******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sens.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:26859320-26859440 1.0000 120 chr3L:1167024-1167144 1.0000 120 chr3L:623743-623863 1.0000 120 chr3L:13403143-13403263 1.0000 120 chr2R:13305674-13305794 1.0000 120 chr3L:1424597-1424717 1.0000 120 chrX:8417079-8417199 1.0000 120 chrX:7975963-7976083 1.0000 120 chr2L:3675918-3676038 1.0000 120 chr3L:13401010-13401130 1.0000 120 chr2R:20696586-20696706 1.0000 120 chrX:10115675-10115795 1.0000 120 chr2L:7293552-7293672 1.0000 120 chr2L:3841132-3841252 1.0000 120 chr2L:18505661-18505781 1.0000 120 chrX:18542092-18542212 1.0000 120 chr3R:15644887-15645007 1.0000 120 chr3R:31059858-31059978 1.0000 120 chr3L:721120-721240 1.0000 120 chr3L:12619055-12619175 1.0000 120 chr3L:13397843-13397963 1.0000 120 chr3R:27440759-27440879 1.0000 120 chr2R:13618008-13618128 1.0000 120 chr3R:15265526-15265646 1.0000 120 chr3L:8029468-8029588 1.0000 120 chr2L:7158958-7159078 1.0000 120 chr3L:18838031-18838151 1.0000 120 chr3L:15199366-15199486 1.0000 120 chrX:19785048-19785168 1.0000 120 chrX:771817-771937 1.0000 120 chrX:8835256-8835376 1.0000 120 chrX:4498417-4498537 1.0000 120 chrX:8536778-8536898 1.0000 120 chr2R:19311036-19311156 1.0000 120 chr2L:11326511-11326631 1.0000 120 chr2L:15741472-15741592 1.0000 120 chr3R:27826327-27826447 1.0000 120 chr2L:4286204-4286324 1.0000 120 chr2R:22648714-22648834 1.0000 120 chr2R:14625401-14625521 1.0000 120 chr2L:10404158-10404278 1.0000 120 chr3L:2862330-2862450 1.0000 120 chr3R:31696790-31696910 1.0000 120 chr3R:10636175-10636295 1.0000 120 chr3R:10628401-10628521 1.0000 120 chr3L:5952241-5952361 1.0000 120 chr2R:14803523-14803643 1.0000 120 chr2R:6870662-6870782 1.0000 120 chr3L:16486636-16486756 1.0000 120 chr3R:6723950-6724070 1.0000 120 chr2L:19058992-19059112 1.0000 120 chr3L:16744051-16744171 1.0000 120 chr3R:13817536-13817656 1.0000 120 chr2L:7339791-7339911 1.0000 120 chr2L:14562327-14562447 1.0000 120 chrX:3136851-3136971 1.0000 120 chr3L:18272435-18272555 1.0000 120 chr3L:295127-295247 1.0000 120 chr2L:7155036-7155156 1.0000 120 chr3R:22878551-22878671 1.0000 120 chr3R:29690603-29690723 1.0000 120 chr3L:11408840-11408960 1.0000 120 chrX:10825507-10825627 1.0000 120 chr2R:21128462-21128582 1.0000 120 chrX:17357577-17357697 1.0000 120 chr3R:13469416-13469536 1.0000 120 chr2L:3601024-3601144 1.0000 120 chr2L:7616995-7617115 1.0000 120 chr2R:23567449-23567569 1.0000 120 chrX:5889122-5889242 1.0000 120 chr2R:21323941-21324061 1.0000 120 chrX:17499137-17499257 1.0000 120 chrX:5646448-5646568 1.0000 120 chrX:19843059-19843179 1.0000 120 chrX:8677568-8677688 1.0000 120 chrX:12889253-12889373 1.0000 120 chr2R:8045832-8045952 1.0000 120 chr2R:21851672-21851792 1.0000 120 chr3R:8920255-8920375 1.0000 120 chr3R:10641372-10641492 1.0000 120 chr3R:13892954-13893074 1.0000 120 chr3R:6425826-6425946 1.0000 120 chr3R:5095582-5095702 1.0000 120 chr3L:4272317-4272437 1.0000 120 chr2R:23003231-23003351 1.0000 120 chr3R:8197287-8197407 1.0000 120 chr2R:20572568-20572688 1.0000 120 chrX:13820669-13820789 1.0000 120 chr2L:7266145-7266265 1.0000 120 chrX:15818760-15818880 1.0000 120 chrX:12221635-12221755 1.0000 120 chr3R:6406657-6406777 1.0000 120 chr3R:19108208-19108328 1.0000 120 chrX:4581893-4582013 1.0000 120 chrX:14805832-14805952 1.0000 120 chr3L:745708-745828 1.0000 120 chrX:6615580-6615700 1.0000 120 chr3L:16768398-16768518 1.0000 120 chr3R:18297648-18297768 1.0000 120 chr2L:7515532-7515652 1.0000 120 chr2L:1646655-1646775 1.0000 120 chr3L:14166431-14166551 1.0000 120 chr2L:18930849-18930969 1.0000 120 chr2R:12741200-12741320 1.0000 120 