******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/shn.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:7301010-7301130 1.0000 120 chrX:7299778-7299898 1.0000 120 chrX:18282460-18282580 1.0000 120 chr2R:11198878-11198998 1.0000 120 chr2L:552680-552800 1.0000 120 chr2R:11175469-11175589 1.0000 120 chr3R:10605175-10605295 1.0000 120 chr2R:21662092-21662212 1.0000 120 chr3R:8105957-8106077 1.0000 120 chr2R:11178198-11178318 1.0000 120 chr3R:15985837-15985957 1.0000 120 chrX:7307683-7307803 1.0000 120 chr2R:24685228-24685348 1.0000 120 chrX:12546214-12546334 1.0000 120 chr2R:16270764-16270884 1.0000 120 chr2R:7246842-7246962 1.0000 120 chrX:6110004-6110124 1.0000 120 chrX:7317367-7317487 1.0000 120 chr2R:11198251-11198371 1.0000 120 chr2R:11144772-11144892 1.0000 120 chr2R:13507079-13507199 1.0000 120 chrX:18405100-18405220 1.0000 120 chr3L:20518286-20518406 1.0000 120 chr3R:16309395-16309515 1.0000 120 chr2R:24874728-24874848 1.0000 120 chr3L:22407009-22407129 1.0000 120 chr3L:15304624-15304744 1.0000 120 chr2L:16817812-16817932 1.0000 120 chr3R:22526505-22526625 1.0000 120 chrX:3950305-3950425 1.0000 120 chr3R:4962761-4962881 1.0000 120 chr3L:7529430-7529550 1.0000 120 chr3L:4413882-4414002 1.0000 120 chr2R:7250733-7250853 1.0000 120 chr2R:10122604-10122724 1.0000 120 chr2R:15999554-15999674 1.0000 120 chrX:1927984-1928104 1.0000 120 chr2R:11192604-11192724 1.0000 120 chr2R:18172389-18172509 1.0000 120 chr3L:21417298-21417418 1.0000 120 chr3L:9897621-9897741 1.0000 120 chrX:17229865-17229985 1.0000 120 chr2R:14488418-14488538 1.0000 120 chrX:20511632-20511752 1.0000 120 chr2R:11190849-11190969 1.0000 120 chr3L:14971987-14972107 1.0000 120 chr3L:22276158-22276278 1.0000 120 chr2L:309317-309437 1.0000 120 chrX:6820922-6821042 1.0000 120 chr2L:5239675-5239795 1.0000 120 chr3L:9972624-9972744 1.0000 120 chr3R:26892924-26893044 1.0000 120 chr2R:14186663-14186783 1.0000 120 chr2L:10231235-10231355 1.0000 120 chrX:19665975-19666095 1.0000 120 chrX:1880385-1880505 1.0000 120 chrX:5086026-5086146 1.0000 120 chr3R:23817633-23817753 1.0000 120 chr3L:14150408-14150528 1.0000 120 chr2R:16159998-16160118 1.0000 120 chr2R:13450200-13450320 1.0000 120 chrX:18837247-18837367 1.0000 120 chr2L:2580111-2580231 1.0000 120 chrX:1370115-1370235 1.0000 120 chr3L:6861322-6861442 1.0000 120 chrX:11149280-11149400 1.0000 120 chr2R:8603106-8603226 1.0000 120 chr3R:27071039-27071159 1.0000 120 chr2R:6133388-6133508 1.0000 120 chr3R:13016286-13016406 1.0000 120 chr2L:13783985-13784105 1.0000 120 chr3L:6719670-6719790 1.0000 120 chr3L:21014520-21014640 1.0000 120 chr3L:3350834-3350954 1.0000 120 chr2L:9779197-9779317 1.0000 120 chr2L:13291067-13291187 1.0000 120 chr2R:22545981-22546101 1.0000 120 chr3L:1385908-1386028 1.0000 120 chr3L:9461720-9461840 1.0000 120 chrX:7304878-7304998 1.0000 120 chr2R:11204589-11204709 1.0000 120 chr2L:7149087-7149207 1.0000 120 chr2R:22683230-22683350 1.0000 120 chr2R:11181225-11181345 1.0000 120 chr3L:15235346-15235466 1.0000 120 chr2L:20889984-20890104 1.0000 120 chr3R:19164959-19165079 1.0000 120 chr2L:10736083-10736203 1.0000 120 chr3R:20833883-20834003 1.0000 120 chr2R:18273454-18273574 1.0000 120 chrX:3538948-3539068 1.0000 120 chr3R:31805369-31805489 1.0000 120 chrX:11715474-11715594 1.0000 120 chrX:2184696-2184816 1.0000 120 chr2L:3477330-3477450 1.0000 120 chr3L:779167-779287 1.0000 120 chr3R:13383003-13383123 1.0000 120 chr2L:6795007-6795127 1.0000 120 chr2R:22450509-22450629 1.0000 120 chrX:6091119-6091239 1.0000 120 chr2R:16150820-16150940 1.0000 120 chr3R:5282873-5282993 1.0000 120 chr3R:21850274-21850394 1.0000 120 chr3L:3164985-3165105 1.0000 120 chrX:2037041-2037161 1.0000 120 chr3R:25168327-25168447 1.0000 120 chr3L:2532058-2532178 1.0000 120 chr3L:13922360-13922480 1.0000 120 chr3R:16441649-16441769 1.0000 120 chrX:4117462-4117582 1.0000 120 chr2L:5724725-5724845 1.0000 120 chr3L:5809840-5809960 1.0000 120 chrX:14213595-14213715 1.0000 120 chr3R:10888656-10888776 1.0000 120 chrX:19495376-19495496 1.0000 120 chr2R:4012802-4012922 