******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sima.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:31610307-31610427 1.0000 120 chr3L:20823254-20823374 1.0000 120 chr2R:21091881-21092001 1.0000 120 chr3L:12755078-12755198 1.0000 120 chr3L:3875187-3875307 1.0000 120 chrX:7015104-7015224 1.0000 120 chr3L:8440866-8440986 1.0000 120 chr3L:21317998-21318118 1.0000 120 chrX:5084807-5084927 1.0000 120 chr3L:1139519-1139639 1.0000 120 chr2L:20890038-20890158 1.0000 120 chr3L:4413120-4413240 1.0000 120 chrX:3928681-3928801 1.0000 120 chr3R:9220178-9220298 1.0000 120 chr2R:18693260-18693380 1.0000 120 chr2L:21263764-21263884 1.0000 120 chrX:8677574-8677694 1.0000 120 chr2R:9309622-9309742 1.0000 120 chr3R:28887877-28887997 1.0000 120 chr2L:14372359-14372479 1.0000 120 chr3R:18439434-18439554 1.0000 120 chr2R:9440367-9440487 1.0000 120 chr2L:10277043-10277163 1.0000 120 chr3L:5881763-5881883 1.0000 120 chr2R:17548614-17548734 1.0000 120 chr3R:9870097-9870217 1.0000 120 chr2L:5496824-5496944 1.0000 120 chrX:7703123-7703243 1.0000 120 chr3R:30789503-30789623 1.0000 120 chr2L:13515142-13515262 1.0000 120 chr3R:14284497-14284617 1.0000 120 chrX:263738-263858 1.0000 120 chr3R:15242738-15242858 1.0000 120 chr3R:21151507-21151627 1.0000 120 chrX:15844310-15844430 1.0000 120 chrX:12221685-12221805 1.0000 120 chrX:3085982-3086102 1.0000 120 chr3R:23332743-23332863 1.0000 120 chr3R:13446721-13446841 1.0000 120 chr3R:16992084-16992204 1.0000 120 chr3R:9986192-9986312 1.0000 120 chr2L:1428511-1428631 1.0000 120 chrX:19298937-19299057 1.0000 120 chr2R:23618189-23618309 1.0000 120 chrX:3363842-3363962 1.0000 120 chr2R:11203052-11203172 1.0000 120 chrX:16773147-16773267 1.0000 120 chr3R:9630604-9630724 1.0000 120 chrX:13563796-13563916 1.0000 120 chr3R:5198527-5198647 1.0000 120 chr3R:26923969-26924089 1.0000 120 chr2L:6788044-6788164 1.0000 120 chr3L:14780349-14780469 1.0000 120 chr3R:22421727-22421847 1.0000 120 chr2R:22063322-22063442 1.0000 120 chr3L:350779-350899 1.0000 120 chr3L:18870129-18870249 1.0000 120 chr3R:10664912-10665032 1.0000 120 chr2R:7052495-7052615 1.0000 120 chr3R:23118064-23118184 1.0000 120 chrX:21241953-21242073 1.0000 120 chrX:526655-526775 1.0000 120 chrX:15615618-15615738 1.0000 120 chr3L:2733307-2733427 1.0000 120 chr2R:21076176-21076296 1.0000 120 chr2L:8320186-8320306 1.0000 120 chr3R:25453156-25453276 1.0000 120 chr2R:14130418-14130538 1.0000 120 chr3R:9710965-9711085 1.0000 120 chr3R:24058181-24058301 1.0000 120 chr3R:28329392-28329512 1.0000 120 chrX:8690143-8690263 1.0000 120 chrX:1854206-1854326 1.0000 120 chr3R:28332457-28332577 1.0000 120 chr2L:490189-490309 1.0000 120 chr3L:15714225-15714345 1.0000 120 chr3R:21127579-21127699 1.0000 120 chr3R:11458638-11458758 1.0000 120 chr3L:18403294-18403414 1.0000 120 chrX:8538353-8538473 1.0000 120 chr2R:17215957-17216077 1.0000 120 chr3R:5683083-5683203 1.0000 120 chr3L:9023680-9023800 1.0000 120 chrX:9416227-9416347 1.0000 120 chr3L:5869751-5869871 1.0000 120 chr3R:7346582-7346702 1.0000 120 chr3L:9045393-9045513 1.0000 120 chr3R:24962608-24962728 1.0000 120 chr3R:18198642-18198762 1.0000 120 chr3R:11454650-11454770 1.0000 120 chr2R:20000513-20000633 1.0000 120 chr2L:250933-251053 1.0000 120 chr3L:15956581-15956701 1.0000 120 chrX:19565817-19565937 1.0000 120 chr2R:12172697-12172817 1.0000 120 chr2L:4045510-4045630 1.0000 120 chr2L:13513837-13513957 1.0000 120 chr2L:12004235-12004355 1.0000 120 chr3R:26963904-26964024 1.0000 120 chr2L:19582256-19582376 1.0000 120 chr3L:347073-347193 1.0000 120 chrX:17713921-17714041 1.0000 120 chr3L:21464438-21464558 1.0000 120 chrX:8114546-8114666 1.0000 120 chr2R:7773111-7773231 1.0000 120 chr2R:10535904-10536024 1.0000 120 chr3L:21276384-21276504 1.0000 120 chr2R:11296774-11296894 1.0000 120 chr3L:6124766-6124886 1.0000 120 