******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sd.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:9813241-9813361 1.0000 120 chr3R:13801323-13801443 1.0000 120 chrX:10935699-10935819 1.0000 120 chr3L:1378385-1378505 1.0000 120 chrX:2163497-2163617 1.0000 120 chr3L:1573305-1573425 1.0000 120 chr3L:15996121-15996241 1.0000 120 chr3L:12203123-12203243 1.0000 120 chr2L:10802090-10802210 1.0000 120 chr2R:14310353-14310473 1.0000 120 chr2R:7029800-7029920 1.0000 120 chr2L:16621584-16621704 1.0000 120 chr3L:12840021-12840141 1.0000 120 chr2L:6998875-6998995 1.0000 120 chr3R:9596754-9596874 1.0000 120 chr3R:19080793-19080913 1.0000 120 chr2L:11188534-11188654 1.0000 120 chr3L:16698239-16698359 1.0000 120 chr3R:12702142-12702262 1.0000 120 chr3R:7783072-7783192 1.0000 120 chr3R:24022034-24022154 1.0000 120 chr2L:2840495-2840615 1.0000 120 chr3L:19204541-19204661 1.0000 120 chr3L:13236057-13236177 1.0000 120 chr3R:29985337-29985457 1.0000 120 chr2R:9184235-9184355 1.0000 120 chr3R:7441490-7441610 1.0000 120 chr2L:16839804-16839924 1.0000 120 chr2R:13550979-13551099 1.0000 120 chr2L:9160229-9160349 1.0000 120 chr2L:428729-428849 1.0000 120 chr2R:13247946-13248066 1.0000 120 chr3L:562194-562314 1.0000 120 chr3R:27740831-27740951 1.0000 120 chr3L:16004229-16004349 1.0000 120 chr2L:14449402-14449522 1.0000 120 chr3R:4824816-4824936 1.0000 120 chr3R:7066381-7066501 1.0000 120 chr3L:2121840-2121960 1.0000 120 chr3R:25236306-25236426 1.0000 120 chr3L:21381448-21381568 1.0000 120 chr2R:12016584-12016704 1.0000 120 chrX:5898782-5898902 1.0000 120 chr2L:1579921-1580041 1.0000 120 chr3L:16163269-16163389 1.0000 120 chrX:15807535-15807655 1.0000 120 chr2L:9703862-9703982 1.0000 120 chr3R:27247901-27248021 1.0000 120 chr2R:14264293-14264413 1.0000 120 chr3L:7786239-7786359 1.0000 120 chrX:16900452-16900572 1.0000 120 chr2R:21923429-21923549 1.0000 120 chr3R:31419644-31419764 1.0000 120 chr2R:21260164-21260284 1.0000 120 chr3R:10560067-10560187 1.0000 120 chr3L:4388384-4388504 1.0000 120 chr3R:9499022-9499142 1.0000 120 chr3R:14464692-14464812 1.0000 120 chr2L:9678453-9678573 1.0000 120 chr2L:4906011-4906131 1.0000 120 chr2L:7241071-7241191 1.0000 120 chr3R:8844116-8844236 1.0000 120 chr3R:10776151-10776271 1.0000 120 chr3L:1740708-1740828 1.0000 120 chr2R:18325920-18326040 1.0000 120 chrX:13821085-13821205 1.0000 120 chr3L:7530973-7531093 1.0000 120 chr3R:10537861-10537981 1.0000 120 chr2R:23796054-23796174 1.0000 120 chr2R:11938327-11938447 1.0000 120 chr3R:7661294-7661414 1.0000 120 chr3R:24551139-24551259 1.0000 120 chr3R:14713337-14713457 1.0000 120 chr2L:17390924-17391044 1.0000 120 chr2R:20632913-20633033 1.0000 120 chr2L:10503760-10503880 1.0000 120 chr2L:5798785-5798905 1.0000 120 chr2L:7407806-7407926 1.0000 120 chr3L:19084784-19084904 1.0000 120 chr2R:9749921-9750041 1.0000 120 chr3L:3729765-3729885 1.0000 120 chr3R:14709940-14710060 1.0000 120 chr2R:14974470-14974590 1.0000 120 chrX:18835175-18835295 1.0000 120 chr3L:22228297-22228417 1.0000 120 chr3R:6295990-6296110 1.0000 120 chr3R:9137084-9137204 1.0000 120 chr2L:2731922-2732042 1.0000 120 chr3R:14759072-14759192 1.0000 120 chr2R:11192104-11192224 1.0000 120 chrX:19188647-19188767 1.0000 120 chr2L:14216754-14216874 1.0000 120 chr3R:15128519-15128639 1.0000 120 chrX:12894073-12894193 1.0000 120 chr3L:15998394-15998514 1.0000 120 chr3R:19466251-19466371 1.0000 120 chr3R:6467779-6467899 1.0000 120 chr2R:12291683-12291803 1.0000 120 chr2L:8170929-8171049 1.0000 120 chr3R:9130038-9130158 1.0000 120 chr3L:11145229-11145349 1.0000 120 chrX:16726950-16727070 1.0000 120 chr2R:19197385-19197505 1.0000 120 chr3L:19196249-19196369 1.0000 120 chr2L:9679977-9680097 1.0000 120 chr3R:26918994-26919114 1.0000 120 chr2R:18571047-18571167 1.0000 120 chr2R:19297014-19297134 1.0000 120 chr3L:6254886-6255006 1.0000 120 chrX:2218593-2218713 1.0000 120 chr2R:6222068-6222188 1.0000 120 chr2L:10677828-10677948 1.0000 120 chr3R:9140746-9140866 1.0000 120 chr2L:8715646-8715766 1.0000 120 chr3R:15616114-15616234 1.0000 120 chr3L:20445259-20445379 1.0000 120 chrX:18699902-18700022 1.0000 120 chr3L:20662044-20662164 1.0000 120 chr3L:8746983-8747103 1.0000 120 chr3R:9484708-9484828 1.0000 120 chrX:19504505-19504625 1.0000 120 chr2R:21094096-21094216 1.0000 120 chrX:10534733-10534853 1.0000 120 chr2R:21639372-21639492 1.0000 120 chrX:11546237-11546357 1.0000 120 chr3R:14096055-14096175 1.0000 120 chr3R:16552915-16553035 1.0000 120 chrX:3455147-3455267 1.0000 120 chr2L:21832334-21832454 1.0000 120 chrX:6721002-6721122 1.0000 120 chr3L:2527239-2527359 1.0000 120 chr2R:14922030-14922150 1.0000 120 chr2R:19544734-19544854 1.0000 120 chr2R:12895429-12895549 1.0000 120 chr2L:19788503-19788623 1.0000 120 chr3R:20622436-20622556 1.0000 120 chr3R:13333167-13333287 1.0000 120 chr3L:885997-886117 1.0000 120 chr2R:7948825-7948945 1.0000 120 chr3R:21586570-21586690 1.0000 120 chr3L:16480167-16480287 1.0000 120 chr2L:3637836-3637956 1.0000 120 chr3L:21290490-21290610 1.0000 120 chrX:11601873-11601993 1.0000 120 chr3R:10778319-10778439 1.0000 120 chr2L:7486369-7486489 1.0000 120 chr3R:26621523-26621643 1.0000 120 chr3L:16028084-16028204 1.0000 120 chr3L:513833-513953 1.0000 120 chr2R:20773454-20773574 1.0000 120 chrX:19602659-19602779 1.0000 120 chr3R:7499154-7499274 1.0000 120 chr3R:27570603-27570723 1.0000 120 chr3R:14710783-14710903 1.0000 120 chr3R:30544419-30544539 1.0000 120 chr3R:15180341-15180461 1.0000 120 chr2R:13246452-13246572 1.0000 120 chr3L:17505829-17505949 1.0000 120 chr2R:18142512-18142632 1.0000 120 chr2R:11443791-11443911 1.0000 120 chrX:1282583-1282703 1.0000 120 chr3L:3004325-3004445 1.0000 120 chr3R:27660461-27660581 1.0000 120 chr3L:610913-611033 1.0000 120 chr2R:15811521-15811641 1.0000 120 chr3R:24526204-24526324 1.0000 120 chr3L:3733152-3733272 1.0000 120 chr3R:14708383-14708503 1.0000 120 chr2R:22901850-22901970 1.0000 120 chr2R:12265537-12265657 1.0000 120 chrX:16910022-16910142 1.0000 120 chr3L:8630068-8630188 1.0000 120 chr3L:642171-642291 1.0000 120 chr3R:9914442-9914562 1.0000 120 chr3L:20444203-20444323 1.0000 120 chrX:11393107-11393227 1.0000 120 chr2L:13887447-13887567 1.0000 120 chrX:2168593-2168713 1.0000 120 chr3R:30051941-30052061 1.0000 120 chr3R:24889470-24889590 1.0000 120 chr2R:9751005-9751125 1.0000 120 chr2L:14169594-14169714 1.0000 120 chr3L:8861151-8861271 1.0000 120 chr2R:18127519-18127639 1.0000 120 chr3L:884736-884856 1.0000 120 chr2L:19506442-19506562 1.0000 120 chr2R:9072258-9072378 1.0000 120 chr3L:11718049-11718169 1.0000 120 chr2R:7712473-7712593 1.0000 120 chr3R:9131554-9131674 1.0000 120 chr3R:6230451-6230571 1.0000 120 chr2L:17741723-17741843 1.0000 120 chrX:14861025-14861145 1.0000 120 chr2L:8983742-8983862 1.0000 120 chr3L:4899229-4899349 1.0000 120 chr3L:12304185-12304305 1.0000 120 chr2R:11806009-11806129 1.0000 120 chr2L:8099249-8099369 1.0000 120 chr3L:8855015-8855135 1.0000 120 chr2L:15000504-15000624 1.0000 120 chrX:10015429-10015549 1.0000 120 chr3L:18888724-18888844 1.0000 120 chr3R:31247366-31247486 1.0000 120 chr3R:31127121-31127241 1.0000 120 chrX:8450348-8450468 1.0000 120 chr3R:15923331-15923451 1.0000 120 chrX:16100865-16100985 1.0000 120 chrX:2305276-2305396 1.0000 120 chr2L:21073426-21073546 1.0000 120 chr3L:14223547-14223667 1.0000 120 chr2R:18880565-18880685 1.0000 120 chrX:17828777-17828897 1.0000 120 chr3R:7438783-7438903 1.0000 120 chr2R:12083268-12083388 1.0000 120 chr3R:21836766-21836886 1.0000 120 chr3R:23662951-23663071 1.0000 120 chr2L:16321281-16321401 1.0000 120 chr3R:19001825-19001945 1.0000 120 chr2R:16601833-16601953 1.0000 120 chr2L:5218002-5218122 1.0000 120 chr3R:21602633-21602753 1.0000 120 chr2R:11187228-11187348 1.0000 120 chr3R:15459318-15459438 1.0000 120 chr2R:22552295-22552415 1.0000 120 chr2R:11275363-11275483 1.0000 120 chr2L:16760940-16761060 1.0000 120 chr2R:11667753-11667873 1.0000 120 chr3L:465616-465736 1.0000 120 chr3L:10802946-10803066 1.0000 120 chr2L:10689254-10689374 1.0000 120 chr3L:16059043-16059163 1.0000 120 chr2L:1930849-1930969 1.0000 120 chr2R:15986867-15986987 1.0000 120 chrX:10939054-10939174 1.0000 120 chr3L:14432360-14432480 1.0000 120 chr3R:23790934-23791054 1.0000 120 chr2R:7710940-7711060 1.0000 120 chr2L:2727492-2727612 1.0000 120 chr3R:21092144-21092264 1.0000 120 chr3L:8545596-8545716 1.0000 120 chr2L:1095703-1095823 1.0000 120 chr2L:17425131-17425251 1.0000 120 chr2L:2839597-2839717 1.0000 120 chr3L:535489-535609 1.0000 120 chr3R:28842610-28842730 1.0000 120 chr2R:10676042-10676162 1.0000 120 chr3R:14763753-14763873 1.0000 120 chr2L:4091885-4092005 1.0000 120 chrX:3285344-3285464 1.0000 120 chr3R:15373088-15373208 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sd/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sd.