******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/slou.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:5225673-5225793 1.0000 120 chrX:8178332-8178452 1.0000 120 chrX:114958-115078 1.0000 120 chr2L:17368640-17368760 1.0000 120 chr2L:1048574-1048694 1.0000 120 chr2R:11144957-11145077 1.0000 120 chr2R:8572745-8572865 1.0000 120 chr3L:9695741-9695861 1.0000 120 chr2L:7515504-7515624 1.0000 120 chr2R:7054229-7054349 1.0000 120 chr2L:12548959-12549079 1.0000 120 chr2L:5610224-5610344 1.0000 120 chr3L:5662208-5662328 1.0000 120 chr2R:10681449-10681569 1.0000 120 chr2R:14021852-14021972 1.0000 120 chrX:10741156-10741276 1.0000 120 chr2L:21784933-21785053 1.0000 120 chr2L:5771340-5771460 1.0000 120 chr2L:14619735-14619855 1.0000 120 chr3R:6414907-6415027 1.0000 120 chr3L:10818392-10818512 1.0000 120 chr2R:20994792-20994912 1.0000 120 chr2R:18774932-18775052 1.0000 120 chr2R:10347616-10347736 1.0000 120 chr2R:13043332-13043452 1.0000 120 chr2R:15155127-15155247 1.0000 120 chr2R:14503751-14503871 1.0000 120 chr3L:5630234-5630354 1.0000 120 chr2R:13507178-13507298 1.0000 120 chrX:13023905-13024025 1.0000 120 chr2L:2873387-2873507 1.0000 120 chrX:19107014-19107134 1.0000 120 chr2R:22789371-22789491 1.0000 120 chrX:5866278-5866398 1.0000 120 chrX:18533362-18533482 1.0000 120 chr3R:7500726-7500846 1.0000 120 chr2R:21091971-21092091 1.0000 120 chr3L:21047199-21047319 1.0000 120 chr2L:11628372-11628492 1.0000 120 chr3R:21636950-21637070 1.0000 120 chr3R:24303240-24303360 1.0000 120 chr2L:22924641-22924761 1.0000 120 chr2R:24515307-24515427 1.0000 120 chr2L:12867656-12867776 1.0000 120 chr2R:7139363-7139483 1.0000 120 chr2L:14586789-14586909 1.0000 120 chr2L:1316581-1316701 1.0000 120 chr2R:16344401-16344521 1.0000 120 chr2R:22387662-22387782 1.0000 120 chr3R:8979995-8980115 1.0000 120 chr2R:12102664-12102784 1.0000 120 chr3L:1534248-1534368 1.0000 120 chr2R:13005429-13005549 1.0000 120 chr2R:13453515-13453635 1.0000 120 chrX:4699853-4699973 1.0000 120 chr2L:17588706-17588826 1.0000 120 chrX:3288966-3289086 1.0000 120 chr2R:7879188-7879308 1.0000 120 chrX:6255498-6255618 1.0000 120 chr2L:8610934-8611054 1.0000 120 chrX:2011708-2011828 1.0000 120 chr2L:4726121-4726241 1.0000 120 chr3L:13478747-13478867 1.0000 120 chr4:132096-132216 1.0000 120 chr2R:19311011-19311131 1.0000 120 chr2L:3740602-3740722 1.0000 120 chr3L:7528512-7528632 1.0000 120 chr2L:18776704-18776824 1.0000 120 chr2L:17204002-17204122 1.0000 120 chrX:11715287-11715407 1.0000 120 chr2L:8746443-8746563 1.0000 120 chr3R:16704426-16704546 1.0000 120 chrX:16103555-16103675 1.0000 120 chr2L:13049167-13049287 1.0000 120 chr3R:19011071-19011191 1.0000 120 chr2L:17784757-17784877 1.0000 120 chr3R:5059504-5059624 1.0000 120 chr2L:13876836-13876956 1.0000 120 chr2R:5090462-5090582 1.0000 120 chr3R:27988367-27988487 1.0000 120 chrX:8112858-8112978 1.0000 120 chr2L:4971433-4971553 1.0000 120 chr3R:28545007-28545127 1.0000 120 chr3R:28811943-28812063 1.0000 120 chr2R:13029104-13029224 1.0000 120 chr2L:7890824-7890944 1.0000 120 chr2R:14645112-14645232 1.0000 120 chr2L:11517288-11517408 1.0000 120 chr2L:8365830-8365950 1.0000 120 chr2L:7871908-7872028 1.0000 120 chr3L:5182330-5182450 1.0000 120 chr2L:1650121-1650241 1.0000 120 chr2R:18125807-18125927 1.0000 120 chr3R:22526513-22526633 1.0000 120 chrX:5970559-5970679 1.0000 120 chr3L:11408850-11408970 1.0000 120 chr3L:14999721-14999841 1.0000 120 chr2R:15322332-15322452 1.0000 120 chr2L:2133161-2133281 1.0000 120 chr3L:3760762-3760882 1.0000 120 chr2R:23942358-23942478 1.0000 120 chr2L:10366576-10366696 1.0000 120 chr2R:23818416-23818536 1.0000 120 chr3L:4262549-4262669 1.0000 120 chrX:7703119-7703239 1.0000 120 chr3R:21887656-21887776 1.0000 120 chr2R:20590662-20590782 1.0000 120 chr2L:19019288-19019408 1.0000 120 chr3L:18837989-18838109 1.0000 120 chr3L:13845427-13845547 1.0000 120 chr2L:2192398-2192518 