******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/slp2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:19166078-19166198 1.0000 120 chrX:9048614-9048734 1.0000 120 chr2L:6794971-6795091 1.0000 120 chr3L:627841-627961 1.0000 120 chrX:3538938-3539058 1.0000 120 chr2L:3841066-3841186 1.0000 120 chr3R:24598748-24598868 1.0000 120 chr3R:4913230-4913350 1.0000 120 chr3L:1031028-1031148 1.0000 120 chr3R:20833909-20834029 1.0000 120 chr2L:7266053-7266173 1.0000 120 chrX:16105842-16105962 1.0000 120 chr2L:19121203-19121323 1.0000 120 chr3L:20518269-20518389 1.0000 120 chr2R:11134492-11134612 1.0000 120 chrX:9119979-9120099 1.0000 120 chr2R:15919762-15919882 1.0000 120 chr2L:8610986-8611106 1.0000 120 chr2L:3831849-3831969 1.0000 120 chr2L:7155018-7155138 1.0000 120 chr3L:11408901-11409021 1.0000 120 chr2L:4442311-4442431 1.0000 120 chr2R:10013345-10013465 1.0000 120 chr2R:23567392-23567512 1.0000 120 chrX:18405091-18405211 1.0000 120 chrX:5894740-5894860 1.0000 120 chrX:8677550-8677670 1.0000 120 chr2L:12046760-12046880 1.0000 120 chrX:10473671-10473791 1.0000 120 chrX:5671780-5671900 1.0000 120 chrX:8499207-8499327 1.0000 120 chr2L:7149058-7149178 1.0000 120 chr2R:21891710-21891830 1.0000 120 chr3L:908469-908589 1.0000 120 chr2R:11809459-11809579 1.0000 120 chrX:16650560-16650680 1.0000 120 chr3L:19929445-19929565 1.0000 120 chr3L:754788-754908 1.0000 120 chrX:14738563-14738683 1.0000 120 chrX:5086212-5086332 1.0000 120 chrX:4970090-4970210 1.0000 120 chr3L:11433320-11433440 1.0000 120 chrX:18239431-18239551 1.0000 120 chr2L:3843742-3843862 1.0000 120 chr3R:21187998-21188118 1.0000 120 chr2R:21527390-21527510 1.0000 120 chr3R:12451492-12451612 1.0000 120 chr3R:14744532-14744652 1.0000 120 chr2R:21991070-21991190 1.0000 120 chrX:16103550-16103670 1.0000 120 chr2R:19310968-19311088 1.0000 120 chr3R:5065128-5065248 1.0000 120 chr3R:9085435-9085555 1.0000 120 chr2L:1723205-1723325 1.0000 120 chrX:13253155-13253275 1.0000 120 chr2L:5225731-5225851 1.0000 120 chr3L:166618-166738 1.0000 120 chr3R:15425740-15425860 1.0000 120 chr3R:26436749-26436869 1.0000 120 chr2R:10437347-10437467 1.0000 120 chr3L:6978125-6978245 1.0000 120 chrX:12221674-12221794 1.0000 120 chr2R:15034917-15035037 1.0000 120 chr2R:19128003-19128123 1.0000 120 chrX:14622357-14622477 1.0000 120 chr2R:22545918-22546038 1.0000 120 chrX:16458699-16458819 1.0000 120 chr2R:16180983-16181103 1.0000 120 chrX:4581957-4582077 1.0000 120 chr3L:16760460-16760580 1.0000 120 chr3L:11414667-11414787 1.0000 120 chrX:7703112-7703232 1.0000 120 chr2L:3569907-3570027 1.0000 120 chr2L:3776156-3776276 1.0000 120 chr3R:15278137-15278257 1.0000 120 chrX:19371554-19371674 1.0000 120 chr3R:26242603-26242723 1.0000 120 chrX:2136514-2136634 1.0000 120 chr3R:15644900-15645020 1.0000 120 chr2L:8461913-8462033 1.0000 120 chr2L:10321164-10321284 1.0000 120 chrX:14213631-14213751 1.0000 120 chr3R:5076344-5076464 1.0000 120 chr3R:6352005-6352125 1.0000 120 chr3R:21188215-21188335 1.0000 120 chr2L:3598650-3598770 1.0000 120 chr3L:16582871-16582991 1.0000 120 chr3R:7092171-7092291 1.0000 120 chr3R:17231641-17231761 1.0000 120 chr2L:3477338-3477458 1.0000 120 chr2R:17548589-17548709 1.0000 120 chr2R:7699105-7699225 1.0000 120 chr2L:12529096-12529216 1.0000 120 chr2L:1650136-1650256 1.0000 120 chr2L:18505642-18505762 1.0000 120 chrX:5916085-5916205 1.0000 120 chr3R:14098624-14098744 1.0000 120 chr3R:30164173-30164293 1.0000 120 chr3R:13260228-13260348 1.0000 120 chr3L:7862638-7862758 1.0000 120 chr2R:15754461-15754581 1.0000 120 chr3R:19094155-19094275 1.0000 120 chr3R:13469373-13469493 1.0000 120 chr2R:10899124-10899244 1.0000 120 chr2R:7636686-7636806 1.0000 120 chr2L:21619269-21619389 1.0000 120 chr3R:24233982-24234102 1.0000 120 chr2R:15813343-15813463 1.0000 120 chr3L:21821817-21821937 1.0000 120 chr3R:31060343-31060463 1.0000 120 chr3R:17056876-17056996 1.0000 120 chr3L:7861193-7861313 1.0000 120 chr3R:5086622-5086742 1.0000 120 chrX:10825482-10825602 1.0000 120 chrX:9119337-9119457 1.0000 120 chrX:6615577-6615697 1.0000 120 chr3L:721098-721218 1.0000 120 chr2R:5967740-5967860 1.0000 120 chr2L:14161006-14161126 1.0000 120 chr2R:20590597-20590717 1.0000 120 chr3R:30812631-30812751 1.0000 120 chr2R:20319525-20319645 1.0000 120 chr3R:27826345-27826465 1.0000 120 chrX:17176669-17176789 1.0000 120 chrX:6179610-6179730 1.0000 120 chrX:17229909-17230029 1.0000 120 chr2L:12004805-12004925 1.0000 120 chrX:19164957-19165077 1.0000 120 chr2L:4394009-4394129 1.0000 120 chr2L:1158236-1158356 1.0000 120 chr3R:17043186-17043306 1.0000 120 chr3R:19114028-19114148 1.0000 120 