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.208 G 0.211 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.208 G 0.211 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRAATKYY MEME-1 width = 8 sites = 224 llr = 1375 E-value = 6.9e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 347a:::: pos.-specific C 2:3:::65 probability G 56:::3:2 matrix T 1:::a743 bits 2.3 2.0 1.8 ** 1.6 ** Relative 1.4 ** Entropy 1.1 **** * (8.9 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAATTCC consensus AAC GTT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17828777-17828897 37 1.38e-05 GCGACGTTGT GGAATTCC ATCGGAATGC chr3L:18888724-18888844 66 1.38e-05 AAGTTGGGAT GGAATTCC CAACAATACT chr2L:17741723-17741843 71 1.38e-05 ATTTGATGCT GGAATTCC GTGTGTTTTA chr3L:11718049-11718169 39 1.38e-05 GGTCGCATCT GGAATTCC TGCATAATCG chr2R:9072258-9072378 37 1.38e-05 TCCGCATGCT GGAATTCC TTGGCCagcc chr2L:19506442-19506562 46 1.38e-05 GGGGTTTTGT GGAATTCC ACATCGAAAC chr3R:6295990-6296110 36 1.38e-05 CCATTGCGTT GGAATTCC AATAATGCCG chr3R:10776151-10776271 40 1.38e-05 GCATGTGTTT GGAATTCC ACTCGCCCAT chr3R:31127121-31127241 6 2.38e-05 CCGGC GGAATGCC GATACCCGAC chr3L:885997-886117 79 2.38e-05 GGAGGCTCTC GGAATGCC AGTGACTTAA chrX:10534733-10534853 30 2.38e-05 AATGCGATGT GGAATGCC AGACGTTGTG chr3R:27247901-27248021 72 2.38e-05 AACTGCTCTC GGAATGCC AGATTCTCGA chr3R:15373088-15373208 75 3.37e-05 TCATTCCATT GGCATTCC GGGTATTGTT chrX:3285344-3285464 80 3.37e-05 CTTTCAATAA GGCATTCC ATTTTATCAA chr2L:2727492-2727612 78 3.37e-05 CGGGGTCAGC GGCATTCC CATCGAGCTT chr3L:610913-611033 82 3.37e-05 GACGGCGCTG GGCATTCC CAGACAATGC chrX:11601873-11601993 59 3.37e-05 GCTGGAAATC GGCATTCC AGACACATTC chr3R:21586570-21586690 62 3.37e-05 TATATTTCGG GGCATTCC GCATTCCAAG chr3L:1378385-1378505 61 3.37e-05 GTCATTTCCT GGCATTCC GCAAATACTT chr2L:15000504-15000624 48 5.27e-05 TTCAAACTCA GAAATTCC AGCAAAAACA chr3R:9140746-9140866 41 5.27e-05 TGCCACCTCA GAAATTCC ACCATATATC chr3R:9596754-9596874 63 5.27e-05 GTTTTAAGCT GAAATTCC GCCGGCCGAC chr3L:12203123-12203243 27 5.27e-05 AGCCCCGCCA GAAATTCC TGTGTGCCGA chr3R:23790934-23791054 50 6.64e-05 AATAAAAGCA CGAATTCC CCGATCACAG chr2R:7712473-7712593 65 6.64e-05 ACTCCAATCG CGAATTCC CATCAGCCCC chr3R:30051941-30052061 58 6.64e-05 AAACAATAAA CGAATTCC GCGGATTCCA chr3L:3004325-3004445 80 6.64e-05 ATAAGTATAA CGAATTCC GCTGGCACAC chr3R:4824816-4824936 9 6.64e-05 GTAAGCAA CGAATTCC ACGCATTGTT chr3R:14464692-14464812 23 1.31e-04 ATTCATACGC AGAATTCC ATATGGCTTC chr3R:9499022-9499142 59 1.31e-04 CTTGTGAGTG GGAATTCT TGGGGTACCC chr3R:10560067-10560187 34 1.31e-04 CTTCTGCAGT GGAATTTC TGCAGCTCGG chr2R:21260164-21260284 7 1.31e-04 GCTGAC GGAATTTC ATAATGATTT chrX:5898782-5898902 50 1.31e-04 AGAATGCTGA GGAATTTC GCGATGACGT chr3L:13236057-13236177 58 1.31e-04 ACTTCAGCGC GGAATTTC AGCTGTTGAA chr3R:24022034-24022154 49 1.31e-04 CACAAAATGA AGAATTCC TCAGAGATAT chr3R:12702142-12702262 35 1.31e-04 TACACCAGAA GGAATTTC GATGGTTGTA chr2L:16621584-16621704 75 1.31e-04 TTGAATTCTT GGAATTTC TTCTGATAAC chrX:2168593-2168713 101 1.59e-04 AGTCGCGGGG GAAATGCC TGGACAGCCA chr2R:15811521-15811641 9 1.59e-04 TTGGCGCA GAAATGCC CCTCGAATAT chr2R:20773454-20773574 8 1.59e-04 GTTGCTC GGAATTCG ATTCGGGGAA chr3L:22228297-22228417 30 1.59e-04 CACAGCCATT GAAATGCC AAACAGTCGG chr2L:16839804-16839924 21 1.59e-04 AGAATCGCAT GGAATTCG AAATCATATA chr2R:7029800-7029920 113 1.59e-04 GAAGGCCGAG GAAATGCC chr3L:7530973-7531093 60 1.69e-04 TCGCATAGCT CGAATGCC TGCGGAACGG chr2L:17425131-17425251 21 2.24e-04 AAACATTCCC AGAATGCC GAGCCAGACC chr2L:1095703-1095823 43 2.24e-04 CCGACGGCTC GGAATGCT GAGAATGTTA chr2R:15986867-15986987 9 2.24e-04 ACATCGCC GACATTCC ATACCATGGC chr2L:16760940-16761060 106 2.24e-04 TCGAGGAGAA GACATTCC TCAGTTG chr2R:12083268-12083388 99 2.24e-04 ATGTTGCCGC GACATTCC GATGATTTCA chr2R:9751005-9751125 73 2.24e-04 AAATATTTAA AGAATGCC ACTTCCACTT chr3R:26621523-26621643 27 2.24e-04 TCGGGTTTTC GGAATGCT GTTAATCTGC chr2R:18571047-18571167 48 2.24e-04 TTTTGATTGC GACATTCC TGCGCTCATT chr2L:9679977-9680097 89 2.24e-04 GATCGCCATC GGAATGCT GTGCTCGATT chr2L:8170929-8171049 79 2.24e-04 tgtgtgCCTT GGAATGTC TGTGTAGGCC chrX:18835175-18835295 60 2.24e-04 ACGGCACAGA GGAATGTC AAGATGAATC chrX:15807535-15807655 55 2.24e-04 AAAAATTTAA GGAATGTC ACGTTGTAGT chr2L:1579921-1580041 66 2.24e-04 ATCGAATGCC GGAATGTC GATTCGATTG chr3R:25236306-25236426 110 2.24e-04 GTAAATAAAC AGAATGCC GGT chr3L:1573305-1573425 13 2.24e-04 GGTGAGTTTT GGAATGTC GGAGTGGGCT chr2L:8099249-8099369 51 2.44e-04 GGAGCAGGCA GGAATGCG ACAAAAACTA chr3L:12304185-12304305 56 2.44e-04 GAAAATGCTT GGAATGCG ATGCGAAAAC chr3R:15180341-15180461 5 2.44e-04 ACGG CGCATTCC TTTACGGCGT chr2L:7486369-7486489 83 2.44e-04 CTGTGATAGA GGAATGCG GCATACAAAT chr2R:12895429-12895549 60 2.44e-04 AAATGTCGCC GGAATGCG ATGCGGTCGA chrX:11546237-11546357 48 2.44e-04 CTCAAGAGGT GGAATGCG TAAACACGAG chr2L:10677828-10677948 38 2.44e-04 TGAACCGCCT CGCATTCC GCGAATACCA chr3L:11145229-11145349 81 2.44e-04 AGCTCAAGGT CGCATTCC TTGCAGGTGA chr3R:19466251-19466371 64 2.44e-04 AGCTGGGCTT GGAATGCG ACAAAATGCG chr3L:15998394-15998514 48 2.44e-04 GTAGCCGCTT CGCATTCC TCTTGCGCTC chrX:12894073-12894193 34 2.44e-04 TATCTGCCAT CGCATTCC ACACAGCCAC chr2R:12016584-12016704 87 2.44e-04 CTGTCACTGT GGAATGCG AGGCATTTGT chr3L:562194-562314 88 2.44e-04 AAGTACGCGA GGAATGCG GGAACTTAGG chr2R:14310353-14310473 80 2.44e-04 AAACATCCGT GGAATGCG CTGCGAGGCG chr3R:13801323-13801443 45 2.44e-04 GCTGAGGATT GGAATGCG GTGACTTTGG chr3R:19001825-19001945 34 3.04e-04 CATCTGTACG AGCATTCC GCACTGATCG chr3R:31247366-31247486 16 3.04e-04 AACATTTAAC CAAATTCC AATGTTAATC chrX:10015429-10015549 75 3.04e-04 GGCAGCCGTT GGCATTTC GATGACAGCA chr3L:17505829-17505949 66 3.04e-04 TTGATTCACA AGCATTCC GATGGAACAA chr2L:19788503-19788623 87 3.04e-04 GTGTGGGTTC GGCATTTC CCCCTGCTTG chr2R:21094096-21094216 94 3.04e-04 AAGAGGATTC CAAATTCC TTGGAATACT chr3R:14759072-14759192 57 3.04e-04 CGTACGCGTA GGCATTTC GACTAGACTG chr3R:24551139-24551259 4 3.04e-04 TGA GGCATTTC AAGATCACAT chr2R:11938327-11938447 68 3.04e-04 ATTTCAAGAC AGCATTCC CAGCATTGTT chr3R:10537861-10537981 102 3.04e-04 TCCGCACTCA GGCATTTC CCATGCGAGC chr2L:4091885-4092005 32 4.04e-04 gtttACCATT AAAATTCC AACCAGAGAA chr3L:535489-535609 94 4.04e-04 GCTGATAATA AAAATTCC TCGCGCTCTT chr2R:22552295-22552415 43 4.04e-04 AAAATGCCAG GAAATTCT TGGGAGCCAA chr2R:11187228-11187348 68 4.04e-04 GCACATGGGC GAAATTCT TGGCATAGTT chr3R:21602633-21602753 40 4.04e-04 TTTCTTAGGA AAAATTCC AAAGCGTCCC chr2R:18127519-18127639 47 4.04e-04 ACTTATCTCT AAAATTCC GTCTATTGAT chr3L:3733152-3733272 58 4.04e-04 GAAGTTCATT AAAATTCC GCGTCACTCA chr3R:30544419-30544539 3 4.04e-04 GT GAAATTCT TTAGCAACAT chrX:19602659-19602779 86 4.04e-04 TCGTCGACCA AAAATTCC ATGCTAAATC chrX:3455147-3455267 6 4.04e-04 AATAG AAAATTCC ATGCAAGTGT chr2R:12291683-12291803 49 4.04e-04 TTTTGGCCAG AAAATTCC GCACAATTTT chr3R:9137084-9137204 45 4.04e-04 GTACCTGGTG AAAATTCC AAAAGGAAAA chr2R:21923429-21923549 70 4.04e-04 TGCCCGAATG GAAATTCT GGGGGTGAAG chr2R:11667753-11667873 78 4.68e-04 AGCCAACTGC CGCATGCC AAATATAAAA chr3R:21836766-21836886 94 4.68e-04 ACCGAAATTC GAAATTCG GTGTGTGTCT chrX:2305276-2305396 6 4.68e-04 TGCCT CGAATTTC GTATAAATTC chr3R:6230451-6230571 47 4.68e-04 CCAAATACCG CGAATTCT TTATTTGAAA chrX:16910022-16910142 69 4.68e-04 ACATTCCAGT CGAATTCT TTGCGACCAA chr3R:14096055-14096175 87 4.68e-04 GATAGTCACC CGAATTCT TCGAACCAGG chr2R:10676042-10676162 28 6.06e-04 TGGAGTTGGA CGAATTCG TGTGCACACA chr2R:7710940-7711060 30 6.06e-04 TTTTCCGCAC GGAATTTT GGGGTAAGCT chr3R:24526204-24526324 22 6.06e-04 GAATTTTTAT GGAATTTT TCTCGCTGTG chr2L:8715646-8715766 76 6.06e-04 ACTTTTTTTT GGAATTTT TATGGCAAAC chr2R:19297014-19297134 84 6.06e-04 AAATGATGTT GGAATTTT ATGGAACTAG chrX:19188647-19188767 