944-1037064 0.00027 17_[+3]_95 chr3R:10390201-10390321 0.00027 82_[+3]_30 chr2L:7315688-7315808 0.00027 97_[+3]_15 chrX:22575221-22575341 0.00027 47_[+3]_65 chr3L:15357579-15357699 0.00035 40_[+3]_72 chrX:12467332-12467452 0.00038 46_[+3]_66 chr3L:3947442-3947562 0.00038 17_[+3]_95 chr2R:23222145-23222265 0.00038 40_[+3]_72 chr2R:13235885-13236005 0.0004 11_[+3]_101 chr3L:19468924-19469044 0.00041 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGTTG width=8 seqs=78 chr4:1064945-1065065 ( 64) CAGTGTTG 1 chr3L:22722091-22722211 ( 8) CAGTGTTG 1 chr3R:5246725-5246845 ( 68) CAGTGTTG 1 chr3R:29503869-29503989 ( 100) CAGTGTTG 1 chr3R:29203764-29203884 ( 29) CAGTGTTG 1 chr2L:16664589-16664709 ( 33) CAGTGTTG 1 chr2L:11211722-11211842 ( 51) CAGTGTTG 1 chr2R:12202925-12203045 ( 10) CAGTGTTG 1 chrX:19170912-19171032 ( 32) CAGTGTTG 1 chr3R:25420492-25420612 ( 63) CAGTGTTG 1 chrX:16648241-16648361 ( 22) CAGTGTTG 1 chr2R:24188216-24188336 ( 35) CAGTGTTG 1 chr3R:20000026-20000146 ( 68) CAGTGTTG 1 chr3L:2107635-2107755 ( 27) CAGTGTTG 1 chr2R:24892239-24892359 ( 87) CAGTGTTG 1 chrX:22981647-22981767 ( 96) CAGTGTTG 1 chr2L:16747284-16747404 ( 74) CAGTGTTG 1 chr3L:14803367-14803487 ( 83) CAGTGCTG 1 chr2L:15118161-15118281 ( 61) CAGTGCTG 1 chr3R:29206304-29206424 ( 53) CAGTGCTG 1 chr2L:10311124-10311244 ( 68) CAGTGCTG 1 chrX:4911199-4911319 ( 97) CAGTGCTG 1 chr3L:3466318-3466438 ( 78) CAGTGTGG 1 chr3L:10166604-10166724 ( 20) CAGTGTGG 1 chrX:6361372-6361492 ( 23) CAGTGTGG 1 chr2L:5353622-5353742 ( 78) CAGTGTGG 1 chr2R:21675014-21675134 ( 29) CAGTGTGG 1 chr3R:26332467-26332587 ( 79) CAGAGTTG 1 chr3L:15467151-15467271 ( 2) CAGAGTTG 1 chr3L:13031455-13031575 ( 66) CAGAGTTG 1 chr3R:11147579-11147699 ( 50) CAGAGTTG 1 chr3R:24065895-24066015 ( 92) CAGAGTTG 1 chr3R:6436746-6436866 ( 82) CAGAGTTG 1 chr2L:12636323-12636443 ( 11) CAGAGTTG 1 chr3R:15682237-15682357 ( 92) CAGAGTTG 1 chr3L:16566938-16567058 ( 48) CAGAGTTG 1 chr3R:24523780-24523900 ( 93) TAGTGTTG 1 chr2L:19565608-19565728 ( 36) TAGTGTTG 1 chr3R:20307028-20307148 ( 63) TAGTGTTG 1 chr3L:22795795-22795915 ( 63) TAGTGTTG 1 chr3L:20204008-20204128 ( 75) TAGTGTTG 1 chr3L:13223736-13223856 ( 45) TAGTGTTG 1 chr2L:3308653-3308773 ( 85) TAGTGTTG 1 chr3L:19142726-19142846 ( 22) TAGTGTTG 1 chrX:4542528-4542648 ( 25) GAGTGTTG 1 chr2L:19457995-19458115 ( 53) GAGTGTTG 1 chrX:14265283-14265403 ( 52) GAGTGTTG 1 chr2L:7409735-7409855 ( 31) CAGCGTTG 1 chrX:6050407-6050527 ( 56) CAGCGTTG 1 chrX:15493047-15493167 ( 105) CAGGGTTG 1 chr2R:21986946-21987066 ( 32) CAGAGCTG 1 chrX:9705416-9705536 ( 76) TAGTGCTG 1 chr3L:11471871-11471991 ( 100) TAGTGCTG 1 chr3R:11600556-11600676 ( 21) TAGTGCTG 1 chr2R:19779920-19780040 ( 42) AAGTGTTG 1 chrX:17763340-17763460 ( 89) AAGTGTTG 1 chrX:17548929-17549049 ( 37) AAGTGTTG 1 chr3L:11539622-11539742 ( 44) TAGTGTGG 1 chr3L:139659-139779 ( 86) TAGAGTTG 1 chr3L:20598773-20598893 ( 63) GAGTGTGG 1 chrX:2194717-2194837 ( 50) GAGTGTGG 1 chrX:18057668-18057788 ( 26) CAGTGTTA 1 chr2L:13278536-13278656 ( 69) CAGTGTTA 1 chr3R:6010133-6010253 ( 95) CAGTGTTA 1 chr2R:17310480-17310600 ( 59) GAGTGTGG 1 chr2R:10959425-10959545 ( 4) GAGTGTGG 1 chrX:8231380-8231500 ( 30) CAGTGTTA 1 chr2R:18878754-18878874 ( 67) GAGTGTGG 1 chr2L:1036944-1037064 ( 18) CAGCGCTG 1 chr3R:10390201-10390321 ( 83) CAGCGCTG 1 chr2L:7315688-7315808 ( 98) CAGGGCTG 1 chrX:22575221-22575341 ( 