chrX:3206016-3206136 1.0000 120 chr3R:31977640-31977760 1.0000 120 chr3L:11092347-11092467 1.0000 120 chrX:7332702-7332822 1.0000 120 chr3R:27916596-27916716 1.0000 120 chr3L:10822672-10822792 1.0000 120 chr2R:20838031-20838151 1.0000 120 chrX:10263655-10263775 1.0000 120 chr3L:13235586-13235706 1.0000 120 chr2R:9302966-9303086 1.0000 120 chr2R:19997565-19997685 1.0000 120 chr2L:20326455-20326575 1.0000 120 chrX:11580358-11580478 1.0000 120 chr3R:6881675-6881795 1.0000 120 chr2R:24768004-24768124 1.0000 120 chrX:10232597-10232717 1.0000 120 chrX:13214184-13214304 1.0000 120 chr3L:18215861-18215981 1.0000 120 chr3R:24348888-24349008 1.0000 120 chrX:16384082-16384202 1.0000 120 chr2L:1648756-1648876 1.0000 120 chr3R:7506458-7506578 1.0000 120 chr2L:6046046-6046166 1.0000 120 chr3R:27407165-27407285 1.0000 120 chr2L:13548123-13548243 1.0000 120 chr2L:21038907-21039027 1.0000 120 chr2L:6488792-6488912 1.0000 120 chr3L:2537244-2537364 1.0000 120 chrX:8774164-8774284 1.0000 120 chr2L:7135236-7135356 1.0000 120 chr2R:13942232-13942352 1.0000 120 chr3R:20634170-20634290 1.0000 120 chr3L:3638741-3638861 1.0000 120 chr3R:10332961-10333081 1.0000 120 chr3R:6416394-6416514 1.0000 120 chr2L:19358196-19358316 1.0000 120 chr3L:12749717-12749837 1.0000 120 chr2R:10477358-10477478 1.0000 120 chr3R:23658114-23658234 1.0000 120 chr2R:23228077-23228197 1.0000 120 chr3R:9429089-9429209 1.0000 120 chr2R:10276443-10276563 1.0000 120 chr2L:20287361-20287481 1.0000 120 chr2L:7420770-7420890 1.0000 120 chr2L:16329179-16329299 1.0000 120 chr3L:1579480-1579600 1.0000 120 chr3R:25631286-25631406 1.0000 120 chr3L:14339007-14339127 1.0000 120 chr3R:4437162-4437282 1.0000 120 chr2L:8846061-8846181 1.0000 120 chr3L:2766637-2766757 1.0000 120 chr2L:16535291-16535411 1.0000 120 chr2L:481847-481967 1.0000 120 chr3R:15973002-15973122 1.0000 120 chrX:11338397-11338517 1.0000 120 chr2L:10261143-10261263 1.0000 120 chr3R:8846300-8846420 1.0000 120 chr3R:28832035-28832155 1.0000 120 chr3L:10664672-10664792 1.0000 120 chr3L:10656935-10657055 1.0000 120 chr3R:25193879-25193999 1.0000 120 chr2L:13145210-13145330 1.0000 120 chr2L:2179529-2179649 1.0000 120 chr2R:17422100-17422220 1.0000 120 chrX:2743173-2743293 1.0000 120 chr2R:22395917-22396037 1.0000 120 chr3L:4475086-4475206 1.0000 120 chr3R:21828313-21828433 1.0000 120 chr3R:18929092-18929212 1.0000 120 chr2R:18881972-18882092 1.0000 120 chr2L:19870044-19870164 1.0000 120 chr3R:13914883-13915003 1.0000 120 chr3R:9496853-9496973 1.0000 120 chrX:6599365-6599485 1.0000 120 chrX:9778610-9778730 1.0000 120 chr2L:7564981-7565101 1.0000 120 chr2L:20917675-20917795 1.0000 120 chr3R:11778284-11778404 1.0000 120 chrX:6793509-6793629 1.0000 120 chr3R:18404905-18405025 1.0000 120 chr2L:8164337-8164457 1.0000 120 chr3L:18848579-18848699 1.0000 120 chrX:15043169-15043289 1.0000 120 chr3R:15131805-15131925 1.0000 120 chr3R:13686660-13686780 1.0000 120 chr3L:21568996-21569116 1.0000 120 chr2L:224664-224784 1.0000 120 chr2L:14556917-14557037 1.0000 120 chr3R:15087733-15087853 1.0000 120 chr3L:3567270-3567390 1.0000 120 chr2R:21704541-21704661 1.0000 120 chr2R:11207208-11207328 1.0000 120 chr2L:17380026-17380146 1.0000 120 chr2R:19425016-19425136 1.0000 120 chr3R:15218984-15219104 1.0000 120 chr3L:14662003-14662123 1.0000 120 chrX:9486966-9487086 1.0000 120 chr2R:15869171-15869291 1.0000 120 chr3L:3899056-3899176 1.0000 120 chr3L:11422412-11422532 1.0000 120 chr3R:9352132-9352252 1.0000 120 chr3L:10519082-10519202 1.0000 120 chr2L:11004074-11004194 1.0000 120 chr2L:11277959-11278079 1.0000 120 chrX:15139397-15139517 1.0000 120 chr3R:23940600-23940720 1.0000 120 chr2L:18677464-18677584 1.0000 120 chr2L:8162496-8162616 1.0000 120 chr3R:9404171-9404291 1.0000 120 chr2R:8251659-8251779 1.0000 120 chr3R:21297658-21297778 1.0000 120 chr3L:5155046-5155166 