chrX:2973666-2973786 1.0000 120 chrX:16650579-16650699 1.0000 120 chr3L:16760452-16760572 1.0000 120 chrX:9119394-9119514 1.0000 120 chr2L:12351029-12351149 1.0000 120 chr3L:3875163-3875283 1.0000 120 chr3L:907782-907902 1.0000 120 chr3L:16056333-16056453 1.0000 120 chr2R:20590666-20590786 1.0000 120 chr2R:22387682-22387802 1.0000 120 chrX:2036954-2037074 1.0000 120 chr2R:12729367-12729487 1.0000 120 chr3R:24301604-24301724 1.0000 120 chr3R:13549720-13549840 1.0000 120 chr3R:16769530-16769650 1.0000 120 chr2L:7295147-7295267 1.0000 120 chr2R:12173444-12173564 1.0000 120 chrX:3073711-3073831 1.0000 120 chr3R:20548349-20548469 1.0000 120 chr2L:8554443-8554563 1.0000 120 chrX:8671549-8671669 1.0000 120 chr3R:11368833-11368953 1.0000 120 chr2L:3888324-3888444 1.0000 120 chr3L:1216594-1216714 1.0000 120 chr3R:23941750-23941870 1.0000 120 chrX:16103516-16103636 1.0000 120 chr2R:11452516-11452636 1.0000 120 chrX:17473399-17473519 1.0000 120 chr3L:9028209-9028329 1.0000 120 chrX:12249032-12249152 1.0000 120 chr3R:23872900-23873020 1.0000 120 chr2R:14494801-14494921 1.0000 120 chr3L:775115-775235 1.0000 120 chr3R:29541565-29541685 1.0000 120 chr2R:10196383-10196503 1.0000 120 chr2R:9693577-9693697 1.0000 120 chr2R:10194924-10195044 1.0000 120 chr3R:18924023-18924143 1.0000 120 chr3R:27289758-27289878 1.0000 120 chr2L:3776088-3776208 1.0000 120 chr3R:18914114-18914234 1.0000 120 chr3R:11806900-11807020 1.0000 120 chr3R:10449137-10449257 1.0000 120 chr2R:13968161-13968281 1.0000 120 chr3L:12668148-12668268 1.0000 120 chr2R:9251952-9252072 1.0000 120 chr2L:4915998-4916118 1.0000 120 chr3R:31689829-31689949 1.0000 120 chr3L:13068353-13068473 1.0000 120 chrX:7703097-7703217 1.0000 120 chr3R:22039619-22039739 1.0000 120 chr2R:23180978-23181098 1.0000 120 chr3R:4775460-4775580 1.0000 120 chrX:6663300-6663420 1.0000 120 chrX:4936610-4936730 1.0000 120 chr2R:18273474-18273594 1.0000 120 chrX:4322739-4322859 1.0000 120 chr2L:5491359-5491479 1.0000 120 chrX:5689762-5689882 1.0000 120 chr3L:2159049-2159169 1.0000 120 chrX:7571368-7571488 1.0000 120 chr3L:2468485-2468605 1.0000 120 chr3R:11312488-11312608 1.0000 120 chr3R:25453477-25453597 1.0000 120 chr3L:21130955-21131075 1.0000 120 chr3R:12985938-12986058 1.0000 120 chrX:3690752-3690872 1.0000 120 chr2R:9712307-9712427 1.0000 120 chr2L:10276958-10277078 1.0000 120 chrX:20506096-20506216 1.0000 120 chr3L:5987791-5987911 1.0000 120 chr3L:16452434-16452554 1.0000 120 chr2R:12742607-12742727 1.0000 120 chrX:3714160-3714280 1.0000 120 chr3R:11617487-11617607 1.0000 120 chr3R:15670656-15670776 1.0000 120 chr3L:3970455-3970575 1.0000 120 chr3R:26235169-26235289 1.0000 120 chr2L:7388153-7388273 1.0000 120 chr3R:7092092-7092212 1.0000 120 chr2L:11950061-11950181 1.0000 120 chr3R:28857390-28857510 1.0000 120 chr2R:11094339-11094459 1.0000 120 chr3L:12037859-12037979 1.0000 120 chr3L:10428232-10428352 1.0000 120 chrX:17510594-17510714 1.0000 120 chr2L:7532779-7532899 1.0000 120 chrX:13789029-13789149 1.0000 120 chrX:12631401-12631521 1.0000 120 chr2L:20890016-20890136 1.0000 120 chr3R:31793736-31793856 1.0000 120 chr2L:11206908-11207028 1.0000 120 chr2L:20915411-20915531 1.0000 120 chr2R:8242641-8242761 1.0000 120 chrX:13253177-13253297 1.0000 120 chr3R:30263830-30263950 1.0000 120 chr2L:7043187-7043307 1.0000 120 chrX:8755478-8755598 1.0000 120 chr3L:10845158-10845278 1.0000 120 chr2R:15351289-15351409 1.0000 120 chrX:13128023-13128143 1.0000 120 chr3R:7082081-7082201 1.0000 120 chr3R:14470737-14470857 1.0000 120 chr3L:8925766-8925886 1.0000 120 chr2R:13926309-13926429 1.0000 120 chr2L:827672-827792 1.0000 120 chr3R:4846919-4847039 1.0000 120 