48) CAGGGCTG 1 chr3L:15357579-15357699 ( 41) TAGGGTTG 1 chrX:12467332-12467452 ( 47) TAGAGCTG 1 chr3L:3947442-3947562 ( 18) TAGAGCTG 1 chr2R:23222145-23222265 ( 41) AAGTGTGG 1 chr2R:13235885-13236005 ( 12) AAGAGTTG 1 chr3L:19468924-19469044 ( 46) TAGAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.95669 E= 2.5e-030 -218 159 -104 -43 179 -1293 -1293 -1293 -1293 -1293 224 -1293 -59 -200 -204 126 -1293 -1293 224 -1293 -1293 -9 -1293 146 -1293 -1293 -34 150 -250 -1293 216 -1293 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 2.5e-030 0.064103 0.615385 0.102564 0.217949 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.192308 0.051282 0.051282 0.705128 0.000000 0.000000 1.000000 0.000000 0.000000 0.192308 0.000000 0.807692 0.000000 0.000000 0.166667 0.833333 0.051282 0.000000 0.948718 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGTTG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]AGTGTTG -------------------------------------------------------------------------------- Time 19.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-4 width = 8 sites = 18 llr = 177 E-value = 1.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::8:a: pos.-specific C :11a2a:8 probability G a9::1::: matrix T ::9::::2 bits 2.3 * * * 2.1 * * * 1.8 ** * ** 1.6 ** * *** Relative 1.4 **** *** Entropy 1.1 **** *** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:898131-898251 63 9.57e-06 AGCTGCTGTT GGTCACAC TGCGAAAATG chrX:15107146-15107266 81 9.57e-06 AATAATGAAT GGTCACAC TCTCCGCCCA chr3R:10594550-10594670 89 9.57e-06 ATAATTGCAT GGTCACAC TATGCACTTG chr3L:1119941-1120061 78 9.57e-06 TCCTTAGCAA GGTCACAC TACTGAGCCA chr3R:22180175-22180295 45 9.57e-06 ATTCAGCTTT GGTCACAC AACCAGTTTT chr3L:8012519-8012639 51 9.57e-06 GCATTTGCAT GGTCACAC TGCATACTTT chrX:5922196-5922316 80 9.57e-06 CTGCGCTAAT GGTCACAC CAATTGGTCT chr3L:17245704-17245824 87 1.63e-05 CCATTTATCC GGTCCCAC TATTtctctc chr3L:8843180-8843300 81 1.63e-05 GCAACCATTT GGTCCCAC TTCCTTTTCC chr2R:18309078-18309198 62 1.63e-05 TCACTGGCCT GGTCCCAC TGATTTGCAT chr2L:19457995-19458115 22 2.30e-05 CGAGACAACT GGCCACAC GACCATTCGC chr3L:16889629-16889749 45 2.30e-05 GAAAACACTT GGCCACAC CAATCAAACG chr3L:8229121-8229241 43 4.60e-05 GCAACGAGAT GGTCACAT GACTTTTCCA chr3R:5061491-5061611 53 4.60e-05 ACTAAAATGC GGTCACAT TGTTTGCCAC chr2R:7940651-7940771 49 4.60e-05 GTTAAACCTA GCTCACAC TCCTTAAAAT chr2R:20583573-20583693 95 4.60e-05 CTGTCATCTC GCTCACAC CTAACGGATT chrX:9437263-9437383 42 4.60e-05 ATATGGCCTT GGTCACAT CACTTTTGCC chr3R:29816439-29816559 56 5.30e-05 GCACAGACAT GGTCGCAC TATTTTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:898131-898251 9.6e-06 62_[+4]_50 chrX:15107146-15107266 9.6e-06 80_[+4]_32 chr3R:10594550-10594670 9.6e-06 88_[+4]_24 chr3L:1119941-1120061 9.6e-06 77_[+4]_35 chr3R:22180175-22180295 9.6e-06 44_[+4]_68 chr3L:8012519-8012639 9.6e-06 50_[+4]_62 chrX:5922196-5922316 9.6e-06 79_[+4]_33 chr3L:17245704-17245824 1.6e-05 86_[+4]_26 chr3L:8843180-8843300 1.6e-05 80_[+4]_32 chr2R:18309078-18309198 1.6e-05 61_[+4]_51 chr2L:19457995-19458115 2.3e-05 21_[+4]_91 chr3L:16889629-16889749 2.3e-05 44_[+4]_68 chr3L:8229121-8229241 4.6e-05 42_[+4]_70 chr3R:5061491-5061611 4.6e-05 52_[+4]_60 chr2R:7940651-7940771 4.6e-05 48_[+4]_64 chr2R:20583573-20583693 4.6e-05 94_[+4]_18 chrX:9437263-9437383 4.6e-05 41_[+4]_71 chr3R:29816439-29816559 5.3e-05 