1.0000 120 chr4:982825-982945 1.0000 120 chr3R:5053744-5053864 1.0000 120 chr3R:22145919-22146039 1.0000 120 chr2L:19887604-19887724 1.0000 120 chr3L:14051064-14051184 1.0000 120 chr3L:18996327-18996447 1.0000 120 chr2R:11063010-11063130 1.0000 120 chr2R:20999907-21000027 1.0000 120 chr2L:17382488-17382608 1.0000 120 chr3R:12654016-12654136 1.0000 120 chr3R:27135850-27135970 1.0000 120 chr2R:10230761-10230881 1.0000 120 chr2L:7123769-7123889 1.0000 120 chr2R:19256007-19256127 1.0000 120 chr3L:18029726-18029846 1.0000 120 chr3R:25069760-25069880 1.0000 120 chrX:15619386-15619506 1.0000 120 chr3L:14111547-14111667 1.0000 120 chr2L:5907534-5907654 1.0000 120 chr3L:16647925-16648045 1.0000 120 chr2R:16196780-16196900 1.0000 120 chr3L:16782520-16782640 1.0000 120 chr2L:13083737-13083857 1.0000 120 chr3R:16247723-16247843 1.0000 120 chr2L:10527319-10527439 1.0000 120 chr3L:545657-545777 1.0000 120 chr2R:22395355-22395475 1.0000 120 chr3R:5672702-5672822 1.0000 120 chr3R:12627844-12627964 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sima/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sima.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.183 G 0.179 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.183 G 0.179 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BGCTGCTG MEME-1 width = 8 sites = 20 llr = 189 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::::2: pos.-specific C 4:a2:a11 probability G 3a11a::a matrix T 3::7::8: bits 2.5 * ** 2.2 ** ** * 2.0 ** ** * 1.7 ** ** * Relative 1.5 ** ** * Entropy 1.2 ** ** * (13.6 bits) 1.0 ** ** * 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CGCTGCTG consensus G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5672702-5672822 72 3.67e-06 TGTTCTGGTG CGCTGCTG TTTACAGCTC chr2R:21704541-21704661 98 3.67e-06 GCTCGCCGCT CGCTGctg gcacaggcac chr3R:11454650-11454770 88 3.67e-06 ATTGACTGTA CGCTGCTG TGTTTGCTTA chr3R:13686660-13686780 71 9.33e-06 CTCTGGCCCT CGCCGCTG TTTGTTTTCT chr2L:19582256-19582376 3 1.58e-05 GA TGCTGCTG TCGTCGATTT chr3R:18198642-18198762 40 1.58e-05 TTGATATTGT TGCTGCTG TTGCATACGC chr3L:15714225-15714345 12 1.58e-05 CTCAGGCGTG TGCTGCTG CTAATGAGCG chr2L:481847-481967 29 1.78e-05 AACGCACGTA GGCCGCTG ACTACTGGAA chr3L:21464438-21464558 12 2.34e-05 TCGCTCGCCT CGCTGCAG TTGTTTTCCC chrX:12221685-12221805 49 2.34e-05 GAAGACTACG CGCTGCAG ATTTAGATAT chrX:3085982-3086102 42 2.71e-05 TCGCAACTTG TGCCGCTG CGAAGTCTTC chr3R:18439434-18439554 34 2.71e-05 TGTTGCTGCC TGCCGCTG ACGTTTGACG chr3L:10519082-10519202 11 2.91e-05 CTCCCTTTCT GGCGGCTG TTGCCGTCTC chr2R:17215957-17216077 11 2.91e-05 TATGGAAACA GGCGGCTG AACATAAGAT chr2L:19887604-19887724 50 3.54e-05 TCTAGCGGCG AGCTGCTG CTTCTGTCTT chr3L:5869751-5869871 59 3.54e-05 GGCGTTTCGT AGCTGCTG CGACTTCACA chr3R:27135850-27135970 43 3.89e-05 TTGTTTTCGT GGCTGCAG CAGTAACAGG chr2L:20287361-20287481 56 4.10e-05 TTTCCGTTTC CGCTGCCG CGCCCGCACT chr2R:10230761-10230881 3 6.90e-05 TT CGCTGCTC GGCTGCTTAC chr3L:12755078-12755198 90 9.01e-05 CTCATAACGT GGGTGCTG AACACGTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5672702-5672822 3.7e-06 71_[+1]_41 chr2R:21704541-21704661 3.7e-06 97_[+1]_15 chr3R:11454650-11454770 3.7e-06 87_[+1]_25 chr3R:13686660-13686780 9.3e-06 70_[+1]_42 chr2L:19582256-19582376 1.6e-05 2_[+1]_110 chr3R:18198642-18198762 1.6e-05 39_[+1]_73 chr3L:15714225-15714345 1.6e-05 11_[+1]_101 chr2L:481847-481967 1.8e-05 28_[+1]_84 chr3L:21464438-21464558 2.3e-05 11_[+1]_101 chrX:12221685-12221805 2.3e-05 48_[+1]_64 chrX:3085982-3086102 2.7e-05 41_[+1]_71 chr3R:18439434-18439554 2.7e-05 33_[+1]_79 chr3L:10519082-10519202 2.9e-05 10_[+1]_102 chr2R:17215957-17216077 2.9e-05 10_[+1]_102 chr2L:19887604-19887724 3.5e-05 49_[+1]_63 chr3L:5869751-5869871 3.5e-05 58_[+1]_54 chr3R:27135850-27135970 3.9e-05 42_[+1]_70 chr2L:20287361-20287481 