******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ss.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:8896329-8896449 1.0000 120 chr3R:16334443-16334563 1.0000 120 chrX:7980918-7981038 1.0000 120 chr2L:16590472-16590592 1.0000 120 chrX:13116579-13116699 1.0000 120 chrX:9077714-9077834 1.0000 120 chr3L:22420949-22421069 1.0000 120 chrX:9344293-9344413 1.0000 120 chr2L:12524335-12524455 1.0000 120 chr3L:12615174-12615294 1.0000 120 chr3R:13524778-13524898 1.0000 120 chr3R:24004105-24004225 1.0000 120 chr2L:20812644-20812764 1.0000 120 chr3L:14059724-14059844 1.0000 120 chr3L:14486773-14486893 1.0000 120 chr3R:16340747-16340867 1.0000 120 chr3R:24935889-24936009 1.0000 120 chrX:7194794-7194914 1.0000 120 chrX:7100837-7100957 1.0000 120 chr3R:21938708-21938828 1.0000 120 chrX:3413070-3413190 1.0000 120 chrX:10021932-10022052 1.0000 120 chrX:17522702-17522822 1.0000 120 chrX:11785140-11785260 1.0000 120 chrX:4108122-4108242 1.0000 120 chr3L:682583-682703 1.0000 120 chr3L:16854369-16854489 1.0000 120 chrX:9651215-9651335 1.0000 120 chr3R:5622173-5622293 1.0000 120 chrX:19485194-19485314 1.0000 120 chr3R:9381092-9381212 1.0000 120 chr2R:22078795-22078915 1.0000 120 chrX:17806457-17806577 1.0000 120 chr2R:7370396-7370516 1.0000 120 chr2R:11214029-11214149 1.0000 120 chrX:8159125-8159245 1.0000 120 chrX:18866421-18866541 1.0000 120 chrX:9987783-9987903 1.0000 120 chr2R:9714248-9714368 1.0000 120 chrX:15080066-15080186 1.0000 120 chr2L:2802689-2802809 1.0000 120 chr3L:9462936-9463056 1.0000 120 chr2R:15664672-15664792 1.0000 120 chr2R:18760669-18760789 1.0000 120 chr2L:9945218-9945338 1.0000 120 chrX:7067343-7067463 1.0000 120 chrX:3382911-3383031 1.0000 120 chr2R:17439604-17439724 1.0000 120 chr3R:19317438-19317558 1.0000 120 chr2R:17682169-17682289 1.0000 120 chrX:4462104-4462224 1.0000 120 chr2L:7189849-7189969 1.0000 120 chr3R:26004520-26004640 1.0000 120 chrX:15620557-15620677 1.0000 120 chr3L:8822085-8822205 1.0000 120 chr3R:11859260-11859380 1.0000 120 chr2R:12457550-12457670 1.0000 120 chrX:7973432-7973552 1.0000 120 chr3R:16423521-16423641 1.0000 120 chr2R:15284711-15284831 1.0000 120 chr2R:19617275-19617395 1.0000 120 chr2R:24980664-24980784 1.0000 120 chr3L:10534061-10534181 1.0000 120 chr2R:20580829-20580949 1.0000 120 chr3R:13215264-13215384 1.0000 120 chrX:8518101-8518221 1.0000 120 chr3L:11442461-11442581 1.0000 120 chr3L:18889376-18889496 1.0000 120 chr3R:30285102-30285222 1.0000 120 chr2R:7472432-7472552 1.0000 120 chrX:12675377-12675497 1.0000 120 chr3L:41828-41948 1.0000 120 chr2R:14027186-14027306 1.0000 120 chr3R:24287317-24287437 1.0000 120 chr3R:23319035-23319155 1.0000 120 chr2R:17266144-17266264 1.0000 120 chrX:9989307-9989427 1.0000 120 chr3R:27084841-27084961 1.0000 120 chr2R:15533200-15533320 1.0000 120 chrX:16906169-16906289 1.0000 120 chr3L:8360424-8360544 1.0000 120 chrX:8592772-8592892 1.0000 120 chr3R:9933419-9933539 1.0000 120 chrX:13644775-13644895 1.0000 120 chr2L:3351948-3352068 1.0000 120 chr3R:30289443-30289563 1.0000 120 chr2L:2806343-2806463 1.0000 120 chr2R:18567357-18567477 1.0000 120 chr3L:2873202-2873322 1.0000 120 chr3R:10592970-10593090 1.0000 120 chr3R:30014039-30014159 1.0000 120 chrX:17149757-17149877 1.0000 120 chrX:16765058-16765178 1.0000 120 chr3R:10539787-10539907 1.0000 120 chr3R:10177027-10177147 1.0000 120 chr2R:14336205-14336325 1.0000 120 chrX:19359277-19359397 1.0000 120 chr2R:23637970-23638090 1.0000 120 chr3R:30005469-30005589 1.0000 120 chr2R:18879261-18879381 1.0000 120 chrX:15079288-15079408 1.0000 120 chr2L:20486909-20487029 1.0000 120 chr3R:20547903-20548023 1.0000 120 chr2R:8952678-8952798 1.0000 120 chr2L:7175921-7176041 1.0000 120 chr2R:18432744-18432864 1.0000 120 chr3L:18080116-18080236 1.0000 120 chrX:9134337-9134457 1.0000 120 chr3R:11865261-11865381 1.0000 120 chr3L:14145708-14145828 1.0000 120 chr3R:14722688-14722808 1.0000 120 chrX:17488541-17488661 1.0000 120 chr2L:18457086-18457206 1.0000 120 chr3R:31503835-31503955 1.0000 120 chrX:20166795-20166915 1.0000 120 chr3R:12717040-12717160 1.0000 120 chr2R:6148128-6148248 1.0000 120 chr2L:168443-168563 1.0000 120 chrX:4941660-4941780 1.0000 120 chr3L:4178289-4178409 1.0000 120 chrX:9466884-9467004 1.0000 120 chrX:5769004-5769124 1.0000 120 chr3L:5943662-5943782 1.0000 120 chr2L:18943417-18943537 1.0000 120 chr3L:3782983-3783103 1.0000 120 chrX:20468413-20468533 1.0000 120 chrX:9139248-9139368 1.0000 120 chr3L:2874170-2874290 1.0000 120 chrX:4435056-4435176 1.0000 120 chr3R:21634815-21634935 1.0000 120 chrX:18544934-18545054 1.0000 120 chrX:3720355-3720475 1.0000 120 chr3R:25493929-25494049 1.0000 120 chr3L:10757056-10757176 1.0000 120 chr3R:25459309-25459429 1.0000 120 chr3R:20556852-20556972 1.0000 120 chr2L:5494185-5494305 1.0000 120 chr2R:16131891-16132011 1.0000 120 chr2L:7334223-7334343 1.0000 120 chr2L:7207783-7207903 1.0000 120 chr3L:22401669-22401789 1.0000 120 chr3R:19070689-19070809 1.0000 120 chr2R:21543352-21543472 1.0000 120 chr3L:9551280-9551400 1.0000 120 chr2R:22586961-22587081 1.0000 120 chr2R:21386738-21386858 1.0000 120 chr3R:8705618-8705738 1.0000 120 chr2R:22399520-22399640 1.0000 120 chr2L:135840-135960 1.0000 120 chr2L:5751567-5751687 1.0000 120 chrX:7290953-7291073 1.0000 120 chr3L:19833375-19833495 1.0000 120 chr3R:23993535-23993655 1.0000 120 chrX:13111884-13112004 1.0000 120 chr3L:20387908-20388028 1.0000 120 chr2R:19157697-19157817 1.0000 120 chr3L:18791232-18791352 1.0000 120 chr2L:7466422-7466542 1.0000 120 chr2L:16255652-16255772 1.0000 120 chrX:12890500-12890620 1.0000 120 chr2L:524545-524665 1.0000 120 chr3R:14421939-14422059 1.0000 120 chr2R:8595930-8596050 1.0000 120 chr3L:12099609-12099729 1.0000 120 chrX:13948901-13949021 1.0000 120 chr3L:10365029-10365149 1.0000 120 chrX:5051184-5051304 1.0000 120 chr2R:14987113-14987233 1.0000 120 chr3L:3338195-3338315 1.0000 120 chr3R:24549895-24550015 1.0000 120 chr2R:15800064-15800184 1.0000 120 chr2R:24957379-24957499 1.0000 120 chr3L:11368505-11368625 1.0000 120 chrX:5988268-5988388 1.0000 120 chr3R:9389113-9389233 1.0000 120 chr3R:27925797-27925917 1.0000 120 chr3R:21944033-21944153 1.0000 120 chr2R:10057975-10058095 1.0000 120 chr3R:31682540-31682660 1.0000 120 chrX:13747740-13747860 1.0000 120 chr2L:10794163-10794283 1.0000 120 chrX:9466636-9466756 1.0000 120 chr2R:8143577-8143697 1.0000 120 chr2R:22596919-22597039 1.0000 120 chr2L:20916940-20917060 1.0000 120 chr3R:10177235-10177355 1.0000 120 chrX:8062161-8062281 1.0000 120 chr2R:11180822-11180942 1.0000 120 chr2R:25115657-25115777 1.0000 120 chr2R:9814188-9814308 1.0000 120 chr3L:8028094-8028214 1.0000 120 chr3L:5141506-5141626 1.0000 120 chr2R:15906100-15906220 1.0000 120 chr3R:15112375-15112495 1.0000 120 chr3L:7134975-7135095 1.0000 120 chrX:7097565-7097685 1.0000 120 chr2L:12527761-12527881 1.0000 120 chr3R:5112043-5112163 1.0000 120 chr2L:6100344-6100464 1.0000 120 chr3L:12040470-12040590 1.0000 120 chrX:7540906-7541026 1.0000 120 chrX:19165419-19165539 1.0000 120 chrX:21055193-21055313 1.0000 120 chr3R:24039307-24039427 1.0000 120 chr3L:19091549-19091669 1.0000 120 chr3L:5551192-5551312 1.0000 120 chr3R:13816408-13816528 1.0000 120 chr2L:19156112-19156232 1.0000 120 chr2L:13893653-13893773 1.0000 120 chr3R:29506707-29506827 1.0000 120 chr2L:8420407-8420527 1.0000 120 chrX:12672838-12672958 1.0000 120 chr3R:8349958-8350078 1.0000 120 chr3R:24117065-24117185 1.0000 120 chr2R:16159865-16159985 1.0000 120 chr3L:8775505-8775625 1.0000 120 chr3L:3326650-3326770 1.0000 120 chr3R:16281434-16281554 1.0000 120 chr3L:21934500-21934620 1.0000 120 chr2R:17136257-17136377 1.0000 120 chr3R:21823214-21823334 1.0000 120 chr2L:13545884-13546004 1.0000 120 chr3R:11646989-11647109 1.0000 120 chr3L:18819741-18819861 1.0000 120 chr3L:2835893-2836013 1.0000 120 chrX:13879545-13879665 1.0000 120 chr2L:1617856-1617976 1.0000 120 chr2R:11595177-11595297 1.0000 120 chr3R:23763895-23764015 1.0000 120 chr3R:29570389-29570509 1.0000 120 chr3L:17500737-17500857 1.0000 120 chr3L:20317125-20317245 1.0000 120 chr3L:539954-540074 1.0000 120 chr3R:23728248-23728368 1.0000 120 chr2R:21389303-21389423 1.0000 120 chr3L:2818006-2818126 1.0000 120 chrX:17542900-17543020 1.0000 120 chr3R:21592073-21592193 1.0000 120 chr3L:13497846-13497966 1.0000 120 chrX:11570006-11570126 1.0000 120 chr3L:16002500-16002620 1.0000 120 chr3L:16173949-16174069 1.0000 120 chr3L:6155246-6155366 1.0000 120 chrX:18273329-18273449 1.0000 120 chr3R:15091797-15091917 1.0000 120 chrX:335018-335138 1.0000 120 chr3L:540154-540274 1.0000 120 chrX:21127391-21127511 1.0000 120 chrX:15552559-15552679 1.0000 120 chrX:8061958-8062078 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ss/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ss.