55_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=18 chrX:898131-898251 ( 63) GGTCACAC 1 chrX:15107146-15107266 ( 81) GGTCACAC 1 chr3R:10594550-10594670 ( 89) GGTCACAC 1 chr3L:1119941-1120061 ( 78) GGTCACAC 1 chr3R:22180175-22180295 ( 45) GGTCACAC 1 chr3L:8012519-8012639 ( 51) GGTCACAC 1 chrX:5922196-5922316 ( 80) GGTCACAC 1 chr3L:17245704-17245824 ( 87) GGTCCCAC 1 chr3L:8843180-8843300 ( 81) GGTCCCAC 1 chr2R:18309078-18309198 ( 62) GGTCCCAC 1 chr2L:19457995-19458115 ( 22) GGCCACAC 1 chr3L:16889629-16889749 ( 45) GGCCACAC 1 chr3L:8229121-8229241 ( 43) GGTCACAT 1 chr3R:5061491-5061611 ( 53) GGTCACAT 1 chr2R:7940651-7940771 ( 49) GCTCACAC 1 chr2R:20583573-20583693 ( 95) GCTCACAC 1 chrX:9437263-9437383 ( 42) GGTCACAT 1 chr3R:29816439-29816559 ( 56) GGTCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 1.5e+001 -1081 -1081 224 -1081 -1081 -88 207 -1081 -1081 -88 -1081 160 -1081 229 -1081 -1081 142 -30 -193 -1081 -1081 229 -1081 -1081 179 -1081 -1081 -1081 -1081 202 -1081 -82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.5e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.777778 0.166667 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-4 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 25.30 secs. ******************************************************************************** ******************************************************************************** MOTIF WATCGATA MEME-5 width = 8 sites = 29 llr = 259 E-value = 7.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3a:::a:8 pos.-specific C 1::a:::: probability G 1:::a::: matrix T 6:a:::a2 bits 2.3 ** 2.1 ** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (12.9 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10385127-10385247 3 2.69e-05 CC TATCGATA TTAGATGCAT chr2L:14274700-14274820 91 2.69e-05 CAAGTATGTA TATCGATA CTGCAAAGTT chr2L:1036944-1037064 69 2.69e-05 GACCTATCGA TATCGATA GACTTAGGCG chr3L:23015857-23015977 82 2.69e-05 CTGGCTCTCT TATCGATA AGTCTAAGTT chr2L:12174914-12175034 42 2.69e-05 TGGGCTGCAT TATCGATA AAAGCCCGCA chrX:11993420-11993540 56 2.69e-05 tagatatcga tatcgata tagatatcga chr2L:22215239-22215359 40 2.69e-05 TATTTAGACC TATCGATA AGAGAGCCAG chr3L:16390906-16391026 82 2.69e-05 TGGCTTGGTC TATCGATA AATGGCGCCA chrX:4181346-4181466 61 2.69e-05 GCGCGCGATT TATCGATA ATCGGACGGA chr3R:18590897-18591017 39 2.69e-05 GGAGCAATCT TATCGATA CTGTCATCGA chrX:12821695-12821815 65 2.69e-05 CAGCATATGT TATCGATA ACTTCGATGT chrX:13090952-13091072 54 5.35e-05 ATATAGATAT AATCGATA CCTAACTTAA chr2R:10805255-10805375 46 5.35e-05 CTATCGAGTG AATCGATA TCGTCGGAAT chr2L:5361599-5361719 67 5.35e-05 gatcgaatcg aatcgata acgaaaaacg chr3L:14408819-14408939 62 5.35e-05 TATATGGGTC AATCGATA TACACCGACA chr2R:13039612-13039732 98 5.35e-05 CAGCTATCGA AATCGATA GCAAAAGCCA chrX:13366839-13366959 58 5.35e-05 gataaccgat aatcgata atcgagaatc chr2R:18705886-18706006 18 8.08e-05 CCTACTTCGA TATCGATT ACCGACAGTT chr3R:11600556-11600676 49 8.08e-05 GATGAATAAT TATCGATT AGCCGTGTGC chrX:17687212-17687332 4 8.08e-05 TGG TATCGATT ATGGCCTGTC chr3R:15481811-15481931 31 8.08e-05 AATCCCAATA TATCGATT GTTATAGAAA chrX:4177872-4177992 65 8.08e-05 ATGAATTATT TATCGATT GTCTGCCCAC chr3L:13031455-13031575 105 1.00e-04 CTATGTAATT GATCGATA AATGGTAA chr3R:4570475-4570595 104 1.00e-04 ATGGGAAGCA GATCGATA GAAGTGGTG chr2R:23222145-23222265 21 1.00e-04 AAGTCCATTC GATCGATA ACTAAAAGCG