70 6.06e-04 TTTAATCGTA GGAATTTT TATTGGACTC chr3R:14713337-14713457 89 6.06e-04 GGCATACCAT GGAATTTT AGTCCGTTGG chr2R:18325920-18326040 71 6.06e-04 GAAAATGTTC GGAATTTT AGCGAGCCAT chr2L:9703862-9703982 45 6.06e-04 ACTATAAGCT GGAATTTT GCCGGCTACA chr3L:21381448-21381568 22 6.06e-04 AATGTGGTCA GGAATTTT AGTATTTTTT chr3L:16004229-16004349 40 6.06e-04 CCCAGACAGT GGAATTTT ACAATTACGC chr3R:27740831-27740951 66 6.06e-04 TCAGCCTGTT GGAATTTT AATAAATTCG chr3R:28842610-28842730 72 7.10e-04 CTCGAGGCCA AGAATTCG AAAGACGAAC chr2L:16321281-16321401 87 7.10e-04 TCGAATAGGC GAAATGCT CAAAAGCGTC chr2L:8983742-8983862 49 7.10e-04 AAACCGCAGA AAAATGCC GACTAACCAG chr2R:11443791-11443911 43 7.10e-04 TTCAATGCAA AAAATGCC ACAATAAATT chr2R:14922030-14922150 98 7.10e-04 TGGCAAAAAT AGAATTCG AAAATTGATA chr2L:21832334-21832454 54 7.10e-04 CAAACCATGA GGAATTTG TGGTCGGTCA chrX:2218593-2218713 60 7.10e-04 CATGGTGCAC GGAATTTG GACTTGACAT chr2R:14974470-14974590 9 7.10e-04 AAAAAAAA AAAATGCC TCCATAAATT chr2L:7407806-7407926 20 7.10e-04 AAGATGGGGA AGAATTCG GTTCTGTTTC chr3L:2121840-2121960 44 7.10e-04 GACAAAAAAG AAAATGCC GAGAAAATTA chr3R:21092144-21092264 43 7.65e-04 GCACATGTTT CACATTCC CGCCAGTGAA chr3L:10802946-10803066 97 7.65e-04 CATTTGGGGC CACATTCC Gacacaaaaa chr2L:5218002-5218122 73 7.65e-04 tccacTAGTT CACATTCC AATGGCTTGG chr2L:21073426-21073546 61 7.65e-04 TTCATAGAGC CACATTCC CAAAGAAAAA chrX:11393107-11393227 57 7.65e-04 CCCTCCCCGT CACATTCC TACCCCACCG chr3R:20622436-20622556 93 7.65e-04 ATGCGGTTTG GAAATGCG AAATTGTGCC chrX:19504505-19504625 58 7.65e-04 CAGAAATTCA CACATTCC ACAAATTATT chr2R:19197385-19197505 23 7.65e-04 AGCAATGCGA GAAATGCG TACAAACACA chr3L:7786239-7786359 37 7.65e-04 AAACAAAAAA CACATTCC TTCGATATTG chr3R:7783072-7783192 26 7.65e-04 ATCAACCGAA CACATTCC GCGTCTAAGA chr3R:15923331-15923451 56 8.90e-04 GGAGGCAGCT GGAATGTT GTTTCTACTT chrX:14861025-14861145 69 8.90e-04 GCTTGTGGAA AGAATGCT GGCATGAATA chr3R:24889470-24889590 21 8.90e-04 GCCCGTGGCC AACATTCC TCGCTCCATT chrX:1282583-1282703 76 8.90e-04 GCTGAGCGCT GGAATGTT CTCAATTGAA chr3R:13333167-13333287 59 8.90e-04 CACAACCAAA AGAATGCT GTCGAATTAG chr3R:15616114-15616234 22 8.90e-04 TTCCCCCAGA AACATTCC CCACATGCCA chr2R:11192104-11192224 25 8.90e-04 CAGAGATCTG AACATTCC ACGGCATATT chr3R:8844116-8844236 84 8.90e-04 AACTCGGAGT AACATTCC ACGCGTGGGC chr3R:7066381-7066501 93 8.90e-04 TGATTATGGT GGAATGTT TGCCACATAG chr2R:13247946-13248066 41 8.90e-04 CGATGTGTGA AACATTCC ATCGAAGCGT chr2L:10802090-10802210 51 8.90e-04 AATTATGCCA GGAATGTT GGTGGGACCC chrX:10939054-10939174 58 9.78e-04 CGGAATTTAT GGAATGTG CTCGCTTGGA chrX:16100865-16100985 38 9.78e-04 AAATCGCGAG GGAATGTG TAAAAACAAC chr3L:16028084-16028204 34 9.78e-04 CTAATTTATC TGAATTCC TGCATTTTGC chr2R:7948825-7948945 76 9.78e-04 TAAAGCGTGC CGCATTCT CTGCCCACCC chr3L:8746983-8747103 99 9.78e-04 GCCACATTTT GGAATGTG TAATAATTTA chr3L:6254886-6255006 85 9.78e-04 GTGATCTTCA GGAATGTG AGACCTAACC chr3R:6467779-6467899 25 9.78e-04 TACGCTGCGG AGAATGCG AACACGTATT chr2L:2731922-2732042 96 9.78e-04 TATGGGTGAA AGAATGCG CCCCAAGTGG chr3L:19084784-19084904 31 9.78e-04 GCCTAGGATA GGAATGTG CGGCATTGAT chr2R:13550979-13551099 13 9.78e-04 TGTCCAAAAA AGAATGCG GTTTCATACA chr2R:9184235-9184355 54 9.78e-04 CCTTCTATGT GGAATGTG TAGTATGACC chr2L:2839597-2839717 26 1.11e-03 GCTTTTCGCT GGCATTTT GAAAATTTTG chr3L:14432360-14432480 65 1.11e-03 CGATAGCTCA GGCATTTT ATCAATGGAT chr2R:11275363-11275483 30 1.11e-03 GGTTTTCAGC AGCATTTC GAAAATAAAA chr3L:8861151-8861271 71 1.11e-03 ACAGCCTCTC CAAATTCT TGAGACAAAC chr3R:10778319-10778439 62 1.11e-03 TCAAAAAAAC CAAATTCT TTATGACATT chr2L:3637836-3637956 83 1.11e-03 TCTGTGATCA CACATGCC CCCGTGTATT chr3L:20662044-20662164 32 1.11e-03 TTTTCTATAA CAAATTCT TGCATTAATT chr2L:10503760-10503880 93 1.11e-03 GCTACGCCAT GGCATTTT TATTTCAGTT chr2L:14449402-14449522 62 1.11e-03 TATACATAAA GGCATTTT GTGGATTTCC chr3L:19204541-19204661 80 1.11e-03 AGATATGTAA AGCATTTC AATCGCCAAA chr3L:12840021-12840141 105 1.11e-03 CATTATTTTT AGCATTCT TGTAGCCA chr3L:15996121-15996241 44 1.11e-03 AGCAATTCCG AGCATTTC CCCGATGACT chr3R:15459318-15459438 50 1.31e-03 TAAGGGGCAG AAAATTCT TGAGAAATAT chr3L:8855015-8855135 31 1.31e-03 TGTTTCTTCA AAAATTTC GAAATATTTC chr3R:14710783-14710903 70 1.31e-03 TACGTCAACA AAAATTCT TGGTATGCGC chr3R:7499154-7499274 70 1.31e-03 AATAAACAAG AAAATTCT GCTTACACTA chr3R:16552915-16553035 9 1.31e-03 GAAATTTT AAAATTTC GTTTTCCGCT chr3L:3729765-3729885 48 1.31e-03 AGTATCAGCT GAAATTTT GTTGCTGCCG chr3L:20445259-20445379 109 1.43e-03 AAATATCAAC GAAATTTG AAAG chr3R:15128519-15128639 15 1.43e-03 AAAGATATTT CGAATTTT GATTGACGAC chr2R:22901850-22901970 1 1.57e-03 . CAAATGTC GGTGGCTGGC chr3R:9484708-9484828 56 1.57e-03 CGACGACCAT CAAATGTC GAGATGCCAG chr2L:6998875-6998995 44 1.57e-03 CATTAGTCGA AGAATTTT TATAGCACAA chr3L:16059043-16059163 71 1.73e-03 TTTTAGTGGC AAAATGCT ATTGACCTAC chr2R:6222068-6222188 32 1.73e-03 CAGTTTCATT AAAATGTC TGGCGGCAAT chr2R:20632913-20633033 16 1.73e-03 AGTCAAGCAA GAAATGTT TTCTCAGCGA chr2L:4906011-4906131 101 1.73e-03 GATTTCGATT CAAATGCG ATATGcaaac chr2L:11188534-11188654 72 1.73e-03 AAAATTTTAT TGCATTCC AGCACTAAAA chr2R:18880565-18880685 49 1.85e-03 AACATTTGCA TAAATTCC AATACATTAT chr2R:11806009-11806129 52 1.85e-03 ACTTGCGGCA AAAATGCG ACCCGATCGA chrX:6721002-6721122 104 1.85e-03 TTGGTTCATT TAAATTCC AATAGATTG chrX:16726950-16727070 62 1.85e-03 TGATTTGTAG CACATTCT TAAGATTCTT chr3R:14709940-14710060 12 1.85e-03 CTTCGTCTTT CACATTTC GAAATCACAT chr3R:7661294-7661414 70 1.85e-03 AAAAAACATT TAAATTCC TTAGCGTTTT chrX:13821085-13821205 102 1.85e-03 TTGGCGCAAT GAAATGTG ATTAAATTTT chr3L:4388384-4388504 86 1.85e-03 AGTCTTTGCA TAAATTCC AGCTAAACTG chrX:10935699-10935819 94 1.85e-03 ACACAAGAAA CACATTTC TTTAGCCACG chr3R:26918994-26919114 35 1.99e-03 CAACTAGCTC GACATTTT TCACTCTCAC chr2L:5798785-5798905 47 1.99e-03 ATGATTGCCA AGAATGTT ATCAATCTTA chr2L:7241071-7241191 37 1.99e-03 GAAAAAAAAA CGAATGTG GGCCACTGGA chr2L:2840495-2840615 51 2.13e-03 CACTGGCTCA AGAATGTG TTAATTCGGT chr3R:9914442-9914562 85 2.27e-03 ATGTAAATTT TGAATTCG GTTTGATAGC chr3R:27660461-27660581 72 2.27e-03 GCTATTTTTA AGCATTTT GTTTTTTTTC chr2R:14264293-14264413 70 2.27e-03 CAGAATCCCA AGCATTTT TCCCCACCCA chrX:2163497-2163617 112 2.27e-03 TAAATATTTA CACATGTC T chr3R:14763753-14763873 83 2.43e-03 TGTCTTTCGA AGCATTTG ATGTTGATGT chr2R:13246452-13246572 106 2.43e-03 CCCACGCTGC AAAATTTT CACACAC chr2R:19544734-19544854 34 2.43e-03 AACCACCATA AACATGTC AGGCGGAGGC chr2L:9160229-9160349 68 2.43e-03 GGCTAATTGC CACATGCG GTGGCTACCA chr3L:8545596-8545716 62 2.57e-03 GTATATGGGG TACATTCC ATACGCGATA chr2L:14169594-14169714 51 2.57e-03 TAGAAGTCAC TACATTCC ACCGGATCGA chr3L:513833-513953 63 2.57e-03 AACACTTGTC TACATTCC TGAGCATATG chr2R:23796054-23796174 41 2.57e-03 AACTATTCCA TGAATGCT AAACAAACTG chr3R:31419644-31419764 58 2.57e-03 AGCGATGTGG TGAATGCT GTCGATTCGA chr2L:10689254-10689374 88 2.64e-03 CCTGGAGAGT CAAATGTT TATAATTTCG chr3R:29985337-29985457 108 2.64e-03 GTATGCAAAT CAAATGTT CTAAG chr3R:9131554-9131674 102 2.75e-03 TATGGCTGTA AAAATGTT TATTGCTTCT chr2R:21639372-21639492 36 2.75e-03 ATCAATGGGA AAAATGTT AATGGGGCTT chr2L:9678453-9678573 84 2.75e-03 TAAATAAACA AAAATGTT TAGGAGAAAT chr3L:4899229-4899349 80 2.90e-03 AAACTCTACA AAAATGTG TGCTTATCAG chr3R:9130038-9130158 35 2.90e-03 TAAATATAGA CACATTTT CCGAATATAT chr2L:17390924-17391044 75 2.90e-03 ataAGGAGAA CACATTTT TATTTTGGAT chr2R:16601833-16601953 68 2.98e-03 GTGGCCCAGC AACATTTT TGTCATATTT chrX:8450348-8450468 36 2.98e-03 TGATTTGCGA TAAATTCG AGGGCGGGTG chr3L:19196249-19196369 23 2.98e-03 TTGCTTGTAA AACATTTT TGTGTGTGAC chr3L:14223547-14223667 16 3.19e-03 TGGCTCCACA TAAATGCT TTATCTGGGA chr2L:428729-428849 21 3.34e-03 ATACCTGGGA TACATTCT TCGATGATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17828777-17828897 1.4e-05 36_[+1]_76 chr3L:18888724-18888844 1.4e-05 65_[+1]_47 chr2L:17741723-17741843 1.4e-05 70_[+1]_42 chr3L:11718049-11718169 1.4e-05 38_[+1]_74 chr2R:9072258-9072378 1.4e-05 36_[+1]_76 chr2L:19506442-19506562 1.4e-05 45_[+1]_67 chr3R:6295990-6296110 1.4e-05 35_[+1]_77 chr3R:10776151-10776271 1.4e-05 39_[+1]_73 chr3R:31127121-31127241 2.4e-05 5_[+1]_107 chr3L:885997-886117 2.4e-05 78_[+1]_34 chrX:10534733-10534853 2.4e-05 29_[+1]_83 chr3R:27247901-27248021 2.4e-05 71_[+1]_41 chr3R:15373088-15373208 