1.0000 120 chr3L:8689838-8689958 1.0000 120 chr3R:15139514-15139634 1.0000 120 chr3L:19216603-19216723 1.0000 120 chr3R:27557139-27557259 1.0000 120 chr2L:22247856-22247976 1.0000 120 chrX:8591881-8592001 1.0000 120 chr2L:9494931-9495051 1.0000 120 chr3L:11286663-11286783 1.0000 120 chr3L:15275697-15275817 1.0000 120 chr3L:9972641-9972761 1.0000 120 chrX:16650574-16650694 1.0000 120 chr2R:10066649-10066769 1.0000 120 chr2R:13261763-13261883 1.0000 120 chr4:660689-660809 1.0000 120 chrX:17293576-17293696 1.0000 120 chr3L:4553540-4553660 1.0000 120 chr3R:17043244-17043364 1.0000 120 chr2L:203681-203801 1.0000 120 chr2L:1614248-1614368 1.0000 120 chr3L:1568721-1568841 1.0000 120 chr3R:28676952-28677072 1.0000 120 chr2L:14160984-14161104 1.0000 120 chr3R:28327252-28327372 1.0000 120 chrX:7162649-7162769 1.0000 120 chr4:359794-359914 1.0000 120 chrX:3538945-3539065 1.0000 120 chrX:5966152-5966272 1.0000 120 chr2L:19930210-19930330 1.0000 120 chr3R:28599580-28599700 1.0000 120 chr2R:22450483-22450603 1.0000 120 chr2L:3477328-3477448 1.0000 120 chr2R:15818622-15818742 1.0000 120 chr2R:17469475-17469595 1.0000 120 chr3L:4413236-4413356 1.0000 120 chrX:15887315-15887435 1.0000 120 chr2L:6797497-6797617 1.0000 120 chr2R:9132145-9132265 1.0000 120 chr2R:17590873-17590993 1.0000 120 chr2R:9388646-9388766 1.0000 120 chr2L:5278531-5278651 1.0000 120 chr2L:13461103-13461223 1.0000 120 chrX:13329686-13329806 1.0000 120 chrX:14169209-14169329 1.0000 120 chr2R:9693594-9693714 1.0000 120 chr2R:15381251-15381371 1.0000 120 chrX:20257319-20257439 1.0000 120 chrX:16580203-16580323 1.0000 120 chr2R:18811998-18812118 1.0000 120 chr2L:12546716-12546836 1.0000 120 chr3R:16769565-16769685 1.0000 120 chr2L:21629350-21629470 1.0000 120 chr2L:1837800-1837920 1.0000 120 chr2R:20326899-20327019 1.0000 120 chr2R:16170846-16170966 1.0000 120 chr2L:10760828-10760948 1.0000 120 chr2L:11091230-11091350 1.0000 120 chr3L:15235262-15235382 1.0000 120 chr3L:3770893-3771013 1.0000 120 chr2L:22536692-22536812 1.0000 120 chrX:8677595-8677715 1.0000 120 chr2R:21508010-21508130 1.0000 120 chrX:9135150-9135270 1.0000 120 chr3L:7782377-7782497 1.0000 120 chr3L:13922424-13922544 1.0000 120 chr2L:15248723-15248843 1.0000 120 chr3R:16099040-16099160 1.0000 120 chr2L:11528434-11528554 1.0000 120 chr2R:10103798-10103918 1.0000 120 chr2L:21619267-21619387 1.0000 120 chr2R:13429225-13429345 1.0000 120 chr2L:16743080-16743200 1.0000 120 chr3L:9614116-9614236 1.0000 120 chr2R:24293534-24293654 1.0000 120 chr3R:27604666-27604786 1.0000 120 chrX:19208190-19208310 1.0000 120 chr3R:13078393-13078513 1.0000 120 chr3L:6264553-6264673 1.0000 120 chr3R:26121225-26121345 1.0000 120 chr2R:9309642-9309762 1.0000 120 chr3R:5861629-5861749 1.0000 120 chr2R:4012772-4012892 1.0000 120 chr3R:16241859-16241979 1.0000 120 chrX:11925356-11925476 1.0000 120 chr3L:16779774-16779894 1.0000 120 chr3L:20771132-20771252 1.0000 120 chr3R:27937952-27938072 1.0000 120 chrX:20506091-20506211 1.0000 120 chr2R:23574939-23575059 1.0000 120 chr2R:1345216-1345336 1.0000 120 chrX:6373081-6373201 1.0000 120 chr2L:21149228-21149348 1.0000 120 chr2L:16647934-16648054 1.0000 120 chr2R:8002263-8002383 1.0000 120 chr2L:4393928-4394048 1.0000 120 chr2R:7077008-7077128 1.0000 120 chr2R:14362948-14363068 1.0000 120 chr2R:8067819-8067939 1.0000 120 chr3R:14741477-14741597 1.0000 120 chr2L:5520013-5520133 1.0000 120 chr2L:1207560-1207680 1.0000 120 chr2L:8602826-8602946 1.0000 120 chrX:17887251-17887371 1.0000 120 chr3R:21612983-21613103 1.0000 120 chrX:5892176-5892296 1.0000 120 chr3L:7861172-7861292 1.0000 120 chrX:9584838-9584958 1.0000 120 chr2R:15147778-15147898 1.0000 120 chr2R:9544881-9545001 1.0000 120 chrX:1859091-1859211 1.0000 120 chr2R:9593953-9594073 1.0000 120 chr2R:16800186-16800306 1.0000 120 chr3R:26172222-26172342 1.0000 120 chrX:6375800-6375920 1.0000 120 chr3L:16853664-16853784 