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.298 C 0.204 G 0.206 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.298 C 0.204 G 0.206 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 91 llr = 755 E-value = 1.6e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :::::::: probability G :::12::: matrix T aa997aaa bits 2.3 2.1 1.8 ** * 1.6 ** *** Relative 1.4 **** *** Entropy 1.1 **** *** (12.0 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:335018-335138 4 5.14e-05 ATG TTTTTTTT TTATTTTTTA chr3R:15091797-15091917 44 5.14e-05 ttttttatac tttttttt ttattttatt chr3L:6155246-6155366 51 5.14e-05 GGTTTCGttt tttttttt taattgtttt chrX:11570006-11570126 29 5.14e-05 TGTGTGCGGT TTTTTTTT GTTCCACCTT chr3R:23728248-23728368 41 5.14e-05 tatttttttt tttttttt cttatttGCC chr3L:539954-540074 34 5.14e-05 TGCAAACAGT TTTTTTTT CTCTCTTGCT chr2R:11595177-11595297 54 5.14e-05 TCTTCCTCGT TTTTTTTT TCTTATGGAG chr3L:18819741-18819861 73 5.14e-05 GTATTTTACA TTTTTTTT AGCCGTGGGA chr3L:8775505-8775625 98 5.14e-05 TTTGTTGTTC TTTTTTTT CTCAATTCAT chr2L:19156112-19156232 36 5.14e-05 GGCTGGCAGT TTTTTTTT CTTTTTGCGC chrX:19165419-19165539 58 5.14e-05 CTGTTGCTTC TTTTTTTT GCAGACTTTG chr3L:7134975-7135095 102 5.14e-05 CTGTTGATTT TTTTTTTT TGGATTTTGT chr3L:8028094-8028214 101 5.14e-05 TCTCAACCGT TTTTTTTT TCTCCGTTCA chr3R:31682540-31682660 106 5.14e-05 TCGAATGTCT TTTTTTTT AAGCCTG chrX:12890500-12890620 105 5.14e-05 GTAGGAACTT TTTTTTTT GTAATAAA chr3L:18791232-18791352 59 5.14e-05 GCTCGCTGTT TTTTTTTT TTGCAGTTGG chrX:7290953-7291073 55 5.14e-05 cctttttcct tttttttt cctttgtgtt chr2L:5751567-5751687 99 5.14e-05 TAAGTGATCT TTTTTTTT ATACCTAGAC chr3L:9551280-9551400 98 5.14e-05 TTTGTTGTAT TTTTTTTT TTGTAGTTGC chr2R:21543352-21543472 82 5.14e-05 tgtttttgtg tttttttt ttttttGAAA chr3R:21634815-21634935 106 5.14e-05 CTATGCTTGA TTTTTTTT CAACCAT chr3L:5943662-5943782 79 5.14e-05 tttcttcatt tttttttt cttttttttt chrX:5769004-5769124 31 5.14e-05 ttcatttcgg ttTTTTTT ATGGATGCGT chr3R:12717040-12717160 2 5.14e-05 T TTTTTTTT ACACTGTCTG chr3R:14722688-14722808 113 5.14e-05 atttttcttt tttttttt chr3R:11865261-11865381 53 5.14e-05 TGTTTACACT TTTTTTTT TGCGCAGACA chr3L:18080116-18080236 104 5.14e-05 TTTATTTTCA TTTTTTTT TCGCTTTTT chr3R:30005469-30005589 66 5.14e-05 tctttttcat tttttttt tCGTTGCATT chr3R:10592970-10593090 23 5.14e-05 TTTGCATCTT TTTTTTTT GCATTTTTAC chr3R:30289443-30289563 101 5.14e-05 GTTGTCTCGT TTTTTTTT TACTTGCACT chrX:16906169-16906289 55 5.14e-05 GAGAGttttt tttttttt tttgtttttt chr2R:14027186-14027306 65 5.14e-05 CAACGTACTT TTTTTTTT GCTGCGCTTC chrX:8518101-8518221 35 5.14e-05 AAGCTCTGTG tttttttt atttttccta chr2R:20580829-20580949 110 5.14e-05 taatatctta tttttttt tgt chr3L:10534061-10534181 68 5.14e-05 GTTTTTCTTC TTTTTTTT TTGTATATTT chrX:7973432-7973552 41 5.14e-05 TTTATTGGTT TTTTTTTT ACTTTTTGCT chrX:4462104-4462224 102 5.14e-05 TTAGGCATAT tttttttt tttttttttt chr2R:17682169-17682289 55 5.14e-05 TGTGTATATA TTTTTTTT AATGAATAAT chrX:18866421-18866541 103 5.14e-05 GGGTATTGTT TTTTTTTT TTGTTTCGGG chr3R:9381092-9381212 61 5.14e-05 CTTTAGTTTA TTTTTTTT TTGTATATTT chrX:10021932-10022052 34 5.14e-05 TTTTCATGTT TTTTTTTT CACGAGTTTC chrX:3413070-3413190 69 5.14e-05 ttggctctta tttttttt tatttttatt chr3R:21938708-21938828 50 5.14e-05 TTTTAATTCT TTTTTTTT CGAACTTTTT chr2L:20812644-20812764 76 5.14e-05 tatttattta tttttttT GTAATAACAA chr3R:24004105-24004225 40 5.14e-05 ttttttaggt tttttttt tGTGCTACGG chr3L:12615174-12615294 49 5.14e-05 CCTGCGAttc tttttttt tttttttttg chr3L:22420949-22421069 50 5.14e-05 cctttttttg tttttttt cttttttGTC chrX:13116579-13116699 55 5.14e-05 tttttttctg tttttttt ctgttttttt chrX:7980918-7981038 51 5.14e-05 CCCCTGAGTA tttttttt atatttattt chrX:13879545-13879665 91 8.78e-05 ATGCGTTGAT ttttgttt ttgttttgct chr2R:17136257-17136377 56 8.78e-05 TTTGTTTACG TTTTGTTT TCATGGGAGA chr2R:16159865-16159985 103 8.78e-05 AGCCTGGCAA TTTTGTTT CTTATTGGAT chr2R:9814188-9814308 44 8.78e-05 tgctctctga ttttgttt tcgtCGATGT chr2R:10057975-10058095 12 8.78e-05 TGATTTTTGT TTTTGTTT CATCTGACCG chrX:5051184-5051304 84 8.78e-05 aagaaCTTCA TTTTGTTT GGTTTTGCAG chr2L:16255652-16255772 57 8.78e-05 CTTTTCTTTC TTTTGTTT GTATTGCCGT chr3R:8705618-8705738 49 8.78e-05 TACGTTTTTA TTTTGTTT TCCTTGCTTC chrX:9134337-9134457 67 8.78e-05 aattgattga ttttgttt gtttattTTC chr2R:14336205-14336325 97 8.78e-05 GTAATTCATT TTTTGTTT TTCGTTCCAT chrX:19485194-19485314 15 8.78e-05 TGCTCGGCGC TTTTGTTT TGGTTTTGgt chrX:7194794-7194914 30 8.78e-05 GCGTCCAGTT TTTTGTTT TCTTTGATTC chrX:15552559-15552679 100 1.40e-04 CCTTTCACAT TTTTATTT CTAGTTTATT chrX:21127391-21127511 10 1.40e-04 ctatgcata ttttattt atttttaaat chr3L:540154-540274 4 1.40e-04 AAA TTTTATTT TACTTTTCGT chr3L:17500737-17500857 90 1.40e-04 CTCATTTATC TTTTATTT TTATAAAATT chr2R:25115657-25115777 70 1.40e-04 CTTACATGAT TTTTATtt cctttttcag chr2R:22586961-22587081 49 1.40e-04 CTTTATATTT TTTTATTT TTCGCATGGG chr3R:27084841-27084961 83 1.40e-04 AACCTTTTCC TTTTATTT CAGTGTAGTT chrX:15620557-15620677 77 1.40e-04 CAATGACTat ttttattt ttggttttag chr2R:7370396-7370516 29 1.40e-04 GCAGGTGTGT TTTTATTT TACCTTTTTC chrX:11785140-11785260 4 1.40e-04 TGT TTTTATTT TTCTACTCCA chr3L:14059724-14059844 2 1.40e-04 c ttttattt acttatttat chr2L:7466422-7466542 71 1.77e-04 CTCGTTTTGG TTTGTTTT GGCTTTTTGG chrX:20468413-20468533 86 1.77e-04 CGCCCATTTA TTTGTTTT GAAGCCTCCT chr2L:168443-168563 54 1.77e-04 TTGTTCGCTC TTTGTTTT GCAAATTCTG chr3R:21592073-21592193 100 2.13e-04 AGACACAATA TTGTTTTT CCTTCATCTG chr2L:20916940-20917060 99 2.13e-04 tcctccttcg ttgttttt ATGCACTCGT chr2R:15800064-15800184 106 2.13e-04 ATTTTGTTGG TTGTTTTT AATACGT chr2L:18943417-18943537 86 2.13e-04 GAAAAGCTTG TTGTTTTT GCTGTTGCTG chr3R:20547903-20548023 43 2.49e-04 TCATTTTATA TTTTTCTT GTTCAATTTT chr3R:10539787-10539907 12 2.49e-04 TTGGTATTAA TTTTTCTT GTTGTTCCTT chr3R:9933419-9933539 3 2.49e-04 tt tttttctt gttgttatta chr2L:8420407-8420527 38 3.38e-04 GGCGCTCTGG TTCTTTTT TCGTTGCTGC chr3R:30014039-30014159 40 3.38e-04 GACCTTTCTC TTCTTTTT GCCCGGGGTA chr3L:2873202-2873322 91 3.38e-04 TATCTTTTCC TTTATTTT TATTATTTTC chr3R:16334443-16334563 80 3.38e-04 TGTTGTTGGC TTTATTTT GCACATATTT chrX:7097565-7097685 36 3.74e-04 AAATGCTTGG TTTTTTTG TAATTGTACT chr3L:19833375-19833495 108 3.74e-04 GGTTTATTGA TTTTTTTG TCCGT chr3R:16340747-16340867 65 4.00e-04 TGTGGTAATA TTTGGTTT ACCTGTCGCG chrX:7067343-7067463 8 4.63e-04 TTCGTCA TTTGATTT TGTAAACCAC chrX:12675377-12675497 105 5.89e-04 TTTTTTTCCT TTTAGTTT TTTGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:335018-335138 5.1e-05 3_[+1]_109 chr3R:15091797-15091917 5.1e-05 43_[+1]_69 chr3L:6155246-6155366 5.1e-05 50_[+1]_62 chrX:11570006-11570126 5.1e-05 28_[+1]_84 chr3R:23728248-23728368 5.1e-05 40_[+1]_72 chr3L:539954-540074 5.1e-05 33_[+1]_79 chr2R:11595177-11595297 5.1e-05 53_[+1]_59 chr3L:18819741-18819861 5.1e-05 72_[+1]_40 chr3L:8775505-8775625 5.1e-05 97_[+1]_15 chr2L:19156112-19156232 5.1e-05 35_[+1]_77 chrX:19165419-19165539 5.1e-05 57_[+1]_55 chr3L:7134975-7135095 5.1e-05 101_[+1]_11 chr3L:8028094-8028214 5.1e-05 100_[+1]_12 chr3R:31682540-31682660 5.1e-05 105_[+1]_7 chrX:12890500-12890620 5.1e-05 104_[+1]_8 chr3L:18791232-18791352 5.1e-05 58_[+1]_54 chrX:7290953-7291073 5.1e-05 54_[+1]_58 chr2L:5751567-5751687 5.1e-05 98_[+1]_14 chr3L:9551280-9551400 5.1e-05 97_[+1]_15 chr2R:21543352-21543472 5.1e-05 81_[+1]_31 chr3R:21634815-21634935 5.1e-05 105_[+1]_7 chr3L:5943662-5943782 5.1e-05 78_[+1]_34 chrX:5769004-5769124 5.1e-05 30_[+1]_82 chr3R:12717040-12717160 5.1e-05 1_[+1]_111 chr3R:14722688-14722808 5.1e-05 112_[+1] chr3R:11865261-11865381 5.1e-05 52_[+1]_60 chr3L:18080116-18080236 5.1e-05 103_[+1]_9 chr3R:30005469-30005589 5.1e-05 65_[+1]_47 chr3R:10592970-10593090 5.1e-05 22_[+1]_90 chr3R:30289443-30289563 5.1e-05 100_[+1]_12 chrX:16906169-16906289 5.1e-05 54_[+1]_58 chr2R:14027186-14027306 5.1e-05 64_[+1]_48 chrX:8518101-8518221 5.1e-05 34_[+1]_78 chr2R:20580829-20580949 5.1e-05 109_[+1]_3 