chr3L:20630746-20630866 1.0000 120 chr2L:14245640-14245760 1.0000 120 chr2R:22562185-22562305 1.0000 120 chrX:16441305-16441425 1.0000 120 chr2R:20319550-20319670 1.0000 120 chr3L:8604461-8604581 1.0000 120 chr2R:6707754-6707874 1.0000 120 chr2R:15354516-15354636 1.0000 120 chr3R:13793483-13793603 1.0000 120 chr2R:20601126-20601246 1.0000 120 chr3L:11334181-11334301 1.0000 120 chr3L:16024797-16024917 1.0000 120 chr3L:4521890-4522010 1.0000 120 chr2R:21527436-21527556 1.0000 120 chrX:19371616-19371736 1.0000 120 chr2R:23176780-23176900 1.0000 120 chr3L:14172747-14172867 1.0000 120 chr3R:31772052-31772172 1.0000 120 chr2R:21711973-21712093 1.0000 120 chr3L:5988850-5988970 1.0000 120 chr2L:1428443-1428563 1.0000 120 chrX:19166513-19166633 1.0000 120 chr3R:8171633-8171753 1.0000 120 chr3R:28859096-28859216 1.0000 120 chr2L:11331817-11331937 1.0000 120 chr3L:736086-736206 1.0000 120 chrX:1859033-1859153 1.0000 120 chr2L:1462219-1462339 1.0000 120 chr3R:12406311-12406431 1.0000 120 chrX:20511609-20511729 1.0000 120 chr3L:15321084-15321204 1.0000 120 chr3R:29255304-29255424 1.0000 120 chr2L:901505-901625 1.0000 120 chr2L:5245726-5245846 1.0000 120 chr3R:20276171-20276291 1.0000 120 chr3L:11429895-11430015 1.0000 120 chrX:18774858-18774978 1.0000 120 chr2R:14109821-14109941 1.0000 120 chr2R:9681851-9681971 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sens/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sens.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.324 C 0.17 G 0.168 T 0.339 Background letter frequencies (from file dataset with add-one prior applied): A 0.324 C 0.17 G 0.168 T 0.339 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTCAGTGC MEME-1 width = 8 sites = 16 llr = 170 E-value = 8.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 6:a::::9 probability G :1::a:a1 matrix T 49:::a:: bits 2.6 * * * 2.3 * * * 2.1 * * ** 1.8 * * ** Relative 1.5 ****** Entropy 1.3 * ****** (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCAGTGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11334181-11334301 106 5.16e-06 TATTTTGTAT CTCAGTGC ATAGCCA chr2R:10196383-10196503 89 5.16e-06 ACGATTTTTT CTCAGTGC ATACAGGCAA chr3R:29541565-29541685 83 5.16e-06 AATATTTTCT CTCAGTGC ACATAACAGC chr2L:3601024-3601144 85 5.16e-06 AGTAATTTCT CTCAGTGC CAACACCCAG chr2R:14803523-14803643 49 5.16e-06 TTAAATTTCT CTCAGTGC ACTTAGGCAC chr3R:15644887-15645007 102 5.16e-06 CACTATTTCT CTCAGTGC ACAGATGGAC chr2L:20890016-20890136 101 1.55e-05 TACATTTTCT TTCAGTGC ACCGATTCAC chr3L:5987791-5987911 107 1.55e-05 CAATGTCTTT TTCAGTGC ATTGCG chr3L:745708-745828 102 1.55e-05 AGGAATTTAT TTCAGTGC AGCTACTCAG chr3R:8197287-8197407 98 1.55e-05 ACCTATTTCT TTCAGTGC AAGAACCGAC chrX:10115675-10115795 4 1.55e-05 ATT TTCAGTGC CCCACCCCCC chr3L:13401010-13401130 59 1.55e-05 ATGGGTCTTA TTCAGTGC GGTTTTATCT chr2R:9712307-9712427 87 1.80e-05 AAATCTAGTG CGCAGTGC GCTCATAGCC chr3L:12668148-12668268 55 1.80e-05 ACTTATTTCT CGCAGTGC ATGTGCGTGT chr3R:28859096-28859216 12 2.31e-05 TTGGTGGTTG CTCAGTGG TGCTGAGCTG chrX:771817-771937 39 2.31e-05 AAAACCAACT CTCAGTGG ACTAAACCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11334181-11334301 5.2e-06 105_[+1]_7 chr2R:10196383-10196503 5.2e-06 88_[+1]_24 chr3R:29541565-29541685 5.2e-06 82_[+1]_30 chr2L:3601024-3601144 5.2e-06 84_[+1]_28 chr2R:14803523-14803643 5.2e-06 48_[+1]_64 chr3R:15644887-15645007 5.2e-06 101_[+1]_11 chr2L:20890016-20890136 1.5e-05 100_[+1]_12 chr3L:5987791-5987911 1.5e-05 106_[+1]_6 chr3L:745708-745828 1.5e-05 101_[+1]_11 chr3R:8197287-8197407 1.5e-05 97_[+1]_15 chrX:10115675-10115795 1.5e-05 3_[+1]_109 chr3L:13401010-13401130 1.5e-05 58_[+1]_54 chr2R:9712307-9712427 