1.0000 120 chr2L:5043926-5044046 1.0000 120 chr3L:13236738-13236858 1.0000 120 chr2R:20316187-20316307 1.0000 120 chr2R:11602087-11602207 1.0000 120 chr2L:5326948-5327068 1.0000 120 chr3L:17791660-17791780 1.0000 120 chr3L:4379048-4379168 1.0000 120 chr2R:11204240-11204360 1.0000 120 chr3R:20948101-20948221 1.0000 120 chrX:19009012-19009132 1.0000 120 chr2L:19517430-19517550 1.0000 120 chrX:11454478-11454598 1.0000 120 chr2R:9988979-9989099 1.0000 120 chr3R:11243969-11244089 1.0000 120 chr3L:8692039-8692159 1.0000 120 chrX:5883532-5883652 1.0000 120 chr2L:13549443-13549563 1.0000 120 chr3R:10675272-10675392 1.0000 120 chr3L:5152455-5152575 1.0000 120 chr2R:12772724-12772844 1.0000 120 chr2R:21535535-21535655 1.0000 120 chr3R:23176530-23176650 1.0000 120 chr3R:18274543-18274663 1.0000 120 chr3L:16165767-16165887 1.0000 120 chr2R:24402662-24402782 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_slou/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/slou.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.17 G 0.168 T 0.332 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.17 G 0.168 T 0.332 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCACC MEME-1 width = 8 sites = 30 llr = 275 E-value = 4.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:9:1 pos.-specific C :8:79:67 probability G a2a2:112 matrix T ::::1:2: bits 2.6 2.3 * * 2.1 * * * 1.8 *** * Relative 1.5 *** * Entropy 1.3 ****** * (13.2 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCACC consensus G G TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20948101-20948221 81 1.32e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr2R:16800186-16800306 34 1.32e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr2L:6797497-6797617 77 1.32e-06 CAACTTTTTA GCGCCACC TGGCTGAATA chr2R:15818622-15818742 72 1.32e-06 CACAAATGCA GCGCCACC TATGCGGGCA chr3R:8979995-8980115 26 1.32e-06 GCAGTAAGTA GCGCCACC ATTGGCCAAA chr3L:6264553-6264673 52 9.81e-06 AGATTTACTG GCGCCATC TAGGGCCTTA chr2L:18776704-18776824 11 9.81e-06 ATATCTGCTG GCGCCATC TGTTGGCCCA chr2R:13453515-13453635 81 9.81e-06 TTACCTGGTG GCGCCATC TAGGAGTCCC chr3R:27937952-27938072 92 1.05e-05 TAAATCATAA GCGCCGCG GGGTGTTCTT chr2L:10760828-10760948 51 1.37e-05 CTCTCTGTGT GGGCCACG TTTGCAGTTT chr2R:18125807-18125927 38 1.82e-05 GCGCGCAGAA GCGCCAGG GCTGCACAAT chr2L:13876836-13876956 81 1.82e-05 ACATTAACTG GCGCCACA AATATTTTTC chr3R:26172222-26172342 112 2.28e-05 AAAACCTGAA GGGGCACC A chr2L:2133161-2133281 41 2.28e-05 GAAAACATTA GCGCCGGC AGTTGAATGA chr2L:7890824-7890944 56 2.28e-05 CAACTGTGGT GCGACACC TAGTGTTCAT chr3L:13236738-13236858 5 2.66e-05 CACT GCGCCATG TGAAATAAAA chrX:20257319-20257439 97 2.66e-05 AGCTAATTAA GCGGCAGC ACTGATTAGC chrX:13329686-13329806 102 2.66e-05 TATCCGTGTT GCGGCAGC CCTGGTCGAC chrX:9584838-9584958 7 3.69e-05 TTAAAT GCGCTACC GACATTAAAT chr2L:14160984-14161104 59 4.15e-05 CACAGAGATG GCGCCAAC ACTTAACTAA chr2L:16743080-16743200 95 4.21e-05 GTAATCTTAT GGGCCGCG CTTTTTGAGG chr2L:16647934-16648054 107 4.79e-05 AACAGGACGT GCGACACG TGCAGA chrX:5883532-5883652 56 5.37e-05 CCGCCAGATG GCGGCACA GCATGAAATA chr3L:9614116-9614236 59 5.37e-05 CCACACTTTT GGGGCGCC ACTAAGGTAA chr2L:11628372-11628492 12 5.95e-05 CATGTACGGT GGGCCACA GTAAGTTGTG chrX:7162649-7162769 43 7.03e-05 TGACCACCAA ACGCCACC TGTTGGCCGG chrX:17887251-17887371 8 9.43e-05 CACAATC GGGGCATC GGTTGCAATA chr3R:13078393-13078513 97 9.43e-05 taAAAGTGGT GCGACATC TAGTGGTTTT chr2R:23818416-23818536 31 9.43e-05 GAATTTCACC GCGCTACG ACTCAGCCGA chr2R:9309642-9309762 3 1.37e-04 AA GCCCCATC ATTAGTTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20948101-20948221 1.3e-06 80_[+1]_32 chr2R:16800186-16800306 1.3e-06 33_[+1]_79 chr2L:6797497-6797617 1.3e-06 76_[+1]_36 chr2R:15818622-15818742 1.3e-06 71_[+1]_41 chr3R:8979995-8980115 1.3e-06 25_[+1]_87 chr3L:6264553-6264673 9.8e-06 51_[+1]_61 chr2L:18776704-18776824 9.8e-06 