chr2R:21011895-21012015 1.0000 120 chr2R:19413283-19413403 1.0000 120 chr2R:10681531-10681651 1.0000 120 chr2R:7939083-7939203 1.0000 120 chr3L:3059363-3059483 1.0000 120 chr3R:18366352-18366472 1.0000 120 chr3L:708099-708219 1.0000 120 chr3R:23387030-23387150 1.0000 120 chr2L:3587451-3587571 1.0000 120 chr3L:12668136-12668256 1.0000 120 chr2L:15254330-15254450 1.0000 120 chr3R:30789575-30789695 1.0000 120 chrX:2536247-2536367 1.0000 120 chrX:10600662-10600782 1.0000 120 chrX:1858974-1859094 1.0000 120 chr3R:25168329-25168449 1.0000 120 chr2R:21909986-21910106 1.0000 120 chrX:618744-618864 1.0000 120 chr2R:25032114-25032234 1.0000 120 chr2L:22169313-22169433 1.0000 120 chr3R:27440727-27440847 1.0000 120 chr4:406941-407061 1.0000 120 chr3R:25490351-25490471 1.0000 120 chr2R:9388700-9388820 1.0000 120 chr3R:19491131-19491251 1.0000 120 chr3R:7037306-7037426 1.0000 120 chr2L:18328842-18328962 1.0000 120 chrX:7710909-7711029 1.0000 120 chr3R:22041854-22041974 1.0000 120 chr2R:15835626-15835746 1.0000 120 chr3R:29690575-29690695 1.0000 120 chr3R:10648888-10649008 1.0000 120 chr3L:16149835-16149955 1.0000 120 chr2R:12547673-12547793 1.0000 120 chrX:17830354-17830474 1.0000 120 chrX:15063826-15063946 1.0000 120 chrX:16610625-16610745 1.0000 120 chrX:6973380-6973500 1.0000 120 chrX:22837526-22837646 1.0000 120 chr3L:16574565-16574685 1.0000 120 chr3L:3875171-3875291 1.0000 120 chrX:12454506-12454626 1.0000 120 chr3R:4846914-4847034 1.0000 120 chr2R:7916601-7916721 1.0000 120 chr3R:16948860-16948980 1.0000 120 chr3L:8395720-8395840 1.0000 120 chrX:1370135-1370255 1.0000 120 chr3L:16571493-16571613 1.0000 120 chr3L:20630795-20630915 1.0000 120 chrX:11715400-11715520 1.0000 120 chr3R:31687910-31688030 1.0000 120 chrX:12699282-12699402 1.0000 120 chr3L:14977898-14978018 1.0000 120 chr2L:6343605-6343725 1.0000 120 chrX:5084923-5085043 1.0000 120 chr2L:14245667-14245787 1.0000 120 chr3L:1376155-1376275 1.0000 120 chr3R:4975270-4975390 1.0000 120 chr3L:3164976-3165096 1.0000 120 chrX:7901804-7901924 1.0000 120 chr2R:20582570-20582690 1.0000 120 chr4:1031001-1031121 1.0000 120 chr3L:18109542-18109662 1.0000 120 chr2L:12351066-12351186 1.0000 120 chr3L:18672380-18672500 1.0000 120 chr3R:22260338-22260458 1.0000 120 chr3R:23028654-23028774 1.0000 120 chr2L:8982689-8982809 1.0000 120 chr2R:24402803-24402923 1.0000 120 chrX:16782256-16782376 1.0000 120 chrX:15319351-15319471 1.0000 120 chr3R:18663666-18663786 1.0000 120 chr2L:5245758-5245878 1.0000 120 chrX:5312181-5312301 1.0000 120 chr2L:8573016-8573136 1.0000 120 chr3L:9028173-9028293 1.0000 120 chr2R:16832848-16832968 1.0000 120 chr3R:16655809-16655929 1.0000 120 chr3L:9461725-9461845 1.0000 120 chrX:9137265-9137385 1.0000 120 chr2L:17583126-17583246 1.0000 120 chr2L:1629718-1629838 1.0000 120 chr2L:13073957-13074077 1.0000 120 chr2L:2494625-2494745 1.0000 120 chr2L:488440-488560 1.0000 120 chr3L:1216587-1216707 1.0000 120 chr3L:12526946-12527066 1.0000 120 chrX:18921098-18921218 1.0000 120 chrX:19009021-19009141 1.0000 120 chr2L:15751143-15751263 1.0000 120 chr3L:699272-699392 1.0000 120 chr3R:21850322-21850442 1.0000 120 chrX:19643281-19643401 1.0000 120 chrX:11137637-11137757 1.0000 120 chrX:20631295-20631415 1.0000 120 chr3R:5060427-5060547 1.0000 120 chr2L:7204279-7204399 1.0000 120 chr3L:13922384-13922504 1.0000 120 chr2L:3472407-3472527 1.0000 120 chr2R:21183190-21183310 1.0000 120 chr3R:27273582-27273702 1.0000 120 chr2R:7490406-7490526 1.0000 120 chrX:10587613-10587733 1.0000 120 chr2L:13666263-13666383 1.0000 120 chr2R:18433794-18433914 1.0000 120 chr2L:20950773-20950893 1.0000 120 chr3R:6818638-6818758 1.0000 120 chr3L:13189327-13189447 1.0000 120 chr3R:5998366-5998486 1.0000 120 chrX:11451170-11451290 1.0000 120 chr3L:15532676-15532796 1.0000 120 chr3R:26888516-26888636 1.0000 120 chrX:19770250-19770370 1.0000 120 chr2R:21709597-21709717 1.0000 120 chr2L:20797543-20797663 1.0000 120 chr3R:22862133-22862253 1.0000 120 chr3R:18399580-18399700 1.0000 120 chr2L:3444882-3445002 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_slp2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/slp2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.186 G 0.183 T 0.315 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.186 G 0.183 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CDGTGCAY MEME-1 width = 8 sites = 25 llr = 231 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4:2::a: pos.