1.8e-05 86_[+1]_26 chr3L:12668148-12668268 1.8e-05 54_[+1]_58 chr3R:28859096-28859216 2.3e-05 11_[+1]_101 chrX:771817-771937 2.3e-05 38_[+1]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCAGTGC width=8 seqs=16 chr3L:11334181-11334301 ( 106) CTCAGTGC 1 chr2R:10196383-10196503 ( 89) CTCAGTGC 1 chr3R:29541565-29541685 ( 83) CTCAGTGC 1 chr2L:3601024-3601144 ( 85) CTCAGTGC 1 chr2R:14803523-14803643 ( 49) CTCAGTGC 1 chr3R:15644887-15645007 ( 102) CTCAGTGC 1 chr2L:20890016-20890136 ( 101) TTCAGTGC 1 chr3L:5987791-5987911 ( 107) TTCAGTGC 1 chr3L:745708-745828 ( 102) TTCAGTGC 1 chr3R:8197287-8197407 ( 98) TTCAGTGC 1 chrX:10115675-10115795 ( 4) TTCAGTGC 1 chr3L:13401010-13401130 ( 59) TTCAGTGC 1 chr2R:9712307-9712427 ( 87) CGCAGTGC 1 chr3L:12668148-12668268 ( 55) CGCAGTGC 1 chr3R:28859096-28859216 ( 12) CTCAGTGG 1 chrX:771817-771937 ( 39) CTCAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 8.0e-003 -1064 188 -1064 15 -1064 -1064 -42 137 -1064 256 -1064 -1064 163 -1064 -1064 -1064 -1064 -1064 258 -1064 -1064 -1064 -1064 156 -1064 -1064 258 -1064 -1064 237 -42 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.0e-003 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCAGTGC MEME-1 regular expression -------------------------------------------------------------------------------- [CT]TCAGTGC -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGMR MEME-2 width = 8 sites = 21 llr = 199 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:a:::53 pos.-specific C :a:9:14: probability G 8::1:917 matrix T ::::a::: bits 2.6 * 2.3 * 2.1 * * * 1.8 ** * * Relative 1.5 ****** Entropy 1.3 ****** * (13.7 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGAG consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29541565-29541685 104 2.56e-06 TAACAGCATC GCACTGCG GCTGCCGCT chr3L:907782-907902 21 2.56e-06 TTTCAACCAT GCACTGCG AGAAAATCAA chr2L:10276958-10277078 47 7.44e-06 AGATAGAATT GCACTGAG AATCATTGAT chr2R:6870662-6870782 56 7.44e-06 GAAACGTGAA GCACTGAG AAAAAATTAT chr3L:13403143-13403263 69 7.44e-06 TAGGAATGCA GCACTGAG AAATTTATTG chr3R:26859320-26859440 19 7.44e-06 AACGCAGTGT GCACTGAG AGAAAAGGAC chr3R:12985938-12986058 49 1.49e-05 TACCGCTAAT GCACTGCA CTTTCGATAA chr3L:775115-775235 26 1.49e-05 AACATAACAA GCACTGCA TAACACATGC chr3L:12619055-12619175 9 1.49e-05 TCTAAGAT GCACTGCA CGAAAATATG chr3L:13068353-13068473 79 2.43e-05 CTTCAATTGC GCACTGAA AATGTTGTTC chr3R:11806900-11807020 58 2.43e-05 TGCCAATTAT GCACTGAA AAGTAATAAT chr2R:20572568-20572688 75 2.43e-05 AATTAAAGAG GCACTGAA GATTCCTATG chrX:16103516-16103636 11 2.92e-05 ACGAAATCGT ACACTGCG TAGGTTATGA chr3R:13892954-13893074 18 2.92e-05 TCTCTAATGT ACACTGCG AGAAATAACA chr3L:8604461-8604581 94 3.44e-05 CGTGCAGCAA GCAGTGCG CACTGCTTCA chr2L:18930849-18930969 41 3.92e-05 CGCATTAACT GCACTGGA AAAAACACTT chr3R:19108208-19108328 49 4.86e-05 TTGGATCTAA ACACTGAG AATAAATTTG chrX:13253177-13253297 3 5.84e-05 GG GCACTCAG TATGACAAAA chr3L:16768398-16768518 98 5.84e-05 GTGGTTCAAT GCACTCAG TTAATGTTAT chr3L:12037859-12037979 19 6.33e-05 TGGATGCCAC ACACTGGG CATAAAAATT chr2R:9693577-9693697 60 6.83e-05 CAAAGAATAG GCAGTGGG TTTAAAGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29541565-29541685 2.6e-06 103_[+2]_9 chr3L:907782-907902 2.6e-06 20_[+2]_92 chr2L:10276958-10277078 7.4e-06 46_[+2]_66 chr2R:6870662-6870782 7.4e-06 55_[+2]_57 chr3L:13403143-13403263 7.4e-06 68_[+2]_44 chr3R:26859320-26859440 7.4e-06 18_[+2]_94 chr3R:12985938-12986058 1.5e-05 48_[+2]_64 chr3L:775115-775235 1.5e-05 25_[+2]_87 chr3L:12619055-12619175 1.5e-05 8_[+2]_104 chr3L:13068353-13068473 2.4e-05 78_[+2]_34 chr3R:11806900-11807020 2.4e-05 57_[+2]_55 