10_[+1]_102 chr2R:13453515-13453635 9.8e-06 80_[+1]_32 chr3R:27937952-27938072 1e-05 91_[+1]_21 chr2L:10760828-10760948 1.4e-05 50_[+1]_62 chr2R:18125807-18125927 1.8e-05 37_[+1]_75 chr2L:13876836-13876956 1.8e-05 80_[+1]_32 chr3R:26172222-26172342 2.3e-05 111_[+1]_1 chr2L:2133161-2133281 2.3e-05 40_[+1]_72 chr2L:7890824-7890944 2.3e-05 55_[+1]_57 chr3L:13236738-13236858 2.7e-05 4_[+1]_108 chrX:20257319-20257439 2.7e-05 96_[+1]_16 chrX:13329686-13329806 2.7e-05 101_[+1]_11 chrX:9584838-9584958 3.7e-05 6_[+1]_106 chr2L:14160984-14161104 4.1e-05 58_[+1]_54 chr2L:16743080-16743200 4.2e-05 94_[+1]_18 chr2L:16647934-16648054 4.8e-05 106_[+1]_6 chrX:5883532-5883652 5.4e-05 55_[+1]_57 chr3L:9614116-9614236 5.4e-05 58_[+1]_54 chr2L:11628372-11628492 5.9e-05 11_[+1]_101 chrX:7162649-7162769 7e-05 42_[+1]_70 chrX:17887251-17887371 9.4e-05 7_[+1]_105 chr3R:13078393-13078513 9.4e-05 96_[+1]_16 chr2R:23818416-23818536 9.4e-05 30_[+1]_82 chr2R:9309642-9309762 0.00014 2_[+1]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCACC width=8 seqs=30 chr3R:20948101-20948221 ( 81) GCGCCACC 1 chr2R:16800186-16800306 ( 34) GCGCCACC 1 chr2L:6797497-6797617 ( 77) GCGCCACC 1 chr2R:15818622-15818742 ( 72) GCGCCACC 1 chr3R:8979995-8980115 ( 26) GCGCCACC 1 chr3L:6264553-6264673 ( 52) GCGCCATC 1 chr2L:18776704-18776824 ( 11) GCGCCATC 1 chr2R:13453515-13453635 ( 81) GCGCCATC 1 chr3R:27937952-27938072 ( 92) GCGCCGCG 1 chr2L:10760828-10760948 ( 51) GGGCCACG 1 chr2R:18125807-18125927 ( 38) GCGCCAGG 1 chr2L:13876836-13876956 ( 81) GCGCCACA 1 chr3R:26172222-26172342 ( 112) GGGGCACC 1 chr2L:2133161-2133281 ( 41) GCGCCGGC 1 chr2L:7890824-7890944 ( 56) GCGACACC 1 chr3L:13236738-13236858 ( 5) GCGCCATG 1 chrX:20257319-20257439 ( 97) GCGGCAGC 1 chrX:13329686-13329806 ( 102) GCGGCAGC 1 chrX:9584838-9584958 ( 7) GCGCTACC 1 chr2L:14160984-14161104 ( 59) GCGCCAAC 1 chr2L:16743080-16743200 ( 95) GGGCCGCG 1 chr2L:16647934-16648054 ( 107) GCGACACG 1 chrX:5883532-5883652 ( 56) GCGGCACA 1 chr3L:9614116-9614236 ( 59) GGGGCGCC 1 chr2L:11628372-11628492 ( 12) GGGCCACA 1 chrX:7162649-7162769 ( 43) ACGCCACC 1 chrX:17887251-17887371 ( 8) GGGGCATC 1 chr3R:13078393-13078513 ( 97) GCGACATC 1 chr2R:23818416-23818536 ( 31) GCGCTACG 1 chr2R:9309642-9309762 ( 3) GCCCCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 4.3e-004 -330 -1155 253 -1155 -1155 223 25 -1155 -1155 -235 253 -1155 -172 204 25 -1155 -1155 245 -1155 -231 139 -1155 -33 -1155 -330 182 -33 -51 -172 197 48 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 4.3e-004 0.033333 0.000000 0.966667 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.033333 0.966667 0.000000 0.100000 0.700000 0.200000 0.000000 0.000000 0.933333 0.000000 0.066667 0.866667 0.000000 0.133333 0.000000 0.033333 0.600000 0.133333 0.233333 0.100000 0.666667 0.233333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 regular expression -------------------------------------------------------------------------------- G[CG]G[CG]CA[CT][CG] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GKTGSCRC MEME-2 width = 8 sites = 27 llr = 243 E-value = 9.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1::::5: pos.-specific C :2::5a17 probability G a21a5:43 matrix T :49::::: bits 2.6 * * * 2.3 * * * 2.1 * * * 1.8 * * * * Relative 1.5 * *** * Entropy 1.3 * *** * (13.0 bits) 1.0 * **** * 0.8 * ****** 0.5 * ****** 0.3 * ****** 0.0 -------- Multilevel GTTGGCAC consensus G C GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21535535-21535655 68 3.82e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr2R:16800186-16800306 105 3.82e-06 ATTTCGTATA GGTGGCGC CACTTAAA chr2L:17784757-17784877 43 3.82e-06 ATGACACATA GGTGGCGC TGAAGCCAAT chrX:3288966-3289086 45 3.82e-06 AGTCACTTGT GTTGGCGC CTCTTATCAG chrX:19208190-19208310 33 1.03e-05 GTTGGGTCTG GCTGCCGC ATCATAGCAG chr2L:5278531-5278651 36 1.78e-05 TTGCATCGGA GGTGGCAC TATCGTGGAC