-specific C 9::::a:6 probability G 13a:a::: matrix T :3:8:::4 bits 2.4 * ** 2.2 * ** 2.0 * * ** 1.7 * * *** Relative 1.5 * * *** Entropy 1.2 * * **** (13.4 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CAGTGCAC consensus G A T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16782256-16782376 51 3.91e-06 TTTATTTGGT CGGTGCAC TTTTCACTGG chr3L:1376155-1376275 70 3.91e-06 TAGTACTGTT CGGTGCAC CGTTTACTTA chrX:19164957-19165077 109 1.06e-05 TTTTTTTGCT CAGTGCAC TTAA chrX:6179610-6179730 80 1.06e-05 TCTTTTCTCT CAGTGCAC CCTTTCTATC chr2L:3598650-3598770 86 1.06e-05 TTTTTTCGCG CAGTGCAC AATCCCGCCC chr3R:15644900-15645020 91 1.06e-05 CTATTTCTCT CAGTGCAC AGATGGACAG chr2R:25032114-25032234 27 1.74e-05 AGCTTTGTAG CTGTGCAC TGTGCTGCTG chr2R:21011895-21012015 58 1.74e-05 GCTGTTCATT CTGTGCAC TGGTTGTACG chrX:2136514-2136634 23 1.74e-05 GACTAAGCAC CTGTGCAC GCGATCTTAC chr3L:11433320-11433440 80 1.74e-05 CAATGTTTCT CTGTGCAC CACGAGGAGT chrX:4970090-4970210 50 1.74e-05 GTATTGTAAA CTGTGCAC TGCTTGTAAA chrX:10587613-10587733 18 2.40e-05 CCTGTCCGAA CGGTGCAT ACACTATTTC chr2L:5245758-5245878 95 3.93e-05 TAATTTCTCG CAGTGCAT CATTTTCTGC chr2R:20582570-20582690 5 3.93e-05 TTCA CAGTGCAT AAATAAAGCC chrX:12454506-12454626 69 3.93e-05 ATGGCAAAGA CAGTGCAT TTTATTTAAT chr3L:12668136-12668256 69 3.93e-05 TTATTTCTCG CAGTGCAT GTGCGTGTGT chr2R:10899124-10899244 55 3.93e-05 TGTTCAAGTA CGGAGCAC CCTATACGAT chr3L:3164976-3165096 92 5.07e-05 GTGTTTTTCG CTGTGCAT TTCGATGGCA chr3R:31687910-31688030 5 6.82e-05 TGGC CCGTGCAC AGGAAGAAAC chrX:5916085-5916205 54 6.82e-05 CACAAACTTT CTGAGCAC CGCGATCACT chr3L:18672380-18672500 3 7.87e-05 AT CGGAGCAT GTAATTTTTT chr3R:10648888-10649008 21 7.87e-05 TCTGTATGGT GGGTGCAC TGAGAAAAAG chr3L:11414667-11414787 81 7.87e-05 TAAAAGGTTT CGGAGCAT CCTGAAATTT chr2R:21527390-21527510 33 7.87e-05 TGTGAGAAAT CGGAGCAT GGTTGGTATC chr2R:20590597-20590717 63 9.67e-05 AAAGGGTGGG GAGTGCAC TGAAAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16782256-16782376 3.9e-06 50_[+1]_62 chr3L:1376155-1376275 3.9e-06 69_[+1]_43 chrX:19164957-19165077 1.1e-05 108_[+1]_4 chrX:6179610-6179730 1.1e-05 79_[+1]_33 chr2L:3598650-3598770 1.1e-05 85_[+1]_27 chr3R:15644900-15645020 1.1e-05 90_[+1]_22 chr2R:25032114-25032234 1.7e-05 26_[+1]_86 chr2R:21011895-21012015 1.7e-05 57_[+1]_55 chrX:2136514-2136634 1.7e-05 22_[+1]_90 chr3L:11433320-11433440 1.7e-05 79_[+1]_33 chrX:4970090-4970210 1.7e-05 49_[+1]_63 chrX:10587613-10587733 2.4e-05 17_[+1]_95 chr2L:5245758-5245878 3.9e-05 94_[+1]_18 chr2R:20582570-20582690 3.9e-05 4_[+1]_108 chrX:12454506-12454626 3.9e-05 68_[+1]_44 chr3L:12668136-12668256 3.9e-05 68_[+1]_44 chr2R:10899124-10899244 3.9e-05 54_[+1]_58 chr3L:3164976-3165096 5.1e-05 91_[+1]_21 chr3R:31687910-31688030 6.8e-05 4_[+1]_108 chrX:5916085-5916205 6.8e-05 53_[+1]_59 chr3L:18672380-18672500 7.9e-05 2_[+1]_110 chr3R:10648888-10649008 7.9e-05 20_[+1]_92 chr3L:11414667-11414787 7.9e-05 80_[+1]_32 chr2R:21527390-21527510 7.9e-05 32_[+1]_80 chr2R:20590597-20590717 9.7e-05 62_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CDGTGCAY width=8 seqs=25 chrX:16782256-16782376 ( 51) CGGTGCAC 1 chr3L:1376155-1376275 ( 70) CGGTGCAC 1 chrX:19164957-19165077 ( 109) CAGTGCAC 1 chrX:6179610-6179730 ( 80) CAGTGCAC 1 chr2L:3598650-3598770 ( 86) CAGTGCAC 1 chr3R:15644900-15645020 ( 91) CAGTGCAC 1 chr2R:25032114-25032234 ( 27) CTGTGCAC 1 chr2R:21011895-21012015 ( 58) CTGTGCAC 1 chrX:2136514-2136634 ( 23) CTGTGCAC 1 chr3L:11433320-11433440 ( 80) CTGTGCAC 1 chrX:4970090-4970210 ( 50) CTGTGCAC 1 chrX:10587613-10587733 ( 18) CGGTGCAT 1 chr2L:5245758-5245878 ( 95) CAGTGCAT 1 chr2R:20582570-20582690 ( 5) CAGTGCAT 1 chrX:12454506-12454626 ( 69) CAGTGCAT 1 chr3L:12668136-12668256 ( 69) CAGTGCAT 1 chr2R:10899124-10899244 ( 55) CGGAGCAC 1 chr3L:3164976-3165096 ( 92) CTGTGCAT 1 chr3R:31687910-31688030 ( 5) CCGTGCAC 1 chrX:5916085-5916205 ( 54) CTGAGCAC 1 chr3L:18672380-18672500 ( 3) CGGAGCAT 1 chr3R:10648888-10649008 ( 21) GGGTGCAC 1 chr3L:11414667-11414787 ( 81) CGGAGCAT 1 chr2R:21527390-21527510 ( 33) CGGAGCAT 1 chr2R:20590597-20590717 ( 63) GAGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 1.0e+000 -1129 231 -120 -1129 19 -221 80 -17 -1129 -1129 245 -1129 -66 -1129 -1129 134 -1129 -1129 245 -1129 -1129 243 -1129 -1129 166 -1129 -1129 -1129 -1129 178 -1129 19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.0e+000 0.000000 0.920000 0.080000 0.000000 0.360000 0.040000 0.320000 0.280000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.640000 0.000000 0.360000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CDGTGCAY MEME-1 regular expression -------------------------------------------------------------------------------- C[AGT]G[TA]GCA[CT] -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGCA MEME-2 width = 8 sites = 10 llr = 105 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::9 pos.