chr2R:20572568-20572688 2.4e-05 74_[+2]_38 chrX:16103516-16103636 2.9e-05 10_[+2]_102 chr3R:13892954-13893074 2.9e-05 17_[+2]_95 chr3L:8604461-8604581 3.4e-05 93_[+2]_19 chr2L:18930849-18930969 3.9e-05 40_[+2]_72 chr3R:19108208-19108328 4.9e-05 48_[+2]_64 chrX:13253177-13253297 5.8e-05 2_[+2]_110 chr3L:16768398-16768518 5.8e-05 97_[+2]_15 chr3L:12037859-12037979 6.3e-05 18_[+2]_94 chr2R:9693577-9693697 6.8e-05 59_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGMR width=8 seqs=21 chr3R:29541565-29541685 ( 104) GCACTGCG 1 chr3L:907782-907902 ( 21) GCACTGCG 1 chr2L:10276958-10277078 ( 47) GCACTGAG 1 chr2R:6870662-6870782 ( 56) GCACTGAG 1 chr3L:13403143-13403263 ( 69) GCACTGAG 1 chr3R:26859320-26859440 ( 19) GCACTGAG 1 chr3R:12985938-12986058 ( 49) GCACTGCA 1 chr3L:775115-775235 ( 26) GCACTGCA 1 chr3L:12619055-12619175 ( 9) GCACTGCA 1 chr3L:13068353-13068473 ( 79) GCACTGAA 1 chr3R:11806900-11807020 ( 58) GCACTGAA 1 chr2R:20572568-20572688 ( 75) GCACTGAA 1 chrX:16103516-16103636 ( 11) ACACTGCG 1 chr3R:13892954-13893074 ( 18) ACACTGCG 1 chr3L:8604461-8604581 ( 94) GCAGTGCG 1 chr2L:18930849-18930969 ( 41) GCACTGGA 1 chr3R:19108208-19108328 ( 49) ACACTGAG 1 chrX:13253177-13253297 ( 3) GCACTCAG 1 chr3L:16768398-16768518 ( 98) GCACTCAG 1 chr3L:12037859-12037979 ( 19) ACACTGGG 1 chr2R:9693577-9693697 ( 60) GCAGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 2.4e+001 -77 -1104 227 -1104 -1104 256 -1104 -1104 163 -1104 -1104 -1104 -1104 242 -81 -1104 -1104 -1104 -1104 156 -1104 -83 243 -1104 56 117 -23 -1104 4 -1104 199 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.4e+001 0.190476 0.000000 0.809524 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.095238 0.904762 0.000000 0.476190 0.380952 0.142857 0.000000 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMR MEME-2 regular expression -------------------------------------------------------------------------------- GCACTG[AC][GA] -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGGGA MEME-3 width = 8 sites = 2 llr = 27 E-value = 8.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C a:a::::: probability G :a:aaaa: matrix T :::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.5 ******** Entropy 1.3 ******** (19.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGGGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7339791-7339911 7 1.25e-06 CTGACC CGCGGGGA AAGGGGGGAG chr3L:13397843-13397963 104 1.25e-06 GGGAATCGAT CGCGGGGA TTGGACGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7339791-7339911 1.3e-06 6_[+3]_106 chr3L:13397843-13397963 1.3e-06 103_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGGGA width=8 seqs=2 chr2L:7339791-7339911 ( 7) CGCGGGGA 1 chr3L:13397843-13397963 ( 104) CGCGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.2e+003 -765 255 -765 -765 -765 -765 257 -765 -765 255 -765 -765 -765 -765 257 -765 -765 -765 257 -765 -765 -765 257 -765 -765 -765 257 -765 162 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGGA MEME-3 regular expression -------------------------------------------------------------------------------- CGCGGGGA -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TKGSCGCS MEME-4 width = 8 sites = 10 llr = 109 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::4a:a6 probability G :4a6:a:4 matrix T 96:::::: bits 2.6 * *** 2.3 * *** 2.1 * *** 1.8 * *** Relative 1.5 ****** Entropy 1.3 * ****** (15.