chr2R:9988979-9989099 94 2.54e-05 TTCCTTTAGC GTTGCCAC TTCAATTTCT chr2L:21619267-21619387 5 2.54e-05 tcat gttgccac gcccactcta chr2L:1614248-1614368 7 2.54e-05 CTCAGA GTTGCCAC TACGATTGCT chr2R:18774932-18775052 26 2.54e-05 AGATTCTACA GTTGCCAC AAAACAGTTG chr3L:13236738-13236858 109 3.43e-05 GGCTGGGGGC GGTGGCGG GGGG chr2R:15147778-15147898 103 3.81e-05 GCTCGCTGGA GTTGCCGG ACTGCTGCAA chr2L:16743080-16743200 70 4.58e-05 CTAGCCAGCA GATGGCGC TGGTGAAGTA chrX:13329686-13329806 22 4.58e-05 ATAGTTGATA GATGGCGC TTTAAGCACT chrX:15887315-15887435 78 4.58e-05 GTCTCCACTG GTGGCCGC GATTTCGGGC chr3R:27988367-27988487 75 4.58e-05 ACGGTTAAAG GGGGCCGC ATTAGTTTTC chr2L:12548959-12549079 2 5.78e-05 C GTTGGCAG TTGCCTGGGT chrX:5883532-5883652 16 6.59e-05 AATCTAAGAG GTTGCCAG ATCGGGGTAA chr2R:17590873-17590993 11 6.59e-05 ACATCAGAGC GTTGCCAG AGTCCAGCTG chrX:6255498-6255618 25 8.11e-05 CGATATTAGG GATGGCAC GGCATGGGAG chr3R:18274543-18274663 89 9.25e-05 TTAAACGAAT GCTGCCAG ACTCTGCATT chr2R:9593953-9594073 79 9.25e-05 GCCATCCCCA GCTGCCAG GCGTTTGGGA chrX:7162649-7162769 74 9.25e-05 AGTTTCAGCC GTTGGCCC ATAGATGGCG chr2L:18776704-18776824 20 9.25e-05 GGCGCCATCT GTTGGCCC ACCCCTGCTA chr2R:15818622-15818742 83 9.77e-05 CGCCACCTAT GCGGGCAC AGCTATAAGC chr3R:27604666-27604786 4 1.01e-04 ATT GCGGCCAC AACAATAGTG chr3R:22526513-22526633 11 1.27e-04 CTTACTTTTT GATGGCAG TGGAGTGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21535535-21535655 3.8e-06 67_[+2]_45 chr2R:16800186-16800306 3.8e-06 104_[+2]_8 chr2L:17784757-17784877 3.8e-06 42_[+2]_70 chrX:3288966-3289086 3.8e-06 44_[+2]_68 chrX:19208190-19208310 1e-05 32_[+2]_80 chr2L:5278531-5278651 1.8e-05 35_[+2]_77 chr2R:9988979-9989099 2.5e-05 93_[+2]_19 chr2L:21619267-21619387 2.5e-05 4_[+2]_108 chr2L:1614248-1614368 2.5e-05 6_[+2]_106 chr2R:18774932-18775052 2.5e-05 25_[+2]_87 chr3L:13236738-13236858 3.4e-05 108_[+2]_4 chr2R:15147778-15147898 3.8e-05 102_[+2]_10 chr2L:16743080-16743200 4.6e-05 69_[+2]_43 chrX:13329686-13329806 4.6e-05 21_[+2]_91 chrX:15887315-15887435 4.6e-05 77_[+2]_35 chr3R:27988367-27988487 4.6e-05 74_[+2]_38 chr2L:12548959-12549079 5.8e-05 1_[+2]_111 chrX:5883532-5883652 6.6e-05 15_[+2]_97 chr2R:17590873-17590993 6.6e-05 10_[+2]_102 chrX:6255498-6255618 8.1e-05 24_[+2]_88 chr3R:18274543-18274663 9.2e-05 88_[+2]_24 chr2R:9593953-9594073 9.2e-05 78_[+2]_34 chrX:7162649-7162769 9.2e-05 73_[+2]_39 chr2L:18776704-18776824 9.2e-05 19_[+2]_93 chr2R:15818622-15818742 9.8e-05 82_[+2]_30 chr3R:27604666-27604786 0.0001 3_[+2]_109 chr3R:22526513-22526633 0.00013 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTGSCRC width=8 seqs=27 chr2R:21535535-21535655 ( 68) GGTGGCGC 1 chr2R:16800186-16800306 ( 105) GGTGGCGC 1 chr2L:17784757-17784877 ( 43) GGTGGCGC 1 chrX:3288966-3289086 ( 45) GTTGGCGC 1 chrX:19208190-19208310 ( 33) GCTGCCGC 1 chr2L:5278531-5278651 ( 36) GGTGGCAC 1 chr2R:9988979-9989099 ( 94) GTTGCCAC 1 chr2L:21619267-21619387 ( 5) GTTGCCAC 1 chr2L:1614248-1614368 ( 7) GTTGCCAC 1 chr2R:18774932-18775052 ( 26) GTTGCCAC 1 chr3L:13236738-13236858 ( 109) GGTGGCGG 1 chr2R:15147778-15147898 ( 103) GTTGCCGG 1 chr2L:16743080-16743200 ( 70) GATGGCGC 1 chrX:13329686-13329806 ( 22) GATGGCGC 1 chrX:15887315-15887435 ( 78) GTGGCCGC 1 chr3R:27988367-27988487 ( 75) GGGGCCGC 1 chr2L:12548959-12549079 ( 2) GTTGGCAG 1 chrX:5883532-5883652 ( 16) GTTGCCAG 1 chr2R:17590873-17590993 ( 11) GTTGCCAG 1 chrX:6255498-6255618 ( 25) GATGGCAC 1 chr3R:18274543-18274663 ( 89) GCTGCCAG 1 chr2R:9593953-9594073 ( 79) GCTGCCAG 1 chrX:7162649-7162769 ( 74) GTTGGCCC 1 chr2L:18776704-18776824 ( 20) GTTGGCCC 1 chr2R:15818622-15818742 ( 83) GCGGGCAC 1 chr3R:27604666-27604786 ( 4) GCGGCCAC 1 chr3R:22526513-22526633 ( 11) GATGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 9.0e+001 -1140 -1140 257 -1140 -115 12 41 42 -1140 -1140 -18 136 -1140 -1140 257 -1140 -1140 150 163 -1140 -1140 255 -1140 -1140 65 -120 