chr3L:10534061-10534181 5.1e-05 67_[+1]_45 chrX:7973432-7973552 5.1e-05 40_[+1]_72 chrX:4462104-4462224 5.1e-05 101_[+1]_11 chr2R:17682169-17682289 5.1e-05 54_[+1]_58 chrX:18866421-18866541 5.1e-05 102_[+1]_10 chr3R:9381092-9381212 5.1e-05 60_[+1]_52 chrX:10021932-10022052 5.1e-05 33_[+1]_79 chrX:3413070-3413190 5.1e-05 68_[+1]_44 chr3R:21938708-21938828 5.1e-05 49_[+1]_63 chr2L:20812644-20812764 5.1e-05 75_[+1]_37 chr3R:24004105-24004225 5.1e-05 39_[+1]_73 chr3L:12615174-12615294 5.1e-05 48_[+1]_64 chr3L:22420949-22421069 5.1e-05 49_[+1]_63 chrX:13116579-13116699 5.1e-05 54_[+1]_58 chrX:7980918-7981038 5.1e-05 50_[+1]_62 chrX:13879545-13879665 8.8e-05 90_[+1]_22 chr2R:17136257-17136377 8.8e-05 55_[+1]_57 chr2R:16159865-16159985 8.8e-05 102_[+1]_10 chr2R:9814188-9814308 8.8e-05 43_[+1]_69 chr2R:10057975-10058095 8.8e-05 11_[+1]_101 chrX:5051184-5051304 8.8e-05 83_[+1]_29 chr2L:16255652-16255772 8.8e-05 56_[+1]_56 chr3R:8705618-8705738 8.8e-05 48_[+1]_64 chrX:9134337-9134457 8.8e-05 66_[+1]_46 chr2R:14336205-14336325 8.8e-05 96_[+1]_16 chrX:19485194-19485314 8.8e-05 14_[+1]_98 chrX:7194794-7194914 8.8e-05 29_[+1]_83 chrX:15552559-15552679 0.00014 99_[+1]_13 chrX:21127391-21127511 0.00014 9_[+1]_103 chr3L:540154-540274 0.00014 3_[+1]_109 chr3L:17500737-17500857 0.00014 89_[+1]_23 chr2R:25115657-25115777 0.00014 69_[+1]_43 chr2R:22586961-22587081 0.00014 48_[+1]_64 chr3R:27084841-27084961 0.00014 82_[+1]_30 chrX:15620557-15620677 0.00014 76_[+1]_36 chr2R:7370396-7370516 0.00014 28_[+1]_84 chrX:11785140-11785260 0.00014 3_[+1]_109 chr3L:14059724-14059844 0.00014 1_[+1]_111 chr2L:7466422-7466542 0.00018 70_[+1]_42 chrX:20468413-20468533 0.00018 85_[+1]_27 chr2L:168443-168563 0.00018 53_[+1]_59 chr3R:21592073-21592193 0.00021 99_[+1]_13 chr2L:20916940-20917060 0.00021 98_[+1]_14 chr2R:15800064-15800184 0.00021 105_[+1]_7 chr2L:18943417-18943537 0.00021 85_[+1]_27 chr3R:20547903-20548023 0.00025 42_[+1]_70 chr3R:10539787-10539907 0.00025 11_[+1]_101 chr3R:9933419-9933539 0.00025 2_[+1]_110 chr2L:8420407-8420527 0.00034 37_[+1]_75 chr3R:30014039-30014159 0.00034 39_[+1]_73 chr3L:2873202-2873322 0.00034 90_[+1]_22 chr3R:16334443-16334563 0.00034 79_[+1]_33 chrX:7097565-7097685 0.00037 35_[+1]_77 chr3L:19833375-19833495 0.00037 107_[+1]_5 chr3R:16340747-16340867 0.0004 64_[+1]_48 chrX:7067343-7067463 0.00046 7_[+1]_105 chrX:12675377-12675497 0.00059 104_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=91 chrX:335018-335138 ( 4) TTTTTTTT 1 chr3R:15091797-15091917 ( 44) TTTTTTTT 1 chr3L:6155246-6155366 ( 51) TTTTTTTT 1 chrX:11570006-11570126 ( 29) TTTTTTTT 1 chr3R:23728248-23728368 ( 41) TTTTTTTT 1 chr3L:539954-540074 ( 34) TTTTTTTT 1 chr2R:11595177-11595297 ( 54) TTTTTTTT 1 chr3L:18819741-18819861 ( 73) TTTTTTTT 1 chr3L:8775505-8775625 ( 98) TTTTTTTT 1 chr2L:19156112-19156232 ( 36) TTTTTTTT 1 chrX:19165419-19165539 ( 58) TTTTTTTT 1 chr3L:7134975-7135095 ( 102) TTTTTTTT 1 chr3L:8028094-8028214 ( 101) TTTTTTTT 1 chr3R:31682540-31682660 ( 106) TTTTTTTT 1 chrX:12890500-12890620 ( 105) TTTTTTTT 1 chr3L:18791232-18791352 ( 59) TTTTTTTT 1 chrX:7290953-7291073 ( 55) TTTTTTTT 1 chr2L:5751567-5751687 ( 99) TTTTTTTT 1 chr3L:9551280-9551400 ( 98) TTTTTTTT 1 chr2R:21543352-21543472 ( 82) TTTTTTTT 1 chr3R:21634815-21634935 ( 106) TTTTTTTT 1 chr3L:5943662-5943782 ( 79) TTTTTTTT 1 chrX:5769004-5769124 ( 31) TTTTTTTT 1 chr3R:12717040-12717160 ( 2) TTTTTTTT 1 chr3R:14722688-14722808 ( 113) TTTTTTTT 1 chr3R:11865261-11865381 ( 53) TTTTTTTT 1 chr3L:18080116-18080236 ( 104) TTTTTTTT 1 chr3R:30005469-30005589 ( 66) TTTTTTTT 1 chr3R:10592970-10593090 ( 23) TTTTTTTT 1 chr3R:30289443-30289563 ( 101) TTTTTTTT 1 chrX:16906169-16906289 ( 55) TTTTTTTT 1 chr2R:14027186-14027306 ( 65) TTTTTTTT 1 chrX:8518101-8518221 ( 35) TTTTTTTT 1 chr2R:20580829-20580949 ( 110) TTTTTTTT 1 chr3L:10534061-10534181 ( 68) TTTTTTTT 1 chrX:7973432-7973552 ( 41) TTTTTTTT 1 chrX:4462104-4462224 ( 102) TTTTTTTT 1 chr2R:17682169-17682289 ( 55) TTTTTTTT 1 chrX:18866421-18866541 ( 103) TTTTTTTT 1 chr3R:9381092-9381212 ( 61) TTTTTTTT 1 chrX:10021932-10022052 ( 34) TTTTTTTT 1 chrX:3413070-3413190 ( 69) TTTTTTTT 1 chr3R:21938708-21938828 ( 50) TTTTTTTT 1 chr2L:20812644-20812764 ( 76) TTTTTTTT 1 chr3R:24004105-24004225 ( 40) TTTTTTTT 1 chr3L:12615174-12615294 ( 49) TTTTTTTT 1 chr3L:22420949-22421069 ( 50) TTTTTTTT 1 chrX:13116579-13116699 ( 55) TTTTTTTT 1 chrX:7980918-7981038 ( 51) TTTTTTTT 1 chrX:13879545-13879665 ( 91) TTTTGTTT 1 chr2R:17136257-17136377 ( 56) TTTTGTTT 1 chr2R:16159865-16159985 ( 103) TTTTGTTT 1 chr2R:9814188-9814308 ( 44) TTTTGTTT 1 chr2R:10057975-10058095 ( 12) TTTTGTTT 1 chrX:5051184-5051304 ( 84) TTTTGTTT 1 chr2L:16255652-16255772 ( 57) TTTTGTTT 1 chr3R:8705618-8705738 ( 49) TTTTGTTT 1 chrX:9134337-9134457 ( 67) TTTTGTTT 1 chr2R:14336205-14336325 ( 97) TTTTGTTT 1 chrX:19485194-19485314 ( 15) TTTTGTTT 1 chrX:7194794-7194914 ( 30) TTTTGTTT 1 chrX:15552559-15552679 ( 100) TTTTATTT 1 chrX:21127391-21127511 ( 10) TTTTATTT 1 chr3L:540154-540274 ( 4) TTTTATTT 1 chr3L:17500737-17500857 ( 90) TTTTATTT 1 chr2R:25115657-25115777 ( 70) TTTTATTT 1 chr2R:22586961-22587081 ( 49) TTTTATTT 1 chr3R:27084841-27084961 ( 83) TTTTATTT 1 chrX:15620557-15620677 ( 77) TTTTATTT 1 chr2R:7370396-7370516 ( 29) TTTTATTT 1 chrX:11785140-11785260 ( 4) TTTTATTT 1 chr3L:14059724-14059844 ( 2) TTTTATTT 1 chr2L:7466422-7466542 ( 71) TTTGTTTT 1 chrX:20468413-20468533 ( 86) TTTGTTTT 1 chr2L:168443-168563 ( 54) TTTGTTTT 1 chr3R:21592073-21592193 ( 100) TTGTTTTT 1 chr2L:20916940-20917060 ( 99) TTGTTTTT 1 chr2R:15800064-15800184 ( 106) TTGTTTTT 1 chr2L:18943417-18943537 ( 86) TTGTTTTT 1 chr3R:20547903-20548023 ( 43) TTTTTCTT 1 chr3R:10539787-10539907 ( 12) TTTTTCTT 1 chr3R:9933419-9933539 ( 3) TTTTTCTT 1 chr2L:8420407-8420527 ( 38) TTCTTTTT 1 chr3R:30014039-30014159 ( 40) TTCTTTTT 1 chr3L:2873202-2873322 ( 91) TTTATTTT 1 chr3R:16334443-16334563 ( 80) TTTATTTT 1 chrX:7097565-7097685 ( 36) TTTTTTTG 1 chr3L:19833375-19833495 ( 108) TTTTTTTG 1 chr3R:16340747-16340867 ( 65) TTTGGTTT 1 chrX:7067343-7067463 ( 8) TTTGATTT 1 chrX:12675377-12675497 ( 105) TTTAGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 1.6e-050 -1315 -1315 -1315 178 -1315 -1315 -1315 178 -1315 -321 -223 168 -318 -1315 -191 165 -118 -1315 -42 130 -1315 -263 -1315 173 -1315 -1315 -1315 178 -1315 -1315 -323 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 1.6e-050 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.021978 0.043956 0.934066 0.032967 0.000000 0.054945 0.912088 0.131868 0.000000 0.153846 0.714286 0.000000 0.032967 0.000000 0.967033 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.021978 0.978022 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 113 llr = 857 E-value = 4.7e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aa7a87aa pos.-specific C ::2::1:: probability G ::::12:: matrix T ::1:1::: bits 2.3 2.1 1.8 ** * * 1.6 ** * ** Relative 1.4 ** * ** Entropy 1.1 ** * ** (10.9 bits) 0.9 ** ** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16173949-16174069 52 6.22e-05 gtaaactcga aaaaaaaa aCGGACTGCA chrX:17542900-17543020 8 6.22e-05 GGGCAAA AAAAAAAA ACAGATGACT chr3R:11646989-11647109 77 6.22e-05 gaaacgaaag aaaaaaaa acacaaaatc chr3R:8349958-8350078 96 6.22e-05 ATAAAGTGAA AAAAAAAA CACAAACGCA chrX:12672838-12672958 88 6.22e-05 aaaaaaagag aaaaaaaa aCCAACAACA chr3L:5551192-5551312 38 6.22e-05 CACTCGACAC AAAAAAAA GACTAAAAAT chr3L:7134975-7135095 5 6.22e-05 CCAT AAAAAAAA Tacaacacca chr3R:15112375-15112495 49 6.22e-05 Gacaaaaaaa aaaaaaaa aaaaaaaaaa chr2R:15906100-15906220 90 6.22e-05 caaaagctgc aaaaaaaa aTCTGCAAAT chrX:8062161-8062281 95 6.22e-05 TTGTTGAGCT AAAAAAAA TAATGAATCC chr2L:10794163-10794283 44 6.22e-05 acaaaaaaca aaaaaaaa agcaagacaa chr3R:24549895-24550015 63 6.22e-05 aaataaaaat aaaaaaaa caataaaaCC chr3L:10365029-10365149 68 6.22e-05 aaaaaaatga aaaaaaaa atctgaaaaa chr3L:12099609-12099729 105 6.22e-05 CAGAAGTCGT AAAAAAAA TACAGCAT chr3R:14421939-14422059 76 6.22e-05 CTTTAACCTA AAAAAAAA ATatttattt chr2R:19157697-19157817 64 6.22e-05 aaaaaagaaa aaaaaaaa gaaCGGAGCT chr3L:9551280-9551400 2 6.22e-05 a aaaaaaaa aaataaaaaa chrX:3720355-3720475 102 6.22e-05 Gaaacaacgg aaaaaaaa ggcaacgcaa chrX:18544934-18545054 79 6.22e-05 aaaaaaacaa aaaaaaaa aaatgataca chrX:4435056-4435176 92 6.22e-05 ATACAACAAA AAAAAAAA