4.1e-05 55_[+1]_57 chr2R:10230761-10230881 6.9e-05 2_[+1]_110 chr3L:12755078-12755198 9e-05 89_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGCTGCTG width=8 seqs=20 chr3R:5672702-5672822 ( 72) CGCTGCTG 1 chr2R:21704541-21704661 ( 98) CGCTGCTG 1 chr3R:11454650-11454770 ( 88) CGCTGCTG 1 chr3R:13686660-13686780 ( 71) CGCCGCTG 1 chr2L:19582256-19582376 ( 3) TGCTGCTG 1 chr3R:18198642-18198762 ( 40) TGCTGCTG 1 chr3L:15714225-15714345 ( 12) TGCTGCTG 1 chr2L:481847-481967 ( 29) GGCCGCTG 1 chr3L:21464438-21464558 ( 12) CGCTGCAG 1 chrX:12221685-12221805 ( 49) CGCTGCAG 1 chrX:3085982-3086102 ( 42) TGCCGCTG 1 chr3R:18439434-18439554 ( 34) TGCCGCTG 1 chr3L:10519082-10519202 ( 11) GGCGGCTG 1 chr2R:17215957-17216077 ( 11) GGCGGCTG 1 chr2L:19887604-19887724 ( 50) AGCTGCTG 1 chr3L:5869751-5869871 ( 59) AGCTGCTG 1 chr3R:27135850-27135970 ( 43) GGCTGCAG 1 chr2L:20287361-20287481 ( 56) CGCTGCCG 1 chr2R:10230761-10230881 ( 3) CGCTGCTC 1 chr3L:12755078-12755198 ( 90) GGGTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 3.5e+002 -165 113 48 -37 -1097 -1097 248 -1097 -1097 238 -184 -1097 -1097 13 -84 111 -1097 -1097 248 -1097 -1097 245 -1097 -1097 -107 -187 -1097 131 -1097 -187 241 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.5e+002 0.100000 0.400000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.000000 0.200000 0.100000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.150000 0.050000 0.000000 0.800000 0.000000 0.050000 0.950000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCTGCTG MEME-1 regular expression -------------------------------------------------------------------------------- [CGT]GC[TC]GCTG -------------------------------------------------------------------------------- Time 8.31 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGCK MEME-2 width = 8 sites = 16 llr = 158 E-value = 8.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:3:3: pos.-specific C :a:9::7: probability G a::1:a15 matrix T ::::8::5 bits 2.5 ** * 2.2 ** * * 2.0 ** * * 1.7 **** * Relative 1.5 **** * Entropy 1.2 **** ** (14.2 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACTGCG consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15619386-15619506 35 3.58e-06 CGAAGACGAT GCACTGCG AGAAATAAGA chr2L:7123769-7123889 34 3.58e-06 TGCACTCTAC GCACTGCG AGAAATATTC chr2L:10261143-10261263 7 3.58e-06 TTTTTA GCACTGCG GTTTTAAACA chr3L:2733307-2733427 18 3.58e-06 TCGTTTCAAT GCACTGCG CAAAATTTTG chr2L:8164337-8164457 51 1.00e-05 TGAGCACATG GCACTGCT GTTTGTTCTT chr3L:15714225-15714345 75 1.00e-05 CAAGTTAGCC GCACTGCT CTTTGTTTTA chrX:7015104-7015224 108 1.00e-05 GTGAGCAACT GCACTGCT TGCCA chr3R:16247723-16247843 55 2.60e-05 CCTACTGAAA GCACAGCT TGTCAATCAA chrX:8774164-8774284 9 2.60e-05 ACGCAGTT GCACTGAG AGAAATCGAG chr2L:13548123-13548243 7 2.60e-05 CTGAGC GCACAGCT GACGGCGGTA chr3R:18198642-18198762 5 2.60e-05 gaac gcacaGCT TCACAGATGG chr2L:6788044-6788164 30 2.60e-05 TGCTAACGCT GCACTGAG AAAAATAAAC chr3L:20823254-20823374 88 3.71e-05 aaactatttt gcactgat ttacacgttt chr3L:4413120-4413240 68 4.06e-05 CCACACCCAT GCACTGGG AAAAATAAGT chr3R:21151507-21151627 26 4.66e-05 CAGTGTTTAT GCACAGAG AAAAACATGT chr3L:10822672-10822792 103 7.35e-05 AATATTTTTC GCAGTGCT TGGTAGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15619386-15619506 3.6e-06 34_[+2]_78 chr2L:7123769-7123889 3.6e-06 33_[+2]_79 chr2L:10261143-10261263 3.6e-06 6_[+2]_106 chr3L:2733307-2733427 3.6e-06 17_[+2]_95 chr2L:8164337-8164457 1e-05 50_[+2]_62 chr3L:15714225-15714345 1e-05 74_[+2]_38 chrX:7015104-7015224 1e-05 107_[+2]_5 chr3R:16247723-16247843 2.6e-05 54_[+2]_58 chrX:8774164-8774284 2.6e-05 8_[+2]_104 chr2L:13548123-13548243 2.6e-05 6_[+2]_106 chr3R:18198642-18198762 2.6e-05 4_[+2]_108 chr2L:6788044-6788164 2.6e-05 29_[+2]_83 chr3L:20823254-20823374 3.7e-05 87_[+2]_25 chr3L:4413120-4413240 