1.0000 120 chr3L:9898542-9898662 1.0000 120 chrX:9658187-9658307 1.0000 120 chrX:19348953-19349073 1.0000 120 chr3L:4353892-4354012 1.0000 120 chrX:8491797-8491917 1.0000 120 chr3L:1546659-1546779 1.0000 120 chr2R:17698951-17699071 1.0000 120 chr2R:21527380-21527500 1.0000 120 chrX:18239446-18239566 1.0000 120 chr2R:22197246-22197366 1.0000 120 chr2L:3776048-3776168 1.0000 120 chrX:19146446-19146566 1.0000 120 chrX:8560255-8560375 1.0000 120 chr2R:20641563-20641683 1.0000 120 chrX:19107013-19107133 1.0000 120 chr3R:24626367-24626487 1.0000 120 chr3L:21516868-21516988 1.0000 120 chr3R:22464734-22464854 1.0000 120 chr3R:13016503-13016623 1.0000 120 chrX:11137671-11137791 1.0000 120 chr3L:8440858-8440978 1.0000 120 chrX:10463203-10463323 1.0000 120 chrX:618758-618878 1.0000 120 chr3L:6495534-6495654 1.0000 120 chr3R:9055245-9055365 1.0000 120 chr3L:15565946-15566066 1.0000 120 chrX:13333052-13333172 1.0000 120 chr3L:16149953-16150073 1.0000 120 chr2R:12274346-12274466 1.0000 120 chrX:15910122-15910242 1.0000 120 chr2R:11204382-11204502 1.0000 120 chr3L:1189202-1189322 1.0000 120 chrX:15739055-15739175 1.0000 120 chr3L:7435348-7435468 1.0000 120 chr4:867059-867179 1.0000 120 chr3L:15098098-15098218 1.0000 120 chr3R:22447372-22447492 1.0000 120 chr2R:7636681-7636801 1.0000 120 chrX:18774858-18774978 1.0000 120 chrX:6663299-6663419 1.0000 120 chr2L:2749396-2749516 1.0000 120 chrX:617557-617677 1.0000 120 chr2R:16202882-16203002 1.0000 120 chr2R:24046762-24046882 1.0000 120 chr2L:7293618-7293738 1.0000 120 chr3L:6220323-6220443 1.0000 120 chrX:19308173-19308293 1.0000 120 chr3R:15139516-15139636 1.0000 120 chrX:14602722-14602842 1.0000 120 chr2L:6956936-6957056 1.0000 120 chr2R:12870195-12870315 1.0000 120 chrX:16683943-16684063 1.0000 120 chr2L:3587431-3587551 1.0000 120 chr3L:10691204-10691324 1.0000 120 chr3R:23157820-23157940 1.0000 120 chr3R:20829262-20829382 1.0000 120 chr3L:20389111-20389231 1.0000 120 chr2R:14645114-14645234 1.0000 120 chr2L:6339669-6339789 1.0000 120 chr3L:5926102-5926222 1.0000 120 chr3R:14278578-14278698 1.0000 120 chr3R:20735529-20735649 1.0000 120 chr3R:4429016-4429136 1.0000 120 chr2R:8650505-8650625 1.0000 120 chr2R:21535560-21535680 1.0000 120 chr3R:10648939-10649059 1.0000 120 chr3L:21251425-21251545 1.0000 120 chrX:8141439-8141559 1.0000 120 chr2L:21619237-21619357 1.0000 120 chr2R:16097173-16097293 1.0000 120 chr2R:5122222-5122342 1.0000 120 chr2L:14094779-14094899 1.0000 120 chr2L:15039397-15039517 1.0000 120 chr3R:14714243-14714363 1.0000 120 chr3L:10845191-10845311 1.0000 120 chr2R:18835093-18835213 1.0000 120 chr3R:24630105-24630225 1.0000 120 chr3L:14672774-14672894 1.0000 120 chr3R:16573927-16574047 1.0000 120 chr3L:11429747-11429867 1.0000 120 chr2L:18377284-18377404 1.0000 120 chrX:8863511-8863631 1.0000 120 chr4:1030983-1031103 1.0000 120 chr3R:12369256-12369376 1.0000 120 chr2L:8738331-8738451 1.0000 120 chr3R:13837889-13838009 1.0000 120 chr2L:7049026-7049146 1.0000 120 chrX:17510668-17510788 1.0000 120 chrX:7000968-7001088 1.0000 120 chr3R:17540151-17540271 1.0000 120 chr2R:20906658-20906778 1.0000 120 chr2L:283286-283406 1.0000 120 chr3R:5613244-5613364 1.0000 120 chr3L:8546419-8546539 1.0000 120 chr2L:16816090-16816210 1.0000 120 chr3L:5932588-5932708 1.0000 120 chr3L:22065811-22065931 1.0000 120 chr3R:27245344-27245464 1.0000 120 chrX:13128118-13128238 1.0000 120 chr3L:4413217-4413337 1.0000 120 chr3R:29493420-29493540 1.0000 120 chrX:9193802-9193922 1.0000 120 chr3R:5264568-5264688 1.0000 120 chr3L:9456105-9456225 1.0000 120 chrX:7945536-7945656 1.0000 120 chrX:10488024-10488144 1.0000 120 chr3L:19897284-19897404 1.0000 120 chr3R:5588314-5588434 1.0000 120 chrX:5665921-5666041 1.0000 120 chr2R:10103808-10103928 1.0000 120 chr2L:14359023-14359143 1.0000 120 chr2R:13502332-13502452 1.0000 120 chr2R:9834905-9835025 1.0000 120 chr3R:26566971-26567091 1.0000 120 chr3R:21112524-21112644 1.0000 120 chr2L:3778875-3778995 1.0000 120 chr3R:30305105-30305225 1.0000 120 chrX:16834337-16834457 1.0000 120 chr3R:31060366-31060486 