3.4e-05 74_[+1]_38 chrX:3285344-3285464 3.4e-05 79_[+1]_33 chr2L:2727492-2727612 3.4e-05 77_[+1]_35 chr3L:610913-611033 3.4e-05 81_[+1]_31 chrX:11601873-11601993 3.4e-05 58_[+1]_54 chr3R:21586570-21586690 3.4e-05 61_[+1]_51 chr3L:1378385-1378505 3.4e-05 60_[+1]_52 chr2L:15000504-15000624 5.3e-05 47_[+1]_65 chr3R:9140746-9140866 5.3e-05 40_[+1]_72 chr3R:9596754-9596874 5.3e-05 62_[+1]_50 chr3L:12203123-12203243 5.3e-05 26_[+1]_86 chr3R:23790934-23791054 6.6e-05 49_[+1]_63 chr2R:7712473-7712593 6.6e-05 64_[+1]_48 chr3R:30051941-30052061 6.6e-05 57_[+1]_55 chr3L:3004325-3004445 6.6e-05 79_[+1]_33 chr3R:4824816-4824936 6.6e-05 8_[+1]_104 chr3R:14464692-14464812 0.00013 22_[+1]_90 chr3R:9499022-9499142 0.00013 58_[+1]_54 chr3R:10560067-10560187 0.00013 33_[+1]_79 chr2R:21260164-21260284 0.00013 6_[+1]_106 chrX:5898782-5898902 0.00013 49_[+1]_63 chr3L:13236057-13236177 0.00013 57_[+1]_55 chr3R:24022034-24022154 0.00013 48_[+1]_64 chr3R:12702142-12702262 0.00013 34_[+1]_78 chr2L:16621584-16621704 0.00013 74_[+1]_38 chrX:2168593-2168713 0.00016 100_[+1]_12 chr2R:15811521-15811641 0.00016 8_[+1]_104 chr2R:20773454-20773574 0.00016 7_[+1]_105 chr3L:22228297-22228417 0.00016 29_[+1]_83 chr2L:16839804-16839924 0.00016 20_[+1]_92 chr2R:7029800-7029920 0.00016 112_[+1] chr3L:7530973-7531093 0.00017 59_[+1]_53 chr2L:17425131-17425251 0.00022 20_[+1]_92 chr2L:1095703-1095823 0.00022 42_[+1]_70 chr2R:15986867-15986987 0.00022 8_[+1]_104 chr2L:16760940-16761060 0.00022 105_[+1]_7 chr2R:12083268-12083388 0.00022 98_[+1]_14 chr2R:9751005-9751125 0.00022 72_[+1]_40 chr3R:26621523-26621643 0.00022 26_[+1]_86 chr2R:18571047-18571167 0.00022 47_[+1]_65 chr2L:9679977-9680097 0.00022 88_[+1]_24 chr2L:8170929-8171049 0.00022 78_[+1]_34 chrX:18835175-18835295 0.00022 59_[+1]_53 chrX:15807535-15807655 0.00022 54_[+1]_58 chr2L:1579921-1580041 0.00022 65_[+1]_47 chr3R:25236306-25236426 0.00022 109_[+1]_3 chr3L:1573305-1573425 0.00022 12_[+1]_100 chr2L:8099249-8099369 0.00024 50_[+1]_62 chr3L:12304185-12304305 0.00024 55_[+1]_57 chr3R:15180341-15180461 0.00024 4_[+1]_108 chr2L:7486369-7486489 0.00024 82_[+1]_30 chr2R:12895429-12895549 0.00024 59_[+1]_53 chrX:11546237-11546357 0.00024 47_[+1]_65 chr2L:10677828-10677948 0.00024 37_[+1]_75 chr3L:11145229-11145349 0.00024 80_[+1]_32 chr3R:19466251-19466371 0.00024 63_[+1]_49 chr3L:15998394-15998514 0.00024 47_[+1]_65 chrX:12894073-12894193 0.00024 33_[+1]_79 chr2R:12016584-12016704 0.00024 86_[+1]_26 chr3L:562194-562314 0.00024 87_[+1]_25 chr2R:14310353-14310473 0.00024 79_[+1]_33 chr3R:13801323-13801443 0.00024 44_[+1]_68 chr3R:19001825-19001945 0.0003 33_[+1]_79 chr3R:31247366-31247486 0.0003 15_[+1]_97 chrX:10015429-10015549 0.0003 74_[+1]_38 chr3L:17505829-17505949 0.0003 65_[+1]_47 chr2L:19788503-19788623 0.0003 86_[+1]_26 chr2R:21094096-21094216 0.0003 93_[+1]_19 chr3R:14759072-14759192 0.0003 56_[+1]_56 chr3R:24551139-24551259 0.0003 3_[+1]_109 chr2R:11938327-11938447 0.0003 67_[+1]_45 chr3R:10537861-10537981 0.0003 101_[+1]_11 chr2L:4091885-4092005 0.0004 31_[+1]_81 chr3L:535489-535609 0.0004 93_[+1]_19 chr2R:22552295-22552415 0.0004 42_[+1]_70 chr2R:11187228-11187348 0.0004 67_[+1]_45 chr3R:21602633-21602753 0.0004 39_[+1]_73 chr2R:18127519-18127639 0.0004 46_[+1]_66 chr3L:3733152-3733272 0.0004 57_[+1]_55 chr3R:30544419-30544539 0.0004 2_[+1]_110 chrX:19602659-19602779 0.0004 85_[+1]_27 chrX:3455147-3455267 0.0004 5_[+1]_107 chr2R:12291683-12291803 0.0004 48_[+1]_64 chr3R:9137084-9137204 0.0004 44_[+1]_68 chr2R:21923429-21923549 0.0004 69_[+1]_43 chr2R:11667753-11667873 0.00047 77_[+1]_35 chr3R:21836766-21836886 0.00047 93_[+1]_19 chrX:2305276-2305396 0.00047 5_[+1]_107 chr3R:6230451-6230571 0.00047 46_[+1]_66 chrX:16910022-16910142 0.00047 68_[+1]_44 chr3R:14096055-14096175 0.00047 86_[+1]_26 chr2R:10676042-10676162 0.00061 27_[+1]_85 chr2R:7710940-7711060 0.00061 29_[+1]_83 chr3R:24526204-24526324 0.00061 21_[+1]_91 chr2L:8715646-8715766 0.00061 75_[+1]_37 chr2R:19297014-19297134 0.00061 83_[+1]_29 chrX:19188647-19188767 0.00061 69_[+1]_43 chr3R:14713337-14713457 0.00061 88_[+1]_24 chr2R:18325920-18326040 0.00061 70_[+1]_42 chr2L:9703862-9703982 0.00061 44_[+1]_68 chr3L:21381448-21381568 0.00061 21_[+1]_91 chr3L:16004229-16004349 0.00061 39_[+1]_73 chr3R:27740831-27740951 0.00061 65_[+1]_47 chr3R:28842610-28842730 0.00071 71_[+1]_41 chr2L:16321281-16321401 0.00071 86_[+1]_26 chr2L:8983742-8983862 0.00071 48_[+1]_64 chr2R:11443791-11443911 0.00071 42_[+1]_70 chr2R:14922030-14922150 0.00071 97_[+1]_15 chr2L:21832334-21832454 0.00071 53_[+1]_59 chrX:2218593-2218713 0.00071 59_[+1]_53 chr2R:14974470-14974590 0.00071 8_[+1]_104 chr2L:7407806-7407926 0.00071 19_[+1]_93 chr3L:2121840-2121960 0.00071 43_[+1]_69 chr3R:21092144-21092264 0.00076 42_[+1]_70 chr3L:10802946-10803066 0.00076 96_[+1]_16 chr2L:5218002-5218122 0.00076 72_[+1]_40 chr2L:21073426-21073546 0.00076 60_[+1]_52 chrX:11393107-11393227 0.00076 56_[+1]_56 chr3R:20622436-20622556 0.00076 92_[+1]_20 chrX:19504505-19504625 0.00076 57_[+1]_55 chr2R:19197385-19197505 0.00076 22_[+1]_90 chr3L:7786239-7786359 0.00076 36_[+1]_76 chr3R:7783072-7783192 0.00076 25_[+1]_87 chr3R:15923331-15923451 0.00089 55_[+1]_57 chrX:14861025-14861145 0.00089 68_[+1]_44 chr3R:24889470-24889590 0.00089 20_[+1]_92 chrX:1282583-1282703 0.00089 75_[+1]_37 chr3R:13333167-13333287 0.00089 58_[+1]_54 chr3R:15616114-15616234 0.00089 21_[+1]_91 chr2R:11192104-11192224 0.00089 24_[+1]_88 chr3R:8844116-8844236 0.00089 83_[+1]_29 chr3R:7066381-7066501 0.00089 92_[+1]_20 chr2R:13247946-13248066 0.00089 40_[+1]_72 chr2L:10802090-10802210 0.00089 50_[+1]_62 chrX:10939054-10939174 0.00098 57_[+1]_55 chrX:16100865-16100985 0.00098 37_[+1]_75 chr3L:16028084-16028204 0.00098 33_[+1]_79 chr2R:7948825-7948945 0.00098 75_[+1]_37 chr3L:8746983-8747103 0.00098 98_[+1]_14 chr3L:6254886-6255006 0.00098 84_[+1]_28 chr3R:6467779-6467899 0.00098 24_[+1]_88 chr2L:2731922-2732042 0.00098 95_[+1]_17 chr3L:19084784-19084904 0.00098 30_[+1]_82 chr2R:13550979-13551099 0.00098 12_[+1]_100 chr2R:9184235-9184355 0.00098 53_[+1]_59 chr2L:2839597-2839717 0.0011 25_[+1]_87 chr3L:14432360-14432480 0.0011 64_[+1]_48 chr2R:11275363-11275483 0.0011 29_[+1]_83 chr3L:8861151-8861271 0.0011 70_[+1]_42 chr3R:10778319-10778439 0.0011 61_[+1]_51 chr2L:3637836-3637956 0.0011 82_[+1]_30 chr3L:20662044-20662164 0.0011 31_[+1]_81 chr2L:10503760-10503880 0.0011 92_[+1]_20 chr2L:14449402-14449522 0.0011 61_[+1]_51 chr3L:19204541-19204661 0.0011 79_[+1]_33 chr3L:12840021-12840141 0.0011 104_[+1]_8 chr3L:15996121-15996241 0.0011 43_[+1]_69 chr3R:15459318-15459438 0.0013 49_[+1]_63 chr3L:8855015-8855135 0.0013 30_[+1]_82 chr3R:14710783-14710903 0.0013 69_[+1]_43 chr3R:7499154-7499274 0.0013 69_[+1]_43 chr3R:16552915-16553035 0.0013 8_[+1]_104 chr3L:3729765-3729885 0.0013 47_[+1]_65 chr3L:20445259-20445379 0.0014 108_[+1]_4 chr3R:15128519-15128639 0.0014 14_[+1]_98 chr2R:22901850-22901970 0.0016 [+1]_112 chr3R:9484708-9484828 0.0016 55_[+1]_57 chr2L:6998875-6998995 0.0016 43_[+1]_69 chr3L:16059043-16059163 0.0017 70_[+1]_42 chr2R:6222068-6222188 0.0017 31_[+1]_81 chr2R:20632913-20633033 0.0017 15_[+1]_97 chr2L:4906011-4906131 0.0017 100_[+1]_12 chr2L:11188534-11188654 0.0017 71_[+1]_41 chr2R:18880565-18880685 0.0019 48_[+1]_64 chr2R:11806009-11806129 0.0019 51_[+1]_61 chrX:6721002-6721122 0.0019 103_[+1]_9 chrX:16726950-16727070 0.0019 61_[+1]_51 chr3R:14709940-14710060 0.0019 11_[+1]_101 chr3R:7661294-7661414 0.0019 69_[+1]_43 chrX:13821085-13821205 0.0019 101_[+1]_11 chr3L:4388384-4388504 0.0019 85_[+1]_27 chrX:10935699-10935819 0.0019 93_[+1]_19 chr3R:26918994-26919114 0.002 34_[+1]_78 chr2L:5798785-5798905 0.002 46_[+1]_66 chr2L:7241071-7241191 0.002 36_[+1]_76 chr2L:2840495-2840615 0.0021 50_[+1]_62 chr3R:9914442-9914562 0.0023 84_[+1]_28 chr3R:27660461-27660581 0.0023 71_[+1]_41 chr2R:14264293-14264413 0.0023 69_[+1]_43 chrX:2163497-2163617 0.0023 111_[+1]_1 chr3R:14763753-14763873 0.0024 82_[+1]_30 chr2R:13246452-13246572 0.0024 105_[+1]_7 chr2R:19544734-19544854 0.0024 33_[+1]_79 chr2L:9160229-9160349 0.0024 67_[+1]_45 chr3L:8545596-8545716 0.0026 61_[+1]_51 chr2L:14169594-14169714 0.0026 50_[+1]_62 chr3L:513833-513953 0.0026 62_[+1]_50 