GGGAATACCA chr3L:2874170-2874290 111 6.22e-05 TGCAGCGAGG AAAAAAAA AC chr3L:3782983-3783103 3 6.22e-05 AA AAAAAAAA ATAATAAACC chrX:4941660-4941780 65 6.22e-05 gttaaaaaaa aaaaaaaa atgatgaaaa chrX:17488541-17488661 3 6.22e-05 cg aaaaaaaa taaatgaaca chr2L:20486909-20487029 5 6.22e-05 CATT AAAAAAAA CAAAAAAAAT chr2R:18879261-18879381 54 6.22e-05 AAAAACGCGC AAAAAAAA GTTATAAGAA chrX:19359277-19359397 60 6.22e-05 aaaaataaaa aaaaaaaa CTGAGGGGAA chr3R:10539787-10539907 91 6.22e-05 TGCaaaaaaa aaaaaaaa aaaaaaCACC chrX:8592772-8592892 75 6.22e-05 CGCGAAGCAT AAAAAAAA AGTCGCCAGC chr2R:15533200-15533320 66 6.22e-05 CGTGTGAACC AAAAAAAA ATAACGAGCC chr2R:17266144-17266264 88 6.22e-05 TTAAAAACAA AAAAAAAA GAGATCGTTG chr3R:23319035-23319155 91 6.22e-05 GAAAAAATAA AAAAAAAA TGGGGGGGGG chrX:12675377-12675497 16 6.22e-05 agaaaaaaag aaaaaaaa aatatatata chr3L:11442461-11442581 113 6.22e-05 aaaaacaaaa aaaaaaaa chr2R:19617275-19617395 113 6.22e-05 AAACACGTTT aaaaaaaa chr3R:26004520-26004640 34 6.22e-05 AAGCCTGAAC AAAAAAAA ACTAAAAAAG chrX:3382911-3383031 95 6.22e-05 ACGTTGGCaa aaaaaaaa gaagaaaaaa chrX:7067343-7067463 113 6.22e-05 CTGAATTACC AAAAAAAA chr2R:15664672-15664792 19 6.22e-05 GCaaaaatac aaaaaaaa aaatacaaca chrX:17806457-17806577 105 6.22e-05 acgaaagcgc aaaaaaaa atacaaca chr3L:682583-682703 84 6.22e-05 GCGCACTTCG AAAAAAAA ACAATTAGCG chrX:11785140-11785260 44 6.22e-05 tagtaaaaaa aaaaaaaa aatgaaaaaa chrX:17522702-17522822 45 6.22e-05 acaagatgca aaaaaaaa aaaaaaatta chr3L:14486773-14486893 20 6.22e-05 caaaacatca aaaaaaaa aaaagaaaaa chr3R:13524778-13524898 74 6.22e-05 ATCGCAGCAA AAAAAAAA CAAAAAAAAA chrX:9344293-9344413 39 6.22e-05 taaaagacaa aaaaaaaa aaaTATATAT chrX:9077714-9077834 66 6.22e-05 TGTGGTCCAA AAAAAAAA ACAAAAAACC chr2L:8420407-8420527 109 1.05e-04 CTGAGCCATg aaaaagaa gaag chr3R:13816408-13816528 74 1.05e-04 TGAGAAATGA AAAAAGAA AAGGCAAGAA chrX:7097565-7097685 4 1.05e-04 TGA AAAAAGAA AAGAAAAACT chr2R:10057975-10058095 60 1.05e-04 TTCCTGCAGA AAAAAGAA AAAGAGCGCG chr3R:21944033-21944153 70 1.05e-04 AAGCAAAAGG AAAAAGAA ACATTTAAAA chr3L:11368505-11368625 100 1.05e-04 GAAAATAAAT AAAAAGAA TTAAATCCAA chr2R:14987113-14987233 81 1.05e-04 CAAAAAAGGA AAAAAGAA ACCCAAAAGC chrX:5051184-5051304 42 1.05e-04 aaagaaacgg aaaaagaa aaagaaaaga chr3R:8705618-8705738 91 1.05e-04 TAAGTGGGCA AAAAAGAA GAGCGCAAAA chr2R:22586961-22587081 93 1.05e-04 CAACAAAATA AAAAAGAA ATAAACAGCG chr3R:30285102-30285222 53 1.05e-04 AAAAAATTGC AAAAAGAA GAGTGGAAAC chr3L:8822085-8822205 85 1.05e-04 CGAGCCAGAC AAAAAGAA GTCCAGGAGG chr2L:13545884-13546004 23 1.48e-04 caacagcagc aacaaaaa acaaccaaca chr2R:16159865-16159985 12 1.48e-04 ATTTTTGAAC AACAAAAA CAACAAAAAA chr2R:11180822-11180942 56 1.48e-04 ataaaacaaa aacaaaaa ccaagaaaaC chrX:13948901-13949021 57 1.48e-04 AGAAGTCGAG AACAAAAA GAGGCGCGAG chr3R:20556852-20556972 87 1.48e-04 GGAGGAAAAT AACAAAAA CCAAATGGGG chrX:9466884-9467004 57 1.48e-04 taaagagaat aacaaaaa tcaaaaAGCG chr2L:18457086-18457206 18 1.48e-04 GCGAATGAAG AACAAAAA CAACAAGCAG chr3R:13215264-13215384 106 1.48e-04 ATGATTTTTA AACAAAAA ATTCATA chr3R:11859260-11859380 100 1.48e-04 gcagaatgcg aacaaaaa cagaaataga chr2R:7370396-7370516 70 1.48e-04 AAGCTCTGCG AACAAAAA CACGCAGAAC chr3L:16854369-16854489 56 1.48e-04 Taaaaaagga aacaaaaa aataacaaga chr2L:16590472-16590592 12 1.48e-04 CCCAAAACAC AACAAAAA TAAGTACGAG chr3L:16002500-16002620 57 1.90e-04 CATCACTGTA AAAAACAA CACACACAAC chr2L:6100344-6100464 71 1.90e-04 CACAACTGTA AAAAACAA CTGCCGAAGT chr3L:8360424-8360544 54 1.90e-04 GTGCAAAGAA AAAAACAA AACAGCGGCA chrX:9989307-9989427 76 1.90e-04 AACAAATACA AAAAACAA ACAGCAGGAG chrX:13879545-13879665 38 2.63e-04 GTCCGTGTAG AAAAGAAA GCAAAAAGTA chr2L:5751567-5751687 14 2.63e-04 TAGTGTGCAA AACAAGAA ATTAAGCAAT chr3R:16423521-16423641 55 2.63e-04 CAACAGAAAC AACAAGAA TAAACCAAAA chrX:15080066-15080186 7 2.63e-04 AGAAGG AACAAGAA TGCCGGGCAC chr3R:10177235-10177355 14 3.23e-04 GTTTGCTTTC AATAAAAA GCTTATGCTT chr3R:9389113-9389233 88 3.23e-04 CAATGAAGAA AATAAAAA CCAATGACGA chr2L:16255652-16255772 15 3.23e-04 ATCACGGATA AATAAAAA GAGAGAATGA chr2L:7334223-7334343 31 3.23e-04 TAAAAACCAA AATAAAAA GTGCGGACAA chr3L:10757056-10757176 75 3.23e-04 atatatatta aataaaaa actaaGCTTA chr3L:41828-41948 7 3.23e-04 AGTTCA AATAAAAA TCCGCATCCA chrX:9987783-9987903 60 3.23e-04 TGTCTAATAT AATAAAAA CTGGCAGAGG chrX:7290953-7291073 7 3.53e-04 aacaac aacaacaa ATGACCCAAT chrX:15620557-15620677 27 3.53e-04 cgacaacaac aacaacaa caaTGAGGAC chr2L:12524335-12524455 75 3.53e-04 CGaaacaaac aacaacaa acaaaacaat chr3L:2835893-2836013 40 4.13e-04 gcaaaaaggc aaaataaa atggcaagag chrX:9466636-9466756 87 4.13e-04 AGGCAAGATG Aaaataaa taaatgaaag chrX:13747740-13747860 21 4.13e-04 aaaatatata aaaataaa tcaaaaataa chr3L:12615174-12615294 110 4.13e-04 GGAACCATTA AAAATAAA CTG chrX:21055193-21055313 69 4.43e-04 GGAAAGGAAG AAAAGGAA AACAAAAGCA chr2R:15800064-15800184 37 4.43e-04 ACTTCCTCGG AAAAGGAA GCTCCATTCA chr3R:31503835-31503955 77 4.43e-04 TATCCATTCA AAAAGGAA GTATATTAGA chrX:16765058-16765178 28 4.43e-04 AAAGTCCTAA AAAAGGAA CTTTAATTCT chr2L:18943417-18943537 62 4.73e-04 TTGGAAAGAA AACAGAAA AAGACCGAAA chrX:8061958-8062078 16 5.14e-04 GGCAAATCAA AATAAGAA AAGTGCCGCC chr3R:29570389-29570509 61 5.86e-04 TCATTTGCAT AAAACAAA GTCATTGCTT chr2R:11595177-11595297 92 5.86e-04 TATTGACTCA AAAAGCAA TACCCCTGCC chr3L:12040470-12040590 90 5.86e-04 AAGTGGAAGC AAAAGCAA CGAACTGGAC chr2R:14336205-14336325 48 5.86e-04 AAAAAAGCGT AAAACAAA AGCTACCTAC chrX:13644775-13644895 77 5.86e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chrX:17149757-17149877 44 6.28e-04 CAAAGTCCAC AATAACAA CTGATTGCTT chr2L:20812644-20812764 86 6.28e-04 tttttttTGT AATAACAA ATTGACAATG chr2L:168443-168563 86 6.70e-04 CACCGAGAGG AAAATGAA GCTAAACTTG chr3R:16340747-16340867 46 6.70e-04 TAAATATTGA AAAATGAA CTGTGGTAAT chr3R:16281434-16281554 99 7.12e-04 GTACACCGGC AACATAAA CTGGTTTTTC chrX:7540906-7541026 1 8.16e-04 . aatagaaa ttgcaaatAC chr3R:9933419-9933539 47 8.94e-04 AATGATTAAC AACAGCAA CCGCCGCCGG chrX:335018-335138 47 9.95e-04 ATTTACGGTT AAAAAACA TGCAGAATAT chr3R:10177027-10177147 55 9.95e-04 TGCTTGTTTC AAAACCAA TCGCTTACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16173949-16174069 6.2e-05 51_[+2]_61 chrX:17542900-17543020 6.2e-05 7_[+2]_105 chr3R:11646989-11647109 6.2e-05 76_[+2]_36 chr3R:8349958-8350078 6.2e-05 95_[+2]_17 chrX:12672838-12672958 6.2e-05 87_[+2]_25 chr3L:5551192-5551312 6.2e-05 37_[+2]_75 chr3L:7134975-7135095 6.2e-05 4_[+2]_108 chr3R:15112375-15112495 6.2e-05 48_[+2]_64 chr2R:15906100-15906220 6.2e-05 89_[+2]_23 chrX:8062161-8062281 6.2e-05 94_[+2]_18 chr2L:10794163-10794283 6.2e-05 43_[+2]_69 chr3R:24549895-24550015 6.2e-05 62_[+2]_50 chr3L:10365029-10365149 6.2e-05 67_[+2]_45 chr3L:12099609-12099729 6.2e-05 104_[+2]_8 chr3R:14421939-14422059 6.2e-05 75_[+2]_37 chr2R:19157697-19157817 6.2e-05 63_[+2]_49 chr3L:9551280-9551400 6.2e-05 1_[+2]_111 chrX:3720355-3720475 6.2e-05 101_[+2]_11 chrX:18544934-18545054 6.2e-05 78_[+2]_34 chrX:4435056-4435176 6.2e-05 91_[+2]_21 chr3L:2874170-2874290 6.2e-05 110_[+2]_2 chr3L:3782983-3783103 6.2e-05 2_[+2]_110 chrX:4941660-4941780 6.2e-05 64_[+2]_48 chrX:17488541-17488661 6.2e-05 2_[+2]_110 chr2L:20486909-20487029 6.2e-05 4_[+2]_108 chr2R:18879261-18879381 6.2e-05 53_[+2]_59 chrX:19359277-19359397 6.2e-05 59_[+2]_53 chr3R:10539787-10539907 6.2e-05 90_[+2]_22 chrX:8592772-8592892 6.2e-05 74_[+2]_38 chr2R:15533200-15533320 6.2e-05 65_[+2]_47 chr2R:17266144-17266264 6.2e-05 87_[+2]_25 chr3R:23319035-23319155 6.2e-05 90_[+2]_22 chrX:12675377-12675497 6.2e-05 15_[+2]_97 chr3L:11442461-11442581 6.2e-05 112_[+2] chr2R:19617275-19617395 6.2e-05 112_[+2] chr3R:26004520-26004640 6.2e-05 33_[+2]_79 chrX:3382911-3383031 6.2e-05 94_[+2]_18 chrX:7067343-7067463 6.2e-05 112_[+2] chr2R:15664672-15664792 6.2e-05 18_[+2]_94 chrX:17806457-17806577 6.2e-05 104_[+2]_8 chr3L:682583-682703 6.2e-05 83_[+2]_29 chrX:11785140-11785260 6.2e-05 43_[+2]_69 chrX:17522702-17522822 6.2e-05 44_[+2]_68 chr3L:14486773-14486893 6.2e-05 19_[+2]_93 chr3R:13524778-13524898 6.2e-05 73_[+2]_39 chrX:9344293-9344413 6.2e-05 38_[+2]_74 chrX:9077714-9077834 6.2e-05 65_[+2]_47 chr2L:8420407-8420527 0.00011 108_[+2]_4 chr3R:13816408-13816528 0.00011 73_[+2]_39 chrX:7097565-7097685 0.00011 3_[+2]_109 chr2R:10057975-10058095 0.00011 59_[+2]_53 chr3R:21944033-21944153 0.00011 69_[+2]_43 chr3L:11368505-11368625 