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGGCGCC consensus G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20601126-20601246 83 4.00e-06 ACGTTCTTTG TTGGCGCC TAAAAATGCT chr2L:20915411-20915531 86 4.00e-06 ATGTATATTT TTGGCGCC ATTAAAATGT chr2R:12729367-12729487 90 4.00e-06 GTTTTGGCCC TTGGCGCC ATATATTCCC chr2R:14109821-14109941 106 6.66e-06 CCGTTTACCT TGGCCGCC ACTCGAC chr3R:29255304-29255424 88 6.66e-06 GATGAGCTAA TGGGCGCG AGCGAGATGG chr2R:22562185-22562305 28 6.66e-06 GTGGAAGATT TGGGCGCG CAATTCAAAA chr3L:16486636-16486756 98 1.20e-05 GCAACATGTT TTGCCGCC TGAACCACAC chrX:20511609-20511729 110 1.33e-05 TGTAGACAGC TGGCCGCG AGT chr2R:20319550-20319670 107 1.60e-05 AAATTTCTTT TTGCCGCG TTGTTT chr3L:8604461-8604581 73 1.80e-05 TTTCAAATCT CTGGCGCC CACCGTGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20601126-20601246 4e-06 82_[+4]_30 chr2L:20915411-20915531 4e-06 85_[+4]_27 chr2R:12729367-12729487 4e-06 89_[+4]_23 chr2R:14109821-14109941 6.7e-06 105_[+4]_7 chr3R:29255304-29255424 6.7e-06 87_[+4]_25 chr2R:22562185-22562305 6.7e-06 27_[+4]_85 chr3L:16486636-16486756 1.2e-05 97_[+4]_15 chrX:20511609-20511729 1.3e-05 109_[+4]_3 chr2R:20319550-20319670 1.6e-05 106_[+4]_6 chr3L:8604461-8604581 1.8e-05 72_[+4]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKGSCGCS width=8 seqs=10 chr2R:20601126-20601246 ( 83) TTGGCGCC 1 chr2L:20915411-20915531 ( 86) TTGGCGCC 1 chr2R:12729367-12729487 ( 90) TTGGCGCC 1 chr2R:14109821-14109941 ( 106) TGGCCGCC 1 chr3R:29255304-29255424 ( 88) TGGGCGCG 1 chr2R:22562185-22562305 ( 28) TGGGCGCG 1 chr3L:16486636-16486756 ( 98) TTGCCGCC 1 chrX:20511609-20511729 ( 110) TGGCCGCG 1 chr2R:20319550-20319670 ( 107) TTGCCGCG 1 chr3L:8604461-8604581 ( 73) CTGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 6.2e+003 -997 -76 -997 141 -997 -997 125 82 -997 -997 258 -997 -997 124 184 -997 -997 256 -997 -997 -997 -997 258 -997 -997 256 -997 -997 -997 182 125 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.2e+003 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKGSCGCS MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]G[GC]CGC[CG] -------------------------------------------------------------------------------- Time 26.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAGCTG MEME-5 width = 8 sites = 4 llr = 49 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :8a::a:: probability G a3::a::a matrix T ::::::a: bits 2.6 * * ** * 2.3 * * ** * 2.1 * * ** * 1.8 *** ** * Relative 1.5 ******** Entropy 1.3 ******** (17.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCAGCTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16024797-16024917 9 2.56e-06 TAAAATCA GCCAGCTG AATATATCTA chr2L:7043187-7043307 27 2.56e-06 AAAAAAAAAA GCCAGCTG TTTGCCGATG chr3L:11408840-11408960 15 2.56e-06 ATGTCTCTCG GCCAGCTG CTGTCCTCTC chr3R:18297648-18297768 37 5.09e-06 TATTTATGTA GGCAGCTG TTCTCTAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16024797-16024917 2.6e-06 8_[+5]_104 chr2L:7043187-7043307 2.6e-06 26_[+5]_86 chr3L:11408840-11408960 2.6e-06 14_[+5]_98 chr3R:18297648-18297768 5.1e-06 36_[+5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAGCTG width=8 seqs=4 chr3L:16024797-16024917 ( 9) GCCAGCTG 1 chr2L:7043187-7043307 ( 27) GCCAGCTG 1 chr3L:11408840-11408960 ( 15) GCCAGCTG 1 chr3R:18297648-18297768 ( 37) GGCAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.4e+004 -865 -865 257 -865 -865 214 58 -865 -865 256 -865 -865 162 -865 -865 -865 -865 -865 257 -865 -865 256 -865 -865 -865 -865 -865 156 -865 -865 257 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAGCTG MEME-5 regular expression -------------------------------------------------------------------------------- G[CG]CAGCTG -------------------------------------------------------------------------------- Time 32.