chr2R:23796054-23796174 0.0026 40_[+1]_72 chr3R:31419644-31419764 0.0026 57_[+1]_55 chr2L:10689254-10689374 0.0026 87_[+1]_25 chr3R:29985337-29985457 0.0026 107_[+1]_5 chr3R:9131554-9131674 0.0027 101_[+1]_11 chr2R:21639372-21639492 0.0027 35_[+1]_77 chr2L:9678453-9678573 0.0027 83_[+1]_29 chr3L:4899229-4899349 0.0029 79_[+1]_33 chr3R:9130038-9130158 0.0029 34_[+1]_78 chr2L:17390924-17391044 0.0029 74_[+1]_38 chr2R:16601833-16601953 0.003 67_[+1]_45 chrX:8450348-8450468 0.003 35_[+1]_77 chr3L:19196249-19196369 0.003 22_[+1]_90 chr3L:14223547-14223667 0.0032 15_[+1]_97 chr2L:428729-428849 0.0033 20_[+1]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRAATKYY width=8 seqs=224 chrX:17828777-17828897 ( 37) GGAATTCC 1 chr3L:18888724-18888844 ( 66) GGAATTCC 1 chr2L:17741723-17741843 ( 71) GGAATTCC 1 chr3L:11718049-11718169 ( 39) GGAATTCC 1 chr2R:9072258-9072378 ( 37) GGAATTCC 1 chr2L:19506442-19506562 ( 46) GGAATTCC 1 chr3R:6295990-6296110 ( 36) GGAATTCC 1 chr3R:10776151-10776271 ( 40) GGAATTCC 1 chr3R:31127121-31127241 ( 6) GGAATGCC 1 chr3L:885997-886117 ( 79) GGAATGCC 1 chrX:10534733-10534853 ( 30) GGAATGCC 1 chr3R:27247901-27248021 ( 72) GGAATGCC 1 chr3R:15373088-15373208 ( 75) GGCATTCC 1 chrX:3285344-3285464 ( 80) GGCATTCC 1 chr2L:2727492-2727612 ( 78) GGCATTCC 1 chr3L:610913-611033 ( 82) GGCATTCC 1 chrX:11601873-11601993 ( 59) GGCATTCC 1 chr3R:21586570-21586690 ( 62) GGCATTCC 1 chr3L:1378385-1378505 ( 61) GGCATTCC 1 chr2L:15000504-15000624 ( 48) GAAATTCC 1 chr3R:9140746-9140866 ( 41) GAAATTCC 1 chr3R:9596754-9596874 ( 63) GAAATTCC 1 chr3L:12203123-12203243 ( 27) GAAATTCC 1 chr3R:23790934-23791054 ( 50) CGAATTCC 1 chr2R:7712473-7712593 ( 65) CGAATTCC 1 chr3R:30051941-30052061 ( 58) CGAATTCC 1 chr3L:3004325-3004445 ( 80) CGAATTCC 1 chr3R:4824816-4824936 ( 9) CGAATTCC 1 chr3R:14464692-14464812 ( 23) AGAATTCC 1 chr3R:9499022-9499142 ( 59) GGAATTCT 1 chr3R:10560067-10560187 ( 34) GGAATTTC 1 chr2R:21260164-21260284 ( 7) GGAATTTC 1 chrX:5898782-5898902 ( 50) GGAATTTC 1 chr3L:13236057-13236177 ( 58) GGAATTTC 1 chr3R:24022034-24022154 ( 49) AGAATTCC 1 chr3R:12702142-12702262 ( 35) GGAATTTC 1 chr2L:16621584-16621704 ( 75) GGAATTTC 1 chrX:2168593-2168713 ( 101) GAAATGCC 1 chr2R:15811521-15811641 ( 9) GAAATGCC 1 chr2R:20773454-20773574 ( 8) GGAATTCG 1 chr3L:22228297-22228417 ( 30) GAAATGCC 1 chr2L:16839804-16839924 ( 21) GGAATTCG 1 chr2R:7029800-7029920 ( 113) GAAATGCC 1 chr3L:7530973-7531093 ( 60) CGAATGCC 1 chr2L:17425131-17425251 ( 21) AGAATGCC 1 chr2L:1095703-1095823 ( 43) GGAATGCT 1 chr2R:15986867-15986987 ( 9) GACATTCC 1 chr2L:16760940-16761060 ( 106) GACATTCC 1 chr2R:12083268-12083388 ( 99) GACATTCC 1 chr2R:9751005-9751125 ( 73) AGAATGCC 1 chr3R:26621523-26621643 ( 27) GGAATGCT 1 chr2R:18571047-18571167 ( 48) GACATTCC 1 chr2L:9679977-9680097 ( 89) GGAATGCT 1 chr2L:8170929-8171049 ( 79) GGAATGTC 1 chrX:18835175-18835295 ( 60) GGAATGTC 1 chrX:15807535-15807655 ( 55) GGAATGTC 1 chr2L:1579921-1580041 ( 66) GGAATGTC 1 chr3R:25236306-25236426 ( 110) AGAATGCC 1 chr3L:1573305-1573425 ( 13) GGAATGTC 1 chr2L:8099249-8099369 ( 51) GGAATGCG 1 chr3L:12304185-12304305 ( 56) GGAATGCG 1 chr3R:15180341-15180461 ( 5) CGCATTCC 1 chr2L:7486369-7486489 ( 83) GGAATGCG 1 chr2R:12895429-12895549 ( 60) GGAATGCG 1 chrX:11546237-11546357 ( 48) GGAATGCG 1 chr2L:10677828-10677948 ( 38) CGCATTCC 1 chr3L:11145229-11145349 ( 81) CGCATTCC 1 chr3R:19466251-19466371 ( 64) GGAATGCG 1 chr3L:15998394-15998514 ( 48) CGCATTCC 1 chrX:12894073-12894193 ( 34) CGCATTCC 1 chr2R:12016584-12016704 ( 87) GGAATGCG 1 chr3L:562194-562314 ( 88) GGAATGCG 1 chr2R:14310353-14310473 ( 80) GGAATGCG 1 chr3R:13801323-13801443 ( 45) GGAATGCG 1 chr3R:19001825-19001945 ( 34) AGCATTCC 1 chr3R:31247366-31247486 ( 16) CAAATTCC 1 chrX:10015429-10015549 ( 75) GGCATTTC 1 chr3L:17505829-17505949 ( 66) AGCATTCC 1 chr2L:19788503-19788623 ( 87) GGCATTTC 1 chr2R:21094096-21094216 ( 94) CAAATTCC 1 chr3R:14759072-14759192 ( 57) GGCATTTC 1 chr3R:24551139-24551259 ( 4) GGCATTTC 1 chr2R:11938327-11938447 ( 68) AGCATTCC 1 chr3R:10537861-10537981 ( 102) GGCATTTC 1 chr2L:4091885-4092005 ( 32) AAAATTCC 1 chr3L:535489-535609 ( 94) AAAATTCC 1 chr2R:22552295-22552415 ( 43) GAAATTCT 1 chr2R:11187228-11187348 ( 68) GAAATTCT 1 chr3R:21602633-21602753 ( 40) AAAATTCC 1 chr2R:18127519-18127639 ( 47) AAAATTCC 1 chr3L:3733152-3733272 ( 58) AAAATTCC 1 chr3R:30544419-30544539 ( 3) GAAATTCT 1 chrX:19602659-19602779 ( 86) AAAATTCC 1 chrX:3455147-3455267 ( 6) AAAATTCC 1 chr2R:12291683-12291803 ( 49) AAAATTCC 1 chr3R:9137084-9137204 ( 45) AAAATTCC 1 chr2R:21923429-21923549 ( 70) GAAATTCT 1 chr2R:11667753-11667873 ( 78) CGCATGCC 1 chr3R:21836766-21836886 ( 94) GAAATTCG 1 chrX:2305276-2305396 ( 6) CGAATTTC 1 chr3R:6230451-6230571 ( 47) CGAATTCT 1 chrX:16910022-16910142 ( 69) CGAATTCT 1 chr3R:14096055-14096175 ( 87) CGAATTCT 1 chr2R:10676042-10676162 ( 28) CGAATTCG 1 chr2R:7710940-7711060 ( 30) GGAATTTT 1 chr3R:24526204-24526324 ( 22) GGAATTTT 1 chr2L:8715646-8715766 ( 76) GGAATTTT 1 chr2R:19297014-19297134 ( 84) GGAATTTT 1 chrX:19188647-19188767 ( 70) GGAATTTT 1 chr3R:14713337-14713457 ( 89) GGAATTTT 1 chr2R:18325920-18326040 ( 71) GGAATTTT 1 chr2L:9703862-9703982 ( 45) GGAATTTT 1 chr3L:21381448-21381568 ( 22) GGAATTTT 1 chr3L:16004229-16004349 ( 40) GGAATTTT 1 chr3R:27740831-27740951 ( 66) GGAATTTT 1 chr3R:28842610-28842730 ( 72) AGAATTCG 1 chr2L:16321281-16321401 ( 87) GAAATGCT 1 chr2L:8983742-8983862 ( 49) AAAATGCC 1 chr2R:11443791-11443911 ( 43) AAAATGCC 1 chr2R:14922030-14922150 ( 98) AGAATTCG 1 chr2L:21832334-21832454 ( 54) GGAATTTG 1 chrX:2218593-2218713 ( 60) GGAATTTG 1 chr2R:14974470-14974590 ( 9) AAAATGCC 1 chr2L:7407806-7407926 ( 20) AGAATTCG 1 chr3L:2121840-2121960 ( 44) AAAATGCC 1 chr3R:21092144-21092264 ( 43) CACATTCC 1 chr3L:10802946-10803066 ( 97) CACATTCC 1 chr2L:5218002-5218122 ( 73) CACATTCC 1 chr2L:21073426-21073546 ( 61) CACATTCC 1 chrX:11393107-11393227 ( 57) CACATTCC 1 chr3R:20622436-20622556 ( 93) GAAATGCG 1 chrX:19504505-19504625 ( 58) CACATTCC 1 chr2R:19197385-19197505 ( 23) GAAATGCG 1 chr3L:7786239-7786359 ( 37) CACATTCC 1 chr3R:7783072-7783192 ( 26) CACATTCC 1 chr3R:15923331-15923451 ( 56) GGAATGTT 1 chrX:14861025-14861145 ( 69) AGAATGCT 1 chr3R:24889470-24889590 ( 21) AACATTCC 1 chrX:1282583-1282703 ( 76) GGAATGTT 1 chr3R:13333167-13333287 ( 59) AGAATGCT 1 chr3R:15616114-15616234 ( 22) AACATTCC 1 chr2R:11192104-11192224 ( 25) AACATTCC 1 chr3R:8844116-8844236 ( 84) AACATTCC 1 chr3R:7066381-7066501 ( 93) GGAATGTT 1 chr2R:13247946-13248066 ( 41) AACATTCC 1 chr2L:10802090-10802210 ( 51) GGAATGTT 1 chrX:10939054-10939174 ( 58) GGAATGTG 1 chrX:16100865-16100985 ( 38) GGAATGTG 1 chr3L:16028084-16028204 ( 34) TGAATTCC 1 chr2R:7948825-7948945 ( 76) CGCATTCT 1 chr3L:8746983-8747103 ( 99) GGAATGTG 1 chr3L:6254886-6255006 ( 85) GGAATGTG 1 chr3R:6467779-6467899 ( 25) AGAATGCG 1 chr2L:2731922-2732042 ( 96) AGAATGCG 1 chr3L:19084784-19084904 ( 31) GGAATGTG 1 chr2R:13550979-13551099 ( 13) AGAATGCG 1 chr2R:9184235-9184355 ( 54) GGAATGTG 1 chr2L:2839597-2839717 ( 26) GGCATTTT 1 chr3L:14432360-14432480 ( 65) GGCATTTT 1 chr2R:11275363-11275483 ( 30) AGCATTTC 1 chr3L:8861151-8861271 ( 71) CAAATTCT 1 chr3R:10778319-10778439 ( 62) CAAATTCT 1 chr2L:3637836-3637956 ( 83) CACATGCC 1 chr3L:20662044-20662164 ( 32) CAAATTCT 1 chr2L:10503760-10503880 ( 93) GGCATTTT 1 chr2L:14449402-14449522 ( 62) GGCATTTT 1 chr3L:19204541-19204661 ( 80) AGCATTTC 1 chr3L:12840021-12840141 ( 105) AGCATTCT 1 chr3L:15996121-15996241 ( 44) AGCATTTC 1 chr3R:15459318-15459438 ( 50) AAAATTCT 1 chr3L:8855015-8855135 ( 31) AAAATTTC 1 chr3R:14710783-14710903 ( 70) AAAATTCT 1 chr3R:7499154-7499274 ( 70) AAAATTCT 1 chr3R:16552915-16553035 ( 9) AAAATTTC 1 chr3L:3729765-3729885 ( 48) GAAATTTT 1 chr3L:20445259-20445379 ( 109) GAAATTTG 1 chr3R:15128519-15128639 ( 15) CGAATTTT 1 chr2R:22901850-22901970 ( 1) CAAATGTC 1 chr3R:9484708-9484828 ( 56) CAAATGTC 1 chr2L:6998875-6998995 ( 44) AGAATTTT 1 chr3L:16059043-16059163 ( 71) AAAATGCT 1 chr2R:6222068-6222188 ( 32) AAAATGTC 1 chr2R:20632913-20633033 ( 16) GAAATGTT 1 chr2L:4906011-4906131 ( 101) CAAATGCG 1 chr2L:11188534-11188654 ( 72) TGCATTCC 1 chr2R:18880565-18880685 ( 49) TAAATTCC 1 chr2R:11806009-11806129 ( 52) AAAATGCG 