******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/spab.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:17577047-17577167 1.0000 120 chr3L:14145733-14145853 1.0000 120 chr3L:6391463-6391583 1.0000 120 chr3L:5864000-5864120 1.0000 120 chr2R:18746909-18747029 1.0000 120 chr3R:18146807-18146927 1.0000 120 chr3L:16189750-16189870 1.0000 120 chr3L:6447838-6447958 1.0000 120 chr3L:15187933-15188053 1.0000 120 chr2R:9498842-9498962 1.0000 120 chr3R:24953287-24953407 1.0000 120 chr3L:13264002-13264122 1.0000 120 chr2L:2484288-2484408 1.0000 120 chr3L:3106254-3106374 1.0000 120 chr2R:8995146-8995266 1.0000 120 chr3L:12706613-12706733 1.0000 120 chr3L:15005894-15006014 1.0000 120 chr3R:26004522-26004642 1.0000 120 chr2L:3562474-3562594 1.0000 120 chr3R:24970809-24970929 1.0000 120 chr3R:29279702-29279822 1.0000 120 chr3R:29290961-29291081 1.0000 120 chr3R:7953129-7953249 1.0000 120 chr2R:15000519-15000639 1.0000 120 chr2L:2802713-2802833 1.0000 120 chr3L:8860085-8860205 1.0000 120 chr3L:17926622-17926742 1.0000 120 chr2R:15047002-15047122 1.0000 120 chr2R:20580797-20580917 1.0000 120 chr3R:25493918-25494038 1.0000 120 chr3R:22137115-22137235 1.0000 120 chr2R:21224989-21225109 1.0000 120 chr3R:9389115-9389235 1.0000 120 chr2L:20002187-20002307 1.0000 120 chr3R:24004102-24004222 1.0000 120 chrX:13879570-13879690 1.0000 120 chr3R:30014042-30014162 1.0000 120 chr3R:10177047-10177167 1.0000 120 chr3L:3073579-3073699 1.0000 120 chr2R:15046098-15046218 1.0000 120 chr3L:14450653-14450773 1.0000 120 chr2R:17266170-17266290 1.0000 120 chr3L:13407031-13407151 1.0000 120 chr3R:10592947-10593067 1.0000 120 chr3L:21602447-21602567 1.0000 120 chr3L:14350973-14351093 1.0000 120 chr3R:10630134-10630254 1.0000 120 chrX:18544882-18545002 1.0000 120 chr3R:18469618-18469738 1.0000 120 chr2L:5479239-5479359 1.0000 120 chr3R:27069364-27069484 1.0000 120 chr3L:18080138-18080258 1.0000 120 chr3R:30357222-30357342 1.0000 120 chr2L:20989636-20989756 1.0000 120 chr3R:10533305-10533425 1.0000 120 chr3L:16259689-16259809 1.0000 120 chr2R:8595963-8596083 1.0000 120 chr3R:22455720-22455840 1.0000 120 chr2R:15063795-15063915 1.0000 120 chr2R:9071811-9071931 1.0000 120 chr3L:13227044-13227164 1.0000 120 chr3R:14292435-14292555 1.0000 120 chr2L:18122039-18122159 1.0000 120 chr2R:17499254-17499374 1.0000 120 chr3L:4749298-4749418 1.0000 120 chr2L:5288426-5288546 1.0000 120 chr2R:18215452-18215572 1.0000 120 chr3L:4747558-4747678 1.0000 120 chr3L:6355198-6355318 1.0000 120 chr2R:15825552-15825672 1.0000 120 chr2R:18194808-18194928 1.0000 120 chr3L:4336719-4336839 1.0000 120 chr2R:17831955-17832075 1.0000 120 chrX:17332507-17332627 1.0000 120 chr2R:18567339-18567459 1.0000 120 chr2L:18946271-18946391 1.0000 120 chr2R:9714277-9714397 1.0000 120 chr3L:16168907-16169027 1.0000 120 chr2L:2485467-2485587 1.0000 120 chr2L:1459508-1459628 1.0000 120 chr3R:13916722-13916842 1.0000 120 chr2R:14929659-14929779 1.0000 120 chr2R:19617333-19617453 1.0000 120 chr3R:10539582-10539702 1.0000 120 chrX:19158599-19158719 1.0000 120 chr2R:15100634-15100754 1.0000 120 chr2R:12767332-12767452 1.0000 120 chr2R:18879263-18879383 1.0000 120 chr2R:11083851-11083971 1.0000 120 chr3R:22184206-22184326 1.0000 120 chr3L:20582463-20582583 1.0000 120 chr3L:2873182-2873302 1.0000 120 chr3L:13178368-13178488 1.0000 120 chr2L:16590781-16590901 1.0000 120 chr3L:2533192-2533312 1.0000 120 chr2L:20916924-20917044 1.0000 120 chr3R:14421943-14422063 1.0000 120 chr3L:1692963-1693083 1.0000 120 chr2R:15664671-15664791 1.0000 120 chr2L:5372673-5372793 1.0000 120 chr3L:16489942-16490062 1.0000 120 chr3L:8822433-8822553 1.0000 120 chr3R:29570431-29570551 1.0000 120 chrX:6708243-6708363 1.0000 120 chr2L:3351995-3352115 1.0000 120 chr3R:21634857-21634977 