1.0000 120 chr3L:3770994-3771114 1.0000 120 chr2R:17062648-17062768 1.0000 120 chr2R:17161022-17161142 1.0000 120 chr3L:1350584-1350704 1.0000 120 chr3L:27267112-27267232 1.0000 120 chr2R:7815063-7815183 1.0000 120 chr3L:5857099-5857219 1.0000 120 chr3L:13929281-13929401 1.0000 120 chr2L:15629982-15630102 1.0000 120 chr2L:20822848-20822968 1.0000 120 chr3R:9065079-9065199 1.0000 120 chr3L:11820048-11820168 1.0000 120 chr3L:699381-699501 1.0000 120 chr3R:29877055-29877175 1.0000 120 chr3L:16769983-16770103 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_shn/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/shn.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.217 G 0.219 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.217 G 0.219 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTTGCCAV MEME-1 width = 8 sites = 20 llr = 194 E-value = 7.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::a3 pos.-specific C :3::aa:3 probability G a::a:::4 matrix T :7a::::: bits 2.2 * *** 2.0 * *** 1.8 * ***** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******* (14.0 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGCCAG consensus C A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13502332-13502452 26 1.13e-05 GCGTGGCAGC GTTGCCAG CAGCTTGCGA chr2R:24046762-24046882 48 1.13e-05 ACAGGTTAGG GTTGCCAG GCGCCGGCAA chrX:11715474-11715594 18 1.13e-05 TGTTGTGCCA GTTGCCAG CGACAGCGGC chr3L:7529430-7529550 8 1.13e-05 ATCCAGG GTTGCCAG GGGCGTGGGT chr3R:16309395-16309515 101 1.13e-05 ACGAGGCCTT GTTGCCAG GTATATATTA chr2R:13507079-13507199 14 1.13e-05 ATGGCGCTGC GTTGCCAG ACAGCTTGTT chr2L:21619237-21619357 35 2.25e-05 gttgactcat gttgccac gcccactcta chrX:10463203-10463323 34 2.25e-05 ATGCGGCGGC GTTGCCAC CCGTGTGCGA chr3L:9898542-9898662 91 2.25e-05 CTGCCAGGGA GTTGCCAC ATCGTTGTAC chrX:7299778-7299898 8 2.25e-05 CCGCAAC GTTGCCAC TTTTCATTGA chr3R:14278578-14278698 74 4.53e-05 AAACGCCATA GCTGCCAG CACTGGCTTA chr2R:14645114-14645234 113 4.53e-05 CAGCTTTTTT GCTGCCAG chr2R:16202882-16203002 43 4.53e-05 AGCGATCAGT GTTGCCAA TTTAGCTTTC chr3L:9461720-9461840 34 4.53e-05 GCCCGCCAGG GTTGCCAA CCTCCTAAAC chrX:3950305-3950425 4 4.53e-05 CCT GTTGCCAA GCTGCATTTT chr2R:24685228-24685348 20 4.53e-05 GCCGAAACCT GTTGCCAA TAATCGAAGT chr2L:13291067-13291187 76 5.38e-05 TGGAGGATCT GCTGCCAC GGGGGATCTC chr3R:13016286-13016406 105 5.38e-05 ATTTATAATA GCTGCCAC AACTGCTG chr3L:14672774-14672894 102 6.45e-05 AACAACAACT GCTGCCAA CGCAACGTGA chrX:12546214-12546334 45 6.45e-05 GGCAAAAGTC GCTGCCAA AACGCGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13502332-13502452 1.1e-05 25_[+1]_87 chr2R:24046762-24046882 1.1e-05 47_[+1]_65 chrX:11715474-11715594 1.1e-05 17_[+1]_95 chr3L:7529430-7529550 1.1e-05 7_[+1]_105 chr3R:16309395-16309515 1.1e-05 100_[+1]_12 chr2R:13507079-13507199 1.1e-05 13_[+1]_99 chr2L:21619237-21619357 2.3e-05 34_[+1]_78 chrX:10463203-10463323 2.3e-05 33_[+1]_79 chr3L:9898542-9898662 2.3e-05 90_[+1]_22 chrX:7299778-7299898 2.3e-05 7_[+1]_105 chr3R:14278578-14278698 4.5e-05 73_[+1]_39 chr2R:14645114-14645234 4.5e-05 112_[+1] chr2R:16202882-16203002 4.5e-05 42_[+1]_70 chr3L:9461720-9461840 4.5e-05 33_[+1]_79 chrX:3950305-3950425 4.5e-05 3_[+1]_109 chr2R:24685228-24685348 4.5e-05 19_[+1]_93 chr2L:13291067-13291187 5.4e-05 75_[+1]_37 chr3R:13016286-13016406 5.4e-05 104_[+1]_8 chr3L:14672774-14672894 6.5e-05 101_[+1]_11 chrX:12546214-12546334 6.5e-05 44_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGCCAV width=8 seqs=20 chr2R:13502332-13502452 ( 26) GTTGCCAG 1 chr2R:24046762-24046882 ( 48) GTTGCCAG 1 chrX:11715474-11715594 ( 18) GTTGCCAG 1 chr3L:7529430-7529550 ( 8) GTTGCCAG 1 chr3R:16309395-16309515 ( 101) GTTGCCAG 1 chr2R:13507079-13507199 ( 14) GTTGCCAG 1 chr2L:21619237-21619357 ( 35) GTTGCCAC 1 chrX:10463203-10463323 ( 34) GTTGCCAC 1 chr3L:9898542-9898662 ( 91) GTTGCCAC 1 chrX:7299778-7299898 ( 8) GTTGCCAC 1 chr3R:14278578-14278698 ( 74) GCTGCCAG 1 chr2R:14645114-14645234 ( 113) GCTGCCAG 1 chr2R:16202882-16203002 ( 43) GTTGCCAA 1 chr3L:9461720-9461840 ( 