0.00011 99_[+2]_13 chr2R:14987113-14987233 0.00011 80_[+2]_32 chrX:5051184-5051304 0.00011 41_[+2]_71 chr3R:8705618-8705738 0.00011 90_[+2]_22 chr2R:22586961-22587081 0.00011 92_[+2]_20 chr3R:30285102-30285222 0.00011 52_[+2]_60 chr3L:8822085-8822205 0.00011 84_[+2]_28 chr2L:13545884-13546004 0.00015 22_[+2]_90 chr2R:16159865-16159985 0.00015 11_[+2]_101 chr2R:11180822-11180942 0.00015 55_[+2]_57 chrX:13948901-13949021 0.00015 56_[+2]_56 chr3R:20556852-20556972 0.00015 86_[+2]_26 chrX:9466884-9467004 0.00015 56_[+2]_56 chr2L:18457086-18457206 0.00015 17_[+2]_95 chr3R:13215264-13215384 0.00015 105_[+2]_7 chr3R:11859260-11859380 0.00015 99_[+2]_13 chr2R:7370396-7370516 0.00015 69_[+2]_43 chr3L:16854369-16854489 0.00015 55_[+2]_57 chr2L:16590472-16590592 0.00015 11_[+2]_101 chr3L:16002500-16002620 0.00019 56_[+2]_56 chr2L:6100344-6100464 0.00019 70_[+2]_42 chr3L:8360424-8360544 0.00019 53_[+2]_59 chrX:9989307-9989427 0.00019 75_[+2]_37 chrX:13879545-13879665 0.00026 37_[+2]_75 chr2L:5751567-5751687 0.00026 13_[+2]_99 chr3R:16423521-16423641 0.00026 54_[+2]_58 chrX:15080066-15080186 0.00026 6_[+2]_106 chr3R:10177235-10177355 0.00032 13_[+2]_99 chr3R:9389113-9389233 0.00032 87_[+2]_25 chr2L:16255652-16255772 0.00032 14_[+2]_98 chr2L:7334223-7334343 0.00032 30_[+2]_82 chr3L:10757056-10757176 0.00032 74_[+2]_38 chr3L:41828-41948 0.00032 6_[+2]_106 chrX:9987783-9987903 0.00032 59_[+2]_53 chrX:7290953-7291073 0.00035 6_[+2]_106 chrX:15620557-15620677 0.00035 26_[+2]_86 chr2L:12524335-12524455 0.00035 74_[+2]_38 chr3L:2835893-2836013 0.00041 39_[+2]_73 chrX:9466636-9466756 0.00041 86_[+2]_26 chrX:13747740-13747860 0.00041 20_[+2]_92 chr3L:12615174-12615294 0.00041 109_[+2]_3 chrX:21055193-21055313 0.00044 68_[+2]_44 chr2R:15800064-15800184 0.00044 36_[+2]_76 chr3R:31503835-31503955 0.00044 76_[+2]_36 chrX:16765058-16765178 0.00044 27_[+2]_85 chr2L:18943417-18943537 0.00047 61_[+2]_51 chrX:8061958-8062078 0.00051 15_[+2]_97 chr3R:29570389-29570509 0.00059 60_[+2]_52 chr2R:11595177-11595297 0.00059 91_[+2]_21 chr3L:12040470-12040590 0.00059 89_[+2]_23 chr2R:14336205-14336325 0.00059 47_[+2]_65 chrX:13644775-13644895 0.00059 76_[+2]_36 chrX:17149757-17149877 0.00063 43_[+2]_69 chr2L:20812644-20812764 0.00063 85_[+2]_27 chr2L:168443-168563 0.00067 85_[+2]_27 chr3R:16340747-16340867 0.00067 45_[+2]_67 chr3R:16281434-16281554 0.00071 98_[+2]_14 chrX:7540906-7541026 0.00082 [+2]_112 chr3R:9933419-9933539 0.00089 46_[+2]_66 chrX:335018-335138 0.00099 46_[+2]_66 chr3R:10177027-10177147 0.00099 54_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=113 chr3L:16173949-16174069 ( 52) AAAAAAAA 1 chrX:17542900-17543020 ( 8) AAAAAAAA 1 chr3R:11646989-11647109 ( 77) AAAAAAAA 1 chr3R:8349958-8350078 ( 96) AAAAAAAA 1 chrX:12672838-12672958 ( 88) AAAAAAAA 1 chr3L:5551192-5551312 ( 38) AAAAAAAA 1 chr3L:7134975-7135095 ( 5) AAAAAAAA 1 chr3R:15112375-15112495 ( 49) AAAAAAAA 1 chr2R:15906100-15906220 ( 90) AAAAAAAA 1 chrX:8062161-8062281 ( 95) AAAAAAAA 1 chr2L:10794163-10794283 ( 44) AAAAAAAA 1 chr3R:24549895-24550015 ( 63) AAAAAAAA 1 chr3L:10365029-10365149 ( 68) AAAAAAAA 1 chr3L:12099609-12099729 ( 105) AAAAAAAA 1 chr3R:14421939-14422059 ( 76) AAAAAAAA 1 chr2R:19157697-19157817 ( 64) AAAAAAAA 1 chr3L:9551280-9551400 ( 2) AAAAAAAA 1 chrX:3720355-3720475 ( 102) AAAAAAAA 1 chrX:18544934-18545054 ( 79) AAAAAAAA 1 chrX:4435056-4435176 ( 92) AAAAAAAA 1 chr3L:2874170-2874290 ( 111) AAAAAAAA 1 chr3L:3782983-3783103 ( 3) AAAAAAAA 1 chrX:4941660-4941780 ( 65) AAAAAAAA 1 chrX:17488541-17488661 ( 3) AAAAAAAA 1 chr2L:20486909-20487029 ( 5) AAAAAAAA 1 chr2R:18879261-18879381 ( 54) AAAAAAAA 1 chrX:19359277-19359397 ( 60) AAAAAAAA 1 chr3R:10539787-10539907 ( 91) AAAAAAAA 1 chrX:8592772-8592892 ( 75) AAAAAAAA 1 chr2R:15533200-15533320 ( 66) AAAAAAAA 1 chr2R:17266144-17266264 ( 88) AAAAAAAA 1 chr3R:23319035-23319155 ( 91) AAAAAAAA 1 chrX:12675377-12675497 ( 16) AAAAAAAA 1 chr3L:11442461-11442581 ( 113) AAAAAAAA 1 chr2R:19617275-19617395 ( 113) AAAAAAAA 1 chr3R:26004520-26004640 ( 34) AAAAAAAA 1 chrX:3382911-3383031 ( 95) AAAAAAAA 1 chrX:7067343-7067463 ( 113) AAAAAAAA 1 chr2R:15664672-15664792 ( 19) AAAAAAAA 1 chrX:17806457-17806577 ( 105) AAAAAAAA 1 chr3L:682583-682703 ( 84) AAAAAAAA 1 chrX:11785140-11785260 ( 44) AAAAAAAA 1 chrX:17522702-17522822 ( 45) AAAAAAAA 1 chr3L:14486773-14486893 ( 20) AAAAAAAA 1 chr3R:13524778-13524898 ( 74) AAAAAAAA 1 chrX:9344293-9344413 ( 39) AAAAAAAA 1 chrX:9077714-9077834 ( 66) AAAAAAAA 1 chr2L:8420407-8420527 ( 109) AAAAAGAA 1 chr3R:13816408-13816528 ( 74) AAAAAGAA 1 chrX:7097565-7097685 ( 4) AAAAAGAA 1 chr2R:10057975-10058095 ( 60) AAAAAGAA 1 chr3R:21944033-21944153 ( 70) AAAAAGAA 1 chr3L:11368505-11368625 ( 100) AAAAAGAA 1 chr2R:14987113-14987233 ( 81) AAAAAGAA 1 chrX:5051184-5051304 ( 42) AAAAAGAA 1 chr3R:8705618-8705738 ( 91) AAAAAGAA 1 chr2R:22586961-22587081 ( 93) AAAAAGAA 1 chr3R:30285102-30285222 ( 53) AAAAAGAA 1 chr3L:8822085-8822205 ( 85) AAAAAGAA 1 chr2L:13545884-13546004 ( 23) AACAAAAA 1 chr2R:16159865-16159985 ( 12) AACAAAAA 1 chr2R:11180822-11180942 ( 56) AACAAAAA 1 chrX:13948901-13949021 ( 57) AACAAAAA 1 chr3R:20556852-20556972 ( 87) AACAAAAA 1 chrX:9466884-9467004 ( 57) AACAAAAA 1 chr2L:18457086-18457206 ( 18) AACAAAAA 1 chr3R:13215264-13215384 ( 106) AACAAAAA 1 chr3R:11859260-11859380 ( 100) AACAAAAA 1 chr2R:7370396-7370516 ( 70) AACAAAAA 1 chr3L:16854369-16854489 ( 56) AACAAAAA 1 chr2L:16590472-16590592 ( 12) AACAAAAA 1 chr3L:16002500-16002620 ( 57) AAAAACAA 1 chr2L:6100344-6100464 ( 71) AAAAACAA 1 chr3L:8360424-8360544 ( 54) AAAAACAA 1 chrX:9989307-9989427 ( 76) AAAAACAA 1 chrX:13879545-13879665 ( 38) AAAAGAAA 1 chr2L:5751567-5751687 ( 14) AACAAGAA 1 chr3R:16423521-16423641 ( 55) AACAAGAA 1 chrX:15080066-15080186 ( 7) AACAAGAA 1 chr3R:10177235-10177355 ( 14) AATAAAAA 1 chr3R:9389113-9389233 ( 88) AATAAAAA 1 chr2L:16255652-16255772 ( 15) AATAAAAA 1 chr2L:7334223-7334343 ( 31) AATAAAAA 1 chr3L:10757056-10757176 ( 75) AATAAAAA 1 chr3L:41828-41948 ( 7) AATAAAAA 1 chrX:9987783-9987903 ( 60) AATAAAAA 1 chrX:7290953-7291073 ( 7) AACAACAA 1 chrX:15620557-15620677 ( 27) AACAACAA 1 chr2L:12524335-12524455 ( 75) AACAACAA 1 chr3L:2835893-2836013 ( 40) AAAATAAA 1 chrX:9466636-9466756 ( 87) AAAATAAA 1 chrX:13747740-13747860 ( 21) AAAATAAA 1 chr3L:12615174-12615294 ( 110) AAAATAAA 1 chrX:21055193-21055313 ( 69) AAAAGGAA 1 chr2R:15800064-15800184 ( 37) AAAAGGAA 1 chr3R:31503835-31503955 ( 77) AAAAGGAA 1 chrX:16765058-16765178 ( 28) AAAAGGAA 1 chr2L:18943417-18943537 ( 62) AACAGAAA 1 chrX:8061958-8062078 ( 16) AATAAGAA 1 chr3R:29570389-29570509 ( 61) AAAACAAA 1 chr2R:11595177-11595297 ( 92) AAAAGCAA 1 chr3L:12040470-12040590 ( 90) AAAAGCAA 1 chr2R:14336205-14336325 ( 48) AAAACAAA 1 chrX:13644775-13644895 ( 77) AAAAGCAA 1 chrX:17149757-17149877 ( 44) AATAACAA 1 chr2L:20812644-20812764 ( 86) AATAACAA 1 chr2L:168443-168563 ( 86) AAAATGAA 1 chr3R:16340747-16340867 ( 46) AAAATGAA 1 chr3R:16281434-16281554 ( 99) AACATAAA 1 chrX:7540906-7541026 ( 1) AATAGAAA 1 chr3R:9933419-9933539 ( 47) AACAGCAA 1 chrX:335018-335138 ( 47) AAAAAACA 1 chr3R:10177027-10177147 ( 55) AAAACCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.19254 E= 4.7e-044 174 -1346 -1346 -1346 174 -1346 -1346 -1346 126 -14 -1346 -158 174 -1346 -1346 -1346 145 -294 -108 -223 119 -72 -8 -1346 173 -453 -1346 -1346 174 -1346 -1346 -1346 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 4.7e-044 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.716814 0.185841 0.000000 0.097345 1.000000 0.000000 0.000000 0.000000 0.814159 0.026549 0.097345 0.061947 0.681416 0.123894 0.194690 0.000000 0.991150 0.008850 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CYSCCGCC MEME-3 width = 8 sites = 19 llr = 186 E-value = 7.