4.1e-05 67_[+2]_45 chr3R:21151507-21151627 4.7e-05 25_[+2]_87 chr3L:10822672-10822792 7.4e-05 102_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGCK width=8 seqs=16 chrX:15619386-15619506 ( 35) GCACTGCG 1 chr2L:7123769-7123889 ( 34) GCACTGCG 1 chr2L:10261143-10261263 ( 7) GCACTGCG 1 chr3L:2733307-2733427 ( 18) GCACTGCG 1 chr2L:8164337-8164457 ( 51) GCACTGCT 1 chr3L:15714225-15714345 ( 75) GCACTGCT 1 chrX:7015104-7015224 ( 108) GCACTGCT 1 chr3R:16247723-16247843 ( 55) GCACAGCT 1 chrX:8774164-8774284 ( 9) GCACTGAG 1 chr2L:13548123-13548243 ( 7) GCACAGCT 1 chr3R:18198642-18198762 ( 5) GCACAGCT 1 chr2L:6788044-6788164 ( 30) GCACTGAG 1 chr3L:20823254-20823374 ( 88) GCACTGAT 1 chr3L:4413120-4413240 ( 68) GCACTGGG 1 chr3R:21151507-21151627 ( 26) GCACAGAG 1 chr3L:10822672-10822792 ( 103) GCAGTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 8.3e+002 -1064 -1064 248 -1064 -1064 245 -1064 -1064 167 -1064 -1064 -1064 -1064 236 -151 -1064 -33 -1064 -1064 121 -1064 -1064 248 -1064 -33 191 -151 -1064 -1064 -1064 148 63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.250000 0.687500 0.062500 0.000000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGCK MEME-2 regular expression -------------------------------------------------------------------------------- GCAC[TA]G[CA][GT] -------------------------------------------------------------------------------- Time 14.60 secs. ******************************************************************************** ******************************************************************************** MOTIF SKGGGGCG MEME-3 width = 8 sites = 8 llr = 89 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 61:1::a: probability G 43a9aa:a matrix T :5:::::: bits 2.5 * **** 2.2 * **** 2.0 ****** 1.7 ****** Relative 1.5 * ****** Entropy 1.2 * ****** (16.0 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CTGGGGCG consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:490189-490309 24 1.99e-06 TGGCGCCTTT CTGGGGCG CCATCTATGC chrX:9778610-9778730 70 3.09e-06 TTCAACCGCC CGGGGGCG CTAGTCGGCA chr3R:13686660-13686780 112 5.03e-06 TGCTCTCGCC GTGGGGCG A chr3L:11092347-11092467 41 5.03e-06 TGGATTATGC GTGGGGCG GTAGCGATGT chr2L:1428511-1428631 92 5.03e-06 GATATCCCCT GTGGGGCG TGCCCATCGA chr3L:6124766-6124886 86 7.24e-06 CCAGAAATTC CCGGGGCG GTGGCTGAAC chr3R:9429089-9429209 48 1.03e-05 GTCATAACTC CAGGGGCG TTGGGCCTTC chr2L:8320186-8320306 86 1.53e-05 TGTGGCTTAA CGGCGGCG ATAAGTATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:490189-490309 2e-06 23_[+3]_89 chrX:9778610-9778730 3.1e-06 69_[+3]_43 chr3R:13686660-13686780 5e-06 111_[+3]_1 chr3L:11092347-11092467 5e-06 40_[+3]_72 chr2L:1428511-1428631 5e-06 91_[+3]_21 chr3L:6124766-6124886 7.2e-06 85_[+3]_27 chr3R:9429089-9429209 1e-05 47_[+3]_65 chr2L:8320186-8320306 1.5e-05 85_[+3]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SKGGGGCG width=8 seqs=8 chr2L:490189-490309 ( 24) CTGGGGCG 1 chrX:9778610-9778730 ( 70) CGGGGGCG 1 chr3R:13686660-13686780 ( 112) GTGGGGCG 1 chr3L:11092347-11092467 ( 41) GTGGGGCG 1 chr2L:1428511-1428631 ( 92) GTGGGGCG 1 chr3L:6124766-6124886 ( 86) CCGGGGCG 1 chr3R:9429089-9429209 ( 48) CAGGGGCG 1 chr2L:8320186-8320306 ( 86) CGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.0e+003 -965 177 107 -965 -133 -55 48 63 -965 -965 248 -965 -965 -55 229 -965 -965 -965 248 -965 -965 -965 248 -965 -965 245 -965 -965 -965 -965 248 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.0e+003 0.000000 0.625000 0.375000 0.000000 0.125000 0.125000 0.250000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKGGGGCG MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TG]GGGGCG -------------------------------------------------------------------------------- Time 20.