34) GTTGCCAA 1 chrX:3950305-3950425 ( 4) GTTGCCAA 1 chr2R:24685228-24685348 ( 20) GTTGCCAA 1 chr2L:13291067-13291187 ( 76) GCTGCCAC 1 chr3R:13016286-13016406 ( 105) GCTGCCAC 1 chr3L:14672774-14672894 ( 102) GCTGCCAA 1 chrX:12546214-12546334 ( 45) GCTGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 7.1e+000 -1097 -1097 219 -1097 -1097 46 -1097 128 -1097 -1097 -1097 180 -1097 -1097 219 -1097 -1097 220 -1097 -1097 -1097 220 -1097 -1097 186 -1097 -1097 -1097 12 46 87 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 7.1e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.300000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCCAV MEME-1 regular expression -------------------------------------------------------------------------------- G[TC]TGCCA[GAC] -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CRGCGGCA MEME-2 width = 8 sites = 17 llr = 166 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4:::::8 pos.-specific C 8:2a::a: probability G 268:aa:2 matrix T :::::::: bits 2.2 **** 2.0 **** 1.8 **** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCGGCA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20822848-20822968 1 6.49e-06 . CGGCGGCA GCAGACGTAA chr2L:2749396-2749516 58 6.49e-06 AAGCAACCAC CGGCGGCA CTCGGCACTG chrX:6091119-6091239 90 6.49e-06 GCGATTAAGG CGGCGGCA CTCCCCCTCT chr3L:10691204-10691324 33 1.47e-05 agtagcagtg cagcggca TCCTTAACGA chrX:19308173-19308293 98 1.47e-05 ACCCGATTAT CAGCGGCA AATATGGGCA chr3L:1546659-1546779 113 1.47e-05 ACGATTTCCC CAGCGGCA chrX:12546214-12546334 31 1.47e-05 ATGACGAAAG CAGCGGCA AAAGTCGCTG chr2R:13450200-13450320 32 1.98e-05 CTGTCGATTT CGGCGGCG CCATTCTCCT chrX:6110004-6110124 41 1.98e-05 ACTTGTTTAT CGGCGGCG TCTCTCGCGA chr2R:17062648-17062768 52 3.93e-05 GAATAACTAT CGCCGGCA TATATCGATG chrX:8141439-8141559 10 3.93e-05 CATGAGCGT CGCCGGCA AGAGGGGTAC chr2R:24046762-24046882 57 3.93e-05 GGTTGCCAGG CGCCGGCA AAGTATCAAC chr2R:7636681-7636801 42 3.93e-05 TGGGCGATTT GGGCGGCA AAACGCCTGT chrX:18239446-18239566 26 3.93e-05 GCATACTTTA GGGCGGCA AGTGCTGGCT chrX:11715474-11715594 29 3.93e-05 TTGCCAGCGA CAGCGGCG TCGTGTCATT chrX:7317367-7317487 54 3.93e-05 gtgagcgaga cagcggcg agaaagagag chr3L:7435348-7435468 13 5.56e-05 acgtgagcga gagcgGCA CTGGCACAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20822848-20822968 6.5e-06 [+2]_112 chr2L:2749396-2749516 6.5e-06 57_[+2]_55 chrX:6091119-6091239 6.5e-06 89_[+2]_23 chr3L:10691204-10691324 1.5e-05 32_[+2]_80 chrX:19308173-19308293 1.5e-05 97_[+2]_15 chr3L:1546659-1546779 1.5e-05 112_[+2] chrX:12546214-12546334 1.5e-05 30_[+2]_82 chr2R:13450200-13450320 2e-05 31_[+2]_81 chrX:6110004-6110124 2e-05 40_[+2]_72 chr2R:17062648-17062768 3.9e-05 51_[+2]_61 chrX:8141439-8141559 3.9e-05 9_[+2]_103 chr2R:24046762-24046882 3.9e-05 56_[+2]_56 chr2R:7636681-7636801 3.9e-05 41_[+2]_71 chrX:18239446-18239566 3.9e-05 25_[+2]_87 chrX:11715474-11715594 3.9e-05 28_[+2]_84 chrX:7317367-7317487 3.9e-05 53_[+2]_59 chr3L:7435348-7435468 5.6e-05 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRGCGGCA width=8 seqs=17 chr2L:20822848-20822968 ( 1) CGGCGGCA 1 chr2L:2749396-2749516 ( 58) CGGCGGCA 1 chrX:6091119-6091239 ( 90) CGGCGGCA 1 chr3L:10691204-10691324 ( 33) CAGCGGCA 1 chrX:19308173-19308293 ( 98) CAGCGGCA 1 chr3L:1546659-1546779 ( 113) CAGCGGCA 1 chrX:12546214-12546334 ( 31) CAGCGGCA 1 chr2R:13450200-13450320 ( 32) CGGCGGCG 1 chrX:6110004-6110124 ( 41) CGGCGGCG 1 chr2R:17062648-17062768 ( 52) CGCCGGCA 1 chrX:8141439-8141559 ( 10) CGCCGGCA 1 chr2R:24046762-24046882 ( 57) CGCCGGCA 1 chr2R:7636681-7636801 ( 42) GGGCGGCA 1 chrX:18239446-18239566 ( 26) GGGCGGCA 1 chrX:11715474-11715594 ( 29) CAGCGGCG 1 chrX:7317367-7317487 ( 54) CAGCGGCG 1 chr3L:7435348-7435468 ( 13) GAGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 2.6e+003 -1073 192 -31 -1073 58 -1073 143 -1073 -1073 -30 191 -1073 -1073 220 -1073 -1073 -1073 -1073 219 -1073 -1073 -1073 219 -1073 -1073 220 -1073 -1073 147 -1073 11 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.6e+003 0.000000 0.823529 0.176471 0.000000 0.411765 0.000000 0.588235 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.000000 0.235294 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGCGGCA MEME-2 regular expression -------------------------------------------------------------------------------- C[GA]GCGGC[AG] -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF DTGGCGCB MEME-3 width = 8 sites = 21 llr = 195 E-value = 3.