128 -1140 -1140 205 82 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 9.0e+001 0.000000 0.000000 1.000000 0.000000 0.148148 0.185185 0.222222 0.444444 0.000000 0.000000 0.148148 0.851852 0.000000 0.000000 1.000000 0.000000 0.000000 0.481481 0.518519 0.000000 0.000000 1.000000 0.000000 0.000000 0.518519 0.074074 0.407407 0.000000 0.000000 0.703704 0.296296 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGSCRC MEME-2 regular expression -------------------------------------------------------------------------------- G[TG]TG[GC]C[AG][CG] -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CACGCGCA MEME-3 width = 8 sites = 11 llr = 114 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:::2:a pos.-specific C 9:9:a1a: probability G 1318:7:: matrix T :::2:::: bits 2.6 * * 2.3 * * 2.1 * * * * 1.8 * *** * Relative 1.5 * *** ** Entropy 1.3 * ****** (15.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACGCGCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7162649-7162769 109 2.57e-06 GCTTATTGGA CACGCGCA AACG chr2R:12102664-12102784 23 2.57e-06 TGGCCTAAAG CACGCGCA TACAGTACGC chr2L:9494931-9495051 111 3.87e-06 CTGCATGTCG CGCGCGCA AA chr2R:18125807-18125927 27 3.87e-06 TTGGAAAGCG CGCGCGCA GAAGCGCCAG chr2L:21619267-21619387 48 1.15e-05 ccaaaacggt cacgccca cacttttagg chr2L:7515504-7515624 30 1.15e-05 TTTCATTGTA CACGCACA GAAAAACTAT chr3L:4379048-4379168 59 1.66e-05 ATAGATTAGA CACTCGCA AAAAGGTGCA chr2L:5043926-5044046 53 1.66e-05 TCAAAATTTG CACTCGCA CTGTCTGCAT chr3R:10675272-10675392 69 2.17e-05 ACATAGTAGT GACGCGCA CCAAATATCT chr2R:14645112-14645232 25 2.17e-05 GAAAAGCACA CAGGCGCA CTGTGGCGTT chr2L:21629350-21629470 112 2.56e-05 TCGGTTTTTG CGCGCACA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7162649-7162769 2.6e-06 108_[+3]_4 chr2R:12102664-12102784 2.6e-06 22_[+3]_90 chr2L:9494931-9495051 3.9e-06 110_[+3]_2 chr2R:18125807-18125927 3.9e-06 26_[+3]_86 chr2L:21619267-21619387 1.2e-05 47_[+3]_65 chr2L:7515504-7515624 1.2e-05 29_[+3]_83 chr3L:4379048-4379168 1.7e-05 58_[+3]_54 chr2L:5043926-5044046 1.7e-05 52_[+3]_60 chr3R:10675272-10675392 2.2e-05 68_[+3]_44 chr2R:14645112-14645232 2.2e-05 24_[+3]_88 chr2L:21629350-21629470 2.6e-05 111_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGCGCA width=8 seqs=11 chrX:7162649-7162769 ( 109) CACGCGCA 1 chr2R:12102664-12102784 ( 23) CACGCGCA 1 chr2L:9494931-9495051 ( 111) CGCGCGCA 1 chr2R:18125807-18125927 ( 27) CGCGCGCA 1 chr2L:21619267-21619387 ( 48) CACGCCCA 1 chr2L:7515504-7515624 ( 30) CACGCACA 1 chr3L:4379048-4379168 ( 59) CACTCGCA 1 chr2L:5043926-5044046 ( 53) CACTCGCA 1 chr3R:10675272-10675392 ( 69) GACGCGCA 1 chr2R:14645112-14645232 ( 25) CAGGCGCA 1 chr2L:21629350-21629470 ( 112) CGCGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.0e+004 -1010 241 -88 -1010 114 -1010 70 -1010 -1010 241 -88 -1010 -1010 -1010 228 -87 -1010 255 -1010 -1010 -86 -91 211 -1010 -1010 255 -1010 -1010 160 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+004 0.000000 0.909091 0.090909 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 1.000000 0.000000 0.000000 0.181818 0.090909 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGCGCA MEME-3 regular expression -------------------------------------------------------------------------------- C[AG]CGCGCA -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCTGGCC MEME-4 width = 8 sites = 3 llr = 39 E-value = 3.