-specific C 11:8::9: probability G 99a:8a11 matrix T :::22::: bits 2.4 * * 2.2 * * 2.0 *** ** 1.7 *** ** Relative 1.5 ******* Entropy 1.2 ******** (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGCA consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7636686-7636806 37 2.24e-06 TGGGCGATTT GGGCGGCA AAACGCCTGT chrX:18239431-18239551 41 2.24e-06 GCATACTTTA GGGCGGCA AGTGCTGGCT chrX:9119979-9120099 22 3.54e-06 GGGGCCAAAA GGGCGGCG AATCTGATGC chr2R:7939083-7939203 44 1.12e-05 CGGAATATTA GGGCTGCA TGCCTGGCAG chr2L:1158236-1158356 14 1.12e-05 ACCCTTATGT GGGTGGCA GAATACTAAA chr2R:17548589-17548709 108 1.12e-05 GTTTGCACCA GGGCTGCA AGATC chrX:10473671-10473791 14 1.12e-05 CTAATTCCGG GGGTGGCA GTCGCCTGGC chr2R:21709597-21709717 62 1.79e-05 GCTTTTCTTC CGGCGGCA CAGTGAACGC chr3R:17231641-17231761 75 1.79e-05 CGAGTCCGAG GCGCGGCA AGCTTAAGTT chr2R:15034917-15035037 6 1.79e-05 AAGCT GGGCGGGA ATTATCTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7636686-7636806 2.2e-06 36_[+2]_76 chrX:18239431-18239551 2.2e-06 40_[+2]_72 chrX:9119979-9120099 3.5e-06 21_[+2]_91 chr2R:7939083-7939203 1.1e-05 43_[+2]_69 chr2L:1158236-1158356 1.1e-05 13_[+2]_99 chr2R:17548589-17548709 1.1e-05 107_[+2]_5 chrX:10473671-10473791 1.1e-05 13_[+2]_99 chr2R:21709597-21709717 1.8e-05 61_[+2]_51 chr3R:17231641-17231761 1.8e-05 74_[+2]_38 chr2R:15034917-15035037 1.8e-05 5_[+2]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGCA width=8 seqs=10 chr2R:7636686-7636806 ( 37) GGGCGGCA 1 chrX:18239431-18239551 ( 41) GGGCGGCA 1 chrX:9119979-9120099 ( 22) GGGCGGCG 1 chr2R:7939083-7939203 ( 44) GGGCTGCA 1 chr2L:1158236-1158356 ( 14) GGGTGGCA 1 chr2R:17548589-17548709 ( 108) GGGCTGCA 1 chrX:10473671-10473791 ( 14) GGGTGGCA 1 chr2R:21709597-21709717 ( 62) CGGCGGCA 1 chr3R:17231641-17231761 ( 75) GCGCGGCA 1 chr2R:15034917-15035037 ( 6) GGGCGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 2.3e+003 -997 -89 229 -997 -997 -89 229 -997 -997 -997 245 -997 -997 210 -997 -66 -997 -997 212 -66 -997 -997 245 -997 -997 227 -87 -997 151 -997 -87 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.3e+003 0.000000 0.100000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.900000 0.000000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGCA MEME-2 regular expression -------------------------------------------------------------------------------- GGG[CT][GT]GCA -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAGCDV MEME-3 width = 8 sites = 25 llr = 225 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a::43 pos.-specific C :8a:3a13 probability G a2::7:34 matrix T ::::::2: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 **** * Relative 1.5 ****** Entropy 1.2 ****** (13.0 bits) 1.0 ****** 0.7 ****** * 0.5 ****** * 0.2 ****** * 0.0 -------- Multilevel GCCAGCAG consensus G C GA sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25490351-25490471 38 2.27e-06 CTATTTACAC GCCAGCGG GGTAGCATGG chr2R:10681531-10681651 67 6.19e-06 TCTGAGTGTA GCCAGCAG GGTGGTTGTT chr3R:6352005-6352125 18 6.19e-06 AGTCTCCGTC GCCAGCAG TTATGCGTGG chr2R:15034917-15035037 103 6.19e-06 CGCATTATTC GCCAGCAG GTTATTATAC chrX:11715400-11715520 95 2.26e-05 TGTGCCAGTT GCCAGCGA CAGCGGCGTC chrX:2136514-2136634 99 2.26e-05 TGCCTACGTC GCCAGCGA CGATTCGCCA chr2R:19413283-19413403 47 2.49e-05 CATCATCGTC GCCACCGG CGCGTCAGCG chr2L:3444882-3445002 1 3.56e-05 . GCCAGCAA AGAATCCTAC chr3L:12526946-12527066 91 3.56e-05 TTTCAATTCT GCCAGCTC CATTAACATT chr2R:7939083-7939203 66 3.56e-05 TGGCAGGGTT GCCAGCTC ACTGCAGTTC chrX:9119979-9120099 107 3.56e-05 GACAAGTTTT GCCAGCAA TGATAA chr3L:18672380-18672500 103 4.42e-05 CGAAAAATCT GCCAGCCC CGAGAACTTA chrX:7901804-7901924 30 4.42e-05 CTATCGAAAA GCCAGCCC TGCGACGTTG chr3R:17056876-17056996 77 4.42e-05 TTCCTTGCCT GCCACCAG GGGCGTAGTC chr2L:6343605-6343725 72 5.04e-05 GCTTTTGACT GGCAGCAG TCGCACGGAA chrX:14213631-14213751 101 5.71e-05 TCGTAACTTT GCCAGCTA TTACTGTTTC chr3R:27273582-27273702 112 7.14e-05 ACTAAACAAC GGCAGCGC C chrX:19643281-19643401 31 7.14e-05 TGGCATCCCT GCCACCAC TGACAGCTCG chr2R:16832848-16832968 90 7.14e-05 TCCAGCGAGT GCCACCTG GCAAACAACC chr2R:15835626-15835746 106 7.14e-05 TTAAGAATGA GCCACCTG ATTTGAA chr3R:14098624-14098744 84 7.14e-05 TGCAGTCAAC GCCACCTG TTGGCAGCTT chr3R:16948860-16948980 56 7.77e-05 CTTTTTAATT GCCACCGA TGAATCAGCG chr2R:11134492-11134612 97 8.55e-05 AAAACAATCT GGCAGCAC TTGGCTTTTT chr3L:20518269-20518389 113 8.78e-05 TGATAAAGTG GGCAGCCG chr2L:12529096-12529216 22 1.03e-04 AACAAAAAAT GGCAGCGA CAGAGAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25490351-25490471 2.3e-06 37_[+3]_75 chr2R:10681531-10681651 6.2e-06 66_[+3]_46 chr3R:6352005-6352125 6.2e-06 17_[+3]_95 chr2R:15034917-15035037 6.2e-06 102_[+3]_10 chrX:11715400-11715520 2.3e-05 94_[+3]_18 chrX:2136514-2136634 2.3e-05 98_[+3]_14 chr2R:19413283-19413403 2.5e-05 46_[+3]_66 chr2L:3444882-3445002 3.6e-05 [+3]_112 chr3L:12526946-12527066 3.6e-05 90_[+3]_22 chr2R:7939083-7939203 3.6e-05 65_[+3]_47 chrX:9119979-9120099 3.6e-05 106_[+3]_6 chr3L:18672380-18672500 4.4e-05 102_[+3]_10 chrX:7901804-7901924 4.4e-05 29_[+3]_83 chr3R:17056876-17056996 4.4e-05 76_[+3]_36 chr2L:6343605-6343725 5e-05 71_[+3]_41 chrX:14213631-14213751 5.7e-05 100_[+3]_12 chr3R:27273582-27273702 7.1e-05 111_[+3]_1 chrX:19643281-19643401 7.1e-05 30_[+3]_82 chr2R:16832848-16832968 7.1e-05 89_[+3]_23 chr2R:15835626-15835746 7.1e-05 105_[+3]_7 chr3R:14098624-14098744 7.1e-05 83_[+3]_29 chr3R:16948860-16948980 7.8e-05 55_[+3]_57 chr2R:11134492-11134612 8.5e-05 96_[+3]_16 chr3L:20518269-20518389 8.8e-05 112_[+3] chr2L:12529096-12529216 0.0001 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAGCDV width=8 seqs=25 chr3R:25490351-25490471 ( 38) GCCAGCGG 1 chr2R:10681531-10681651 ( 67) GCCAGCAG 1 chr3R:6352005-6352125 ( 18) GCCAGCAG 1 chr2R:15034917-15035037 ( 103) GCCAGCAG 1 chrX:11715400-11715520 ( 95) GCCAGCGA 1 chrX:2136514-2136634 ( 99) GCCAGCGA 1 chr2R:19413283-19413403 ( 47) GCCACCGG 1 chr2L:3444882-3445002 ( 1) GCCAGCAA 1 chr3L:12526946-12527066 ( 91) GCCAGCTC 1 chr2R:7939083-7939203 ( 66) GCCAGCTC 1 chrX:9119979-9120099 ( 107) GCCAGCAA 1 chr3L:18672380-18672500 ( 103) GCCAGCCC 1 chrX:7901804-7901924 ( 30) GCCAGCCC 1 chr3R:17056876-17056996 ( 77) GCCACCAG 1 chr2L:6343605-6343725 ( 72) GGCAGCAG 1 chrX:14213631-14213751 ( 101) GCCAGCTA 1 chr3R:27273582-27273702 ( 112) GGCAGCGC 1 chrX:19643281-19643401 ( 31) GCCACCAC 1 chr2R:16832848-16832968 ( 90) GCCACCTG 1 chr2R:15835626-15835746 ( 106) GCCACCTG 1 chr3R:14098624-14098744 ( 84) GCCACCTG 1 chr3R:16948860-16948980 ( 56) GCCACCGA 1 chr2R:11134492-11134612 ( 97) GGCAGCAC 1 chr3L:20518269-20518389 ( 113) GGCAGCCG 1 chr2L:12529096-12529216 ( 22) GGCAGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 3.3e+002 -1129 -1129 245 -1129 -1129 210 13 -1129 -1129 243 -1129 -1129 166 -1129 -1129 -1129 -1129 59 197 -1129 -1129 243 -1129 -1129 19 -63 61 -39 -17 59 126 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.720000 0.000000 0.000000 1.000000 0.000000 0.000000 0.360000 0.120000 0.280000 0.240000 0.280000 0.280000 0.440000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCDV MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]CA[GC]C[AGT][GAC] -------------------------------------------------------------------------------- Time 20.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGCGC MEME-4 width = 8 sites = 12 llr = 122 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8::::1: pos.-specific C :::::9:a probability G a2:a818: matrix T :1a:3:1: bits 2.4 * * * 2.2 * * * 2.0 * * * * 1.7 * ** * * Relative 1.5 * ****** Entropy 1.2 * ****** (14.7 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATGGCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3472407-3472527 57 3.85e-06 TGCCTGTGCA GATGGCGC CACCATGACG chr3L:12526946-12527066 72 3.85e-06 CTGACCGCCA GATGGCGC GTTTCAATTC chrX:7710909-7711029 104 3.85e-06 TTAATCCATA GATGGCGC CAGATGTTT chr2L:14161006-14161126 33 3.85e-06 CTCACACAGA GATGGCGC CAACACTTAA chrX:18239431-18239551 109 6.09e-06 CAAGCCGCTA GGTGGCGC TATG chr3R:19491131-19491251 95 1.27e-05 AATGCCTATA GATGTCGC TAAAAGCGAT chr4:406941-407061 37 1.27e-05 ACAAATCACA GATGTCGC TTTGATACTG chrX:16782256-16782376 105 1.66e-05 CAAGCAATTT GTTGGCGC GTCGCGTG chrX:10825482-10825602 36 2.04e-05 GCGATTTTGA GATGGGGC TAAACAAGCA chr2R:11134492-11134612 65 2.42e-05 TTCGCCGCTA GGTGTCGC AACAAATGTA chr2L:2494625-2494745 7 3.75e-05 TGTCCT GATGGCTC TCTTCCTTCG chr3L:3164976-3165096 103 3.75e-05 TGTGCATTTC GATGGCAC TTCTATTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3472407-3472527 3.8e-06 56_[+4]_56 chr3L:12526946-12527066 3.8e-06 71_[+4]_41 chrX:7710909-7711029 3.8e-06 103_[+4]_9 chr2L:14161006-14161126 3.8e-06 32_[+4]_80 chrX:18239431-18239551 6.1e-06 108_[+4]_4 chr3R:19491131-19491251 1.3e-05 94_[+4]_18 chr4:406941-407061 1.3e-05 36_[+4]_76 chrX:16782256-16782376 1.7e-05 104_[+4]_8 chrX:10825482-10825602 2e-05 35_[+4]_77 chr2R:11134492-11134612 2.4e-05 64_[+4]_48 chr2L:2494625-2494745 3.7e-05 6_[+4]_106 chr3L:3164976-3165096 3.7e-05 102_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGCGC width=8 seqs=12 chr2L:3472407-3472527 ( 