chr2R:21519105-21519225 6 1.19e-04 ACTGT CATCGATA GTAGGACGCG chr3R:15839438-15839558 86 1.19e-04 CCGGGGAGTT CATCGATA AATATGTAGT chrX:12467332-12467452 27 1.46e-04 CGAGCTTGAC AATCGATT TTTGTCATGG chrX:19170912-19171032 43 1.46e-04 AGTGTTGTAC AATCGATT GATGATTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10385127-10385247 2.7e-05 2_[+5]_110 chr2L:14274700-14274820 2.7e-05 90_[+5]_22 chr2L:1036944-1037064 2.7e-05 68_[+5]_44 chr3L:23015857-23015977 2.7e-05 81_[+5]_31 chr2L:12174914-12175034 2.7e-05 41_[+5]_71 chrX:11993420-11993540 2.7e-05 55_[+5]_57 chr2L:22215239-22215359 2.7e-05 39_[+5]_73 chr3L:16390906-16391026 2.7e-05 81_[+5]_31 chrX:4181346-4181466 2.7e-05 60_[+5]_52 chr3R:18590897-18591017 2.7e-05 38_[+5]_74 chrX:12821695-12821815 2.7e-05 64_[+5]_48 chrX:13090952-13091072 5.4e-05 53_[+5]_59 chr2R:10805255-10805375 5.4e-05 45_[+5]_67 chr2L:5361599-5361719 5.4e-05 66_[+5]_46 chr3L:14408819-14408939 5.4e-05 61_[+5]_51 chr2R:13039612-13039732 5.4e-05 97_[+5]_15 chrX:13366839-13366959 5.4e-05 57_[+5]_55 chr2R:18705886-18706006 8.1e-05 17_[+5]_95 chr3R:11600556-11600676 8.1e-05 48_[+5]_64 chrX:17687212-17687332 8.1e-05 3_[+5]_109 chr3R:15481811-15481931 8.1e-05 30_[+5]_82 chrX:4177872-4177992 8.1e-05 64_[+5]_48 chr3L:13031455-13031575 0.0001 104_[+5]_8 chr3R:4570475-4570595 0.0001 103_[+5]_9 chr2R:23222145-23222265 0.0001 20_[+5]_92 chr2R:21519105-21519225 0.00012 5_[+5]_107 chr3R:15839438-15839558 0.00012 85_[+5]_27 chrX:12467332-12467452 0.00015 26_[+5]_86 chrX:19170912-19171032 0.00015 42_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATCGATA width=8 seqs=29 chrX:10385127-10385247 ( 3) TATCGATA 1 chr2L:14274700-14274820 ( 91) TATCGATA 1 chr2L:1036944-1037064 ( 69) TATCGATA 1 chr3L:23015857-23015977 ( 82) TATCGATA 1 chr2L:12174914-12175034 ( 42) TATCGATA 1 chrX:11993420-11993540 ( 56) TATCGATA 1 chr2L:22215239-22215359 ( 40) TATCGATA 1 chr3L:16390906-16391026 ( 82) TATCGATA 1 chrX:4181346-4181466 ( 61) TATCGATA 1 chr3R:18590897-18591017 ( 39) TATCGATA 1 chrX:12821695-12821815 ( 65) TATCGATA 1 chrX:13090952-13091072 ( 54) AATCGATA 1 chr2R:10805255-10805375 ( 46) AATCGATA 1 chr2L:5361599-5361719 ( 67) AATCGATA 1 chr3L:14408819-14408939 ( 62) AATCGATA 1 chr2R:13039612-13039732 ( 98) AATCGATA 1 chrX:13366839-13366959 ( 58) AATCGATA 1 chr2R:18705886-18706006 ( 18) TATCGATT 1 chr3R:11600556-11600676 ( 49) TATCGATT 1 chrX:17687212-17687332 ( 4) TATCGATT 1 chr3R:15481811-15481931 ( 31) TATCGATT 1 chrX:4177872-4177992 ( 65) TATCGATT 1 chr3L:13031455-13031575 ( 105) GATCGATA 1 chr3R:4570475-4570595 ( 104) GATCGATA 1 chr2R:23222145-23222265 ( 21) GATCGATA 1 chr2R:21519105-21519225 ( 6) CATCGATA 1 chr3R:15839438-15839558 ( 86) CATCGATA 1 chrX:12467332-12467452 ( 27) AATCGATT 1 chrX:19170912-19171032 ( 43) AATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 7.5e+000 -7 -157 -103 91 179 -1150 -1150 -1150 -1150 -1150 -1150 177 -1150 229 -1150 -1150 -1150 -1150 224 -1150 179 -1150 -1150 -1150 -1150 -1150 -1150 177 139 -1150 -1150 -28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 7.5e+000 0.275862 0.068966 0.103448 0.551724 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.758621 0.000000 0.000000 0.241379 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-5 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AT] -------------------------------------------------------------------------------- Time 