1 chrX:6721002-6721122 ( 104) TAAATTCC 1 chrX:16726950-16727070 ( 62) CACATTCT 1 chr3R:14709940-14710060 ( 12) CACATTTC 1 chr3R:7661294-7661414 ( 70) TAAATTCC 1 chrX:13821085-13821205 ( 102) GAAATGTG 1 chr3L:4388384-4388504 ( 86) TAAATTCC 1 chrX:10935699-10935819 ( 94) CACATTTC 1 chr3R:26918994-26919114 ( 35) GACATTTT 1 chr2L:5798785-5798905 ( 47) AGAATGTT 1 chr2L:7241071-7241191 ( 37) CGAATGTG 1 chr2L:2840495-2840615 ( 51) AGAATGTG 1 chr3R:9914442-9914562 ( 85) TGAATTCG 1 chr3R:27660461-27660581 ( 72) AGCATTTT 1 chr2R:14264293-14264413 ( 70) AGCATTTT 1 chrX:2163497-2163617 ( 112) CACATGTC 1 chr3R:14763753-14763873 ( 83) AGCATTTG 1 chr2R:13246452-13246572 ( 106) AAAATTTT 1 chr2R:19544734-19544854 ( 34) AACATGTC 1 chr2L:9160229-9160349 ( 68) CACATGCG 1 chr3L:8545596-8545716 ( 62) TACATTCC 1 chr2L:14169594-14169714 ( 51) TACATTCC 1 chr3L:513833-513953 ( 63) TACATTCC 1 chr2R:23796054-23796174 ( 41) TGAATGCT 1 chr3R:31419644-31419764 ( 58) TGAATGCT 1 chr2L:10689254-10689374 ( 88) CAAATGTT 1 chr3R:29985337-29985457 ( 108) CAAATGTT 1 chr3R:9131554-9131674 ( 102) AAAATGTT 1 chr2R:21639372-21639492 ( 36) AAAATGTT 1 chr2L:9678453-9678573 ( 84) AAAATGTT 1 chr3L:4899229-4899349 ( 80) AAAATGTG 1 chr3R:9130038-9130158 ( 35) CACATTTT 1 chr2L:17390924-17391044 ( 75) CACATTTT 1 chr2R:16601833-16601953 ( 68) AACATTTT 1 chrX:8450348-8450468 ( 36) TAAATTCG 1 chr3L:19196249-19196369 ( 23) AACATTTT 1 chr3L:14223547-14223667 ( 16) TAAATGCT 1 chr2L:428729-428849 ( 21) TACATTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.57679 E= 6.9e-074 -12 -2 112 -212 54 -1445 145 -1445 127 52 -1445 -1445 178 -1445 -1445 -1445 -1445 -1445 -1445 178 -1445 -1445 70 118 -1445 163 -1445 30 -1445 134 -20 0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 224 E= 6.9e-074 0.267857 0.205357 0.459821 0.066964 0.424107 0.000000 0.575893 0.000000 0.700893 0.299107 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.343750 0.656250 0.000000 0.642857 0.000000 0.357143 0.000000 0.526786 0.183036 0.290179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAATKYY MEME-1 regular expression -------------------------------------------------------------------------------- [GAC][GA][AC]AT[TG][CT][CT] -------------------------------------------------------------------------------- Time 8.32 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATATTT MEME-2 width = 8 sites = 36 llr = 321 E-value = 4.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8aa:a:1: pos.-specific C :::1:::: probability G 2::::::: matrix T :::9:a9a bits 2.3 2.0 1.8 ** ** * 1.6 ** **** Relative 1.4 ******* Entropy 1.1 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23662951-23663071 19 5.14e-05 GAGCTATTCG AAATATTT AACACCGTTT chrX:10015429-10015549 33 5.14e-05 TCGCTTGATA AAATATTT GAAATTCATT chr3L:8855015-8855135 40 5.14e-05 AAAAATTTCG AAATATTT CCCTTTGCTG chr2R:18127519-18127639 22 5.14e-05 CCGCCCACAA AAATATTT ATTGCCCACT chr2R:9751005-9751125 63 5.14e-05 ATGCGAAAAT AAATATTT AAAGAATGCC chr3L:20444203-20444323 32 5.14e-05 TAAATTATAA AAATATTT CAGTGTGTCA chr2R:12265537-12265657 21 5.14e-05 TAGATGACTA AAATATTT TGGCTCTTTC chr2R:21639372-21639492 6 5.14e-05 CACAA AAATATTT CAAACATTTG chr2R:19297014-19297134 10 5.14e-05 AAATTGTCT AAATATTT TCAAATATCA chr3R:9130038-9130158 105 5.14e-05 GCCAAAAGAA AAATATTT TTCTATCA chr3R:15128519-15128639 64 5.14e-05 GTCATCCAGC AAATATTT CAAAGCTTGA chr3L:22228297-22228417 86 5.14e-05 CATGAATTTC AAATATTT TTTCTCCACG chr2L:4906011-4906131 37 5.14e-05 TCATTTGGAT AAATATTT GAAATATTTG chr2R:21260164-21260284 27 5.14e-05 AATGATTTCG AAATATTT CGCTTCTTTT chrX:15807535-15807655 14 5.14e-05 CACAAGATAA AAATATTT TTTAATGTTC chr3R:25236306-25236426 66 5.14e-05 GACAAAAGTG AAATATTT GGACTCACCT chr2L:428729-428849 95 5.14e-05 TGGCCAGCAG AAATATTT GACCATAATA chr2L:16839804-16839924 106 5.14e-05 CAGATCTAGA AAATATTT GTGCCGC chr3L:13236057-13236177 74 5.14e-05 TCAGCTGTTG AAATATTT GAGATTCGTC chr3R:7783072-7783192 112 5.14e-05 GTTATCGAGC AAATATTT A chr3R:19080793-19080913 30 5.14e-05 AATCAACGTG AAATATTT GGCACACATT chr3R:9596754-9596874 99 5.14e-05 TTTAAGCCAT AAATATTT AATTGTATTT chrX:2163497-2163617 103 5.14e-05 GGCGGAACGT AAATATTT ACACATGTCT chr2L:16321281-16321401 20 8.87e-05 CCCGCGCTTC GAATATTT AAAATTGCTT chrX:14861025-14861145 82 8.87e-05 ATGCTGGCAT GAATATTT ATGCTGTAAT chr2L:17741723-17741843 57 8.87e-05 CGGCATAAAT GAATATTT GATGCTGGAA chr2R:22901850-22901970 64 8.87e-05 TGAGCTTTTC GAATATTT CGTAACCAGT chr3R:27660461-27660581 101 8.87e-05 GCTATTCTGT GAATATTT CTTTTTATTT chr2R:21923429-21923549 87 8.87e-05 TGGGGGTGAA GAATATTT ATGGGCTCAG chr2R:7710940-7711060 91 1.25e-04 TTAGGTGACG AAACATTT GTATACCTTC chr3L:10802946-10803066 84 1.25e-04 CATTGTAAAC AAACATTT GGGGCCACAT chr3R:31247366-31247486 5 1.25e-04 TGGA AAACATTT AACCAAATTC chr3R:10776151-10776271 75 1.25e-04 TATATATTCT AAACATTT TTGGGCACCA chr3L:2121840-2121960 69 1.25e-04 TTAGATAAAT AAACATTT GCCGAAAGGC chr3R:9137084-9137204 72 2.04e-04 ATACATACGA AAATATAT AGTCGCGCAT chr2L:7241071-7241191 112 2.04e-04 ATTCCACTTG AAATATAT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23662951-23663071 5.1e-05 18_[+2]_94 chrX:10015429-10015549 5.1e-05 32_[+2]_80 chr3L:8855015-8855135 5.1e-05 39_[+2]_73 chr2R:18127519-18127639 5.1e-05 21_[+2]_91 chr2R:9751005-9751125 5.1e-05 62_[+2]_50 chr3L:20444203-20444323 5.1e-05 31_[+2]_81 chr2R:12265537-12265657 5.1e-05 20_[+2]_92 chr2R:21639372-21639492 5.1e-05 5_[+2]_107 chr2R:19297014-19297134 5.1e-05 9_[+2]_103 chr3R:9130038-9130158 5.1e-05 104_[+2]_8 chr3R:15128519-15128639 5.1e-05 63_[+2]_49 chr3L:22228297-22228417 5.1e-05 85_[+2]_27 chr2L:4906011-4906131 5.1e-05 36_[+2]_76 chr2R:21260164-21260284 5.1e-05 26_[+2]_86 chrX:15807535-15807655 5.1e-05 13_[+2]_99 chr3R:25236306-25236426 5.1e-05 65_[+2]_47 chr2L:428729-428849 5.1e-05 94_[+2]_18 chr2L:16839804-16839924 5.1e-05 105_[+2]_7 chr3L:13236057-13236177 5.1e-05 73_[+2]_39 chr3R:7783072-7783192 5.1e-05 111_[+2]_1 chr3R:19080793-19080913 5.1e-05 29_[+2]_83 chr3R:9596754-9596874 5.1e-05 98_[+2]_14 chrX:2163497-2163617 5.1e-05 102_[+2]_10 chr2L:16321281-16321401 8.9e-05 19_[+2]_93 chrX:14861025-14861145 8.9e-05 81_[+2]_31 chr2L:17741723-17741843 8.9e-05 56_[+2]_56 chr2R:22901850-22901970 8.9e-05 63_[+2]_49 chr3R:27660461-27660581 8.9e-05 100_[+2]_12 chr2R:21923429-21923549 8.9e-05 86_[+2]_26 chr2R:7710940-7711060 0.00013 90_[+2]_22 chr3L:10802946-10803066 0.00013 83_[+2]_29 chr3R:31247366-31247486 0.00013 4_[+2]_108 chr3R:10776151-10776271 0.00013 74_[+2]_38 chr3L:2121840-2121960 0.00013 68_[+2]_44 chr3R:9137084-9137204 0.0002 71_[+2]_41 chr2L:7241071-7241191 0.0002 111_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATATTT width=8 seqs=36 chr3R:23662951-23663071 ( 19) AAATATTT 1 chrX:10015429-10015549 ( 33) AAATATTT 1 chr3L:8855015-8855135 ( 40) AAATATTT 1 chr2R:18127519-18127639 ( 22) AAATATTT 1 chr2R:9751005-9751125 ( 63) AAATATTT 1 chr3L:20444203-20444323 ( 32) AAATATTT 1 chr2R:12265537-12265657 ( 21) AAATATTT 1 chr2R:21639372-21639492 ( 6) AAATATTT 1 chr2R:19297014-19297134 ( 10) AAATATTT 1 chr3R:9130038-9130158 ( 105) AAATATTT 1 chr3R:15128519-15128639 ( 64) AAATATTT 1 chr3L:22228297-22228417 ( 86) AAATATTT 1 chr2L:4906011-4906131 ( 37) AAATATTT 1 chr2R:21260164-21260284 ( 27) AAATATTT 1 chrX:15807535-15807655 ( 14) AAATATTT 1 chr3R:25236306-25236426 ( 66) AAATATTT 1 chr2L:428729-428849 ( 95) AAATATTT 1 chr2L:16839804-16839924 ( 106) AAATATTT 1 chr3L:13236057-13236177 ( 74) AAATATTT 1 chr3R:7783072-7783192 ( 112) AAATATTT 1 chr3R:19080793-19080913 ( 30) AAATATTT 1 chr3R:9596754-9596874 ( 99) AAATATTT 1 chrX:2163497-2163617 ( 103) AAATATTT 1 chr2L:16321281-16321401 ( 20) GAATATTT 1 chrX:14861025-14861145 ( 82) GAATATTT 1 chr2L:17741723-17741843 ( 57) GAATATTT 1 chr2R:22901850-22901970 ( 64) GAATATTT 1 chr3R:27660461-27660581 ( 101) GAATATTT 1 chr2R:21923429-21923549 ( 87) GAATATTT 1 chr2R:7710940-7711060 ( 91) AAACATTT 1 chr3L:10802946-10803066 ( 84) AAACATTT 1 chr3R:31247366-31247486 ( 5) AAACATTT 1 chr3R:10776151-10776271 ( 75) AAACATTT 1 chr3L:2121840-2121960 ( 69) AAACATTT 1 chr3R:9137084-9137204 ( 72) AAATATAT 1 chr2L:7241071-7241191 ( 112) AAATATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 4.1e-005 152 -1181 -34 -1181 178 -1181 -1181 -1181 178 -1181 -1181 -1181 -1181 -58 -1181 157 178 -1181 -1181 -1181 -1181 -1181 -1181 178 -239 -1181 -1181 170 -1181 -1181 -1181 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.1e-005 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.138889 0.000000 0.861111 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.055556 0.000000 0.000000 0.944444 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-2 regular expression -------------------------------------------------------------------------------- AAATATTT -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAAAA MEME-3 width = 8 sites = 41 llr = 340 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7aa1aaa7 pos.