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a55a71a9 probability G ::5::9:1 matrix T :5::3::: bits 2.3 * * * 2.1 * * * 1.8 * * *** 1.6 * * *** Relative 1.4 * ****** Entropy 1.1 * ****** (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCCGCC consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9139248-9139368 20 3.03e-06 tatcccccat cccccgcc tcctcccctc chr2R:8952678-8952798 3 3.03e-06 TG CCCCCGCC AAATGTGGGA chrX:17149757-17149877 100 3.03e-06 CAGgcccgtg cccccgcc ccggccccgg chr3L:8822085-8822205 4 3.03e-06 CAG CCCCCGCC CCCAACATCA chr3R:9933419-9933539 55 6.09e-06 ACAACAGCAA CCGCCGCC GGGGGAGCAA chrX:9344293-9344413 75 6.09e-06 CGACCATGGG CCGCCGCC GTCGCCTCGA chr2L:168443-168563 13 1.04e-05 TTACTTCTTG CTCCCGCC AAGCGGTCTT chr3L:682583-682703 26 1.04e-05 tgtgggtgAC CTCCCGCC CGGCAAAAAA chr3R:24935889-24936009 106 1.48e-05 TTGTGCCCCT CTGCCGCC TGCGATC chr3R:16340747-16340867 108 1.48e-05 acctccgccg ctgccgcc accac chr2R:11595177-11595297 102 1.91e-05 AAAAGCAATA CCCCTGCC CTTTTTTCAG chr3L:22401669-22401789 38 3.58e-05 ATAGCGACAG CTGCTGCC GAGTGCCGGA chr3R:14722688-14722808 31 3.58e-05 TTTGTTTTGC CTGCTGCC GCTGCTGTCT chrX:8592772-8592892 56 3.58e-05 gcttttgtcg ctgctgCC GCGCGAAGCA chr2R:12457550-12457670 1 3.58e-05 . CTGCTGCC GTTTCCTCTT chr2R:15284711-15284831 94 4.19e-05 TCGCCCCCAT CCCCCCCC TTTTCGCAAC chr3R:11646989-11647109 23 4.80e-05 CACGAAGTTG CCGCCGCG ACTGAGTCAC chr3L:21934500-21934620 58 5.67e-05 TATCACCCTA CTCCCGCG ATCCACCTTA chrX:7973432-7973552 102 5.67e-05 ACGACTCACG CTCCCCCC GGAATGCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9139248-9139368 3e-06 19_[+3]_93 chr2R:8952678-8952798 3e-06 2_[+3]_110 chrX:17149757-17149877 3e-06 99_[+3]_13 chr3L:8822085-8822205 3e-06 3_[+3]_109 chr3R:9933419-9933539 6.1e-06 54_[+3]_58 chrX:9344293-9344413 6.1e-06 74_[+3]_38 chr2L:168443-168563 1e-05 12_[+3]_100 chr3L:682583-682703 1e-05 25_[+3]_87 chr3R:24935889-24936009 1.5e-05 105_[+3]_7 chr3R:16340747-16340867 1.5e-05 107_[+3]_5 chr2R:11595177-11595297 1.9e-05 101_[+3]_11 chr3L:22401669-22401789 3.6e-05 37_[+3]_75 chr3R:14722688-14722808 3.6e-05 30_[+3]_82 chrX:8592772-8592892 3.6e-05 55_[+3]_57 chr2R:12457550-12457670 3.6e-05 [+3]_112 chr2R:15284711-15284831 4.2e-05 93_[+3]_19 chr3R:11646989-11647109 4.8e-05 22_[+3]_90 chr3L:21934500-21934620 5.7e-05 57_[+3]_55 chrX:7973432-7973552 5.7e-05 101_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYSCCGCC width=8 seqs=19 chrX:9139248-9139368 ( 20) CCCCCGCC 1 chr2R:8952678-8952798 ( 3) CCCCCGCC 1 chrX:17149757-17149877 ( 100) CCCCCGCC 1 chr3L:8822085-8822205 ( 4) CCCCCGCC 1 chr3R:9933419-9933539 ( 55) CCGCCGCC 1 chrX:9344293-9344413 ( 75) CCGCCGCC 1 chr2L:168443-168563 ( 13) CTCCCGCC 1 chr3L:682583-682703 ( 26) CTCCCGCC 1 chr3R:24935889-24936009 ( 106) CTGCCGCC 1 chr3R:16340747-16340867 ( 108) CTGCCGCC 1 chr2R:11595177-11595297 ( 102) CCCCTGCC 1 chr3L:22401669-22401789 ( 38) CTGCTGCC 1 chr3R:14722688-14722808 ( 31) CTGCTGCC 1 chrX:8592772-8592892 ( 56) CTGCTGCC 1 chr2R:12457550-12457670 ( 1) CTGCTGCC 1 chr2R:15284711-15284831 ( 94) CCCCCCCC 1 chr3R:11646989-11647109 ( 23) CCGCCGCG 1 chr3L:21934500-21934620 ( 58) CTCCCGCG 1 chrX:7973432-7973552 ( 102) CTCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 7.1e-001 -1089 229 -1089 -1089 -1089 121 -1089 85 -1089 137 120 -1089 -1089 229 -1089 -1089 -1089 185 -1089 -15 -1089 -96 212 -1089 -1089 229 -1089 -1089 -1089 213 -97 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 7.1e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.473684 0.000000 0.526316 0.000000 0.526316 0.473684 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.736842 0.000000 0.263158 0.000000 0.105263 0.894737 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.105263 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYSCCGCC MEME-3 regular expression -------------------------------------------------------------------------------- C[TC][CG]C[CT]GCC -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-4 width = 8 sites = 23 llr = 216 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C :::::::2 probability G a:a:a1a2 matrix T :a:7:9:6 bits 2.3 * * * * 2.1 * * * * 1.8 * * * * 1.6 *** * * Relative 1.4 *** *** Entropy 1.1 *** *** (13.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11570006-11570126 14 1.29e-05 CCTGCTTTCG GTGTGTGT GTGCGGTTTT chrX:13879545-13879665 22 1.29e-05 GTGTGTGGCA GTGTGTGT CCGTGTAGAA chr3L:5551192-5551312 111 1.29e-05 gtgcgtgagt gtgtgtgt gt chr2R:25115657-25115777 43 1.29e-05 gtatgtgtgg gtgtgtgt CTTCTGACTC chr2R:24957379-24957499 54 1.29e-05 CTTCGGACGT GTGTGTGT GTCGAATTTC chrX:9134337-9134457 15 1.29e-05 tgttgcgcgt gtgtgtgt gggcgtgGAG chr3L:11442461-11442581 62 1.29e-05 GCGGTATTGA GTGTGTGT AACTCCAGTA chr3L:16854369-16854489 11 1.29e-05 GTATGCGTGT GTGTGTGT GCATGGCCGT chr3L:682583-682703 11 1.29e-05 GCCtgtgtgt gtgtgtgt gggtgACCTC chr2R:18879261-18879381 81 2.20e-05 AAAAATCCCT GTGTGTGC GAGTGGAAAA chr3L:10534061-10534181 22 2.20e-05 CTTGTTGTTT GTGTGTGC TTTTTTTTTA chr3L:2818006-2818126 10 3.52e-05 TTTTGGCGA GTGAGTGT ATGGTCTTTT chrX:9466636-9466756 36 3.52e-05 AATGCTGCAC GTGAGTGT AAGGGAGACG chr2R:16131891-16132011 9 3.52e-05 GGTCTGGG GTGAGTGT TCCCCTCTTG chrX:8062161-8062281 72 4.43e-05 CGCCGTATCT GTGTGTGG GTTGTTTGTT chr3R:31682540-31682660 39 4.43e-05 ATTTTATTCG GTGTGTGG CTCTTTTTGT chr2R:11595177-11595297 29 5.36e-05 GGGGGACAAT GTGAGTGC TTCTGACTCT chr3R:24287317-24287437 60 5.36e-05 TAAGAAGTCG GTGAGTGC AAAGTCCCTG chrX:9077714-9077834 43 5.36e-05 CATATTCGTA GTGAGTGC TTCGTTGTGG chr3L:12615174-12615294 93 6.30e-05 CGAGTGGTGG GTGAGTGG GAACCATTAA chr2R:22596919-22597039 76 7.21e-05 TTCGCAGACA GTGTGGGT GGAAAGTTGG chrX:20468413-20468533 10 9.70e-05 TGAGTTCAG GGGTGTGT TGGGTGTAGT chr2L:7189849-7189969 94 1.03e-04 TGTCCTATCT GTGTGGGG AAACCAGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11570006-11570126 1.3e-05 13_[+4]_99 chrX:13879545-13879665 1.3e-05 21_[+4]_91 chr3L:5551192-5551312 1.3e-05 110_[+4]_2 chr2R:25115657-25115777 1.3e-05 42_[+4]_70 chr2R:24957379-24957499 1.3e-05 53_[+4]_59 chrX:9134337-9134457 1.3e-05 14_[+4]_98 chr3L:11442461-11442581 1.3e-05 61_[+4]_51 chr3L:16854369-16854489 1.3e-05 10_[+4]_102 chr3L:682583-682703 1.3e-05 10_[+4]_102 chr2R:18879261-18879381 2.2e-05 80_[+4]_32 chr3L:10534061-10534181 2.2e-05 21_[+4]_91 chr3L:2818006-2818126 3.5e-05 9_[+4]_103 chrX:9466636-9466756 3.5e-05 35_[+4]_77 chr2R:16131891-16132011 3.5e-05 8_[+4]_104 chrX:8062161-8062281 4.4e-05 71_[+4]_41 chr3R:31682540-31682660 4.4e-05 38_[+4]_74 chr2R:11595177-11595297 5.4e-05 28_[+4]_84 chr3R:24287317-24287437 5.4e-05 59_[+4]_53 chrX:9077714-9077834 5.4e-05 42_[+4]_70 chr3L:12615174-12615294 6.3e-05 92_[+4]_20 chr2R:22596919-22597039 7.2e-05 75_[+4]_37 chrX:20468413-20468533 9.7e-05 9_[+4]_103 chr2L:7189849-7189969 0.0001 93_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=23 chrX:11570006-11570126 ( 14) GTGTGTGT 1 chrX:13879545-13879665 ( 22) GTGTGTGT 1 chr3L:5551192-5551312 ( 111) GTGTGTGT 1 chr2R:25115657-25115777 ( 43) GTGTGTGT 1 chr2R:24957379-24957499 ( 54) GTGTGTGT 1 chrX:9134337-9134457 ( 15) GTGTGTGT 1 chr3L:11442461-11442581 ( 62) GTGTGTGT 1 chr3L:16854369-16854489 ( 11) GTGTGTGT 1 chr3L:682583-682703 ( 11) GTGTGTGT 1 chr2R:18879261-18879381 ( 81) GTGTGTGC 1 chr3L:10534061-10534181 ( 22) GTGTGTGC 1 chr3L:2818006-2818126 ( 10) GTGAGTGT 1 chrX:9466636-9466756 ( 36) GTGAGTGT 1 chr2R:16131891-16132011 ( 9) GTGAGTGT 1 chrX:8062161-8062281 ( 72) GTGTGTGG 1 chr3R:31682540-31682660 ( 39) GTGTGTGG 1 chr2R:11595177-11595297 ( 29) GTGAGTGC 1 chr3R:24287317-24287437 ( 60) GTGAGTGC 1 chrX:9077714-9077834 ( 43) GTGAGTGC 1 chr3L:12615174-12615294 ( 93) GTGAGTGG 1 chr2R:22596919-22597039 ( 76) GTGTGGGT 1 chrX:20468413-20468533 ( 10) GGGTGTGT 1 chr2L:7189849-7189969 ( 94) GTGTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 2.8e+001 -1117 -1117 228 -1117 -1117 -1117 -224 172 -1117 -1117 228 -1117 3 -1117 -1117 126 -1117 -1117 228 -1117 -1117 -1117 -125 165 -1117 -1117 228 -1117 -1117 9 -25 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.8e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.043478 0.956522 0.000000 0.000000 1.000000 0.000000 0.304348 0.000000 0.000000 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.086957 0.913043 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.173913 0.608696 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-4 regular expression -------------------------------------------------------------------------------- GTG[TA]GTG[TC] -------------------------------------------------------------------------------- Time 25.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-5 width = 8 sites = 19 llr = 189 E-value = 4.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a9a:::: pos.