31.10 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4911199-4911319 1.81e-02 17_[+3(8.45e-05)]_71_[+3(2.44e-05)]_\ 16 chr2L:11429685-11429805 5.12e-01 120 chr3R:23961004-23961124 1.37e-02 47_[+2(8.19e-05)]_14_[+2(8.19e-05)]_\ 21_[+2(8.19e-05)]_14 chrX:8137424-8137544 2.94e-02 54_[+2(1.31e-05)]_23_[+2(1.31e-05)]_\ 27 chr3L:11539622-11539742 4.19e-03 7_[+1(1.00e-05)]_30_[+1(1.74e-05)]_\ 67 chr3R:12375379-12375499 5.02e-04 73_[+4(9.57e-06)]_39 chrX:14265283-14265403 5.15e-03 51_[+3(8.45e-05)]_39_[+2(8.19e-05)]_\ 14 chrX:4493653-4493773 4.03e-06 46_[+2(2.24e-05)]_12_[+1(1.00e-05)]_\ 46 chrX:17361250-17361370 1.78e-02 50_[+4(2.30e-05)]_62 chr2R:18309078-18309198 1.03e-02 61_[+4(1.63e-05)]_51 chrX:18993006-18993126 2.10e-02 53_[+1(2.45e-05)]_59 chr3L:15357579-15357699 1.30e-01 120 chrX:19844149-19844269 2.15e-02 15_[+1(1.00e-05)]_97 chr3L:10991761-10991881 1.15e-02 97_[+4(2.30e-05)]_15 chr3L:19142726-19142846 5.75e-04 21_[+3(6.97e-05)]_45_[+2(1.31e-05)]_\ 38 chr3R:19306578-19306698 1.36e-02 44_[+1(1.00e-05)]_33_[+1(2.45e-05)]_\ 27 chr2L:16747284-16747404 1.39e-02 73_[+3(1.44e-05)]_39 chr2L:5447380-5447500 5.02e-03 16_[+1(1.00e-05)]_2_[+1(1.00e-05)]_\ 86 chr3R:10591603-10591723 3.09e-02 37_[+1(1.00e-05)]_62_[+1(1.74e-05)]_\ 5 chrX:4177872-4177992 4.25e-03 64_[+5(8.08e-05)]_48 chr2R:18878754-18878874 2.54e-03 40_[+1(1.74e-05)]_20_[+1(8.37e-05)]_\ 44 chrX:22981647-22981767 1.42e-02 19_[+3(1.44e-05)]_68_[+3(1.44e-05)]_\ 17 chr2R:23222145-23222265 3.90e-04 42_[+1(1.74e-05)]_22_[+1(1.00e-05)]_\ 40 chr2R:21675014-21675134 9.35e-04 28_[+3(3.48e-05)]_30_[+1(1.00e-05)]_\ 46 chr2L:21905278-21905398 1.28e-03 43_[+2(2.24e-05)]_32_[+4(9.00e-05)]_\ 29 chrX:5922196-5922316 7.45e-04 49_[+4(9.57e-06)]_22_[+4(9.57e-06)]_\ 33 chrX:11659773-11659893 2.98e-02 24_[+1(1.00e-05)]_88 chrX:22575221-22575341 1.88e-01 120 chr2L:5353622-5353742 1.20e-02 45_[+1(4.86e-05)]_24_[+3(3.48e-05)]_\ 35 chrX:12821695-12821815 3.52e-02 64_[+5(2.69e-05)]_48 chr3L:8210735-8210855 5.56e-03 20_[+1(1.00e-05)]_92 chr2R:20349063-20349183 4.90e-01 120 chrX:17548929-17549049 2.41e-01 120 chr3R:4570475-4570595 3.77e-03 46_[+2(1.31e-05)]_66 chr2L:1909213-1909333 2.94e-02 53_[+2(1.31e-05)]_59 chrX:6361372-6361492 1.15e-03 24_[+1(1.74e-05)]_24_[+1(1.00e-05)]_\ 56 chr3L:8843180-8843300 5.80e-03 40_[+4(9.57e-06)]_32_[+4(1.63e-05)]_\ 32 chr3L:10686757-10686877 9.29e-02 77_[+2(8.19e-05)]_35 chr3R:18590897-18591017 3.11e-02 38_[+5(2.69e-05)]_74 chr2L:3308653-3308773 3.91e-03 21_[+1(7.31e-05)]_55_[+3(6.97e-05)]_\ 28 chr3R:25470523-25470643 7.08e-01 120 chr3L:8012519-8012639 7.53e-04 50_[+4(9.57e-06)]_23_[+2(5.44e-05)]_\ 31 chr3L:16566938-16567058 3.89e-02 30_[+3(4.90e-05)]_9_[+3(4.90e-05)]_\ 65 chrX:4181346-4181466 2.13e-02 60_[+5(2.69e-05)]_52 chr3R:22180175-22180295 6.64e-05 44_[+4(9.57e-06)]_11_[+1(1.00e-05)]_\ 49 chr3L:18154288-18154408 1.52e-02 120 chr3R:15682237-15682357 3.20e-03 91_[+3(4.90e-05)]_10_[+1(6.30e-05)]_\ 3 chr2R:23622062-23622182 3.70e-03 75_[+1(1.00e-05)]_37 chr2L:5370753-5370873 7.86e-03 70_[+1(1.00e-05)]_42 chr3R:20332827-20332947 4.20e-02 120 chr3R:19291522-19291642 4.13e-03 90_[+4(9.57e-06)]_22 chr2L:12636323-12636443 6.44e-02 10_[+3(4.90e-05)]_102 chr3R:4728576-4728696 7.52e-04 59_[+4(9.57e-06)]_53 chrX:3788558-3788678 2.39e-01 120 chr3L:13117627-13117747 4.81e-01 120 chr3L:13884599-13884719 4.75e-02 37_[+2(1.31e-05)]_75 