1.0000 120 chr3L:10757060-10757180 1.0000 120 chr3R:6106924-6107044 1.0000 120 chr3R:13215235-13215355 1.0000 120 chr2L:4361556-4361676 1.0000 120 chr2L:723940-724060 1.0000 120 chr3L:10365050-10365170 1.0000 120 chr2L:646658-646778 1.0000 120 chr3R:29091738-29091858 1.0000 120 chr2L:5494094-5494214 1.0000 120 chr2R:11551163-11551283 1.0000 120 chr3R:30005487-30005607 1.0000 120 chr2R:18760690-18760810 1.0000 120 chr3R:15631062-15631182 1.0000 120 chr2L:19144267-19144387 1.0000 120 chrX:14017563-14017683 1.0000 120 chr3R:27179075-27179195 1.0000 120 chr2R:17136183-17136303 1.0000 120 chr2L:2806385-2806505 1.0000 120 chr3R:30285149-30285269 1.0000 120 chr3R:14389426-14389546 1.0000 120 chr3L:8360437-8360557 1.0000 120 chr3L:6371548-6371668 1.0000 120 chr3L:15180948-15181068 1.0000 120 chr3R:30270742-30270862 1.0000 120 chr2L:15388279-15388399 1.0000 120 chr2L:19359955-19360075 1.0000 120 chr3L:15847752-15847872 1.0000 120 chr3R:10589347-10589467 1.0000 120 chr2L:1886954-1887074 1.0000 120 chr2R:21799436-21799556 1.0000 120 chr3L:776351-776471 1.0000 120 chr3L:22910063-22910183 1.0000 120 chr3R:21826254-21826374 1.0000 120 chr3R:6102551-6102671 1.0000 120 chr3L:7135017-7135137 1.0000 120 chr3R:13716241-13716361 1.0000 120 chr2L:5751590-5751710 1.0000 120 chr2L:13146396-13146516 1.0000 120 chr3R:21653153-21653273 1.0000 120 chrX:18929516-18929636 1.0000 120 chr2L:15909438-15909558 1.0000 120 chr2L:11069641-11069761 1.0000 120 chr2R:13468939-13469059 1.0000 120 chr3L:7262633-7262753 1.0000 120 chr3R:5622157-5622277 1.0000 120 chr2L:20956972-20957092 1.0000 120 chr2R:11749574-11749694 1.0000 120 chrX:18540374-18540494 1.0000 120 chr3R:10829881-10830001 1.0000 120 chr3R:18998456-18998576 1.0000 120 chr3R:6954628-6954748 1.0000 120 chr2R:10474698-10474818 1.0000 120 chr3L:12099649-12099769 1.0000 120 chr3R:30259740-30259860 1.0000 120 chr3R:8922984-8923104 1.0000 120 chr3L:2835892-2836012 1.0000 120 chr3R:17202488-17202608 1.0000 120 chr3R:9594333-9594453 1.0000 120 chr2R:21883178-21883298 1.0000 120 chr3R:7646353-7646473 1.0000 120 chr3R:28848095-28848215 1.0000 120 chrX:7540875-7540995 1.0000 120 chrX:6730783-6730903 1.0000 120 chrX:19843006-19843126 1.0000 120 chr3L:8881931-8882051 1.0000 120 chrX:5301062-5301182 1.0000 120 chr3L:21253086-21253206 1.0000 120 chr3L:9551291-9551411 1.0000 120 chr2L:13545893-13546013 1.0000 120 chr2R:17439586-17439706 1.0000 120 chrX:4435077-4435197 1.0000 120 chr2L:16590981-16591101 1.0000 120 chr3R:21598024-21598144 1.0000 120 chr3L:4383254-4383374 1.0000 120 chr2R:18566089-18566209 1.0000 120 chr2R:10057965-10058085 1.0000 120 chrX:17488503-17488623 1.0000 120 chrX:8592789-8592909 1.0000 120 chr2L:524518-524638 1.0000 120 chr3R:30256369-30256489 1.0000 120 chr3L:13497827-13497947 1.0000 120 chr3R:14673108-14673228 1.0000 120 chr3R:24549868-24549988 1.0000 120 chrX:14134053-14134173 1.0000 120 chr3R:28914203-28914323 1.0000 120 chr3R:10455057-10455177 1.0000 120 chr3L:21042612-21042732 1.0000 120 chr2R:15906093-15906213 1.0000 120 chr3L:3338954-3339074 1.0000 120 chr3R:5331887-5332007 1.0000 120 chr3L:10923034-10923154 1.0000 120 chr2R:11033711-11033831 1.0000 120 chr3R:20556858-20556978 1.0000 120 chr3L:20635725-20635845 1.0000 120 chr2R:20065871-20065991 1.0000 120 chrX:18273284-18273404 1.0000 120 chr3L:20632464-20632584 1.0000 120 chr3L:6458830-6458950 1.0000 120 chr3R:31963283-31963403 1.0000 120 chr3L:6458013-6458133 1.0000 120 chr2R:8307883-8308003 1.0000 120 chr3L:16174884-16175004 1.0000 120 chr3L:8014035-8014155 1.0000 120 chr3R:24143909-24144029 1.0000 120 chr3R:15596116-15596236 1.0000 120 chr3R:19255400-19255520 1.0000 120 chrX:5988245-5988365 1.0000 120 chr2L:19156100-19156220 1.0000 120 chr2L:7909605-7909725 1.0000 120 