-specific C a:::1:89 probability G ::1:9:21 matrix T :::::a:: bits 2.3 * 2.1 * * 1.8 ** *** * 1.6 ** ***** Relative 1.4 ******** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9389113-9389233 71 1.35e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chr3L:20387908-20388028 107 1.35e-05 CGTGCACTTC CAAAGTCC AATTCG chr2L:7207783-7207903 67 1.35e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chrX:9139248-9139368 69 1.35e-05 CCGATAAATC CAAAGTCC GGCAGCAGCT chr2R:6148128-6148248 29 1.35e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chrX:20166795-20166915 86 1.35e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chrX:16765058-16765178 17 1.35e-05 ACAGTGGGAC CAAAGTCC TAAAAAAGGA chrX:17149757-17149877 34 1.35e-05 CACTCCAGAG CAAAGTCC ACAATAACAA chrX:8592772-8592892 96 1.35e-05 CGCCAGCATA CAAAGTCC AATCAGAATA chr3L:41828-41948 70 1.35e-05 GTGAGCGGTT CAAAGTCC ACAATTTCAG chrX:7100837-7100957 92 1.35e-05 GAACATGGCT CAAAGTCC GATTCGGATG chrX:8061958-8062078 87 2.71e-05 AAAGTTAAGC CAAAGTGC TGCGATTAAT chr3R:21592073-21592193 28 2.71e-05 ACTACATAAG CAAAGTGC GAGGCACAAA chr2L:18457086-18457206 60 2.71e-05 CCAACAACAA CAAAGtgc aaattgcact chr2R:9714248-9714368 88 3.64e-05 CACCACCATC CAGAGTCC ATGGTCTTAT chr3R:13524778-13524898 16 3.64e-05 AAACCAATTC CAGAGTCC GGCAAACAAC chr3L:19091549-19091669 76 5.00e-05 GATACAGATA CAAAGTCG AACTCGCAGA chr2R:12457550-12457670 56 5.00e-05 ATGGCCAACT CAAAGTCG AAGGCAAAAC chrX:21055193-21055313 88 6.33e-05 ACAAAAGCAA CAAACTCC AACTTCTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9389113-9389233 1.3e-05 70_[+5]_42 chr3L:20387908-20388028 1.3e-05 106_[+5]_6 chr2L:7207783-7207903 1.3e-05 66_[+5]_46 chrX:9139248-9139368 1.3e-05 68_[+5]_44 chr2R:6148128-6148248 1.3e-05 28_[+5]_84 chrX:20166795-20166915 1.3e-05 85_[+5]_27 chrX:16765058-16765178 1.3e-05 16_[+5]_96 chrX:17149757-17149877 1.3e-05 33_[+5]_79 chrX:8592772-8592892 1.3e-05 95_[+5]_17 chr3L:41828-41948 1.3e-05 69_[+5]_43 chrX:7100837-7100957 1.3e-05 91_[+5]_21 chrX:8061958-8062078 2.7e-05 86_[+5]_26 chr3R:21592073-21592193 2.7e-05 27_[+5]_85 chr2L:18457086-18457206 2.7e-05 59_[+5]_53 chr2R:9714248-9714368 3.6e-05 87_[+5]_25 chr3R:13524778-13524898 3.6e-05 15_[+5]_97 chr3L:19091549-19091669 5e-05 75_[+5]_37 chr2R:12457550-12457670 5e-05 55_[+5]_57 chrX:21055193-21055313 6.3e-05 87_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=19 chr3R:9389113-9389233 ( 71) CAAAGTCC 1 chr3L:20387908-20388028 ( 107) CAAAGTCC 1 chr2L:7207783-7207903 ( 67) CAAAGTCC 1 chrX:9139248-9139368 ( 69) CAAAGTCC 1 chr2R:6148128-6148248 ( 29) CAAAGTCC 1 chrX:20166795-20166915 ( 86) CAAAGTCC 1 chrX:16765058-16765178 ( 17) CAAAGTCC 1 chrX:17149757-17149877 ( 34) CAAAGTCC 1 chrX:8592772-8592892 ( 96) CAAAGTCC 1 chr3L:41828-41948 ( 70) CAAAGTCC 1 chrX:7100837-7100957 ( 92) CAAAGTCC 1 chrX:8061958-8062078 ( 87) CAAAGTGC 1 chr3R:21592073-21592193 ( 28) CAAAGTGC 1 chr2L:18457086-18457206 ( 60) CAAAGTGC 1 chr2R:9714248-9714368 ( 88) CAGAGTCC 1 chr3R:13524778-13524898 ( 16) CAGAGTCC 1 chr3L:19091549-19091669 ( 76) CAAAGTCG 1 chr2R:12457550-12457670 ( 56) CAAAGTCG 1 chrX:21055193-21055313 ( 88) CAAACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 4.6e-002 -1089 229 -1089 -1089 174 -1089 -1089 -1089 158 -1089 -97 -1089 174 -1089 -1089 -1089 -1089 -195 220 -1089 -1089 -1089 -1089 178 -1089 204 -39 -1089 -1089 213 -97 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.6e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.105263 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.842105 0.157895 0.000000 0.000000 0.894737 0.105263 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 31.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8896329-8896449 3.37e-01 120 chr3R:16334443-16334563 2.42e-01 120 chrX:7980918-7981038 3.27e-02 50_[+1(5.14e-05)]_36_[+1(5.14e-05)]_\ 7_[+1(8.78e-05)]_3 chr2L:16590472-16590592 1.75e-01 120 chrX:13116579-13116699 5.61e-02 54_[+1(5.14e-05)]_58 chrX:9077714-9077834 5.44e-03 42_[+4(5.36e-05)]_13_[+2(6.22e-05)]_\ 49 chr3L:22420949-22421069 4.84e-02 49_[+1(5.14e-05)]_63 chrX:9344293-9344413 3.77e-03 36_[+2(6.22e-05)]_30_[+3(6.09e-06)]_\ 38 chr2L:12524335-12524455 2.45e-01 120 chr3L:12615174-12615294 3.62e-04 48_[+1(5.14e-05)]_[+1(5.14e-05)]_28_\ [+4(6.30e-05)]_20 chr3R:13524778-13524898 1.77e-02 15_[+5(3.64e-05)]_29_[+2(6.22e-05)]_\ 11_[+2(6.22e-05)]_3_[+2(6.22e-05)]_30 chr3R:24004105-24004225 3.92e-02 11_[+1(8.78e-05)]_19_[+1(5.14e-05)]_\ 74 chr2L:20812644-20812764 4.58e-02 75_[+1(5.14e-05)]_37 chr3L:14059724-14059844 5.44e-02 120 chr3L:14486773-14486893 4.17e-02 18_[+2(6.22e-05)]_20_[+2(6.22e-05)]_\ 66 chr3R:16340747-16340867 4.45e-03 107_[+3(1.48e-05)]_5 chr3R:24935889-24936009 6.51e-02 105_[+3(1.48e-05)]_7 chrX:7194794-7194914 1.07e-02 29_[+1(8.78e-05)]_83 chrX:7100837-7100957 4.18e-02 91_[+5(1.35e-05)]_21 chr3R:21938708-21938828 1.56e-01 48_[+1(5.14e-05)]_6_[+1(5.14e-05)]_\ 50 chrX:3413070-3413190 2.63e-01 44_[+1(8.78e-05)]_16_[+1(5.14e-05)]_\ 44 chrX:10021932-10022052 1.24e-01 3_[+1(8.78e-05)]_20_[+1(5.14e-05)]_\ 81 chrX:17522702-17522822 2.75e-01 43_[+2(6.22e-05)]_[+2(6.22e-05)]_2_\ [+2(6.22e-05)]_51 chrX:11785140-11785260 2.70e-03 37_[+2(6.22e-05)]_[+2(6.22e-05)]_2_\ [+2(6.22e-05)]_57 chrX:4108122-4108242 7.13e-01 120 chr3L:682583-682703 3.96e-05 4_[+4(1.29e-05)]_[+4(4.43e-05)]_5_\ [+3(1.04e-05)]_50_[+2(6.22e-05)]_29 chr3L:16854369-16854489 1.24e-02 6_[+4(1.29e-05)]_106 chrX:9651215-9651335 3.20e-01 120 chr3R:5622173-5622293 4.37e-01 120 chrX:19485194-19485314 4.59e-01 14_[+1(8.78e-05)]_98 chr3R:9381092-9381212 5.08e-02 60_[+1(5.14e-05)]_52 chr2R:22078795-22078915 7.02e-02 120 chrX:17806457-17806577 1.17e-01 73_[+2(6.22e-05)]_23_[+2(6.22e-05)]_\ 8 chr2R:7370396-7370516 3.86e-03 120 chr2R:11214029-11214149 4.21e-01 120 chrX:8159125-8159245 9.16e-01 120 chrX:18866421-18866541 2.30e-01 100_[+1(5.14e-05)]_[+1(8.78e-05)]_4 chrX:9987783-9987903 4.03e-01 120 chr2R:9714248-9714368 1.12e-01 87_[+5(3.64e-05)]_25 chrX:15080066-15080186 8.60e-02 120 chr2L:2802689-2802809 7.09e-01 120 chr3L:9462936-9463056 2.76e-01 120 chr2R:15664672-15664792 2.50e-01 18_[+2(6.22e-05)]_94 chr2R:18760669-18760789 6.42e-01 120 chr2L:9945218-9945338 4.65e-01 120 chrX:7067343-7067463 9.10e-02 112_[+2(6.22e-05)] chrX:3382911-3383031 4.20e-02 92_[+2(6.22e-05)]_6_[+2(6.22e-05)]_\ 6 chr2R:17439604-17439724 4.04e-01 120 chr3R:19317438-19317558 7.19e-01 120 chr2R:17682169-17682289 4.05e-02 54_[+1(5.14e-05)]_58 chrX:4462104-4462224 2.36e-02 100_[+1(5.14e-05)]_[+1(5.14e-05)]_4 chr2L:7189849-7189969 2.90e-01 120 chr3R:26004520-26004640 2.20e-01 33_[+2(6.22e-05)]_21_[+2(6.22e-05)]_\ 50 chrX:15620557-15620677 2.56e-02 120 chr3L:8822085-8822205 1.37e-03 3_[+3(3.03e-06)]_109 chr3R:11859260-11859380 2.48e-01 120 chr2R:12457550-12457670 4.69e-03 [+3(3.58e-05)]_47_[+5(5.00e-05)]_57 chrX:7973432-7973552 1.73e-02 25_[+1(8.78e-05)]_5_[+1(5.14e-05)]_\ 55_[+3(5.67e-05)]_11 chr3R:16423521-16423641 2.67e-01 120 chr2R:15284711-15284831 3.50e-02 93_[+3(4.19e-05)]_19 chr2R:19617275-19617395 2.10e-03 112_[+2(6.22e-05)] chr2R:24980664-24980784 8.80e-01 120 chr3L:10534061-10534181 1.14e-02 21_[+4(2.20e-05)]_[+1(5.14e-05)]_30_\ [+1(5.14e-05)]_45 chr2R:20580829-20580949 1.20e-01 109_[+1(5.14e-05)]_3 chr3R:13215264-13215384 3.88e-01 120 chrX:8518101-8518221 2.52e-01 34_[+1(5.14e-05)]_78 chr3L:11442461-11442581 6.90e-03 61_[+4(1.29e-05)]_39_[+2(6.22e-05)]_\ 4 chr3L:18889376-18889496 7.18e-01 120 chr3R:30285102-30285222 2.36e-02 120 chr2R:7472432-7472552 2.99e-01 120 chrX:12675377-12675497 7.07e-02 15_[+2(6.22e-05)]_97 chr3L:41828-41948 3.67e-03 69_[+5(1.35e-05)]_43 chr2R:14027186-14027306 1.87e-02 62_[+1(5.14e-05)]_50 chr3R:24287317-24287437 2.11e-03 66_[+5(1.35e-05)]_46 chr3R:23319035-23319155 1.60e-01 88_[+2(6.22e-05)]_24 chr2R:17266144-17266264 5.20e-02 85_[+2(6.22e-05)]_27 chrX:9989307-9989427 3.22e-01 120 chr3R:27084841-27084961 1.99e-01 120 chr2R:15533200-15533320 1.38e-01 65_[+2(6.22e-05)]_47 chrX:16906169-16906289 1.08e-01 49_[+1(5.14e-05)]_[+1(5.14e-05)]_1_\ [+1(5.14e-05)]_46 chr3L:8360424-8360544 9.65e-02 120 chrX:8592772-8592892 2.90e-05 55_[+3(3.58e-05)]_11_[+2(6.22e-05)]_\ 13_[+5(1.35e-05)]_17 chr3R:9933419-9933539 2.30e-04 54_[+3(6.09e-06)]_14_[+3(4.19e-05)]_\ 36 chrX:13644775-13644895 3.56e-02 120 chr2L:3351948-3352068 4.76e-01 120 chr3R:30289443-30289563 2.80e-01 99_[+1(5.14e-05)]_13 chr2L:2806343-2806463 3.09e-01 20_[+5(9.59e-05)]_92 chr2R:18567357-18567477 5.25e-01 120 chr3L:2873202-2873322 5.53e-01 120 