chr3R:32011119-32011239 8.71e-01 120 chr3L:1119941-1120061 7.36e-03 38_[+4(9.57e-06)]_31_[+4(9.57e-06)]_\ 35 chr3L:2830797-2830917 8.79e-02 4_[+2(1.31e-05)]_108 chr3R:21013926-21014046 1.24e-04 31_[+2(2.24e-05)]_81 chr3L:13223736-13223856 1.59e-01 44_[+3(6.97e-05)]_68 chr2L:2920318-2920438 8.82e-02 120 chr3L:13299830-13299950 2.22e-02 16_[+1(1.00e-05)]_96 chr3R:6436746-6436866 7.97e-02 81_[+3(4.90e-05)]_31 chr2R:24892239-24892359 1.48e-01 86_[+3(1.44e-05)]_26 chr2L:18321081-18321201 9.91e-03 18_[+1(1.00e-05)]_30_[+1(1.00e-05)]_\ 56 chr3L:7915940-7916060 1.22e-02 94_[+2(1.31e-05)]_18 chrX:17468501-17468621 3.71e-05 44_[+4(9.57e-06)]_10_[+1(2.45e-05)]_\ 50 chrX:20638185-20638305 6.80e-03 66_[+4(9.57e-06)]_46 chr3L:16390906-16391026 6.39e-02 81_[+5(2.69e-05)]_31 chr2L:22215239-22215359 2.05e-02 39_[+5(2.69e-05)]_73 chr3L:20204008-20204128 1.20e-01 34_[+3(6.97e-05)]_32_[+3(6.97e-05)]_\ 38 chr2L:2954611-2954731 3.25e-01 120 chr3L:20743737-20743857 3.05e-04 21_[+1(1.00e-05)]_91 chr3R:30306644-30306764 3.03e-03 73_[+4(9.57e-06)]_39 chrX:8231380-8231500 1.79e-02 2_[+1(2.45e-05)]_21_[+1(4.86e-05)]_\ 81 chr3L:508048-508168 1.57e-01 51_[+2(8.19e-05)]_61 chr3L:17245704-17245824 6.96e-03 86_[+4(1.63e-05)]_26 chr3R:16295875-16295995 5.50e-02 68_[+2(1.31e-05)]_21_[+2(8.19e-05)]_\ 15 chrX:4139201-4139321 4.68e-01 120 chr3L:10166604-10166724 5.15e-04 21_[+1(1.74e-05)]_28_[+1(1.74e-05)]_\ 55 chrX:22499696-22499816 5.46e-04 58_[+4(9.57e-06)]_54 chrX:15493047-15493167 1.23e-01 120 chr3R:24065895-24066015 1.00e-02 91_[+3(4.90e-05)]_21 chr2L:7315688-7315808 4.15e-02 120 chr2L:16478865-16478985 6.14e-01 120 chr2R:7377951-7378071 9.59e-02 48_[+2(1.31e-05)]_64 chr3L:16889629-16889749 5.06e-02 44_[+4(2.30e-05)]_68 chr3R:11147579-11147699 2.79e-03 49_[+3(4.90e-05)]_27_[+3(6.97e-05)]_\ 28 chrX:10729335-10729455 1.84e-04 16_[+4(9.57e-06)]_96 chr2R:10959425-10959545 3.83e-03 5_[+1(1.74e-05)]_42_[+1(1.00e-05)]_\ 57 chr3R:12310164-12310284 1.17e-01 74_[+2(1.31e-05)]_38 chr3R:15839438-15839558 9.77e-03 66_[+2(8.19e-05)]_46 chr2L:7226714-7226834 4.27e-02 57_[+2(8.19e-05)]_19_[+2(8.19e-05)]_\ 28 chr2L:10311124-10311244 8.51e-02 38_[+3(2.44e-05)]_21_[+3(2.44e-05)]_\ 45 chr3R:29206304-29206424 1.08e-02 52_[+3(2.44e-05)]_60 chrX:12645515-12645635 8.13e-01 120 chrX:17940385-17940505 7.65e-02 120 chr2R:17310480-17310600 6.64e-03 95_[+1(1.74e-05)]_17 chr3L:14336975-14337095 7.90e-02 120 chr3L:2107635-2107755 1.03e-01 26_[+3(1.44e-05)]_86 chrX:4627296-4627416 1.02e-05 30_[+1(2.45e-05)]_31_[+2(2.24e-05)]_\ 43 chrX:1216806-1216926 5.70e-03 31_[+1(2.45e-05)]_19_[+1(1.74e-05)]_\ 54 chr3L:22094429-22094549 9.52e-02 40_[+2(1.31e-05)]_72 chrX:10929781-10929901 3.41e-04 109_[+2(2.24e-05)]_3 chrX:20231842-20231962 1.25e-03 72_[+1(3.46e-05)]_18_[+2(1.31e-05)]_\ 14 chrX:13366839-13366959 5.51e-02 57_[+5(5.35e-05)]_55 chr3R:11403045-11403165 6.36e-01 120 chr2L:21726-21846 1.39e-02 17_[+1(1.00e-05)]_95 chr3L:14219520-14219640 1.39e-02 32_[+2(1.31e-05)]_80 chr2R:6326708-6326828 4.95e-03 87_[+1(1.00e-05)]_25 chrX:11993420-11993540 5.14e-02 49_[+5(2.69e-05)]_63 chr3R:6010133-6010253 4.22e-02 120 chrX:17298354-17298474 3.53e-03 57_[+2(1.31e-05)]_55 chrX:8510788-8510908 1.18e-02 94_[+4(9.57e-06)]_18 chrX:8232982-8233102 3.97e-02 49_[+1(1.00e-05)]_63 chr2R:13039612-13039732 9.13e-03 97_[+5(5.35e-05)]_15 chrX:5839884-5840004 3.16e-04 69_[+4(9.57e-06)]_43 