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 1:::a:a4 probability G 4:aa:a:3 matrix T 2a:::::3 bits 2.2 ***** 2.0 ***** 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (13.4 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel GTGGCGCC consensus A G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16573927-16574047 110 6.77e-06 TCTGCACCAG GTGGCGCC ACT chrX:7317367-7317487 90 6.77e-06 gggagcgaga gTGGCGCC AAACAGTCTG chrX:6110004-6110124 99 6.77e-06 CGGACGCCAG GTGGCGCC ACACATGTAG chr3R:9055245-9055365 40 1.36e-05 TCACTCAAAC GTGGCGCG CTGGGTATCT chr2R:20906658-20906778 97 2.21e-05 CCAACGGTAG ATGGCGCC AGTGCAACAT chr2R:12274346-12274466 62 2.21e-05 TTGCCGAAAG ATGGCGCC CATGGCGCAC chr3R:15985837-15985957 48 2.21e-05 TGCGGCGGAG ATGGCGCC TGTGGGGCTG chr2R:7815063-7815183 83 4.00e-05 TTCTCTAAAA TTGGCGCC TAATTCTATT chr2R:21535560-21535680 44 4.00e-05 TTTACGCTAG GTGGCGCT TGGCAGGACT chr2R:8650505-8650625 22 4.00e-05 GGACGCCCAA GTGGCGCT CGATCAGATA chr3R:20735529-20735649 42 4.00e-05 TTATCGATAT GTGGCGCT GCTGTGCGAC chrX:18239446-18239566 95 4.00e-05 AAGCCGCTAG GTGGCGCT ATGCAGTCAA chrX:1927984-1928104 72 4.00e-05 ACCGTTTCGT TTGGCGCC AGTGCTGGCG chr2R:15999554-15999674 47 4.67e-05 GCGCGACCGA CTGGCGCC CAATTCGCTC chr2L:6956936-6957056 85 6.43e-05 CAATCAGTTT TTGGCGCG CCAAAGCAGC chr2R:16270764-16270884 49 6.43e-05 GCATGACTCA TTGGCGCG CGGACAGGGG chr2R:11175469-11175589 28 6.43e-05 TTCAGTTGCG TTGGCGCG CGCGCTGCAA chrX:19495376-19495496 64 8.24e-05 ATTCAATCGA CTGGCGCG GAACAGCAAT chr2L:13291067-13291187 98 8.24e-05 GATCTCAGCA ATGGCGCT ACGCACAGCA chr3L:14150408-14150528 86 8.24e-05 GACAGACTGT CTGGCGCG TCGGCGTCTG chr2R:13507079-13507199 4 8.24e-05 CCC ATGGCGCT GCGTTGCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16573927-16574047 6.8e-06 109_[+3]_3 chrX:7317367-7317487 6.8e-06 89_[+3]_23 chrX:6110004-6110124 6.8e-06 98_[+3]_14 chr3R:9055245-9055365 1.4e-05 39_[+3]_73 chr2R:20906658-20906778 2.2e-05 96_[+3]_16 chr2R:12274346-12274466 2.2e-05 61_[+3]_51 chr3R:15985837-15985957 2.2e-05 47_[+3]_65 chr2R:7815063-7815183 4e-05 82_[+3]_30 chr2R:21535560-21535680 4e-05 43_[+3]_69 chr2R:8650505-8650625 4e-05 21_[+3]_91 chr3R:20735529-20735649 4e-05 41_[+3]_71 chrX:18239446-18239566 4e-05 94_[+3]_18 chrX:1927984-1928104 4e-05 71_[+3]_41 chr2R:15999554-15999674 4.7e-05 46_[+3]_66 chr2L:6956936-6957056 6.4e-05 84_[+3]_28 chr2R:16270764-16270884 6.4e-05 48_[+3]_64 chr2R:11175469-11175589 6.4e-05 27_[+3]_85 chrX:19495376-19495496 8.2e-05 63_[+3]_49 chr2L:13291067-13291187 8.2e-05 97_[+3]_15 chr3L:14150408-14150528 8.2e-05 85_[+3]_27 chr2R:13507079-13507199 8.2e-05 3_[+3]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTGGCGCB width=8 seqs=21 chr3R:16573927-16574047 ( 110) GTGGCGCC 1 chrX:7317367-7317487 ( 90) GTGGCGCC 1 chrX:6110004-6110124 ( 99) GTGGCGCC 1 chr3R:9055245-9055365 ( 40) GTGGCGCG 1 chr2R:20906658-20906778 ( 97) ATGGCGCC 1 chr2R:12274346-12274466 ( 62) ATGGCGCC 1 chr3R:15985837-15985957 ( 48) ATGGCGCC 1 chr2R:7815063-7815183 ( 83) TTGGCGCC 1 chr2R:21535560-21535680 ( 44) GTGGCGCT 1 chr2R:8650505-8650625 ( 22) GTGGCGCT 1 chr3R:20735529-20735649 ( 42) GTGGCGCT 1 chrX:18239446-18239566 ( 95) GTGGCGCT 1 chrX:1927984-1928104 ( 72) TTGGCGCC 1 chr2R:15999554-15999674 ( 47) CTGGCGCC 1 chr2L:6956936-6957056 ( 85) TTGGCGCG 1 chr2R:16270764-16270884 ( 49) TTGGCGCG 1 chr2R:11175469-11175589 ( 28) TTGGCGCG 1 chrX:19495376-19495496 ( 64) CTGGCGCG 1 chr2L:13291067-13291187 ( 98) ATGGCGCT 1 chr3L:14150408-14150528 ( 86) CTGGCGCG 1 chr2R:13507079-13507199 ( 4) ATGGCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 3.9e+002 -21 -61 80 -27 -1104 -1104 -1104 180 -1104 -1104 219 -1104 -1104 -1104 219 -1104 -1104 220 -1104 -1104 -1104 -1104 219 -1104 -1104 220 -1104 -1104 -1104 98 39 -1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.9e+002 0.238095 0.142857 0.380952 0.238095 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.285714 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGCGCB MEME-3 regular expression -------------------------------------------------------------------------------- [GAT]TGGCGC[CGT] -------------------------------------------------------------------------------- Time 19.89 secs. ******************************************************************************** ******************************************************************************** MOTIF WATCGATA MEME-4 width = 8 sites = 13 llr = 130 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4a:::a:a pos.-specific C :::a:::: probability G ::::a::: matrix T 6:a:::a: bits 2.2 ** 2.0 ** 1.8 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15039397-15039517 98 2.39e-05 CCTATCGGAC TATCGATA CAACATCAAC chr3R:20735529-20735649 33 2.39e-05 AAGGAATTCT TATCGATA TGTGGCGCTG chr3R:23157820-23157940 86 2.39e-05 AGTCGATTGA TATCGATA ATTTTTGTCG chr2L:6956936-6957056 37 2.39e-05 CCCTGGCAGA TATCGATA GGCCCATCGA chrX:617557-617677 44 2.39e-05 CGACGGGGCC TATCGATA TACCCGATAA chr2R:4012802-4012922 26 2.39e-05 ttttctgcga tatcgata aatttaatga chr3L:2532058-2532178 92 2.39e-05 TTTATTGCTT TATCGATA ATACTAAGGA chr2L:9779197-9779317 83 2.39e-05 GGAAACTTtc tatcgata ttccagaaaa chr3R:9065079-9065199 23 4.67e-05 TCCGTACTGT AATCGATA ACATGTTTAC chrX:5665921-5666041 81 4.67e-05 CCGCAATGGC AATCGATA ACTGTACGAC chr3R:5613244-5613364 36 4.67e-05 GTTTACTTTT AATCGATA GACAAAAACA chr2L:283286-283406 8 4.67e-05 AAAGCCA AATCGATA TGATAGCGCC chr3R:13016503-13016623 18 4.67e-05 TATCTTATCT AATCGATA TCCTAATCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15039397-15039517 2.4e-05 97_[+4]_15 chr3R:20735529-20735649 2.4e-05 32_[+4]_80 chr3R:23157820-23157940 2.4e-05 85_[+4]_27 chr2L:6956936-6957056 2.4e-05 36_[+4]_76 chrX:617557-617677 2.4e-05 43_[+4]_69 chr2R:4012802-4012922 2.4e-05 25_[+4]_87 chr3L:2532058-2532178 2.4e-05 91_[+4]_21 chr2L:9779197-9779317 2.4e-05 82_[+4]_30 chr3R:9065079-9065199 4.7e-05 22_[+4]_90 chrX:5665921-5666041 4.7e-05 80_[+4]_32 chr3R:5613244-5613364 4.7e-05 35_[+4]_77 chr2L:283286-283406 4.7e-05 7_[+4]_105 chr3R:13016503-13016623 4.7e-05 17_[+4]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATCGATA width=8 seqs=13 chr2L:15039397-15039517 ( 98) TATCGATA 1 chr3R:20735529-20735649 ( 33) TATCGATA 1 chr3R:23157820-23157940 ( 86) TATCGATA 1 chr2L:6956936-6957056 ( 37) TATCGATA 1 chrX:617557-617677 ( 44) TATCGATA 1 chr2R:4012802-4012922 ( 26) TATCGATA 1 chr3L:2532058-2532178 ( 92) TATCGATA 1 chr2L:9779197-9779317 ( 83) TATCGATA 1 chr3R:9065079-9065199 ( 23) AATCGATA 1 chrX:5665921-5666041 ( 81) AATCGATA 1 chr3R:5613244-5613364 ( 36) AATCGATA 1 chr2L:283286-283406 ( 8) AATCGATA 1 chr3R:13016503-13016623 ( 18) AATCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 4.3e+004 48 -1035 -1035 109 186 -1035 -1035 -1035 -1035 -1035 -1035 180 -1035 220 -1035 -1035 -1035 -1035 219 -1035 186 -1035 -1035 -1035 -1035 -1035 -1035 180 186 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.3e+004 0.384615 0.000000 0.000000 0.615385 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACAGTG MEME-5 width = 8 sites = 7 llr = 77 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:a::: pos.-specific C :a:a::1: probability G a::::a:a matrix T ::::::9: bits 2.2 ** * * * 2.0 ** * * * 1.8 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (16.