-specific C 3::9:::1 probability G :::::::: matrix T :::::::2 bits 2.3 2.0 1.8 ** ** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ******* (12.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11275363-11275483 59 3.68e-05 CAAGCGAAAT AAACAAAA GAAGTGAACG chr3R:7438783-7438903 112 3.68e-05 gaaccgaaca aaacaaaa c chr3L:3733152-3733272 85 3.68e-05 AAAAAGAATA AAACAAAA AAATGCCGAA chr2R:11443791-11443911 72 3.68e-05 AGCCAAACCG AAACAAAA AATGTGTAAA chr2R:18142512-18142632 28 3.68e-05 CAAAAAACGA AAACAAAA CTTTCACTGC chr3R:10778319-10778439 31 3.68e-05 GCTTGTATAT AAACAAAA CCATGGCAGA chrX:10534733-10534853 101 3.68e-05 CGAGCGacaa aaacaaaa acaaacagaa chr2L:10677828-10677948 61 3.68e-05 TACCAAAAAA AAACAAAA AATCCGCCGA chr3L:7786239-7786359 27 3.68e-05 GAGCAAGACA AAACAAAA AACACATTCC chrX:15807535-15807655 41 3.68e-05 CCCTGAACAC AAACAAAA ATTTAAGGAA chr3L:562194-562314 20 3.68e-05 GGAAAAACGC AAACAAAA CTGAGAAAAA chr2L:11188534-11188654 52 3.68e-05 AAATCGGACA AAACAAAA ATAAAATTTT chr2R:14310353-14310473 64 3.68e-05 TTAGGAAGGC AAACAAAA ACATCCGTGG chr3L:15996121-15996241 75 3.68e-05 CCATTAATTT AAACAAAA TTCTAGCCGC chr3R:21092144-21092264 107 6.30e-05 GATCAGTGAG CAACAAAA GAGCCT chrX:16100865-16100985 52 6.30e-05 TGTGTAAAAA CAACAAAA CATGCACGCA chr3R:20622436-20622556 40 6.30e-05 GAGGAATTTA CAACAAAA ACAATGAATT chr3R:8844116-8844236 14 6.30e-05 CGCCACAAAC CAACAAAA AACTACATTT chrX:16900452-16900572 21 6.30e-05 acaacaacaa caacaaAA GAGCCCGGAT chr2L:9703862-9703982 61 6.30e-05 TTGCCGGCTA CAACAAAA GTATTATCAG chr2L:1930849-1930969 98 8.93e-05 TTCTCGTAGT AAACAAAC GCTGGAGCCA chr2L:16760940-16761060 63 8.93e-05 TTTCGGGCGA AAACAAAC AATGCGTGGT chr2R:11806009-11806129 88 8.93e-05 ATTGAGTGAA AAACAAAC CCATAGCGGA chr3L:20662044-20662164 96 8.93e-05 CCTCTGAGCC AAACAAAC AAAGAGGCGG chr2R:23796054-23796174 49 8.93e-05 CATGAATGCT AAACAAAC TGAAATAGCA chr2R:18880565-18880685 15 1.26e-04 AAAACTACAA AAACAAAT ATCAACAAAC chrX:2305276-2305396 47 1.26e-04 GTTTGGGCAT AAACAAAT TACATTTTTC chrX:10015429-10015549 16 1.26e-04 TAATGGGCAT AAACAAAT CGCTTGATAA chr3L:8855015-8855135 65 1.26e-04 CTGATTTATT AAACAAAT ATTTGACCAA chr3L:4388384-4388504 3 1.26e-04 GA AAACAAAT CAATAACATT chrX:17828777-17828897 18 1.45e-04 acaaccacaa caacaaAC TGCGACGTTG chr3L:16480167-16480287 86 1.71e-04 TGTATATGGC CAACAAAT TGCCCGATCT chr3L:885997-886117 44 1.71e-04 TCAATAACAG CAACAAAT GAATTGTGGA chr3L:19084784-19084904 107 1.71e-04 CAGCTATGAT CAACAAAT GGAGAG chr3L:20445259-20445379 94 2.23e-04 ATTTTTGTGG AAAAAAAA TATCAACGAA chr2R:14974470-14974590 1 2.23e-04 . AAAAAAAA AAAATGCCTC chr3L:13236057-13236177 106 2.23e-04 TCACCTTGTG AAAAAAAA CAACAAA chr3L:8861151-8861271 85 2.49e-04 TTCTTGAGAC AAACAACA AAGAATGAAT chr3L:610913-611033 11 2.86e-04 ACCAATCGTC CAAAAAAA TGAGGGACGC chrX:11546237-11546357 110 2.86e-04 ATAAACAACC CAAAAAAA CGA chr2L:19788503-19788623 32 3.04e-04 GCGGCCATCA CAACAACA GCCGCAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11275363-11275483 3.7e-05 58_[+3]_54 chr3R:7438783-7438903 3.7e-05 111_[+3]_1 chr3L:3733152-3733272 3.7e-05 84_[+3]_28 chr2R:11443791-11443911 3.7e-05 71_[+3]_41 chr2R:18142512-18142632 3.7e-05 27_[+3]_85 chr3R:10778319-10778439 3.7e-05 30_[+3]_82 chrX:10534733-10534853 3.7e-05 100_[+3]_12 chr2L:10677828-10677948 3.7e-05 60_[+3]_52 chr3L:7786239-7786359 3.7e-05 26_[+3]_86 chrX:15807535-15807655 3.7e-05 40_[+3]_72 chr3L:562194-562314 3.7e-05 19_[+3]_93 chr2L:11188534-11188654 3.7e-05 51_[+3]_61 chr2R:14310353-14310473 3.7e-05 63_[+3]_49 chr3L:15996121-15996241 3.7e-05 74_[+3]_38 chr3R:21092144-21092264 6.3e-05 106_[+3]_6 chrX:16100865-16100985 6.3e-05 51_[+3]_61 chr3R:20622436-20622556 6.3e-05 39_[+3]_73 chr3R:8844116-8844236 6.3e-05 13_[+3]_99 chrX:16900452-16900572 6.3e-05 20_[+3]_92 chr2L:9703862-9703982 6.3e-05 60_[+3]_52 chr2L:1930849-1930969 8.9e-05 97_[+3]_15 chr2L:16760940-16761060 8.9e-05 62_[+3]_50 chr2R:11806009-11806129 8.9e-05 87_[+3]_25 chr3L:20662044-20662164 8.9e-05 95_[+3]_17 chr2R:23796054-23796174 8.9e-05 48_[+3]_64 chr2R:18880565-18880685 0.00013 14_[+3]_98 chrX:2305276-2305396 0.00013 46_[+3]_66 chrX:10015429-10015549 0.00013 15_[+3]_97 chr3L:8855015-8855135 0.00013 64_[+3]_48 chr3L:4388384-4388504 0.00013 2_[+3]_110 chrX:17828777-17828897 0.00014 17_[+3]_95 chr3L:16480167-16480287 0.00017 85_[+3]_27 chr3L:885997-886117 0.00017 43_[+3]_69 chr3L:19084784-19084904 0.00017 106_[+3]_6 chr3L:20445259-20445379 0.00022 93_[+3]_19 chr2R:14974470-14974590 0.00022 [+3]_112 chr3L:13236057-13236177 0.00022 105_[+3]_7 chr3L:8861151-8861271 0.00025 84_[+3]_28 chr3L:610913-611033 0.00029 10_[+3]_102 chrX:11546237-11546357 0.00029 109_[+3]_3 chr2L:19788503-19788623 0.0003 31_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAAAA width=8 seqs=41 chr2R:11275363-11275483 ( 59) AAACAAAA 1 chr3R:7438783-7438903 ( 112) AAACAAAA 1 chr3L:3733152-3733272 ( 85) AAACAAAA 1 chr2R:11443791-11443911 ( 72) AAACAAAA 1 chr2R:18142512-18142632 ( 28) AAACAAAA 1 chr3R:10778319-10778439 ( 31) AAACAAAA 1 chrX:10534733-10534853 ( 101) AAACAAAA 1 chr2L:10677828-10677948 ( 61) AAACAAAA 1 chr3L:7786239-7786359 ( 27) AAACAAAA 1 chrX:15807535-15807655 ( 41) AAACAAAA 1 chr3L:562194-562314 ( 20) AAACAAAA 1 chr2L:11188534-11188654 ( 52) AAACAAAA 1 chr2R:14310353-14310473 ( 64) AAACAAAA 1 chr3L:15996121-15996241 ( 75) AAACAAAA 1 chr3R:21092144-21092264 ( 107) CAACAAAA 1 chrX:16100865-16100985 ( 52) CAACAAAA 1 chr3R:20622436-20622556 ( 40) CAACAAAA 1 chr3R:8844116-8844236 ( 14) CAACAAAA 1 chrX:16900452-16900572 ( 21) CAACAAAA 1 chr2L:9703862-9703982 ( 61) CAACAAAA 1 chr2L:1930849-1930969 ( 98) AAACAAAC 1 chr2L:16760940-16761060 ( 63) AAACAAAC 1 chr2R:11806009-11806129 ( 88) AAACAAAC 1 chr3L:20662044-20662164 ( 96) AAACAAAC 1 chr2R:23796054-23796174 ( 49) AAACAAAC 1 chr2R:18880565-18880685 ( 15) AAACAAAT 1 chrX:2305276-2305396 ( 47) AAACAAAT 1 chrX:10015429-10015549 ( 16) AAACAAAT 1 chr3L:8855015-8855135 ( 65) AAACAAAT 1 chr3L:4388384-4388504 ( 3) AAACAAAT 1 chrX:17828777-17828897 ( 18) CAACAAAC 1 chr3L:16480167-16480287 ( 86) CAACAAAT 1 chr3L:885997-886117 ( 44) CAACAAAT 1 chr3L:19084784-19084904 ( 107) CAACAAAT 1 chr3L:20445259-20445379 ( 94) AAAAAAAA 1 chr2R:14974470-14974590 ( 1) AAAAAAAA 1 chr3L:13236057-13236177 ( 106) AAAAAAAA 1 chr3L:8861151-8861271 ( 85) AAACAACA 1 chr3L:610913-611033 ( 11) CAAAAAAA 1 chrX:11546237-11546357 ( 110) CAAAAAAA 1 chr2L:19788503-19788623 ( 32) CAACAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 2.8e+001 123 61 -1200 -1200 178 -1200 -1200 -1200 178 -1200 -1200 -1200 -125 208 -1200 -1200 178 -1200 -1200 -1200 178 -1200 -1200 -1200 171 -209 -1200 -1200 118 -51 -1200 -57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.8e+001 0.682927 0.317073 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.121951 0.878049 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.951220 0.048780 0.000000 0.000000 0.658537 0.146341 0.000000 0.195122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AC]AACAAAA -------------------------------------------------------------------------------- Time 19.93 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCCTCC MEME-4 width = 8 sites = 7 llr = 81 E-value = 3.