chr2L:1500470-1500590 6.05e-02 31_[+2(8.19e-05)]_10_[+2(1.31e-05)]_\ 63 chr2L:13278536-13278656 1.44e-03 22_[+1(1.74e-05)]_40_[+1(4.86e-05)]_\ 42 chr2L:15118161-15118281 4.09e-02 60_[+3(2.44e-05)]_52 chrX:18057668-18057788 5.88e-03 27_[+1(4.86e-05)]_23_[+1(1.00e-05)]_\ 54 chr3R:22072701-22072821 7.94e-01 120 chrX:6363297-6363417 2.96e-03 3_[+1(1.74e-05)]_109 chr3L:14803367-14803487 4.14e-02 82_[+3(2.44e-05)]_30 chr2L:17715971-17716091 4.60e-02 120 chr2R:21872338-21872458 3.78e-02 60_[+1(1.00e-05)]_52 chr3L:14397168-14397288 7.18e-01 120 chr3L:13031455-13031575 1.59e-02 65_[+3(4.90e-05)]_47 chr3R:20000026-20000146 7.51e-02 67_[+3(1.44e-05)]_45 chr2R:10679535-10679655 2.88e-06 50_[+2(2.24e-05)]_4_[+3(3.48e-05)]_\ 50 chr3L:8109027-8109147 3.39e-03 23_[+1(3.46e-05)]_89 chr3L:4069241-4069361 2.19e-01 120 chr2L:18821-18941 1.14e-02 97_[+1(1.00e-05)]_15 chrX:13833710-13833830 6.93e-01 120 chr3L:3466318-3466438 1.24e-03 77_[+3(3.48e-05)]_35 chr3L:139659-139779 9.91e-02 120 chrX:11797076-11797196 5.75e-04 63_[+1(7.31e-05)]_49 chr3R:15660624-15660744 8.66e-02 120 chr2R:24188216-24188336 2.47e-02 34_[+3(1.44e-05)]_78 chr3L:2893955-2894075 8.80e-01 120 chr3R:5570750-5570870 1.55e-01 120 chr2R:10798737-10798857 4.44e-04 17_[+3(1.44e-05)]_95 chrX:16648241-16648361 1.43e-02 21_[+3(1.44e-05)]_91 chr2R:16240707-16240827 2.27e-01 120 chr2L:13711709-13711829 7.49e-03 7_[+1(1.74e-05)]_105 chrX:6050407-6050527 1.15e-04 45_[+4(9.57e-06)]_67 chrX:17244995-17245115 2.38e-02 73_[+1(2.45e-05)]_39 chrX:9635102-9635222 2.24e-01 51_[+2(8.19e-05)]_40_[+2(8.19e-05)]_\ 13 chr3L:3947442-3947562 5.67e-02 120 chrX:7163650-7163770 1.08e-02 120 chr3R:16481112-16481232 1.43e-01 120 chr3R:25420492-25420612 5.03e-02 8_[+3(1.44e-05)]_46_[+3(1.44e-05)]_\ 50 chrX:19170912-19171032 9.32e-03 31_[+3(1.44e-05)]_81 chrX:9437263-9437383 1.71e-03 41_[+4(4.60e-05)]_15_[+4(9.57e-06)]_\ 48 chr3L:3801841-3801961 1.11e-02 62_[+1(1.00e-05)]_50 chr3R:22799428-22799548 2.63e-01 120 chr3L:14408819-14408939 2.18e-02 61_[+5(5.35e-05)]_51 chr2L:6130651-6130771 5.37e-01 120 chr2R:12202925-12203045 5.22e-04 9_[+3(1.44e-05)]_66_[+2(1.31e-05)]_\ 29 chrX:2194717-2194837 4.41e-03 13_[+1(1.00e-05)]_30_[+1(1.74e-05)]_\ 61 chr2L:11211722-11211842 6.62e-02 50_[+3(1.44e-05)]_62 chr3R:4833729-4833849 1.35e-02 74_[+2(8.19e-05)]_38 chrX:8554405-8554525 2.95e-01 120 chrX:9639305-9639425 4.12e-01 120 chr3L:22634289-22634409 8.56e-01 120 chr2L:16664589-16664709 1.72e-02 32_[+3(1.44e-05)]_80 chr4:721888-722008 3.25e-01 48_[+2(8.19e-05)]_64 chr2L:12575236-12575356 5.14e-04 26_[+1(1.00e-05)]_34_[+1(6.30e-05)]_\ 13_[+2(8.19e-05)]_23 chr2R:21986946-21987066 3.07e-01 120 chr3R:10390201-10390321 6.26e-03 37_[+1(1.74e-05)]_30_[+1(1.74e-05)]_\ 37 chrX:284352-284472 5.76e-02 73_[+2(1.31e-05)]_39 chr3R:29816439-29816559 5.18e-05 11_[+3(3.48e-05)]_36_[+4(5.30e-05)]_\ 57 chrX:21080503-21080623 2.76e-02 49_[+1(1.00e-05)]_63 chr3R:10594550-10594670 3.77e-03 60_[+2(2.24e-05)]_20_[+4(9.57e-06)]_\ 24 chrX:8116938-8117058 1.40e-03 89_[+4(9.57e-06)]_23 chrX:6048918-6049038 5.94e-03 77_[+4(9.57e-06)]_35 chr2L:12174914-12175034 3.52e-03 41_[+5(2.69e-05)]_71 chr3L:19468924-19469044 2.72e-03 9_[+1(1.00e-05)]_103 chr3R:15481811-15481931 8.35e-03 30_[+5(8.08e-05)]_82 chr3R:29203764-29203884 2.64e-02 28_[+3(1.44e-05)]_84 chr3L:23015857-23015977 9.07e-03 81_[+5(2.69e-05)]_31 chr2L:5361599-5361719 9.72e-02 