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26859320-26859440 3.72e-03 18_[+2(7.44e-06)]_94 chr3L:1167024-1167144 9.64e-01 120 chr3L:623743-623863 4.44e-01 120 chr3L:13403143-13403263 1.83e-02 68_[+2(7.44e-06)]_44 chr2R:13305674-13305794 5.11e-01 120 chr3L:1424597-1424717 5.92e-01 120 chrX:8417079-8417199 1.00e+00 120 chrX:7975963-7976083 1.90e-01 120 chr2L:3675918-3676038 4.14e-01 120 chr3L:13401010-13401130 5.93e-03 58_[+1(1.55e-05)]_41_[+1(7.44e-05)]_\ 5 chr2R:20696586-20696706 1.72e-01 120 chrX:10115675-10115795 2.66e-02 3_[+1(1.55e-05)]_109 chr2L:7293552-7293672 8.87e-01 120 chr2L:3841132-3841252 1.10e-01 120 chr2L:18505661-18505781 7.00e-01 120 chrX:18542092-18542212 8.87e-01 120 chr3R:15644887-15645007 2.16e-02 101_[+1(5.16e-06)]_11 chr3R:31059858-31059978 4.07e-02 120 chr3L:721120-721240 6.13e-01 120 chr3L:12619055-12619175 6.01e-02 8_[+2(1.49e-05)]_104 chr3L:13397843-13397963 1.56e-03 89_[+3(4.72e-05)]_6_[+3(1.25e-06)]_\ 9 chr3R:27440759-27440879 3.36e-01 120 chr2R:13618008-13618128 7.68e-01 120 chr3R:15265526-15265646 4.90e-01 120 chr3L:8029468-8029588 2.93e-02 120 chr2L:7158958-7159078 6.37e-01 120 chr3L:18838031-18838151 2.13e-01 120 chr3L:15199366-15199486 4.28e-01 120 chrX:19785048-19785168 9.68e-01 120 chrX:771817-771937 6.17e-02 38_[+1(2.31e-05)]_74 chrX:8835256-8835376 4.82e-01 120 chrX:4498417-4498537 5.27e-01 120 chrX:8536778-8536898 1.45e-01 120 chr2R:19311036-19311156 5.73e-01 120 chr2L:11326511-11326631 9.28e-02 57_[+5(8.85e-05)]_55 chr2L:15741472-15741592 9.05e-01 120 chr3R:27826327-27826447 2.62e-01 120 chr2L:4286204-4286324 2.05e-01 120 chr2R:22648714-22648834 9.53e-01 120 chr2R:14625401-14625521 7.28e-01 120 chr2L:10404158-10404278 7.50e-01 120 chr3L:2862330-2862450 4.17e-01 120 chr3R:31696790-31696910 6.50e-01 120 chr3R:10636175-10636295 9.99e-01 120 chr3R:10628401-10628521 9.38e-01 120 chr3L:5952241-5952361 8.64e-01 120 chr2R:14803523-14803643 3.77e-03 48_[+1(5.16e-06)]_64 chr2R:6870662-6870782 2.04e-02 55_[+2(7.44e-06)]_57 chr3L:16486636-16486756 4.92e-03 97_[+4(1.20e-05)]_15 chr3R:6723950-6724070 7.98e-01 120 chr2L:19058992-19059112 2.32e-03 120 chr3L:16744051-16744171 9.16e-01 120 chr3R:13817536-13817656 4.05e-02 120 chr2L:7339791-7339911 3.32e-03 6_[+3(1.25e-06)]_106 chr2L:14562327-14562447 9.91e-01 120 chrX:3136851-3136971 1.00e-01 120 chr3L:18272435-18272555 9.80e-01 120 chr3L:295127-295247 1.48e-01 120 chr2L:7155036-7155156 9.96e-01 120 chr3R:22878551-22878671 4.45e-01 120 chr3R:29690603-29690723 9.94e-01 120 chr3L:11408840-11408960 6.77e-03 14_[+5(2.56e-06)]_98 chrX:10825507-10825627 9.57e-01 120 chr2R:21128462-21128582 4.76e-03 103_[+3(4.72e-05)]_9 chrX:17357577-17357697 8.67e-01 120 chr3R:13469416-13469536 2.94e-01 120 chr2L:3601024-3601144 3.56e-03 84_[+1(5.16e-06)]_28 chr2L:7616995-7617115 4.62e-01 120 chr2R:23567449-23567569 2.66e-01 120 chrX:5889122-5889242 1.34e-01 120 chr2R:21323941-21324061 1.18e-01 120 chrX:17499137-17499257 2.38e-01 120 chrX:5646448-5646568 4.09e-02 120 chrX:19843059-19843179 5.04e-01 120 chrX:8677568-8677688 7.65e-01 120 chrX:12889253-12889373 3.99e-02 120 chr2R:8045832-8045952 5.38e-01 120 chr2R:21851672-21851792 5.42e-01 120 chr3R:8920255-8920375 2.45e-01 120 chr3R:10641372-10641492 3.65e-01 120 chr3R:13892954-13893074 4.99e-02 17_[+2(2.92e-05)]_95 chr3R:6425826-6425946 1.00e+00 120 chr3R:5095582-5095702 2.14e-01 120 chr3L:4272317-4272437 8.80e-02 59_[+5(8.85e-05)]_53 chr2R:23003231-23003351 6.36e-01 120 chr3R:8197287-8197407 1.96e-02 97_[+1(1.55e-05)]_15 chr2R:20572568-20572688 1.83e-01 74_[+2(2.43e-05)]_38 chrX:13820669-13820789 9.87e-01 120 chr2L:7266145-7266265 1.21e-01 120 chrX:15818760-15818880 4.57e-01 120 chrX:12221635-12221755 1.25e-01 120 chr3R:6406657-6406777 9.96e-01 120 chr3R:19108208-19108328 7.68e-02 