chr3L:13107400-13107520 1.0000 120 chr3L:11374101-11374221 1.0000 120 chrX:7537947-7538067 1.0000 120 chr3L:7264195-7264315 1.0000 120 chr2L:21006748-21006868 1.0000 120 chr3L:20990333-20990453 1.0000 120 chr3L:18243354-18243474 1.0000 120 chr2R:21847811-21847931 1.0000 120 chr3L:21934525-21934645 1.0000 120 chr3L:6364402-6364522 1.0000 120 chr3L:13109513-13109633 1.0000 120 chr2R:21543380-21543500 1.0000 120 chr3L:3444345-3444465 1.0000 120 chrX:10581630-10581750 1.0000 120 chr2R:25115639-25115759 1.0000 120 chrX:20166804-20166924 1.0000 120 chr3L:11634701-11634821 1.0000 120 chr2R:6148114-6148234 1.0000 120 chrX:3931779-3931899 1.0000 120 chr2L:18523155-18523275 1.0000 120 chr3R:8939839-8939959 1.0000 120 chrX:12507708-12507828 1.0000 120 chr2L:17421412-17421532 1.0000 120 chr2L:21005628-21005748 1.0000 120 chr3L:2830038-2830158 1.0000 120 chr2L:8919783-8919903 1.0000 120 chr3L:10928850-10928970 1.0000 120 chr2R:18271166-18271286 1.0000 120 chr3R:26496468-26496588 1.0000 120 chrX:2336639-2336759 1.0000 120 chr2R:15740778-15740898 1.0000 120 chr2R:11755358-11755478 1.0000 120 chr2L:16591755-16591875 1.0000 120 chr2L:18122317-18122437 1.0000 120 chr3R:10589094-10589214 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_spab/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/spab.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.335 C 0.168 G 0.166 T 0.332 Background letter frequencies (from file dataset with add-one prior applied): A 0.335 C 0.168 G 0.166 T 0.332 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSGCRGGG MEME-1 width = 8 sites = 15 llr = 150 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::51:2 pos.-specific C :517:::1 probability G 959359a7 matrix T 1::::::: bits 2.6 * 2.3 * * 2.1 * * * 1.8 * ** ** Relative 1.6 **** ** Entropy 1.3 **** ** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCAGGG consensus C GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17439586-17439706 66 1.17e-06 AAAGGGGGCG GCGCGGGG AGGAGCATCC chr3R:30005487-30005607 79 2.35e-06 CCGGCCGGCG GGGCAGGG ACCGGTTTCC chr3R:30357222-30357342 78 2.35e-06 GAATGGAAGT GGGCAGGG AACACAAGTT chr3L:2835892-2836012 107 4.70e-06 GTGGGGAGCT GCGGGGGG CAAATC chrX:18544882-18545002 99 6.46e-06 ATCCCCAACT GGGCGGGC GAGGaaaaaa chr3R:30285149-30285269 85 8.23e-06 TAGGGAGTGG GCGGAGGG GGCGTGGATG chr2L:16590781-16590901 15 8.23e-06 GGATAACTTA GCGGAGGG TAGGTTGGAA chr2L:3351995-3352115 23 1.18e-05 TGAAATTCTA GGGCAGGC TAAAACTGCT chr2L:21006748-21006868 18 1.66e-05 CTAGATTTTT GGGCAGGA AAAAAGATAG chrX:17488503-17488623 20 1.66e-05 AATGAGTGTG GGGCAGga aaaacgaaaa chr2R:10057965-10058085 83 2.13e-05 AAGAAAAAGA GCGCGAGG AGCTGCAAAA chr3R:30014042-30014162 45 2.25e-05 TCTTCTTTTT GCCCGGGG TACAAAGTAC chr3L:17926622-17926742 19 2.49e-05 CTTAAATTCA GCGGGGGA ATCAATGATT chr3L:8822433-8822553 46 2.72e-05 AGTGTTATTT GGGCAAGG CAAGAACAAT chr3L:3073579-3073699 6 3.08e-05 GGGGT TGGCGGGG TGAAATGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17439586-17439706 1.2e-06 65_[+1]_47 chr3R:30005487-30005607 2.4e-06 78_[+1]_34 chr3R:30357222-30357342 2.4e-06 77_[+1]_35 chr3L:2835892-2836012 4.7e-06 106_[+1]_6 chrX:18544882-18545002 6.5e-06 98_[+1]_14 chr3R:30285149-30285269 8.2e-06 84_[+1]_28 chr2L:16590781-16590901 8.2e-06 14_[+1]_98 chr2L:3351995-3352115 1.2e-05 22_[+1]_90 chr2L:21006748-21006868 1.7e-05 17_[+1]_95 chrX:17488503-17488623 1.7e-05 19_[+1]_93 chr2R:10057965-10058085 2.1e-05 82_[+1]_30 chr3R:30014042-30014162 2.3e-05 44_[+1]_68 chr3L:17926622-17926742 2.5e-05 18_[+1]_94 chr3L:8822433-8822553 2.7e-05 45_[+1]_67 chr3L:3073579-3073699 3.1e-05 5_[+1]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGCRGGG width=8 seqs=15 chr2R:17439586-17439706 ( 66) GCGCGGGG 1 chr3R:30005487-30005607 ( 79) GGGCAGGG 1 