57) GATGGCGC 1 chr3L:12526946-12527066 ( 72) GATGGCGC 1 chrX:7710909-7711029 ( 104) GATGGCGC 1 chr2L:14161006-14161126 ( 33) GATGGCGC 1 chrX:18239431-18239551 ( 109) GGTGGCGC 1 chr3R:19491131-19491251 ( 95) GATGTCGC 1 chr4:406941-407061 ( 37) GATGTCGC 1 chrX:16782256-16782376 ( 105) GTTGGCGC 1 chrX:10825482-10825602 ( 36) GATGGGGC 1 chr2R:11134492-11134612 ( 65) GGTGTCGC 1 chr2L:2494625-2494745 ( 7) GATGGCTC 1 chr3L:3164976-3165096 ( 103) GATGGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 1.6e+004 -1023 -1023 245 -1023 125 -1023 -14 -192 -1023 -1023 -1023 166 -1023 -1023 245 -1023 -1023 -1023 203 -34 -1023 230 -114 -1023 -192 -1023 218 -192 -1023 243 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.166667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.916667 0.083333 0.000000 0.083333 0.000000 0.833333 0.083333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- GATG[GT]CGC -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCGRCG MEME-5 width = 8 sites = 7 llr = 79 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::4:: pos.-specific C a::7::a: probability G ::a:a6:a matrix T :::3:::: bits 2.4 * * * ** 2.2 * * * ** 2.0 * * * ** 1.7 *** * ** Relative 1.5 *** * ** Entropy 1.2 ******** (16.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGGCG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11715400-11715520 103 2.27e-06 TTGCCAGCGA CAGCGGCG TCGTGTCATT chr3R:16948860-16948980 69 2.27e-06 ACCGATGAAT CAGCGGCG AAATGTCAAA chrX:22837526-22837646 67 6.19e-06 ATTACAAGAT CAGCGACG ACCGTCGGCC chr3R:7037306-7037426 65 6.19e-06 GCCATCATGG CAGCGACG TTGGCCGCGA chr2R:19413283-19413403 28 6.19e-06 GCTAATGCCA CAGCGACG CCATCATCGT chrX:16458699-16458819 96 1.00e-05 GTTGGGCATA CAGTGGCG GTGCAAATAT chr2L:5225731-5225851 46 1.00e-05 ATATTTCGAA CAGTGGCG AACCAAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11715400-11715520 2.3e-06 102_[+5]_10 chr3R:16948860-16948980 2.3e-06 68_[+5]_44 chrX:22837526-22837646 6.2e-06 66_[+5]_46 chr3R:7037306-7037426 6.2e-06 64_[+5]_48 chr2R:19413283-19413403 6.2e-06 27_[+5]_85 chrX:16458699-16458819 1e-05 95_[+5]_17 chr2L:5225731-5225851 1e-05 45_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGRCG width=8 seqs=7 chrX:11715400-11715520 ( 103) CAGCGGCG 1 chr3R:16948860-16948980 ( 69) CAGCGGCG 1 chrX:22837526-22837646 ( 67) CAGCGACG 1 chr3R:7037306-7037426 ( 65) CAGCGACG 1 chr2R:19413283-19413403 ( 28) CAGCGACG 1 chrX:16458699-16458819 ( 96) CAGTGGCG 1 chr2L:5225731-5225851 ( 46) CAGTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 2.5e+004 -945 243 -945 -945 166 -945 -945 -945 -945 -945 245 -945 -945 194 -945 -14 -945 -945 245 -945 44 -945 164 -945 -945 243 -945 -945 -945 -945 245 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.5e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGRCG MEME-5 regular expression -------------------------------------------------------------------------------- CAG[CT]G[GA]CG -------------------------------------------------------------------------------- Time 32.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19166078-19166198 6.53e-02 120 chrX:9048614-9048734 1.86e-01 120 chr2L:6794971-6795091 3.37e-01 120 chr3L:627841-627961 9.99e-01 120 chrX:3538938-3539058 6.35e-01 120 chr2L:3841066-3841186 8.48e-01 120 chr3R:24598748-24598868 3.54e-02 74_[+5(8.42e-05)]_38 chr3R:4913230-4913350 5.92e-02 120 chr3L:1031028-1031148 5.81e-01 120 chr3R:20833909-20834029 9.46e-01 120 chr2L:7266053-7266173 9.98e-01 120 chrX:16105842-16105962 1.25e-01 120 chr2L:19121203-19121323 9.59e-01 120 chr3L:20518269-20518389 1.83e-01 112_[+3(8.78e-05)] chr2R:11134492-11134612 3.26e-03 64_[+4(2.42e-05)]_24_[+3(8.55e-05)]_\ 16 chrX:9119979-9120099 8.41e-05 21_[+2(3.54e-06)]_77_[+3(3.56e-05)]_\ 6 chr2R:15919762-15919882 9.25e-01 120 chr2L:8610986-8611106 9.34e-01 120 chr2L:3831849-3831969 7.67e-01 120 chr2L:7155018-7155138 9.99e-01 120 chr3L:11408901-11409021 9.13e-01 120 chr2L:4442311-4442431 6.93e-01 120 chr2R:10013345-10013465 8.16e-01 120 chr2R:23567392-23567512 3.49e-02 120 chrX:18405091-18405211 4.13e-01 120 chrX:5894740-5894860 7.35e-01 120 chrX:8677550-8677670 9.97e-01 120 chr2L:12046760-12046880 3.58e-01 120 chrX:10473671-10473791 2.71e-03 13_[+2(1.12e-05)]_99 chrX:5671780-5671900 2.98e-01 120 chrX:8499207-8499327 5.89e-01 120 chr2L:7149058-7149178 6.12e-01 120 chr2R:21891710-21891830 7.59e-02 120 chr3L:908469-908589 5.46e-01 120 chr2R:11809459-11809579 9.57e-01 120 chrX:16650560-16650680 6.03e-01 120 chr3L:19929445-19929565 9.29e-01 120 chr3L:754788-754908 2.26e-01 120 chrX:14738563-14738683 8.32e-01 120 chrX:5086212-5086332 