chr3R:10592970-10593090 5.02e-02 20_[+1(5.14e-05)]_92 chr3R:30014039-30014159 1.39e-01 120 chrX:17149757-17149877 1.53e-05 33_[+5(1.35e-05)]_58_[+3(3.03e-06)]_\ 13 chrX:16765058-16765178 3.07e-02 16_[+5(1.35e-05)]_96 chr3R:10539787-10539907 1.18e-02 83_[+2(6.22e-05)]_[+2(6.22e-05)]_21 chr3R:10177027-10177147 5.36e-01 120 chr2R:14336205-14336325 8.32e-03 96_[+1(8.78e-05)]_16 chrX:19359277-19359397 1.63e-01 40_[+2(6.22e-05)]_7_[+2(6.22e-05)]_\ 57 chr2R:23637970-23638090 1.26e-02 32_[+4(1.29e-05)]_[+4(1.29e-05)]_\ [+4(1.29e-05)]_64 chr3R:30005469-30005589 3.74e-02 64_[+1(5.14e-05)]_48 chr2R:18879261-18879381 5.48e-03 53_[+2(6.22e-05)]_19_[+4(2.20e-05)]_\ 32 chrX:15079288-15079408 3.79e-01 120 chr2L:20486909-20487029 1.16e-01 4_[+2(6.22e-05)]_1_[+2(6.22e-05)]_\ 99 chr3R:20547903-20548023 1.71e-02 120 chr2R:8952678-8952798 4.96e-02 2_[+3(3.03e-06)]_78_[+3(2.96e-05)]_\ 10_[+3(9.51e-05)]_6 chr2L:7175921-7176041 1.61e-01 120 chr2R:18432744-18432864 8.80e-01 120 chr3L:18080116-18080236 4.26e-02 32_[+1(8.78e-05)]_63_[+1(5.14e-05)]_\ 9 chrX:9134337-9134457 1.07e-02 12_[+4(1.29e-05)]_46_[+1(8.78e-05)]_\ 46 chr3R:11865261-11865381 5.80e-03 39_[+1(8.78e-05)]_4_[+1(5.14e-05)]_\ 61 chr3L:14145708-14145828 9.90e-01 120 chr3R:14722688-14722808 1.70e-02 19_[+1(8.78e-05)]_3_[+3(3.58e-05)]_\ 35_[+3(3.58e-05)]_28_[+1(5.14e-05)]_3 chrX:17488541-17488661 1.44e-01 2_[+2(6.22e-05)]_110 chr2L:18457086-18457206 2.65e-02 59_[+5(2.71e-05)]_53 chr3R:31503835-31503955 2.02e-01 120 chrX:20166795-20166915 3.91e-02 85_[+5(1.35e-05)]_27 chr3R:12717040-12717160 1.29e-02 [+1(5.14e-05)]_112 chr2R:6148128-6148248 2.36e-02 28_[+5(1.35e-05)]_84 chr2L:168443-168563 1.73e-03 12_[+3(1.04e-05)]_100 chrX:4941660-4941780 9.21e-02 57_[+2(6.22e-05)]_[+2(6.22e-05)]_47 chr3L:4178289-4178409 5.45e-02 120 chrX:9466884-9467004 3.14e-02 120 chrX:5769004-5769124 1.04e-01 13_[+1(8.78e-05)]_9_[+1(5.14e-05)]_\ 82 chr3L:5943662-5943782 7.55e-02 76_[+1(5.14e-05)]_3_[+1(5.14e-05)]_\ 25 chr2L:18943417-18943537 2.79e-02 120 chr3L:3782983-3783103 3.32e-02 [+2(6.22e-05)]_112 chrX:20468413-20468533 8.20e-03 9_[+4(9.70e-05)]_103 chrX:9139248-9139368 4.05e-04 19_[+3(3.03e-06)]_4_[+3(7.40e-05)]_\ 29_[+5(1.35e-05)]_44 chr3L:2874170-2874290 4.35e-02 110_[+2(6.22e-05)]_2 chrX:4435056-4435176 3.70e-01 50_[+2(6.22e-05)]_30_[+2(6.22e-05)]_\ 24 chr3R:21634815-21634935 2.40e-02 32_[+3(7.40e-05)]_65_[+1(5.14e-05)]_\ 7 chrX:18544934-18545054 1.32e-01 76_[+2(6.22e-05)]_36 chrX:3720355-3720475 3.79e-02 101_[+2(6.22e-05)]_11 chr3R:25493929-25494049 6.39e-01 120 chr3L:10757056-10757176 4.92e-01 120 chr3R:25459309-25459429 9.87e-01 120 chr3R:20556852-20556972 1.67e-01 120 chr2L:5494185-5494305 6.40e-01 120 chr2R:16131891-16132011 3.52e-02 8_[+4(3.52e-05)]_104 chr2L:7334223-7334343 7.36e-03 51_[+5(9.59e-05)]_61 chr2L:7207783-7207903 4.11e-02 66_[+5(1.35e-05)]_46 chr3L:22401669-22401789 3.26e-02 37_[+3(3.58e-05)]_75 chr3R:19070689-19070809 2.68e-01 120 chr2R:21543352-21543472 1.07e-02 81_[+1(5.14e-05)]_31 chr3L:9551280-9551400 8.41e-03 [+2(6.22e-05)]_88_[+1(5.14e-05)]_16 chr2R:22586961-22587081 3.68e-02 120 chr2R:21386738-21386858 4.61e-01 120 chr3R:8705618-8705738 7.19e-03 48_[+1(8.78e-05)]_17_[+1(8.78e-05)]_\ 39 chr2R:22399520-22399640 4.81e-01 120 chr2L:135840-135960 4.22e-01 120 chr2L:5751567-5751687 4.12e-02 97_[+1(5.14e-05)]_15 chrX:7290953-7291073 9.21e-03 53_[+1(5.14e-05)]_59 chr3L:19833375-19833495 1.89e-01 120 chr3R:23993535-23993655 6.52e-02 16_[+3(8.28e-05)]_96 chrX:13111884-13112004 1.95e-01 120 chr3L:20387908-20388028 1.26e-02 106_[+5(1.35e-05)]_6 chr2R:19157697-19157817 3.45e-01 60_[+2(6.22e-05)]_52 chr3L:18791232-18791352 5.48e-02 56_[+1(5.14e-05)]_56 chr2L:7466422-7466542 2.71e-01 120 chr2L:16255652-16255772 2.76e-02 56_[+1(8.78e-05)]_56 chrX:12890500-12890620 2.13e-01 102_[+1(5.14e-05)]_10 chr2L:524545-524665 7.05e-02 120 chr3R:14421939-14422059 1.00e-01 74_[+2(6.22e-05)]_38 chr2R:8595930-8596050 9.67e-01 120 chr3L:12099609-12099729 2.58e-01 104_[+2(6.22e-05)]_8 chrX:13948901-13949021 6.10e-02 120 chr3L:10365029-10365149 2.45e-01 49_[+2(6.22e-05)]_9_[+2(6.22e-05)]_\ 46 chrX:5051184-5051304 6.19e-03 83_[+1(8.78e-05)]_29 chr2R:14987113-14987233 6.58e-02 120 chr3L:3338195-3338315 9.43e-01 120 chr3R:24549895-24550015 3.09e-01 62_[+2(6.22e-05)]_50 chr2R:15800064-15800184 5.45e-02 120 chr2R:24957379-24957499 1.11e-02 51_[+4(1.29e-05)]_61 chr3L:11368505-11368625 3.87e-01 120 chrX:5988268-5988388 3.40e-01 120 chr3R:9389113-9389233 5.41e-03 70_[+5(1.35e-05)]_42 chr3R:27925797-27925917 9.65e-01 120 chr3R:21944033-21944153 7.55e-02 120 chr2R:10057975-10058095 1.90e-02 5_[+1(8.78e-05)]_107 chr3R:31682540-31682660 1.86e-02 38_[+4(4.43e-05)]_24_[+1(8.78e-05)]_\ 26_[+1(5.14e-05)]_8 chrX:13747740-13747860 3.72e-01 120 chr2L:10794163-10794283 3.33e-02 42_[+2(6.22e-05)]_70 chrX:9466636-9466756 5.21e-03 35_[+4(3.52e-05)]_77 chr2R:8143577-8143697 1.48e-01 120 chr2R:22596919-22597039 2.38e-02 75_[+4(7.21e-05)]_37 chr2L:20916940-20917060 2.81e-01 120 chr3R:10177235-10177355 5.23e-01 120 chrX:8062161-8062281 7.51e-03 71_[+4(4.43e-05)]_15_[+2(6.22e-05)]_\ 18 chr2R:11180822-11180942 2.43e-01 120 chr2R:25115657-25115777 2.92e-03 42_[+4(1.29e-05)]_70 chr2R:9814188-9814308 3.66e-01 43_[+1(8.78e-05)]_69 chr3L:8028094-8028214 1.08e-01 99_[+1(5.14e-05)]_13 chr3L:5141506-5141626 7.28e-01 120 chr2R:15906100-15906220 1.19e-01 55_[+2(6.22e-05)]_26_[+2(6.22e-05)]_\ 23 chr3R:15112375-15112495 4.67e-02 41_[+2(6.22e-05)]_[+2(6.22e-05)]_\ [+2(6.22e-05)]_55 chr3L:7134975-7135095 6.49e-03 4_[+2(6.22e-05)]_86_[+1(5.14e-05)]_\ 14 chrX:7097565-7097685 2.09e-02 120 chr2L:12527761-12527881 8.20e-01 120 chr3R:5112043-5112163 4.25e-01 120 chr2L:6100344-6100464 3.65e-02 120 chr3L:12040470-12040590 9.83e-02 120 chrX:7540906-7541026 7.36e-01 120 chrX:19165419-19165539 2.09e-01 57_[+1(5.14e-05)]_25_[+1(8.78e-05)]_\ 22 chrX:21055193-21055313 4.60e-03 87_[+5(6.33e-05)]_25 chr3R:24039307-24039427 1.51e-01 120 chr3L:19091549-19091669 1.42e-01 75_[+5(5.00e-05)]_37 chr3L:5551192-5551312 1.27e-03 37_[+2(6.22e-05)]_63_[+4(1.29e-05)]_\ 4 chr3R:13816408-13816528 1.96e-01 120 chr2L:19156112-19156232 2.02e-01 34_[+1(5.14e-05)]_78 chr2L:13893653-13893773 8.56e-01 120 chr3R:29506707-29506827 8.89e-01 120 chr2L:8420407-8420527 5.02e-02 120 chrX:12672838-12672958 1.16e-01 75_[+2(6.22e-05)]_4_[+2(6.22e-05)]_\ 25 chr3R:8349958-8350078 1.90e-02 30_[+5(7.27e-05)]_55_[+2(6.22e-05)]_\ 19 chr3R:24117065-24117185 3.59e-01 120 chr2R:16159865-16159985 1.65e-02 102_[+1(8.78e-05)]_10 chr3L:8775505-8775625 4.07e-01 34_[+1(8.78e-05)]_55_[+1(5.14e-05)]_\ 15 chr3L:3326650-3326770 2.94e-01 120 chr3R:16281434-16281554 1.37e-01 120 chr3L:21934500-21934620 1.74e-01 57_[+3(5.67e-05)]_55 chr2R:17136257-17136377 7.14e-02 55_[+1(8.78e-05)]_57 chr3R:21823214-21823334 8.40e-01 120 chr2L:13545884-13546004 1.97e-01 120 chr3R:11646989-11647109 1.75e-03 22_[+3(4.80e-05)]_46_[+2(6.22e-05)]_\ 36 chr3L:18819741-18819861 9.13e-02 72_[+1(5.14e-05)]_40 chr3L:2835893-2836013 3.63e-01 120 chrX:13879545-13879665 5.36e-04 9_[+4(1.29e-05)]_4_[+4(1.29e-05)]_\ 61_[+1(8.78e-05)]_22 chr2L:1617856-1617976 5.54e-01 120 chr2R:11595177-11595297 2.10e-05 28_[+4(5.36e-05)]_16_[+1(5.14e-05)]_\ 41_[+3(1.91e-05)]_11 chr3R:23763895-23764015 7.20e-01 120 chr3R:29570389-29570509 1.11e-01 120 chr3L:17500737-17500857 6.22e-02 120 chr3L:20317125-20317245 9.72e-01 120 chr3L:539954-540074 9.42e-02 32_[+1(5.14e-05)]_80 chr3R:23728248-23728368 2.77e-02 32_[+1(5.14e-05)]_[+1(5.14e-05)]_72 chr2R:21389303-21389423 8.42e-01 120 chr3L:2818006-2818126 7.83e-02 9_[+4(3.52e-05)]_103 chrX:17542900-17543020 1.95e-01 4_[+2(6.22e-05)]_108 chr3R:21592073-21592193 3.48e-03 27_[+5(2.71e-05)]_85 chr3L:13497846-13497966 1.66e-01 120 chrX:11570006-11570126 5.79e-05 13_[+4(1.29e-05)]_6_[+1(5.14e-05)]_\ 9_[+1(5.14e-05)]_68 chr3L:16002500-16002620 9.71e-02 120 chr3L:16173949-16174069 1.04e-01 50_[+2(6.22e-05)]_62 chr3L:6155246-6155366 3.46e-02 47_[+1(5.14e-05)]_9_[+1(5.14e-05)]_\ 48 chrX:18273329-18273449 9.88e-01 120 chr3R:15091797-15091917 1.27e-01 43_[+1(5.14e-05)]_8_[+1(5.14e-05)]_\ 53 chrX:335018-335138 4.67e-02 3_[+1(5.14e-05)]_109 chr3L:540154-540274 1.69e-01 120 chrX:21127391-21127511 4.87e-01 120 chrX:15552559-15552679 4.96e-01 120 chrX:8061958-8062078 9.26e-03 86_[+5(2.71e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************