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::a:::aa probability G :a::aa:: matrix T :::a:::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.5 ******** Entropy 1.3 ******** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGCTGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5326948-5327068 61 2.55e-06 TATTGATTTT AGCTGGCC TCATAGCTTC chrX:20257319-20257439 112 2.55e-06 AGCACTGATT AGCTGGCC A chr2L:1614248-1614368 35 2.55e-06 CACTGTCAGG AGCTGGCC GCTATTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5326948-5327068 2.6e-06 60_[+4]_52 chrX:20257319-20257439 2.6e-06 111_[+4]_1 chr2L:1614248-1614368 2.6e-06 34_[+4]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTGGCC width=8 seqs=3 chr2L:5326948-5327068 ( 61) AGCTGGCC 1 chrX:20257319-20257439 ( 112) AGCTGGCC 1 chr2L:1614248-1614368 ( 35) AGCTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 3.0e+004 160 -823 -823 -823 -823 -823 257 -823 -823 255 -823 -823 -823 -823 -823 159 -823 -823 257 -823 -823 -823 257 -823 -823 255 -823 -823 -823 255 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.0e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTGGCC MEME-4 regular expression -------------------------------------------------------------------------------- AGCTGGCC -------------------------------------------------------------------------------- Time 26.19 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCTGGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5:a::::: probability G 5a::aaaa matrix T :::a:::: bits 2.6 ** **** 2.3 ** **** 2.1 ** **** 1.8 ** **** Relative 1.5 ******** Entropy 1.3 ******** (18.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGGGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236738-13236858 99 2.55e-06 AATGGCAAGG GGCTGGGG GCGGTGGCGG chr3R:27988367-27988487 45 2.55e-06 GAACGCGACC CGCTGGGG AATTTGTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236738-13236858 2.6e-06 98_[+5]_14 chr3R:27988367-27988487 2.6e-06 44_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCTGGGG width=8 seqs=2 chr3L:13236738-13236858 ( 99) GGCTGGGG 1 chr3R:27988367-27988487 ( 45) CGCTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.3e+004 -765 155 157 -765 -765 -765 257 -765 -765 255 -765 -765 -765 -765 -765 159 -765 -765 257 -765 -765 -765 257 -765 -765 -765 257 -765 -765 -765 257 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+004 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGGGG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]GCTGGGG -------------------------------------------------------------------------------- Time 32.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5225673-5225793 8.26e-01 120 chrX:8178332-8178452 8.32e-01 120 chrX:114958-115078 9.65e-02 120 chr2L:17368640-17368760 6.53e-01 120 chr2L:1048574-1048694 8.90e-01 120 chr2R:11144957-11145077 9.00e-01 120 chr2R:8572745-8572865 4.32e-01 120 chr3L:9695741-9695861 9.00e-01 120 chr2L:7515504-7515624 8.02e-02 29_[+3(1.15e-05)]_83 chr2R:7054229-7054349 7.73e-01 120 chr2L:12548959-12549079 6.57e-03 1_[+2(5.78e-05)]_111 chr2L:5610224-5610344 6.02e-01 120 chr3L:5662208-5662328 2.51e-01 120 chr2R:10681449-10681569 5.13e-01 120 chr2R:14021852-14021972 1.42e-01 120 chrX:10741156-10741276 9.92e-01 120 chr2L:21784933-21785053 9.86e-01 120 chr2L:5771340-5771460 2.63e-03 90_[+4(1.29e-05)]_22 chr2L:14619735-14619855 4.88e-01 120 chr3R:6414907-6415027 1.00e+00 120 chr3L:10818392-10818512 5.66e-01 120 chr2R:20994792-20994912 4.20e-03 120 chr2R:18774932-18775052 2.68e-02 25_[+2(2.54e-05)]_87 chr2R:10347616-10347736 8.26e-01 120 chr2R:13043332-13043452 8.59e-01 120 chr2R:15155127-15155247 9.73e-01 120 chr2R:14503751-14503871 7.22e-01 120 chr3L:5630234-5630354 7.57e-01 120 chr2R:13507178-13507298 4.16e-01 120 chrX:13023905-13024025 6.48e-01 120 chr2L:2873387-2873507 7.84e-01 120 chrX:19107014-19107134 1.37e-01 120 chr2R:22789371-22789491 8.00e-01 120 chrX:5866278-5866398 2.97e-01 120 chrX:18533362-18533482 9.32e-01 120 chr3R:7500726-7500846 5.15e-01 120 chr2R:21091971-21092091 6.24e-01 120 chr3L:21047199-21047319 1.60e-01 120 chr2L:11628372-11628492 6.74e-03 11_[+1(5.95e-05)]_101 chr3R:21636950-21637070 9.52e-01 120 chr3R:24303240-24303360 5.75e-01 120 chr2L:22924641-22924761 3.37e-01 120 chr2R:24515307-24515427 3.50e-01 120 chr2L:12867656-12867776 3.09e-01 120 chr2R:7139363-7139483 5.54e-01 120 chr2L:14586789-14586909 