9.32e-01 120 chrX:4970090-4970210 5.88e-02 49_[+1(1.74e-05)]_63 chr3L:11433320-11433440 1.09e-01 79_[+1(1.74e-05)]_33 chrX:18239431-18239551 1.71e-05 40_[+2(2.24e-06)]_60_[+4(6.09e-06)]_\ 4 chr2L:3843742-3843862 1.37e-02 120 chr3R:21187998-21188118 2.27e-01 120 chr2R:21527390-21527510 1.42e-01 32_[+1(7.87e-05)]_80 chr3R:12451492-12451612 7.11e-01 120 chr3R:14744532-14744652 5.15e-02 120 chr2R:21991070-21991190 7.61e-01 120 chrX:16103550-16103670 9.96e-01 120 chr2R:19310968-19311088 9.58e-01 120 chr3R:5065128-5065248 3.94e-01 120 chr3R:9085435-9085555 9.48e-01 120 chr2L:1723205-1723325 5.83e-02 120 chrX:13253155-13253275 1.46e-01 120 chr2L:5225731-5225851 1.70e-02 45_[+5(1.00e-05)]_67 chr3L:166618-166738 1.77e-01 22_[+2(2.89e-05)]_90 chr3R:15425740-15425860 9.53e-01 120 chr3R:26436749-26436869 8.93e-01 120 chr2R:10437347-10437467 9.80e-02 120 chr3L:6978125-6978245 4.59e-02 120 chrX:12221674-12221794 1.70e-01 58_[+2(5.58e-05)]_54 chr2R:15034917-15035037 5.10e-04 5_[+2(1.79e-05)]_89_[+3(6.19e-06)]_\ 10 chr2R:19128003-19128123 4.02e-01 120 chrX:14622357-14622477 6.64e-01 120 chr2R:22545918-22546038 6.41e-03 120 chrX:16458699-16458819 4.14e-04 95_[+5(1.00e-05)]_17 chr2R:16180983-16181103 8.90e-01 120 chrX:4581957-4582077 7.79e-01 120 chr3L:16760460-16760580 2.48e-01 120 chr3L:11414667-11414787 3.60e-01 80_[+1(7.87e-05)]_32 chrX:7703112-7703232 1.00e+00 120 chr2L:3569907-3570027 2.44e-01 120 chr2L:3776156-3776276 7.60e-01 120 chr3R:15278137-15278257 8.46e-01 120 chrX:19371554-19371674 9.26e-01 120 chr3R:26242603-26242723 2.66e-01 120 chrX:2136514-2136634 9.97e-06 22_[+1(1.74e-05)]_70_[+5(6.19e-06)]_\ 4_[+3(5.71e-05)] chr3R:15644900-15645020 3.06e-02 90_[+1(1.06e-05)]_22 chr2L:8461913-8462033 6.13e-01 120 chr2L:10321164-10321284 3.07e-01 120 chrX:14213631-14213751 1.57e-03 15_[+2(2.89e-05)]_77_[+3(5.71e-05)]_\ 12 chr3R:5076344-5076464 9.68e-01 120 chr3R:6352005-6352125 8.75e-04 17_[+3(6.19e-06)]_4_[+2(5.58e-05)]_\ 83 chr3R:21188215-21188335 8.43e-01 120 chr2L:3598650-3598770 1.56e-02 85_[+1(1.06e-05)]_12_[+1(3.93e-05)]_\ 7 chr3L:16582871-16582991 8.39e-01 120 chr3R:7092171-7092291 6.51e-01 120 chr3R:17231641-17231761 1.84e-02 74_[+2(1.79e-05)]_38 chr2L:3477338-3477458 5.33e-02 120 chr2R:17548589-17548709 4.96e-03 107_[+2(1.12e-05)]_5 chr2R:7699105-7699225 8.13e-01 120 chr2L:12529096-12529216 4.60e-03 120 chr2L:1650136-1650256 9.95e-01 120 chr2L:18505642-18505762 4.65e-01 120 chrX:5916085-5916205 2.28e-02 53_[+1(6.82e-05)]_59 chr3R:14098624-14098744 2.25e-02 83_[+3(7.14e-05)]_29 chr3R:30164173-30164293 6.01e-01 120 chr3R:13260228-13260348 2.20e-02 120 chr3L:7862638-7862758 2.04e-01 120 chr2R:15754461-15754581 8.52e-01 120 chr3R:19094155-19094275 1.27e-01 120 chr3R:13469373-13469493 8.89e-01 120 chr2R:10899124-10899244 9.96e-03 54_[+1(3.93e-05)]_58 chr2R:7636686-7636806 2.50e-03 36_[+2(2.24e-06)]_76 chr2L:21619269-21619389 5.38e-01 120 chr3R:24233982-24234102 6.18e-02 120 chr2R:15813343-15813463 3.16e-02 120 chr3L:21821817-21821937 9.82e-01 120 chr3R:31060343-31060463 3.19e-01 120 chr3R:17056876-17056996 8.15e-05 22_[+2(3.28e-05)]_51_[+5(3.39e-05)]_\ 31 chr3L:7861193-7861313 9.99e-01 120 chr3R:5086622-5086742 9.03e-01 120 chrX:10825482-10825602 5.71e-02 35_[+4(2.04e-05)]_77 chrX:9119337-9119457 9.45e-01 120 chrX:6615577-6615697 4.98e-01 120 chr3L:721098-721218 8.79e-01 120 chr2R:5967740-5967860 9.03e-02 120 chr2L:14161006-14161126 2.22e-03 32_[+4(3.85e-06)]_80 chr2R:20590597-20590717 7.81e-03 55_[+2(7.98e-05)]_57 chr3R:30812631-30812751 8.94e-01 120 chr2R:20319525-20319645 6.50e-01 120 chr3R:27826345-27826465 7.50e-01 120 chrX:17176669-17176789 6.78e-01 120 chrX:6179610-6179730 5.35e-02 79_[+1(1.06e-05)]_33 chrX:17229909-17230029 9.70e-01 120 chr2L:12004805-12004925 8.66e-02 120 chrX:19164957-19165077 2.35e-02 108_[+1(1.06e-05)]_4 chr2L:4394009-4394129 4.97e-01 120 chr2L:1158236-1158356 3.13e-02 13_[+2(1.12e-05)]_99 chr3R:17043186-17043306 6.13e-01 120 chr3R:19114028-19114148 5.47e-01 120 chr2R:21011895-21012015 2.24e-03 26_[+2(5.58e-05)]_23_[+1(1.74e-05)]_\ 55 chr2R:19413283-19413403 1.87e-04 27_[+5(6.19e-06)]_11_[+3(2.49e-05)]_\ 66 chr2R:10681531-10681651 5.46e-03 66_[+3(6.19e-06)]_46 chr2R:7939083-7939203 1.54e-03 43_[+2(1.12e-05)]_14_[+3(3.56e-05)]_\ 47 chr3L:3059363-3059483 1.98e-01 120 chr3R:18366352-18366472 5.27e-02 120 chr3L:708099-708219 6.90e-03 120 chr3R:23387030-23387150 1.00e+00 120 chr2L:3587451-3587571 9.46e-01 120 chr3L:12668136-12668256 3.65e-02 68_[+1(3.93e-05)]_44 chr2L:15254330-15254450 9.74e-01 120 chr3R:30789575-30789695 3.33e-01 120 chrX:2536247-2536367 1.86e-01 120 chrX:10600662-10600782 