chr3R:30357222-30357342 ( 78) GGGCAGGG 1 chr3L:2835892-2836012 ( 107) GCGGGGGG 1 chrX:18544882-18545002 ( 99) GGGCGGGC 1 chr3R:30285149-30285269 ( 85) GCGGAGGG 1 chr2L:16590781-16590901 ( 15) GCGGAGGG 1 chr2L:3351995-3352115 ( 23) GGGCAGGC 1 chr2L:21006748-21006868 ( 18) GGGCAGGA 1 chrX:17488503-17488623 ( 20) GGGCAGGA 1 chr2R:10057965-10058085 ( 83) GCGCGAGG 1 chr3R:30014042-30014162 ( 45) GCCCGGGG 1 chr3L:17926622-17926742 ( 19) GCGGGGGA 1 chr3L:8822433-8822553 ( 46) GGGCAAGG 1 chr3L:3073579-3073699 ( 6) TGGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 2.4e+002 -1055 -1055 249 -231 -1055 147 168 -1055 -1055 -133 249 -1055 -1055 213 68 -1055 67 -1055 149 -1055 -133 -1055 238 -1055 -1055 -1055 259 -1055 -74 -33 200 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.4e+002 0.000000 0.000000 0.933333 0.066667 0.000000 0.466667 0.533333 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.733333 0.266667 0.000000 0.533333 0.000000 0.466667 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.133333 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRGGG MEME-1 regular expression -------------------------------------------------------------------------------- G[GC]G[CG][AG]GG[GA] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCAGCA MEME-2 width = 8 sites = 8 llr = 90 E-value = 7.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::6::a pos.-specific C a:1a1:a: probability G ::9:3a:: matrix T :::::::: bits 2.6 * * ** 2.3 * * ** 2.1 * ** ** 1.8 * ** ** Relative 1.6 **** *** Entropy 1.3 **** *** (16.2 bits) 1.0 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCAGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28914203-28914323 98 4.91e-06 CGCGCTCGAC CAGCAGCA ATTTTATTGT chr2L:13545893-13546013 7 4.91e-06 cagcaa cagcagca acaaaaaaca chr3L:7135017-7135137 2 4.91e-06 g cagcagca acaaccacaa chr2R:17266170-17266290 5 4.91e-06 tcgc cagcagca acaacaacaa chr3R:10589094-10589214 27 7.35e-06 TTGTTTTTAG CAGCGGCA ACAAATATGC chr3L:8360437-8360557 51 7.35e-06 AAAAACAAAA CAGCGGCA GACAAATAAA chrX:18544882-18545002 34 9.81e-06 TACAGTGACA CAGCCGCA GAAGCAGAAA chr3L:4336719-4336839 50 1.48e-05 TATGCAAATC CACCAGCA ATTACTTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28914203-28914323 4.9e-06 97_[+2]_15 chr2L:13545893-13546013 4.9e-06 6_[+2]_106 chr3L:7135017-7135137 4.9e-06 1_[+2]_111 chr2R:17266170-17266290 4.9e-06 4_[+2]_108 chr3R:10589094-10589214 7.3e-06 26_[+2]_86 chr3L:8360437-8360557 7.3e-06 50_[+2]_62 chrX:18544882-18545002 9.8e-06 33_[+2]_79 chr3L:4336719-4336839 1.5e-05 49_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCAGCA width=8 seqs=8 chr3R:28914203-28914323 ( 98) CAGCAGCA 1 chr2L:13545893-13546013 ( 7) CAGCAGCA 1 chr3L:7135017-7135137 ( 2) CAGCAGCA 1 chr2R:17266170-17266290 ( 5) CAGCAGCA 1 chr3R:10589094-10589214 ( 27) CAGCGGCA 1 chr3L:8360437-8360557 ( 51) CAGCGGCA 1 chrX:18544882-18545002 ( 34) CAGCCGCA 1 chr3L:4336719-4336839 ( 50) CACCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 7.4e+003 -965 257 -965 -965 158 -965 -965 -965 -965 -42 240 -965 -965 257 -965 -965 90 -42 59 -965 -965 -965 259 -965 -965 257 -965 -965 158 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.4e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.125000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-2 regular expression -------------------------------------------------------------------------------- CAGC[AG]GCA -------------------------------------------------------------------------------- Time 13.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGMGCGA MEME-3 width = 8 sites = 15 llr = 149 E-value = 9.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:5:::a pos.