48_[+2(4.86e-05)]_64 chrX:4581893-4582013 9.80e-01 120 chrX:14805832-14805952 3.50e-01 120 chr3L:745708-745828 1.76e-02 101_[+1(1.55e-05)]_11 chrX:6615580-6615700 1.97e-01 120 chr3L:16768398-16768518 5.97e-02 97_[+2(5.84e-05)]_15 chr3R:18297648-18297768 3.59e-03 36_[+5(5.09e-06)]_76 chr2L:7515532-7515652 3.25e-01 120 chr2L:1646655-1646775 7.02e-01 120 chr3L:14166431-14166551 3.28e-01 120 chr2L:18930849-18930969 1.53e-02 40_[+2(3.92e-05)]_72 chr2R:12741200-12741320 1.60e-01 120 chrX:2973666-2973786 3.37e-01 120 chrX:16650579-16650699 6.24e-01 120 chr3L:16760452-16760572 2.25e-01 120 chrX:9119394-9119514 9.07e-01 120 chr2L:12351029-12351149 9.23e-01 120 chr3L:3875163-3875283 9.97e-01 120 chr3L:907782-907902 2.25e-03 20_[+2(2.56e-06)]_92 chr3L:16056333-16056453 4.31e-01 120 chr2R:20590666-20590786 9.92e-01 120 chr2R:22387682-22387802 5.71e-01 120 chrX:2036954-2037074 9.11e-01 120 chr2R:12729367-12729487 1.56e-03 89_[+4(4.00e-06)]_23 chr3R:24301604-24301724 4.98e-01 120 chr3R:13549720-13549840 5.33e-01 120 chr3R:16769530-16769650 7.12e-01 120 chr2L:7295147-7295267 6.82e-01 120 chr2R:12173444-12173564 3.33e-01 120 chrX:3073711-3073831 3.09e-01 120 chr3R:20548349-20548469 5.04e-01 120 chr2L:8554443-8554563 6.26e-01 120 chrX:8671549-8671669 9.34e-01 120 chr3R:11368833-11368953 7.84e-01 120 chr2L:3888324-3888444 3.03e-02 95_[+3(4.72e-05)]_17 chr3L:1216594-1216714 5.82e-01 120 chr3R:23941750-23941870 4.31e-01 120 chrX:16103516-16103636 1.70e-01 10_[+2(2.92e-05)]_102 chr2R:11452516-11452636 1.07e-01 120 chrX:17473399-17473519 7.52e-01 120 chr3L:9028209-9028329 5.77e-01 120 chrX:12249032-12249152 1.00e+00 120 chr3R:23872900-23873020 2.82e-02 44_[+4(9.89e-05)]_68 chr2R:14494801-14494921 3.16e-02 120 chr3L:775115-775235 1.11e-01 25_[+2(1.49e-05)]_87 chr3R:29541565-29541685 6.45e-06 82_[+1(5.16e-06)]_13_[+2(2.56e-06)]_\ 9 chr2R:10196383-10196503 2.34e-03 88_[+1(5.16e-06)]_24 chr2R:9693577-9693697 2.35e-02 59_[+2(6.83e-05)]_53 chr2R:10194924-10195044 4.99e-01 120 chr3R:18924023-18924143 1.03e-01 120 chr3R:27289758-27289878 6.52e-01 120 chr2L:3776088-3776208 9.17e-01 120 chr3R:18914114-18914234 2.16e-01 80_[+4(5.20e-05)]_32 chr3R:11806900-11807020 8.75e-02 57_[+2(2.43e-05)]_55 chr3R:10449137-10449257 8.34e-01 120 chr2R:13968161-13968281 2.06e-04 56_[+4(5.20e-05)]_56 chr3L:12668148-12668268 3.21e-04 54_[+1(1.80e-05)]_58 chr2R:9251952-9252072 5.27e-03 120 chr2L:4915998-4916118 8.50e-02 120 chr3R:31689829-31689949 3.57e-02 120 chr3L:13068353-13068473 1.49e-02 45_[+2(4.86e-05)]_25_[+2(2.43e-05)]_\ 34 chrX:7703097-7703217 1.00e+00 120 chr3R:22039619-22039739 7.45e-01 120 chr2R:23180978-23181098 2.54e-02 104_[+3(4.72e-05)]_8 chr3R:4775460-4775580 9.60e-01 120 chrX:6663300-6663420 6.53e-01 120 chrX:4936610-4936730 2.26e-02 120 chr2R:18273474-18273594 9.07e-01 120 chrX:4322739-4322859 2.80e-02 120 chr2L:5491359-5491479 8.59e-01 120 chrX:5689762-5689882 4.18e-01 120 chr3L:2159049-2159169 9.99e-01 120 chrX:7571368-7571488 5.73e-01 120 chr3L:2468485-2468605 2.77e-01 120 chr3R:11312488-11312608 6.32e-02 3_[+5(8.85e-05)]_109 chr3R:25453477-25453597 2.45e-01 120 chr3L:21130955-21131075 3.09e-01 120 chr3R:12985938-12986058 3.56e-02 48_[+2(1.49e-05)]_64 chrX:3690752-3690872 8.87e-01 120 chr2R:9712307-9712427 1.47e-03 86_[+1(1.80e-05)]_26 chr2L:10276958-10277078 2.86e-03 46_[+2(7.44e-06)]_66 chrX:20506096-20506216 3.02e-01 120 chr3L:5987791-5987911 1.95e-03 106_[+1(1.55e-05)]_6 chr3L:16452434-16452554 8.35e-01 120 chr2R:12742607-12742727 1.49e-01 120 chrX:3714160-3714280 9.85e-01 120 chr3R:11617487-11617607 9.96e-01 120 chr3R:15670656-15670776 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************