2.77e-01 120 chrX:1858974-1859094 4.63e-01 120 chr3R:25168329-25168449 9.59e-01 120 chr2R:21909986-21910106 2.94e-01 120 chrX:618744-618864 5.82e-01 120 chr2R:25032114-25032234 1.36e-02 26_[+1(1.74e-05)]_86 chr2L:22169313-22169433 4.04e-01 120 chr3R:27440727-27440847 9.35e-01 120 chr4:406941-407061 2.31e-02 36_[+4(1.27e-05)]_76 chr3R:25490351-25490471 6.74e-05 37_[+3(2.27e-06)]_75 chr2R:9388700-9388820 7.62e-01 120 chr3R:19491131-19491251 4.17e-03 94_[+4(1.27e-05)]_18 chr3R:7037306-7037426 3.21e-04 64_[+5(6.19e-06)]_4_[+5(9.27e-05)]_\ 1_[+5(8.42e-05)]_[+5(8.42e-05)]_19 chr2L:18328842-18328962 1.09e-01 120 chrX:7710909-7711029 1.60e-03 57_[+4(3.85e-06)]_38_[+4(3.85e-06)]_\ 9 chr3R:22041854-22041974 1.79e-01 120 chr2R:15835626-15835746 3.79e-01 105_[+3(7.14e-05)]_7 chr3R:29690575-29690695 9.80e-01 120 chr3R:10648888-10649008 3.27e-03 20_[+1(7.87e-05)]_92 chr3L:16149835-16149955 5.90e-01 120 chr2R:12547673-12547793 9.44e-01 120 chrX:17830354-17830474 7.11e-01 120 chrX:15063826-15063946 1.03e-02 120 chrX:16610625-16610745 1.94e-01 120 chrX:6973380-6973500 3.28e-01 120 chrX:22837526-22837646 4.88e-02 66_[+5(6.19e-06)]_46 chr3L:16574565-16574685 3.63e-01 120 chr3L:3875171-3875291 7.12e-01 120 chrX:12454506-12454626 2.17e-01 68_[+1(3.93e-05)]_44 chr3R:4846914-4847034 4.76e-01 120 chr2R:7916601-7916721 8.51e-01 120 chr3R:16948860-16948980 3.90e-04 55_[+3(7.77e-05)]_5_[+5(2.27e-06)]_\ 44 chr3L:8395720-8395840 8.73e-01 120 chrX:1370135-1370255 4.99e-01 120 chr3L:16571493-16571613 8.03e-01 120 chr3L:20630795-20630915 8.63e-01 120 chrX:11715400-11715520 1.34e-05 94_[+3(2.26e-05)]_[+5(2.27e-06)]_10 chr3R:31687910-31688030 1.48e-01 4_[+1(6.82e-05)]_108 chrX:12699282-12699402 8.08e-01 120 chr3L:14977898-14978018 5.84e-01 120 chr2L:6343605-6343725 1.11e-02 71_[+3(5.04e-05)]_41 chrX:5084923-5085043 3.88e-01 120 chr2L:14245667-14245787 9.66e-01 120 chr3L:1376155-1376275 3.38e-02 69_[+1(3.91e-06)]_43 chr3R:4975270-4975390 6.74e-01 120 chr3L:3164976-3165096 1.59e-03 91_[+1(5.07e-05)]_3_[+4(3.75e-05)]_\ 10 chrX:7901804-7901924 2.71e-03 29_[+3(4.42e-05)]_83 chr2R:20582570-20582690 1.90e-02 4_[+1(3.93e-05)]_69_[+1(5.75e-05)]_\ 31 chr4:1031001-1031121 9.94e-01 120 chr3L:18109542-18109662 2.36e-01 120 chr2L:12351066-12351186 7.28e-01 120 chr3L:18672380-18672500 1.78e-04 2_[+1(7.87e-05)]_92_[+3(4.42e-05)]_\ 10 chr3R:22260338-22260458 2.27e-01 120 chr3R:23028654-23028774 2.98e-01 120 chr2L:8982689-8982809 9.48e-01 120 chr2R:24402803-24402923 8.06e-01 120 chrX:16782256-16782376 6.22e-05 50_[+1(3.91e-06)]_46_[+4(1.66e-05)]_\ 8 chrX:15319351-15319471 5.26e-03 120 chr3R:18663666-18663786 7.15e-01 120 chr2L:5245758-5245878 6.61e-02 94_[+1(3.93e-05)]_18 chrX:5312181-5312301 8.83e-02 120 chr2L:8573016-8573136 3.20e-01 120 chr3L:9028173-9028293 7.62e-01 120 chr2R:16832848-16832968 1.03e-01 89_[+3(7.14e-05)]_23 chr3R:16655809-16655929 6.61e-01 120 chr3L:9461725-9461845 1.06e-02 120 chrX:9137265-9137385 9.50e-01 120 chr2L:17583126-17583246 9.33e-01 120 chr2L:1629718-1629838 5.79e-01 120 chr2L:13073957-13074077 4.91e-02 120 chr2L:2494625-2494745 3.90e-02 6_[+4(3.75e-05)]_106 chr2L:488440-488560 1.56e-01 120 chr3L:1216587-1216707 1.63e-01 120 chr3L:12526946-12527066 4.86e-04 71_[+4(3.85e-06)]_11_[+3(3.56e-05)]_\ 22 chrX:18921098-18921218 8.98e-01 120 chrX:19009021-19009141 7.87e-01 120 chr2L:15751143-15751263 1.24e-01 120 chr3L:699272-699392 1.81e-01 120 chr3R:21850322-21850442 2.31e-01 120 chrX:19643281-19643401 2.51e-02 30_[+3(7.14e-05)]_82 chrX:11137637-11137757 9.99e-01 120 chrX:20631295-20631415 9.95e-01 120 chr3R:5060427-5060547 3.87e-01 120 chr2L:7204279-7204399 7.44e-02 56_[+5(8.42e-05)]_56 chr3L:13922384-13922504 5.75e-01 120 chr2L:3472407-3472527 2.95e-04 8_[+4(3.85e-06)]_40_[+4(3.85e-06)]_\ 56 chr2R:21183190-21183310 9.25e-01 120 chr3R:27273582-27273702 1.79e-02 111_[+3(7.14e-05)]_1 chr2R:7490406-7490526 5.55e-01 120 chrX:10587613-10587733 6.72e-02 17_[+1(2.40e-05)]_95 chr2L:13666263-13666383 2.97e-01 120 chr2R:18433794-18433914 4.40e-01 120 chr2L:20950773-20950893 7.70e-02 120 chr3R:6818638-6818758 9.97e-01 120 chr3L:13189327-13189447 2.74e-02 120 chr3R:5998366-5998486 7.59e-01 120 chrX:11451170-11451290 9.45e-01 120 chr3L:15532676-15532796 3.68e-02 120 chr3R:26888516-26888636 4.85e-01 120 chrX:19770250-19770370 8.96e-01 120 chr2R:21709597-21709717 4.48e-04 61_[+2(1.79e-05)]_51 chr2L:20797543-20797663 7.91e-01 120 chr3R:22862133-22862253 9.53e-01 120 chr3R:18399580-18399700 3.19e-02 71_[+4(4.74e-05)]_41 chr2L:3444882-3445002 1.16e-01 [+3(3.56e-05)]_112 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************