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGG MEME-4 width = 8 sites = 2 llr = 26 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::::::: probability G aaaa:aaa matrix T :::::::: bits 2.5 **** *** 2.2 **** *** 2.0 **** *** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGAGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13548123-13548243 53 1.85e-06 CTTCAACATC GGGGAGGG GCAAAAAGCT chr3L:11092347-11092467 13 1.85e-06 gGATCTGGAT GGGGAGGG GGAAGAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13548123-13548243 1.9e-06 52_[+4]_60 chr3L:11092347-11092467 1.9e-06 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGG width=8 seqs=2 chr2L:13548123-13548243 ( 53) GGGGAGGG 1 chr3L:11092347-11092467 ( 13) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.6e+003 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 166 -765 -765 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-4 regular expression -------------------------------------------------------------------------------- GGGGAGGG -------------------------------------------------------------------------------- Time 26.99 secs. ******************************************************************************** ******************************************************************************** MOTIF BGCGCCCS MEME-5 width = 8 sites = 6 llr = 70 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3:a:aaa7 probability G 3a:a:::3 matrix T 3::::::: bits 2.5 ****** 2.2 ****** 2.0 ****** 1.7 ****** Relative 1.5 ******* Entropy 1.2 ******* (16.9 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCCCC consensus G G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9778610-9778730 19 1.18e-06 CCTGCCCGCT GGCGCCCC CTACCGCCTG chr2L:7135236-7135356 106 1.18e-06 AGTGTTCGGA GGCGCCCC GCTGAGT chr2L:12004235-12004355 98 2.38e-06 TGCAAACACT CGCGCCCC TGCAAACGCT chr2R:23228077-23228197 34 5.66e-06 ACGCCCCCTC TGCGCCCC TGTTGACTGT chr2L:19582256-19582376 51 6.83e-06 CGGCCACGTC CGCGCCCG CGAGCCCTGG chrX:13563796-13563916 14 8.91e-06 TGCAGCCCGC TGCGCCCG ACGGTCACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9778610-9778730 1.2e-06 18_[+5]_94 chr2L:7135236-7135356 1.2e-06 105_[+5]_7 chr2L:12004235-12004355 2.4e-06 97_[+5]_15 chr2R:23228077-23228197 5.7e-06 33_[+5]_79 chr2L:19582256-19582376 6.8e-06 50_[+5]_62 chrX:13563796-13563916 8.9e-06 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGCGCCCS width=8 seqs=6 chrX:9778610-9778730 ( 19) GGCGCCCC 1 chr2L:7135236-7135356 ( 106) GGCGCCCC 1 chr2L:12004235-12004355 ( 98) CGCGCCCC 1 chr2R:23228077-23228197 ( 34) TGCGCCCC 1 chr2L:19582256-19582376 ( 51) CGCGCCCG 1 chrX:13563796-13563916 ( 14) TGCGCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 3.1e+004 -923 86 90 4 -923 -923 248 -923 -923 245 -923 -923 -923 -923 248 -923 -923 245 -923 -923 -923 245 -923 -923 -923 245 -923 -923 -923 186 90 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+004 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCGCCCS MEME-5 regular expression -------------------------------------------------------------------------------- [CGT]GCGCCC[CG] -------------------------------------------------------------------------------- Time 33.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31610307-31610427 4.21e-01 120 chr3L:20823254-20823374 1.43e-01 87_[+2(3.71e-05)]_25 chr2R:21091881-21092001 9.95e-01 120 chr3L:12755078-12755198 6.53e-02 89_[+1(9.01e-05)]_23 chr3L:3875187-3875307 9.97e-01 120 chrX:7015104-7015224 1.04e-01 107_[+2(1.00e-05)]_5 chr3L:8440866-8440986 1.00e+00 120 chr3L:21317998-21318118 1.64e-02 120 chrX:5084807-5084927 7.42e-01 120 chr3L:1139519-1139639 6.40e-01 120 chr2L:20890038-20890158 4.22e-01 120 chr3L:4413120-4413240 8.93e-02 67_[+2(4.06e-05)]_45 chrX:3928681-3928801 5.47e-01 120 chr3R:9220178-9220298 1.74e-02 120 chr2R:18693260-18693380 9.34e-01 120 chr2L:21263764-21263884 9.87e-01 120 chrX:8677574-8677694 