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACAGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11820048-11820168 24 1.09e-05 GCACGAGTCG GCACAGTG GCTGCAAAAA chr3L:6220323-6220443 21 1.09e-05 TTACTGACTT GCACAGTG AGGCAAGTCC chr3L:7435348-7435468 24 1.09e-05 agcgGCACTG GCACAGTG CAGTCCCATA chr3R:19164959-19165079 55 1.09e-05 CCGCGCTCAC GCACAGTG GTCGCTTTTG chr3R:23817633-23817753 39 1.09e-05 ACTTCCATCG GCACAGTG GAGACCGCAA chr3L:22276158-22276278 39 1.09e-05 CACTGTGCGG GCACAGTG GGCCTCATTG chr2L:552680-552800 77 1.90e-05 CGTCCATTGA GCACAGCG ATCGTCGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11820048-11820168 1.1e-05 23_[+5]_89 chr3L:6220323-6220443 1.1e-05 20_[+5]_92 chr3L:7435348-7435468 1.1e-05 23_[+5]_89 chr3R:19164959-19165079 1.1e-05 54_[+5]_58 chr3R:23817633-23817753 1.1e-05 38_[+5]_74 chr3L:22276158-22276278 1.1e-05 38_[+5]_74 chr2L:552680-552800 1.9e-05 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACAGTG width=8 seqs=7 chr3L:11820048-11820168 ( 24) GCACAGTG 1 chr3L:6220323-6220443 ( 21) GCACAGTG 1 chr3L:7435348-7435468 ( 24) GCACAGTG 1 chr3R:19164959-19165079 ( 55) GCACAGTG 1 chr3R:23817633-23817753 ( 39) GCACAGTG 1 chr3L:22276158-22276278 ( 39) GCACAGTG 1 chr2L:552680-552800 ( 77) GCACAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 2.8e+004 -945 -945 219 -945 -945 220 -945 -945 186 -945 -945 -945 -945 220 -945 -945 186 -945 -945 -945 -945 -945 219 -945 -945 -60 -945 157 -945 -945 219 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACAGTG MEME-5 regular expression -------------------------------------------------------------------------------- GCACAGTG -------------------------------------------------------------------------------- Time 32.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7301010-7301130 3.60e-01 120 chrX:7299778-7299898 5.56e-02 7_[+1(2.25e-05)]_105 chrX:18282460-18282580 1.66e-01 120 chr2R:11198878-11198998 4.67e-01 120 chr2L:552680-552800 1.53e-02 76_[+5(1.90e-05)]_36 chr2R:11175469-11175589 6.50e-02 27_[+3(6.43e-05)]_85 chr3R:10605175-10605295 6.43e-02 120 chr2R:21662092-21662212 6.91e-01 120 chr3R:8105957-8106077 5.21e-02 120 chr2R:11178198-11178318 2.23e-01 120 chr3R:15985837-15985957 6.51e-03 47_[+3(2.21e-05)]_65 chrX:7307683-7307803 3.56e-01 120 chr2R:24685228-24685348 4.48e-02 19_[+1(4.53e-05)]_93 chrX:12546214-12546334 4.24e-04 30_[+2(1.47e-05)]_6_[+1(6.45e-05)]_\ 68 chr2R:16270764-16270884 4.13e-02 48_[+3(6.43e-05)]_64 chr2R:7246842-7246962 7.19e-02 21_[+2(6.59e-05)]_20_[+2(6.59e-05)]_\ 63 chrX:6110004-6110124 5.65e-04 40_[+2(1.98e-05)]_50_[+3(6.77e-06)]_\ 14 chrX:7317367-7317487 8.81e-04 53_[+2(3.93e-05)]_28_[+3(6.77e-06)]_\ 23 chr2R:11198251-11198371 1.53e-01 120 chr2R:11144772-11144892 6.53e-01 120 chr2R:13507079-13507199 2.28e-03 3_[+3(8.24e-05)]_2_[+1(1.13e-05)]_\ 99 chrX:18405100-18405220 3.09e-02 111_[+5(9.46e-05)]_1 chr3L:20518286-20518406 8.32e-01 120 chr3R:16309395-16309515 3.64e-02 100_[+1(1.13e-05)]_12 chr2R:24874728-24874848 6.79e-01 120 chr3L:22407009-22407129 4.03e-01 120 chr3L:15304624-15304744 3.46e-01 120 chr2L:16817812-16817932 6.22e-01 120 chr3R:22526505-22526625 8.05e-01 120 chrX:3950305-3950425 1.08e-01 3_[+1(4.53e-05)]_109 chr3R:4962761-4962881 2.59e-04 [+5(3.77e-05)]_58_[+2(6.59e-05)]_46 chr3L:7529430-7529550 1.42e-02 7_[+1(1.13e-05)]_105 chr3L:4413882-4414002 3.24e-02 120 chr2R:7250733-7250853 7.72e-01 120 chr2R:10122604-10122724 8.28e-01 120 chr2R:15999554-15999674 4.42e-02 46_[+3(4.67e-05)]_66 chrX:1927984-1928104 1.05e-02 71_[+3(4.00e-05)]_41 chr2R:11192604-11192724 9.97e-01 120 chr2R:18172389-18172509 9.24e-01 120 chr3L:21417298-21417418 8.11e-01 120 chr3L:9897621-9897741 9.83e-01 120 chrX:17229865-17229985 9.59e-01 120 chr2R:14488418-14488538 7.65e-02 120 chrX:20511632-20511752 6.09e-01 120 chr2R:11190849-11190969 8.69e-02 120 chr3L:14971987-14972107 1.41e-01 120 chr3L:22276158-22276278 4.23e-03 38_[+5(1.09e-05)]_74 chr2L:309317-309437 4.94e-01 120 chrX:6820922-6821042 1.14e-01 120 chr2L:5239675-5239795 4.09e-01 120 chr3L:9972624-9972744 9.97e-01 120 chr3R:26892924-26893044 6.73e-01 120 chr2R:14186663-14186783 5.73e-03 71_[+3(8.24e-05)]_41 chr2L:10231235-10231355 9.44e-01 120 chrX:19665975-19666095 2.91e-01 120 chrX:1880385-1880505 8.90e-01 120 chrX:5086026-5086146 5.07e-01 120 chr3R:23817633-23817753 5.51e-03 38_[+5(1.09e-05)]_74 chr3L:14150408-14150528 1.02e-01 85_[+3(8.24e-05)]_27 chr2R:16159998-16160118 5.51e-01 120 chr2R:13450200-13450320 1.80e-03 31_[+2(1.98e-05)]_81 chrX:18837247-18837367 