9.46e-01 120 chr2L:1316581-1316701 9.42e-01 120 chr2R:16344401-16344521 1.50e-02 120 chr2R:22387662-22387782 6.21e-01 120 chr3R:8979995-8980115 4.86e-03 25_[+1(1.32e-06)]_87 chr2R:12102664-12102784 3.52e-05 22_[+3(2.57e-06)]_90 chr3L:1534248-1534368 7.06e-02 120 chr2R:13005429-13005549 9.04e-01 120 chr2R:13453515-13453635 1.52e-04 76_[+2(3.82e-06)]_36 chrX:4699853-4699973 9.93e-01 120 chr2L:17588706-17588826 1.00e+00 120 chrX:3288966-3289086 1.28e-02 44_[+2(3.82e-06)]_68 chr2R:7879188-7879308 9.62e-01 120 chrX:6255498-6255618 4.24e-03 24_[+2(8.11e-05)]_88 chr2L:8610934-8611054 2.08e-01 120 chrX:2011708-2011828 9.75e-01 120 chr2L:4726121-4726241 3.63e-01 120 chr3L:13478747-13478867 7.46e-01 120 chr4:132096-132216 5.80e-01 120 chr2R:19311011-19311131 4.74e-01 120 chr2L:3740602-3740722 2.22e-01 120 chr3L:7528512-7528632 9.87e-01 120 chr2L:18776704-18776824 8.62e-06 6_[+2(8.99e-06)]_5_[+2(9.25e-05)]_\ 93 chr2L:17204002-17204122 5.76e-01 120 chrX:11715287-11715407 6.40e-01 120 chr2L:8746443-8746563 7.04e-01 120 chr3R:16704426-16704546 9.09e-01 120 chrX:16103555-16103675 9.66e-01 120 chr2L:13049167-13049287 1.55e-01 120 chr3R:19011071-19011191 9.88e-01 120 chr2L:17784757-17784877 1.62e-04 42_[+2(3.82e-06)]_70 chr3R:5059504-5059624 3.00e-01 120 chr2L:13876836-13876956 3.08e-03 80_[+1(1.82e-05)]_32 chr2R:5090462-5090582 3.31e-01 120 chr3R:27988367-27988487 1.08e-06 44_[+5(2.55e-06)]_22_[+2(4.58e-05)]_\ 38 chrX:8112858-8112978 8.99e-01 120 chr2L:4971433-4971553 4.34e-03 120 chr3R:28545007-28545127 9.99e-01 120 chr3R:28811943-28812063 9.97e-01 120 chr2R:13029104-13029224 8.73e-02 95_[+4(8.82e-05)]_17 chr2L:7890824-7890944 3.63e-03 55_[+1(2.28e-05)]_57 chr2R:14645112-14645232 1.24e-02 24_[+3(2.17e-05)]_88 chr2L:11517288-11517408 3.99e-01 120 chr2L:8365830-8365950 8.62e-01 120 chr2L:7871908-7872028 8.66e-01 120 chr3L:5182330-5182450 7.41e-01 120 chr2L:1650121-1650241 7.01e-01 120 chr2R:18125807-18125927 2.42e-05 26_[+3(3.87e-06)]_3_[+1(1.82e-05)]_\ 75 chr3R:22526513-22526633 3.23e-02 120 chrX:5970559-5970679 9.16e-01 120 chr3L:11408850-11408970 1.15e-01 120 chr3L:14999721-14999841 5.32e-01 120 chr2R:15322332-15322452 6.60e-01 120 chr2L:2133161-2133281 1.37e-03 40_[+1(2.28e-05)]_72 chr3L:3760762-3760882 8.44e-01 120 chr2R:23942358-23942478 4.40e-01 120 chr2L:10366576-10366696 7.13e-01 120 chr2R:23818416-23818536 2.67e-02 30_[+1(9.43e-05)]_82 chr3L:4262549-4262669 9.95e-01 120 chrX:7703119-7703239 1.00e+00 120 chr3R:21887656-21887776 1.20e-01 [+5(8.84e-05)]_112 chr2R:20590662-20590782 1.00e+00 120 chr2L:19019288-19019408 6.26e-01 120 chr3L:18837989-18838109 5.45e-01 120 chr3L:13845427-13845547 5.24e-02 120 chr2L:2192398-2192518 6.69e-01 120 chr3L:8689838-8689958 4.42e-01 120 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5_[+5(1.27e-05)]_1 chr2R:20316187-20316307 1.93e-03 90_[+5(8.84e-05)]_22 chr2R:11602087-11602207 1.00e+00 120 chr2L:5326948-5327068 4.48e-03 60_[+4(2.55e-06)]_52 chr3L:17791660-17791780 9.33e-01 120 chr3L:4379048-4379168 7.05e-02 58_[+3(1.66e-05)]_54 chr2R:11204240-11204360 6.17e-01 120 chr3R:20948101-20948221 1.06e-03 80_[+1(1.32e-06)]_32 chrX:19009012-19009132 1.98e-01 120 chr2L:19517430-19517550 9.44e-01 120 chrX:11454478-11454598 1.88e-01 120 chr2R:9988979-9989099 4.65e-02 93_[+2(2.54e-05)]_19 chr3R:11243969-11244089 2.42e-01 28_[+3(8.11e-05)]_84 chr3L:8692039-8692159 7.98e-01 120 chrX:5883532-5883652 1.47e-03 15_[+2(6.59e-05)]_32_[+1(5.37e-05)]_\ 57 chr2L:13549443-13549563 2.81e-01 120 chr3R:10675272-10675392 1.97e-02 68_[+3(2.17e-05)]_44 chr3L:5152455-5152575 9.16e-01 120 chr2R:12772724-12772844 9.57e-01 120 chr2R:21535535-21535655 1.07e-03 67_[+2(3.82e-06)]_45 chr3R:23176530-23176650 6.70e-02 120 chr3R:18274543-18274663 1.61e-01 88_[+2(9.25e-05)]_24 chr3L:16165767-16165887 8.00e-01 120 chr2R:24402662-24402782 2.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************