5.22e-01 120 chr2R:9309622-9309742 3.95e-01 120 chr3R:28887877-28887997 5.64e-01 120 chr2L:14372359-14372479 5.16e-01 120 chr3R:18439434-18439554 1.80e-01 33_[+1(2.71e-05)]_79 chr2R:9440367-9440487 9.91e-01 120 chr2L:10277043-10277163 1.50e-02 120 chr3L:5881763-5881883 9.98e-01 120 chr2R:17548614-17548734 1.45e-01 120 chr3R:9870097-9870217 8.41e-01 120 chr2L:5496824-5496944 5.33e-01 120 chrX:7703123-7703243 1.00e+00 120 chr3R:30789503-30789623 9.45e-01 120 chr2L:13515142-13515262 9.99e-01 120 chr3R:14284497-14284617 4.93e-01 120 chrX:263738-263858 7.73e-01 120 chr3R:15242738-15242858 7.81e-01 120 chr3R:21151507-21151627 2.97e-01 25_[+2(4.66e-05)]_87 chrX:15844310-15844430 8.57e-02 120 chrX:12221685-12221805 3.55e-02 48_[+1(2.34e-05)]_64 chrX:3085982-3086102 1.04e-02 41_[+1(2.71e-05)]_71 chr3R:23332743-23332863 1.00e+00 120 chr3R:13446721-13446841 9.36e-01 120 chr3R:16992084-16992204 8.33e-01 120 chr3R:9986192-9986312 3.32e-01 120 chr2L:1428511-1428631 4.07e-04 91_[+3(5.03e-06)]_21 chrX:19298937-19299057 1.00e+00 120 chr2R:23618189-23618309 3.13e-01 120 chrX:3363842-3363962 9.84e-01 120 chr2R:11203052-11203172 8.15e-01 120 chrX:16773147-16773267 2.82e-02 41_[+4(6.54e-05)]_71 chr3R:9630604-9630724 8.16e-04 22_[+4(6.54e-05)]_90 chrX:13563796-13563916 3.01e-03 13_[+5(8.91e-06)]_99 chr3R:5198527-5198647 4.13e-01 120 chr3R:26923969-26924089 9.93e-01 120 chr2L:6788044-6788164 2.46e-02 29_[+2(2.60e-05)]_83 chr3L:14780349-14780469 4.93e-03 19_[+4(6.54e-05)]_93 chr3R:22421727-22421847 5.50e-01 120 chr2R:22063322-22063442 1.51e-01 120 chr3L:350779-350899 1.00e+00 120 chr3L:18870129-18870249 1.15e-01 77_[+5(9.31e-05)]_35 chr3R:10664912-10665032 1.30e-02 120 chr2R:7052495-7052615 9.83e-01 120 chr3R:23118064-23118184 9.67e-01 120 chrX:21241953-21242073 2.84e-01 120 chrX:526655-526775 5.84e-01 120 chrX:15615618-15615738 9.95e-01 120 chr3L:2733307-2733427 6.33e-02 17_[+2(3.58e-06)]_95 chr2R:21076176-21076296 9.98e-01 120 chr2L:8320186-8320306 7.61e-02 85_[+3(1.53e-05)]_27 chr3R:25453156-25453276 3.04e-03 45_[+5(1.71e-05)]_67 chr2R:14130418-14130538 9.98e-01 120 chr3R:9710965-9711085 3.56e-02 120 chr3R:24058181-24058301 4.42e-01 120 chr3R:28329392-28329512 1.00e+00 120 chrX:8690143-8690263 4.29e-01 120 chrX:1854206-1854326 1.91e-02 120 chr3R:28332457-28332577 7.61e-01 120 chr2L:490189-490309 2.09e-03 23_[+3(1.99e-06)]_89 chr3L:15714225-15714345 1.54e-04 11_[+1(1.58e-05)]_55_[+2(1.00e-05)]_\ 38 chr3R:21127579-21127699 4.72e-01 120 chr3R:11458638-11458758 5.44e-01 120 chr3L:18403294-18403414 5.06e-01 120 chrX:8538353-8538473 9.27e-01 120 chr2R:17215957-17216077 6.91e-03 10_[+1(2.91e-05)]_102 chr3R:5683083-5683203 9.97e-01 120 chr3L:9023680-9023800 3.96e-01 120 chrX:9416227-9416347 9.20e-01 120 chr3L:5869751-5869871 1.53e-02 58_[+1(3.54e-05)]_54 chr3R:7346582-7346702 1.98e-01 120 chr3L:9045393-9045513 2.38e-02 120 chr3R:24962608-24962728 8.05e-01 120 chr3R:18198642-18198762 1.28e-03 4_[+2(2.60e-05)]_27_[+1(1.58e-05)]_\ 73 chr3R:11454650-11454770 1.00e-02 87_[+1(3.67e-06)]_25 chr2R:20000513-20000633 9.12e-01 120 chr2L:250933-251053 6.81e-01 120 chr3L:15956581-15956701 4.76e-01 120 chrX:19565817-19565937 9.30e-01 120 chr2R:12172697-12172817 8.79e-01 120 chr2L:4045510-4045630 9.98e-01 120 chr2L:13513837-13513957 7.90e-01 120 chr2L:12004235-12004355 2.88e-03 97_[+5(2.38e-06)]_15 chr3R:26963904-26964024 6.11e-01 120 chr2L:19582256-19582376 4.83e-05 2_[+1(1.58e-05)]_40_[+5(6.83e-06)]_\ 62 chr3L:347073-347193 8.79e-01 120 chrX:17713921-17714041 9.33e-01 120 chr3L:21464438-21464558 4.21e-02 11_[+1(2.34e-05)]_101 chrX:8114546-8114666 1.00e+00 120 chr2R:7773111-7773231 7.96e-01 120 chr2R:10535904-10536024 9.94e-01 120 chr3L:21276384-21276504 9.47e-01 120 chr2R:11296774-11296894 2.61e-02 120 chr3L:6124766-6124886 2.33e-03 85_[+3(7.24e-06)]_27 chrX:3206016-3206136 9.91e-01 