66_[+5(5.35e-05)]_46 chrX:17687212-17687332 2.09e-01 3_[+5(8.08e-05)]_109 chr3R:29503869-29503989 4.58e-02 99_[+3(1.44e-05)]_13 chr3R:6706473-6706593 7.59e-01 120 chr3R:5246725-5246845 1.06e-01 67_[+3(1.44e-05)]_45 chr3L:15467151-15467271 3.91e-03 1_[+3(4.90e-05)]_73_[+3(4.90e-05)]_\ 30 chrX:340480-340600 3.50e-01 120 chr3L:4322217-4322337 1.54e-01 120 chr3R:10121429-10121549 2.62e-02 7_[+1(2.45e-05)]_105 chr2R:6200775-6200895 9.01e-02 58_[+2(1.31e-05)]_54 chr2R:10805255-10805375 2.39e-02 45_[+5(5.35e-05)]_67 chrX:17691969-17692089 2.09e-05 55_[+4(9.57e-06)]_10_[+1(1.00e-05)]_\ 39 chr2L:1036944-1037064 1.52e-03 62_[+5(2.69e-05)]_50 chr2R:9237897-9238017 6.06e-01 120 chrX:6521007-6521127 6.00e-02 58_[+1(1.00e-05)]_54 chrX:17763340-17763460 5.23e-02 120 chrX:13090952-13091072 3.31e-01 53_[+5(5.35e-05)]_59 chrX:15091313-15091433 1.97e-01 120 chr2L:19457995-19458115 2.83e-03 21_[+4(2.30e-05)]_23_[+3(8.45e-05)]_\ 60 chr2L:14274700-14274820 2.22e-02 90_[+5(2.69e-05)]_22 chr3L:22722091-22722211 2.55e-02 7_[+3(1.44e-05)]_105 chr3R:7851033-7851153 6.16e-02 109_[+2(1.31e-05)]_3 chr2R:13235885-13236005 1.16e-02 88_[+2(8.19e-05)]_24 chr4:1064945-1065065 2.43e-02 63_[+3(1.44e-05)]_49 chr3R:6009829-6009949 4.40e-01 120 chr3L:3581762-3581882 2.31e-01 120 chr2L:1419775-1419895 1.10e-01 120 chr2L:13182572-13182692 1.25e-02 81_[+2(1.31e-05)]_31 chr2L:7409735-7409855 7.77e-03 59_[+1(1.00e-05)]_53 chr3L:14245891-14246011 2.62e-02 63_[+1(1.00e-05)]_49 chr3L:22795795-22795915 8.45e-02 62_[+3(6.97e-05)]_50 chr3L:20598773-20598893 6.78e-03 27_[+1(1.00e-05)]_85 chr3R:11600556-11600676 1.34e-02 14_[+5(2.69e-05)]_26_[+5(8.08e-05)]_\ 64 chr2R:20583573-20583693 9.44e-02 94_[+4(4.60e-05)]_18 chr3R:12679023-12679143 6.84e-01 120 chr2R:21519105-21519225 2.10e-01 120 chr2L:14972997-14973117 4.50e-01 120 chr3L:8005651-8005771 2.26e-03 75_[+4(9.57e-06)]_37 chr2R:24213912-24214032 1.17e-02 36_[+1(1.00e-05)]_76 chr2R:7940651-7940771 3.02e-02 48_[+4(4.60e-05)]_64 chrX:14933181-14933301 1.02e-01 104_[+2(1.31e-05)]_8 chr2L:1574056-1574176 8.80e-01 120 chrX:7620292-7620412 4.09e-01 120 chr2R:9446827-9446947 2.16e-01 120 chr3L:11471871-11471991 1.51e-01 120 chr2R:19779920-19780040 2.92e-01 120 chrX:4542528-4542648 2.04e-02 24_[+3(8.45e-05)]_50_[+2(8.19e-05)]_\ 30 chrX:19701727-19701847 3.70e-03 9_[+1(1.00e-05)]_103 chr3L:19483125-19483245 1.39e-01 120 chr3R:26332467-26332587 1.74e-02 78_[+3(4.90e-05)]_34 chrX:15107146-15107266 1.53e-03 80_[+4(9.57e-06)]_20_[+4(9.57e-06)]_\ 4 chr3L:7238470-7238590 5.67e-02 120 chrX:12467332-12467452 5.20e-02 120 chr2R:18705886-18706006 1.11e-01 17_[+5(8.08e-05)]_95 chrX:10002588-10002708 3.42e-01 120 chr3R:20307028-20307148 1.82e-03 38_[+2(1.31e-05)]_16_[+3(6.97e-05)]_\ 50 chr3R:30306852-30306972 8.81e-01 120 chr3R:4527544-4527664 5.30e-02 120 chr2L:19565608-19565728 6.61e-02 35_[+3(6.97e-05)]_77 chr3R:24523780-24523900 9.82e-02 92_[+3(6.97e-05)]_20 chr3R:20154792-20154912 6.43e-01 120 chr3R:5061491-5061611 1.56e-04 21_[+1(2.45e-05)]_2_[+1(6.30e-05)]_\ 13_[+4(4.60e-05)]_60 chr2L:20494412-20494532 7.00e-01 120 chr3L:8229121-8229241 1.74e-01 42_[+4(4.60e-05)]_70 chrX:10385127-10385247 1.08e-01 2_[+5(2.69e-05)]_110 chrX:9705416-9705536 9.66e-02 120 chrX:898131-898251 8.37e-04 62_[+4(9.57e-06)]_21_[+4(9.57e-06)]_\ 21 chr2L:16787711-16787831 8.76e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************