-specific C a1151a1: probability G ::9:9:9: matrix T :6:::::: bits 2.6 * * 2.3 * * 2.1 * * *** 1.8 * * *** Relative 1.6 * * **** Entropy 1.3 * * **** (14.3 bits) 1.0 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGCGCGA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18271166-18271286 22 2.41e-06 AAACTATGCA CTGCGCGA AATTAGTGGT chr2L:17421412-17421532 43 2.41e-06 TACGAAAACA CTGCGCGA AAAAAAAGGA chr3L:12099649-12099769 8 4.85e-06 AGAAGAA CAGCGCGA CTTTCCTCAC chr2R:15664671-15664791 58 4.85e-06 aCCCAACGAG CAGCGCGA ACAAATAAAA chrX:5988245-5988365 58 9.66e-06 TGCATCTACA CTGAGCGA AACGCTCGAC chr2L:4361556-4361676 51 9.66e-06 TTCTTTTGCA CTGAGCGA AAGTAGTAGC chr3L:20582463-20582583 15 9.66e-06 ATGGGGAATA CTGAGCGA TAAATAGAGA chr2R:18760690-18760810 41 1.45e-05 GTAGGGGAAG CAGAGCGA AAGTATAAAG chrX:8592789-8592909 45 1.57e-05 gtcgctgctg CCGCGCGA AGCATAAAAA chr2R:15046098-15046218 50 2.31e-05 TCTGCAGACC CTCCGCGA TAATTGGCAA chr3L:21934525-21934645 75 3.29e-05 CGGACCGACA CACCGCGA CATAATCTCC chr2R:18567339-18567459 38 3.29e-05 AGGAGCTGGA CAGCCCGA CGTCCAGACA chr2R:10057965-10058085 33 4.75e-05 TTTGTTTCAT CTGACCGA CGAACGAACG chr2R:15047002-15047122 37 4.75e-05 GCAGGATGTT CTGAGCCA AATAATGGTA chr3R:26004522-26004642 92 4.75e-05 GACCACAATG CTGAGCCA TTGACAGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18271166-18271286 2.4e-06 21_[+3]_91 chr2L:17421412-17421532 2.4e-06 42_[+3]_70 chr3L:12099649-12099769 4.8e-06 7_[+3]_105 chr2R:15664671-15664791 4.8e-06 57_[+3]_55 chrX:5988245-5988365 9.7e-06 57_[+3]_55 chr2L:4361556-4361676 9.7e-06 50_[+3]_62 chr3L:20582463-20582583 9.7e-06 14_[+3]_98 chr2R:18760690-18760810 1.5e-05 40_[+3]_72 chrX:8592789-8592909 1.6e-05 44_[+3]_68 chr2R:15046098-15046218 2.3e-05 49_[+3]_63 chr3L:21934525-21934645 3.3e-05 74_[+3]_38 chr2R:18567339-18567459 3.3e-05 37_[+3]_75 chr2R:10057965-10058085 4.7e-05 32_[+3]_80 chr2R:15047002-15047122 4.7e-05 36_[+3]_76 chr3R:26004522-26004642 4.7e-05 91_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGMGCGA width=8 seqs=15 chr2R:18271166-18271286 ( 22) CTGCGCGA 1 chr2L:17421412-17421532 ( 43) CTGCGCGA 1 chr3L:12099649-12099769 ( 8) CAGCGCGA 1 chr2R:15664671-15664791 ( 58) CAGCGCGA 1 chrX:5988245-5988365 ( 58) CTGAGCGA 1 chr2L:4361556-4361676 ( 51) CTGAGCGA 1 chr3L:20582463-20582583 ( 15) CTGAGCGA 1 chr2R:18760690-18760810 ( 41) CAGAGCGA 1 chrX:8592789-8592909 ( 45) CCGCGCGA 1 chr2R:15046098-15046218 ( 50) CTCCGCGA 1 chr3L:21934525-21934645 ( 75) CACCGCGA 1 chr2R:18567339-18567459 ( 38) CAGCCCGA 1 chr2R:10057965-10058085 ( 33) CTGACCGA 1 chr2R:15047002-15047122 ( 37) CTGAGCCA 1 chr3R:26004522-26004642 ( 92) CTGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 9.8e+002 -1055 257 -1055 -1055 -1 -133 -1055 86 -1055 -33 238 -1055 48 167 -1055 -1055 -1055 -33 238 -1055 -1055 257 -1055 -1055 -1055 -33 238 -1055 158 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 9.8e+002 0.000000 1.000000 0.000000 0.000000 0.333333 0.066667 0.000000 0.600000 0.000000 0.133333 0.866667 0.000000 0.466667 0.533333 0.000000 0.000000 0.000000 0.133333 0.866667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.866667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGMGCGA MEME-3 regular expression -------------------------------------------------------------------------------- C[TA]G[CA]GCGA -------------------------------------------------------------------------------- Time 20.00 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGGCG MEME-4 width = 8 sites = 2 llr = 27 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::::::a: probability G :aaaaa:a matrix T :::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGGGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17439586-17439706 58 1.18e-06 cTGCCTACAA AGGGGGCG GCGCGGGGAG chr2R:18760690-18760810 15 1.18e-06 ACGATGTGAA AGGGGGCG AAGGAAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17439586-17439706 1.2e-06 57_[+4]_55 chr2R:18760690-18760810 1.2e-06 14_[+4]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGGCG width=8 seqs=2 chr2R:17439586-17439706 ( 58) AGGGGGCG 1 chr2R:18760690-18760810 ( 15) AGGGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.1e+004 158 -765 -765 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 -765 258 -765 -765 257 -765 -765 -765 -765 258 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 regular expression -------------------------------------------------------------------------------- AGGGGGCG -------------------------------------------------------------------------------- Time 26.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCMGCG MEME-5 width = 8 sites = 5 llr = 59 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C 2:a84:a: probability G 8a::2a:a matrix T :::2:::: bits 2.6 ** *** 2.3 ** *** 2.1 ** *** 1.8 *** *** Relative 1.6 **** *** Entropy 1.3 **** *** (17.1 bits) 1.0 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCCAGCG consensus C TC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10539582-10539702 39 6.05e-07 TTTTTTATCC GGCCCGCG ACTAATATAA chr3L:13497827-13497947 103 2.41e-06 CAATCAACTC GGCCAGCG GGTAATGCGG chr3R:30005487-30005607 71 2.41e-06 GCATTTTTCC GGCCGGCG GGGCAGGGAC chrX:6730783-6730903 85 4.85e-06 TTGACGTTAT CGCCAGCG GATCGGAGAC chr2L:13545893-13546013 87 6.04e-06 TTTTTCAATG GGCTCGCG ACCAAAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10539582-10539702 6e-07 38_[+5]_74 chr3L:13497827-13497947 2.4e-06 102_[+5]_10 chr3R:30005487-30005607 2.4e-06 70_[+5]_42 chrX:6730783-6730903 4.8e-06 84_[+5]_28 chr2L:13545893-13546013 6e-06 86_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCMGCG width=8 seqs=5 chr3R:10539582-10539702 ( 39) GGCCCGCG 1 chr3L:13497827-13497947 ( 103) GGCCAGCG 1 chr3R:30005487-30005607 ( 71) GGCCGGCG 1 chrX:6730783-6730903 ( 85) CGCCAGCG 1 chr2L:13545893-13546013 ( 87) GGCTCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.2e+004 -897 25 227 -897 -897 -897 259 -897 -897 257 -897 -897 -897 225 -897 -73 26 125 27 -897 -897 -897 259 -897 -897 257 -897 -897 -897 -897 259 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+004 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.400000 0.400000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCMGCG MEME-5 regular expression -------------------------------------------------------------------------------- [GC]GC[CT][ACG]GCG -------------------------------------------------------------------------------- Time 32.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17577047-17577167 8.53e-01 120 chr3L:14145733-14145853 1.00e+00 120 chr3L:6391463-6391583 8.20e-01 120 chr3L:5864000-5864120 9.47e-01 120 chr2R:18746909-18747029 3.30e-01 120 chr3R:18146807-18146927 7.52e-02 120 chr3L:16189750-16189870 2.93e-01 120 chr3L:6447838-6447958 4.38e-01 120 chr3L:15187933-15188053 1.00e+00 120 chr2R:9498842-9498962 9.64e-01 120 chr3R:24953287-24953407 9.70e-01 120 chr3L:13264002-13264122 8.85e-01 120 chr2L:2484288-2484408 6.01e-01 120 chr3L:3106254-3106374 3.86e-01 120 chr2R:8995146-8995266 9.62e-01 120 chr3L:12706613-12706733 7.53e-01 120 chr3L:15005894-15006014 1.00e+00 120 chr3R:26004522-26004642 3.18e-03 91_[+3(4.75e-05)]_21 chr2L:3562474-3562594 4.48e-01 120 chr3R:24970809-24970929 9.81e-01 120 chr3R:29279702-29279822 1.99e-01 120 chr3R:29290961-29291081 1.04e-01 120 chr3R:7953129-7953249 8.68e-01 120 chr2R:15000519-15000639 8.90e-01 120 chr2L:2802713-2802833 1.18e-01 120 chr3L:8860085-8860205 6.60e-01 120 chr3L:17926622-17926742 8.71e-03 18_[+1(2.49e-05)]_94 chr2R:15047002-15047122 1.07e-01 36_[+3(4.75e-05)]_76 chr2R:20580797-20580917 1.44e-01 120 chr3R:25493918-25494038 