120 chr3R:31977640-31977760 1.00e+00 120 chr3L:11092347-11092467 4.67e-06 12_[+4(1.85e-06)]_20_[+3(5.03e-06)]_\ 72 chrX:7332702-7332822 9.53e-01 120 chr3R:27916596-27916716 9.31e-02 120 chr3L:10822672-10822792 3.29e-02 102_[+2(7.35e-05)]_10 chr2R:20838031-20838151 9.96e-01 120 chrX:10263655-10263775 1.00e+00 120 chr3L:13235586-13235706 2.13e-01 120 chr2R:9302966-9303086 7.74e-01 120 chr2R:19997565-19997685 7.74e-04 37_[+5(5.31e-05)]_17_[+5(8.57e-05)]_\ 50 chr2L:20326455-20326575 9.24e-01 120 chrX:11580358-11580478 6.09e-01 120 chr3R:6881675-6881795 3.97e-01 120 chr2R:24768004-24768124 6.42e-03 120 chrX:10232597-10232717 9.99e-01 120 chrX:13214184-13214304 9.51e-01 120 chr3L:18215861-18215981 9.14e-01 120 chr3R:24348888-24349008 6.23e-01 120 chrX:16384082-16384202 9.23e-01 120 chr2L:1648756-1648876 4.98e-01 120 chr3R:7506458-7506578 8.91e-01 120 chr2L:6046046-6046166 5.02e-01 120 chr3R:27407165-27407285 9.95e-01 120 chr2L:13548123-13548243 1.76e-05 6_[+2(2.60e-05)]_38_[+4(1.85e-06)]_\ 60 chr2L:21038907-21039027 8.75e-01 120 chr2L:6488792-6488912 9.74e-01 120 chr3L:2537244-2537364 4.06e-01 120 chrX:8774164-8774284 1.20e-01 8_[+2(2.60e-05)]_104 chr2L:7135236-7135356 5.74e-05 105_[+5(1.18e-06)]_7 chr2R:13942232-13942352 1.20e-01 120 chr3R:20634170-20634290 1.89e-01 120 chr3L:3638741-3638861 8.44e-01 120 chr3R:10332961-10333081 9.46e-01 120 chr3R:6416394-6416514 8.54e-01 120 chr2L:19358196-19358316 1.79e-01 120 chr3L:12749717-12749837 1.48e-01 120 chr2R:10477358-10477478 9.96e-01 120 chr3R:23658114-23658234 4.33e-02 120 chr2R:23228077-23228197 3.39e-04 22_[+5(8.57e-05)]_3_[+5(5.66e-06)]_\ 69_[+2(8.04e-05)]_2 chr3R:9429089-9429209 1.43e-03 47_[+3(1.03e-05)]_20_[+5(8.57e-05)]_\ 37 chr2R:10276443-10276563 3.90e-03 120 chr2L:20287361-20287481 2.49e-04 61_[+5(6.83e-06)]_51 chr2L:7420770-7420890 4.16e-01 120 chr2L:16329179-16329299 2.69e-02 120 chr3L:1579480-1579600 4.25e-01 120 chr3R:25631286-25631406 6.84e-02 120 chr3L:14339007-14339127 9.99e-01 120 chr3R:4437162-4437282 2.03e-01 120 chr2L:8846061-8846181 4.80e-01 120 chr3L:2766637-2766757 9.98e-01 120 chr2L:16535291-16535411 9.87e-01 120 chr2L:481847-481967 2.96e-02 28_[+1(1.78e-05)]_84 chr3R:15973002-15973122 9.93e-01 120 chrX:11338397-11338517 9.93e-01 120 chr2L:10261143-10261263 4.39e-02 6_[+2(3.58e-06)]_106 chr3R:8846300-8846420 7.12e-03 120 chr3R:28832035-28832155 8.26e-01 120 chr3L:10664672-10664792 3.78e-01 120 chr3L:10656935-10657055 6.21e-02 120 chr3R:25193879-25193999 4.16e-01 120 chr2L:13145210-13145330 9.51e-01 120 chr2L:2179529-2179649 9.41e-01 120 chr2R:17422100-17422220 3.30e-02 120 chrX:2743173-2743293 5.65e-01 120 chr2R:22395917-22396037 9.98e-01 120 chr3L:4475086-4475206 3.74e-01 120 chr3R:21828313-21828433 9.79e-01 120 chr3R:18929092-18929212 4.29e-01 120 chr2R:18881972-18882092 1.00e+00 120 chr2L:19870044-19870164 5.09e-01 120 chr3R:13914883-13915003 7.40e-01 120 chr3R:9496853-9496973 1.78e-02 7_[+4(6.54e-05)]_105 chrX:6599365-6599485 2.27e-01 120 chrX:9778610-9778730 1.38e-06 3_[+5(2.13e-05)]_7_[+5(1.18e-06)]_\ 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4.11e-02 33_[+2(3.58e-06)]_79 chr2R:19256007-19256127 9.97e-01 120 chr3L:18029726-18029846 5.85e-02 120 chr3R:25069760-25069880 9.92e-01 120 chrX:15619386-15619506 1.86e-03 34_[+2(3.58e-06)]_78 chr3L:14111547-14111667 2.76e-01 120 chr2L:5907534-5907654 3.40e-01 120 chr3L:16647925-16648045 6.87e-02 120 chr2R:16196780-16196900 3.15e-01 120 chr3L:16782520-16782640 1.00e+00 120 chr2L:13083737-13083857 8.68e-01 120 chr3R:16247723-16247843 9.90e-02 54_[+2(2.60e-05)]_58 chr2L:10527319-10527439 8.94e-01 120 chr3L:545657-545777 8.69e-01 120 chr2R:22395355-22395475 8.19e-01 120 chr3R:5672702-5672822 2.47e-05 71_[+1(3.67e-06)]_41 chr3R:12627844-12627964 9.89e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************