2.12e-02 120 chr2L:2580111-2580231 9.77e-01 120 chrX:1370115-1370235 9.66e-01 120 chr3L:6861322-6861442 8.70e-01 120 chrX:11149280-11149400 3.74e-01 120 chr2R:8603106-8603226 1.93e-01 120 chr3R:27071039-27071159 2.75e-01 120 chr2R:6133388-6133508 1.31e-01 120 chr3R:13016286-13016406 4.06e-02 104_[+1(5.38e-05)]_8 chr2L:13783985-13784105 4.59e-02 120 chr3L:6719670-6719790 4.01e-01 120 chr3L:21014520-21014640 8.75e-01 120 chr3L:3350834-3350954 1.00e+00 120 chr2L:9779197-9779317 2.40e-02 82_[+4(2.39e-05)]_30 chr2L:13291067-13291187 9.02e-05 20_[+2(5.56e-05)]_47_[+1(5.38e-05)]_\ 14_[+3(8.24e-05)]_15 chr2R:22545981-22546101 5.97e-01 120 chr3L:1385908-1386028 1.99e-01 120 chr3L:9461720-9461840 7.41e-02 33_[+1(4.53e-05)]_79 chrX:7304878-7304998 7.77e-01 120 chr2R:11204589-11204709 1.91e-01 120 chr2L:7149087-7149207 2.45e-01 120 chr2R:22683230-22683350 2.22e-02 120 chr2R:11181225-11181345 2.79e-01 33_[+5(9.46e-05)]_79 chr3L:15235346-15235466 1.74e-01 54_[+5(9.46e-05)]_58 chr2L:20889984-20890104 2.16e-01 120 chr3R:19164959-19165079 9.80e-02 54_[+5(1.09e-05)]_58 chr2L:10736083-10736203 7.32e-01 120 chr3R:20833883-20834003 2.45e-01 120 chr2R:18273454-18273574 9.93e-01 120 chrX:3538948-3539068 2.59e-01 120 chr3R:31805369-31805489 4.03e-02 120 chrX:11715474-11715594 6.71e-04 17_[+1(1.13e-05)]_3_[+2(3.93e-05)]_\ 84 chrX:2184696-2184816 5.84e-01 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36_[+4(2.39e-05)]_40_[+3(6.43e-05)]_\ 28 chr2R:12870195-12870315 2.12e-01 120 chrX:16683943-16684063 3.96e-01 120 chr2L:3587431-3587551 9.98e-01 120 chr3L:10691204-10691324 8.15e-02 32_[+2(1.47e-05)]_80 chr3R:23157820-23157940 3.07e-02 85_[+4(2.39e-05)]_27 chr3R:20829262-20829382 1.02e-01 120 chr3L:20389111-20389231 8.54e-01 120 chr2R:14645114-14645234 1.96e-03 27_[+5(9.46e-05)]_77_[+1(4.53e-05)] chr2L:6339669-6339789 5.33e-01 120 chr3L:5926102-5926222 2.37e-01 120 chr3R:14278578-14278698 1.31e-01 73_[+1(4.53e-05)]_39 chr3R:20735529-20735649 1.23e-03 32_[+4(2.39e-05)]_1_[+3(4.00e-05)]_\ 71 chr3R:4429016-4429136 2.40e-01 120 chr2R:8650505-8650625 3.57e-02 21_[+3(4.00e-05)]_91 chr2R:21535560-21535680 2.43e-02 43_[+3(4.00e-05)]_69 chr3R:10648939-10649059 6.18e-01 120 chr3L:21251425-21251545 2.42e-01 120 chrX:8141439-8141559 2.74e-02 9_[+2(3.93e-05)]_103 chr2L:21619237-21619357 3.46e-02 34_[+1(2.25e-05)]_78 chr2R:16097173-16097293 5.89e-01 120 chr2R:5122222-5122342 5.36e-01 120 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120 chr3L:22065811-22065931 2.77e-01 120 chr3R:27245344-27245464 7.39e-02 120 chrX:13128118-13128238 1.83e-01 120 chr3L:4413217-4413337 9.32e-01 120 chr3R:29493420-29493540 1.66e-03 28_[+4(2.39e-05)]_37_[+2(8.54e-05)]_\ 39 chrX:9193802-9193922 4.92e-01 120 chr3R:5264568-5264688 7.44e-01 120 chr3L:9456105-9456225 8.30e-01 120 chrX:7945536-7945656 8.16e-01 120 chrX:10488024-10488144 9.18e-01 120 chr3L:19897284-19897404 9.33e-01 120 chr3R:5588314-5588434 6.38e-02 120 chrX:5665921-5666041 1.63e-02 80_[+4(4.67e-05)]_32 chr2R:10103808-10103928 9.86e-01 120 chr2L:14359023-14359143 9.78e-01 120 chr2R:13502332-13502452 5.78e-02 25_[+1(1.13e-05)]_87 chr2R:9834905-9835025 5.52e-01 120 chr3R:26566971-26567091 1.55e-01 120 chr3R:21112524-21112644 7.00e-01 120 chr2L:3778875-3778995 1.28e-02 120 chr3R:30305105-30305225 4.43e-01 120 chrX:16834337-16834457 9.97e-01 120 chr3R:31060366-31060486 3.10e-01 120 chr3L:3770994-3771114 7.56e-01 120 chr2R:17062648-17062768 5.84e-03 51_[+2(3.93e-05)]_61 chr2R:17161022-17161142 9.07e-01 120 chr3L:1350584-1350704 5.15e-01 120 chr3L:27267112-27267232 1.00e+00 120 chr2R:7815063-7815183 1.13e-01 82_[+3(4.00e-05)]_30 chr3L:5857099-5857219 9.04e-01 120 chr3L:13929281-13929401 3.15e-01 120 chr2L:15629982-15630102 9.95e-01 120 chr2L:20822848-20822968 1.55e-02 [+2(6.49e-06)]_112 chr3R:9065079-9065199 1.12e-01 22_[+4(4.67e-05)]_90 chr3L:11820048-11820168 1.53e-02 23_[+5(1.09e-05)]_89 chr3L:699381-699501 8.81e-01 120 chr3R:29877055-29877175 1.97e-01 120 chr3L:16769983-16770103 1.10e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************