6.20e-01 120 chr3R:22137115-22137235 9.91e-01 120 chr2R:21224989-21225109 5.49e-01 120 chr3R:9389115-9389235 4.18e-01 120 chr2L:20002187-20002307 4.37e-01 120 chr3R:24004102-24004222 1.06e-01 120 chrX:13879570-13879690 6.66e-01 120 chr3R:30014042-30014162 2.77e-02 44_[+1(2.25e-05)]_68 chr3R:10177047-10177167 9.70e-01 120 chr3L:3073579-3073699 5.05e-04 5_[+1(3.08e-05)]_107 chr2R:15046098-15046218 1.79e-02 49_[+3(2.31e-05)]_63 chr3L:14450653-14450773 6.18e-03 86_[+5(9.39e-05)]_26 chr2R:17266170-17266290 2.01e-03 4_[+2(4.91e-06)]_108 chr3L:13407031-13407151 8.35e-01 120 chr3R:10592947-10593067 3.45e-03 120 chr3L:21602447-21602567 6.70e-02 92_[+2(4.41e-05)]_20 chr3L:14350973-14351093 2.11e-01 120 chr3R:10630134-10630254 9.87e-01 120 chrX:18544882-18545002 2.58e-07 33_[+2(9.81e-06)]_57_[+1(6.46e-06)]_\ 14 chr3R:18469618-18469738 9.69e-01 120 chr2L:5479239-5479359 4.66e-02 120 chr3R:27069364-27069484 2.76e-02 120 chr3L:18080138-18080258 8.75e-01 120 chr3R:30357222-30357342 1.74e-03 77_[+1(2.35e-06)]_35 chr2L:20989636-20989756 8.91e-01 120 chr3R:10533305-10533425 9.12e-01 120 chr3L:16259689-16259809 9.85e-01 120 chr2R:8595963-8596083 9.83e-01 120 chr3R:22455720-22455840 4.04e-01 60_[+1(9.62e-05)]_52 chr2R:15063795-15063915 9.00e-01 120 chr2R:9071811-9071931 4.95e-01 120 chr3L:13227044-13227164 7.85e-01 120 chr3R:14292435-14292555 1.66e-01 120 chr2L:18122039-18122159 2.64e-02 120 chr2R:17499254-17499374 4.29e-01 120 chr3L:4749298-4749418 6.49e-01 120 chr2L:5288426-5288546 1.20e-01 120 chr2R:18215452-18215572 9.68e-01 120 chr3L:4747558-4747678 9.52e-01 120 chr3L:6355198-6355318 4.51e-02 120 chr2R:15825552-15825672 9.76e-01 120 chr2R:18194808-18194928 2.69e-01 120 chr3L:4336719-4336839 7.80e-02 49_[+2(1.48e-05)]_63 chr2R:17831955-17832075 6.68e-01 120 chrX:17332507-17332627 9.80e-01 120 chr2R:18567339-18567459 2.39e-02 37_[+3(3.29e-05)]_75 chr2L:18946271-18946391 9.00e-01 120 chr2R:9714277-9714397 4.09e-03 120 chr3L:16168907-16169027 1.00e+00 120 chr2L:2485467-2485587 7.14e-01 120 chr2L:1459508-1459628 9.96e-01 120 chr3R:13916722-13916842 1.00e+00 120 chr2R:14929659-14929779 1.00e+00 120 chr2R:19617333-19617453 7.13e-01 120 chr3R:10539582-10539702 3.82e-04 38_[+5(6.05e-07)]_74 chrX:19158599-19158719 1.00e+00 120 chr2R:15100634-15100754 9.17e-01 120 chr2R:12767332-12767452 7.47e-01 120 chr2R:18879263-18879383 2.77e-01 120 chr2R:11083851-11083971 1.10e-01 120 chr3R:22184206-22184326 9.79e-01 120 chr3L:20582463-20582583 3.89e-02 14_[+3(9.66e-06)]_98 chr3L:2873182-2873302 4.51e-01 120 chr3L:13178368-13178488 9.98e-01 120 chr2L:16590781-16590901 3.43e-02 14_[+1(8.23e-06)]_98 chr3L:2533192-2533312 9.79e-01 120 chr2L:20916924-20917044 9.97e-01 120 chr3R:14421943-14422063 7.99e-01 120 chr3L:1692963-1693083 5.78e-02 120 chr2R:15664671-15664791 5.29e-04 57_[+3(4.85e-06)]_55 chr2L:5372673-5372793 9.82e-01 120 chr3L:16489942-16490062 1.00e+00 120 chr3L:8822433-8822553 5.29e-02 45_[+1(2.72e-05)]_67 chr3R:29570431-29570551 9.71e-01 120 chrX:6708243-6708363 9.43e-03 120 chr2L:3351995-3352115 9.86e-04 22_[+1(1.18e-05)]_90 chr3R:21634857-21634977 8.71e-01 120 chr3L:10757060-10757180 8.02e-01 120 chr3R:6106924-6107044 2.16e-01 120 chr3R:13215235-13215355 9.28e-01 120 chr2L:4361556-4361676 3.02e-02 50_[+3(9.66e-06)]_62 chr2L:723940-724060 2.01e-01 120 chr3L:10365050-10365170 9.99e-01 120 chr2L:646658-646778 1.00e+00 120 chr3R:29091738-29091858 9.88e-01 120 chr2L:5494094-5494214 6.00e-01 120 chr2R:11551163-11551283 1.00e+00 120 chr3R:30005487-30005607 6.93e-06 70_[+5(2.41e-06)]_[+1(2.35e-06)]_34 chr2R:18760690-18760810 1.07e-05 14_[+4(1.18e-06)]_18_[+3(1.45e-05)]_\ 72 chr3R:15631062-15631182 8.41e-02 120 chr2L:19144267-19144387 4.20e-01 120 chrX:14017563-14017683 9.99e-01 120 chr3R:27179075-27179195 9.97e-01 120 chr2R:17136183-17136303 4.00e-01 120 chr2L:2806385-2806505 4.81e-02 120 chr3R:30285149-30285269 1.55e-05 88_[+4(1.18e-06)]_24 chr3R:14389426-14389546 7.76e-01 120 chr3L:8360437-8360557 4.26e-04 50_[+2(7.35e-06)]_62 chr3L:6371548-6371668 9.85e-01 120 chr3L:15180948-15181068 1.00e+00 120 chr3R:30270742-30270862 1.54e-01 120 chr2L:15388279-15388399 4.27e-01 120 chr2L:19359955-19360075 5.58e-04 72_[+5(4.88e-05)]_40 chr3L:15847752-15847872 4.26e-01 120 chr3R:10589347-10589467 1.49e-01 120 chr2L:1886954-1887074 1.42e-01 120 chr2R:21799436-21799556 6.85e-01 120 chr3L:776351-776471 8.17e-01 120 chr3L:22910063-22910183 4.10e-01 120 chr3R:21826254-21826374 9.32e-01 120 chr3R:6102551-6102671 2.32e-01 120 chr3L:7135017-7135137 2.42e-03 1_[+2(4.91e-06)]_111 chr3R:13716241-13716361 4.48e-01 120 chr2L:5751590-5751710 1.00e+00 120 chr2L:13146396-13146516 1.00e+00 120 chr3R:21653153-21653273 5.59e-01 120 chrX:18929516-18929636 6.32e-01 120 chr2L:15909438-15909558 9.93e-01 120 chr2L:11069641-11069761 9.99e-01 120 chr2R:13468939-13469059 4.79e-03 1_[+2(4.41e-05)]_4_[+2(9.81e-06)]_\ 99 chr3L:7262633-7262753 9.87e-01 120 chr3R:5622157-5622277 3.53e-02 120 chr2L:20956972-20957092 9.99e-01 120 chr2R:11749574-11749694 1.00e+00 120 chrX:18540374-18540494 9.00e-01 120 chr3R:10829881-10830001 9.29e-01 120 chr3R:18998456-18998576 2.45e-01 120 chr3R:6954628-6954748 9.99e-01 120 chr2R:10474698-10474818 1.06e-02 120 chr3L:12099649-12099769 3.13e-03 7_[+3(4.85e-06)]_105 chr3R:30259740-30259860 5.83e-01 120 chr3R:8922984-8923104 9.79e-01 120 chr3L:2835892-2836012 2.14e-04 81_[+1(9.62e-05)]_17_[+1(4.70e-06)]_\ 6 chr3R:17202488-17202608 9.21e-01 120 chr3R:9594333-9594453 6.70e-03 40_[+5(1.44e-05)]_72 chr2R:21883178-21883298 9.97e-01 120 chr3R:7646353-7646473 9.75e-01 120 chr3R:28848095-28848215 9.98e-01 120 chrX:7540875-7540995 8.94e-01 120 chrX:6730783-6730903 1.38e-02 84_[+5(4.85e-06)]_28 chrX:19843006-19843126 9.96e-01 120 chr3L:8881931-8882051 9.55e-01 120 chrX:5301062-5301182 9.85e-01 120 chr3L:21253086-21253206 1.00e+00 120 chr3L:9551291-9551411 8.82e-01 120 chr2L:13545893-13546013 2.98e-06 6_[+2(4.91e-06)]_72_[+5(6.04e-06)]_\ 26 chr2R:17439586-17439706 2.69e-07 57_[+4(1.18e-06)]_[+1(1.17e-06)]_47 chrX:4435077-4435197 1.40e-02 53_[+1(8.90e-05)]_59 chr2L:16590981-16591101 2.43e-01 120 chr3R:21598024-21598144 9.95e-01 120 chr3L:4383254-4383374 1.00e+00 120 chr2R:18566089-18566209 9.95e-01 120 chr2R:10057965-10058085 7.38e-05 32_[+3(4.75e-05)]_42_[+1(2.13e-05)]_\ 30 chrX:17488503-17488623 2.24e-02 19_[+1(1.66e-05)]_93 chrX:8592789-8592909 4.06e-04 44_[+3(1.57e-05)]_68 chr2L:524518-524638 8.50e-03 51_[+4(4.49e-05)]_61 chr3R:30256369-30256489 9.47e-01 120 chr3L:13497827-13497947 5.06e-04 102_[+5(2.41e-06)]_10 chr3R:14673108-14673228 8.76e-01 120 chr3R:24549868-24549988 2.83e-01 120 chrX:14134053-14134173 4.90e-01 120 chr3R:28914203-28914323 1.28e-03 97_[+2(4.91e-06)]_15 chr3R:10455057-10455177 9.86e-01 120 chr3L:21042612-21042732 8.11e-02 120 chr2R:15906093-15906213 1.46e-01 120 chr3L:3338954-3339074 9.80e-01 120 chr3R:5331887-5332007 9.99e-01 120 chr3L:10923034-10923154 9.99e-01 120 chr2R:11033711-11033831 9.03e-01 120 chr3R:20556858-20556978 2.37e-02 120 chr3L:20635725-20635845 9.34e-01 120 chr2R:20065871-20065991 9.82e-01 120 chrX:18273284-18273404 9.83e-01 120 chr3L:20632464-20632584 9.81e-01 120 chr3L:6458830-6458950 1.00e+00 120 chr3R:31963283-31963403 7.10e-01 120 chr3L:6458013-6458133 8.03e-01 120 chr2R:8307883-8308003 9.50e-01 120 chr3L:16174884-16175004 9.66e-01 120 chr3L:8014035-8014155 1.12e-01 120 chr3R:24143909-24144029 2.24e-03 18_[+5(4.88e-05)]_94 chr3R:15596116-15596236 9.99e-01 120 chr3R:19255400-19255520 9.98e-01 120 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