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa6aa:aa probability G ::4::::: matrix T :::::a:: bits 2.3 ** ** ** 2.0 ** ** ** 1.8 ** ***** 1.6 ** ***** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCTCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11393107-11393227 45 4.90e-06 GCCCATGGCG CCCCCTCC CCGTCACATT chrX:18699902-18700022 33 4.90e-06 GGGCGCCCCC CCCCCTCC TCATAGGAGT chr3R:7661294-7661414 19 4.90e-06 CAGGCGGCCT CCCCCTCC CTACGCCACT chr3R:10537861-10537981 87 4.90e-06 CCCTCCACCA CCCCCTCC GCACTCAGGC chr2L:5218002-5218122 22 9.87e-06 GTCTGCGCAt ccgcctcc accttcacct chr2L:13887447-13887567 62 9.87e-06 TGTTATTTCG CCGCCTCC AGCAATAATG chr3L:22228297-22228417 8 9.87e-06 TACAACC CCGCCTCC CACGCACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11393107-11393227 4.9e-06 44_[+4]_68 chrX:18699902-18700022 4.9e-06 32_[+4]_80 chr3R:7661294-7661414 4.9e-06 18_[+4]_94 chr3R:10537861-10537981 4.9e-06 86_[+4]_26 chr2L:5218002-5218122 9.9e-06 21_[+4]_91 chr2L:13887447-13887567 9.9e-06 61_[+4]_51 chr3L:22228297-22228417 9.9e-06 7_[+4]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCTCC width=8 seqs=7 chrX:11393107-11393227 ( 45) CCCCCTCC 1 chrX:18699902-18700022 ( 33) CCCCCTCC 1 chr3R:7661294-7661414 ( 19) CCCCCTCC 1 chr3R:10537861-10537981 ( 87) CCCCCTCC 1 chr2L:5218002-5218122 ( 22) CCGCCTCC 1 chr2L:13887447-13887567 ( 62) CCGCCTCC 1 chr3L:22228297-22228417 ( 8) CCGCCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.7e+002 -945 226 -945 -945 -945 226 -945 -945 -945 146 102 -945 -945 226 -945 -945 -945 226 -945 -945 -945 -945 -945 178 -945 226 -945 -945 -945 226 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.7e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCTCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[CG]CCTCC -------------------------------------------------------------------------------- Time 25.61 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTGGSCR MEME-5 width = 8 sites = 35 llr = 300 E-value = 8.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::7 pos.-specific C :3:::5a: probability G 52:aa5:3 matrix T 55a::::: bits 2.3 ** * 2.0 ** * 1.8 *** * 1.6 *** * Relative 1.4 ***** Entropy 1.1 ***** (12.4 bits) 0.9 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGGCA consensus GC C G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21092144-21092264 28 2.02e-05 TTATCGCCGA GTTGGGCA CATGTTTCAC chr3R:15923331-15923451 78 2.02e-05 CTACTTGCTA GTTGGCCA TGTTGCCGAG chr3L:21381448-21381568 108 2.02e-05 CACTTTCTTT GTTGGGCA ACAAA chr2R:13247946-13248066 79 2.02e-05 GAACATCAGC GTTGGGCA GAGTTATTAT chr2R:7710940-7711060 11 4.80e-05 AGAACTACAT TTTGGCCA GTTTTCCGCA chr2R:22552295-22552415 26 4.80e-05 TTTATTGACT TTTGGGCA AAATGCCAGG chrX:2305276-2305396 38 4.80e-05 CGTAATTGCG TTTGGGCA TAAACAAATT chr3R:7499154-7499274 29 4.80e-05 ATGTGTTATT TTTGGCCA CGGCTGCGAT chr3L:16480167-16480287 13 4.80e-05 CTCTTTGGCT TTTGGCCA TGCCACGCGC chrX:2218593-2218713 98 4.80e-05 TCAAGGTGTT TTTGGCCA TGGCCATCTG chr2R:12291683-12291803 40 4.80e-05 CTTGTTTATT TTTGGCCA GAAAATTCCG chr3R:19466251-19466371 90 4.80e-05 CGCATTTGCA TTTGGCCA CATGTGTCGG chr2R:13550979-13551099 66 4.80e-05 CGGCATTGTT TTTGGCCA GCGGAAAAGG chr2R:7029800-7029920 61 4.80e-05 TCCTAGACGT TTTGGGCA TCTTTCTGGC chr3L:14432360-14432480 103 6.26e-05 CATAGGTTCA GTTGGCCG TTTTGTGACC chr2L:4906011-4906131 70 6.26e-05 CCAGGTTTTC GTTGGCCG CTTTTGTTTA chr3R:29985337-29985457 45 6.26e-05 GACCATTGTT GTTGGGCG CAAGTATGCG chrX:10939054-10939174 91 7.70e-05 GTGCCGATTT GCTGGGCA TGGGCAACCA chr3R:7438783-7438903 57 7.70e-05 ACACTGGACT GCTGGGCA ATTAATCTCG chr3R:30051941-30052061 20 7.70e-05 ACAAATTCGC GCTGGCCA CTTAGTCGGG chr3R:23790934-23791054 103 9.72e-05 CGCATCCAGT TTTGGGCG ACGTTAATTT chr3L:16004229-16004349 58 9.72e-05 ACAATTACGC TTTGGCCG TCCGTTCGCT chrX:3455147-3455267 91 1.17e-04 TAGACATTTT TCTGGCCA ACTAAGATTG chr3R:6230451-6230571 66 1.42e-04 TATTTGAAAT GCTGGCCG TATCGGTTAC chr2R:9751005-9751125 110 1.42e-04 ATTTCAGCGA GCTGGGCG AGC chr3L:20444203-20444323 14 1.42e-04 GGGGCATTTA GGTGGGCA TAAATTATAA chr3L:19196249-19196369 52 1.42e-04 TTGAGAAGGT GCTGGGCG AGCGGGGGTA chr2R:23796054-23796174 90 1.42e-04 AAGCTGAGTG GCTGGGCG ACTGAAACAA chr2L:13887447-13887567 21 1.77e-04 CCTCTGGATT TCTGGGCG ATGAAGTCAT chr3R:9914442-9914562 39 1.77e-04 TATGTATCTG TGTGGCCA CAAATGCAGC chr3R:26621523-26621643 82 1.77e-04 AACACATTGT TGTGGGCA AAAGACAGCT chr2R:7948825-7948945 55 1.77e-04 TTGCTTAGAC TGTGGCCA GAGTAAAGCG chr3R:6467779-6467899 5 1.77e-04 TATT TGTGGCCA CATACGCTGC chr2R:15811521-15811641 36 1.87e-04 TTAGTTCGTC GGTGGGCG GAAGGCCAGC chr3R:26918994-26919114 2 1.87e-04 C GGTGGGCG TGGCGCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21092144-21092264 2e-05 27_[+5]_85 chr3R:15923331-15923451 2e-05 77_[+5]_35 chr3L:21381448-21381568 2e-05 107_[+5]_5 chr2R:13247946-13248066 2e-05 78_[+5]_34 chr2R:7710940-7711060 4.8e-05 10_[+5]_102 chr2R:22552295-22552415 4.8e-05 25_[+5]_87 chrX:2305276-2305396 4.8e-05 37_[+5]_75 chr3R:7499154-7499274 4.8e-05 28_[+5]_84 chr3L:16480167-16480287 4.8e-05 12_[+5]_100 chrX:2218593-2218713 4.8e-05 97_[+5]_15 chr2R:12291683-12291803 4.8e-05 39_[+5]_73 chr3R:19466251-19466371 4.8e-05 89_[+5]_23 chr2R:13550979-13551099 4.8e-05 65_[+5]_47 chr2R:7029800-7029920 4.8e-05 60_[+5]_52 chr3L:14432360-14432480 6.3e-05 102_[+5]_10 chr2L:4906011-4906131 6.3e-05 69_[+5]_43 chr3R:29985337-29985457 6.3e-05 44_[+5]_68 chrX:10939054-10939174 7.7e-05 90_[+5]_22 chr3R:7438783-7438903 7.7e-05 56_[+5]_56 chr3R:30051941-30052061 7.7e-05 19_[+5]_93 chr3R:23790934-23791054 9.7e-05 102_[+5]_10 chr3L:16004229-16004349 9.7e-05 57_[+5]_55 chrX:3455147-3455267 0.00012 90_[+5]_22 chr3R:6230451-6230571 0.00014 65_[+5]_47 chr2R:9751005-9751125 0.00014 109_[+5]_3 chr3L:20444203-20444323 0.00014 13_[+5]_99 chr3L:19196249-19196369 0.00014 51_[+5]_61 chr2R:23796054-23796174 0.00014 89_[+5]_23 chr2L:13887447-13887567 0.00018 20_[+5]_92 chr3R:9914442-9914562 0.00018 38_[+5]_74 chr3R:26621523-26621643 0.00018 81_[+5]_31 chr2R:7948825-7948945 0.00018 54_[+5]_58 chr3R:6467779-6467899 0.00018 4_[+5]_108 chr2R:15811521-15811641 0.00019 35_[+5]_77 chr3R:26918994-26919114 0.00019 1_[+5]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTGGSCR width=8 seqs=35 chr3R:21092144-21092264 ( 28) GTTGGGCA 1 chr3R:15923331-15923451 ( 78) GTTGGCCA 1 chr3L:21381448-21381568 ( 108) GTTGGGCA 1 chr2R:13247946-13248066 ( 79) GTTGGGCA 1 chr2R:7710940-7711060 ( 11) TTTGGCCA 1 chr2R:22552295-22552415 ( 26) TTTGGGCA 1 chrX:2305276-2305396 ( 38) TTTGGGCA 1 chr3R:7499154-7499274 ( 29) TTTGGCCA 1 chr3L:16480167-16480287 ( 13) TTTGGCCA 1 chrX:2218593-2218713 ( 98) TTTGGCCA 1 chr2R:12291683-12291803 ( 40) TTTGGCCA 1 chr3R:19466251-19466371 ( 90) TTTGGCCA 1 chr2R:13550979-13551099 ( 66) TTTGGCCA 1 chr2R:7029800-7029920 ( 61) TTTGGGCA 1 chr3L:14432360-14432480 ( 103) GTTGGCCG 1 chr2L:4906011-4906131 ( 70) GTTGGCCG 1 chr3R:29985337-29985457 ( 45) GTTGGGCG 1 chrX:10939054-10939174 ( 91) GCTGGGCA 1 chr3R:7438783-7438903 ( 57) GCTGGGCA 1 chr3R:30051941-30052061 ( 20) GCTGGCCA 1 chr3R:23790934-23791054 ( 103) TTTGGGCG 1 chr3L:16004229-16004349 ( 58) TTTGGCCG 1 chrX:3455147-3455267 ( 91) TCTGGCCA 1 chr3R:6230451-6230571 ( 66) GCTGGCCG 1 chr2R:9751005-9751125 ( 110) GCTGGGCG 1 chr3L:20444203-20444323 ( 14) GGTGGGCA 1 chr3L:19196249-19196369 ( 52) GCTGGGCG 1 chr2R:23796054-23796174 ( 90) GCTGGGCG 1 chr2L:13887447-13887567 ( 21) TCTGGGCG 1 chr3R:9914442-9914562 ( 39) TGTGGCCA 1 chr3R:26621523-26621643 ( 82) TGTGGGCA 1 chr2R:7948825-7948945 ( 55) TGTGGCCA 1 chr3R:6467779-6467899 ( 5) TGTGGCCA 1 chr2R:15811521-15811641 ( 36) GGTGGGCG 1 chr3R:26918994-26919114 ( 2) GGTGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 8.2e+001 -1177 -1177 120 82 -1177 31 -8 90 -1177 -1177 -1177 178 -1177 -1177 225 -1177 -1177 -1177 225 -1177 -1177 122 129 -1177 -1177 227 -1177 -1177 118 -1177 70 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 8.2e+001 0.000000 0.000000 0.485714 0.514286 0.000000 0.257143 0.200000 0.542857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.485714 0.514286 0.000000 0.000000 1.000000 0.000000 0.000000 0.657143 0.000000 0.342857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGSCR MEME-5 regular expression -------------------------------------------------------------------------------- [TG][TCG]TGG[GC]C[AG] -------------------------------------------------------------------------------- Time 31.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9813241-9813361 3.41e-01 120 chr3R:13801323-13801443 2.40e-02 120 chrX:10935699-10935819 1.38e-01 120 chr3L:1378385-1378505 3.90e-02 60_[+1(3.37e-05)]_52 chrX:2163497-2163617 2.19e-04 58_[+4(3.55e-05)]_36_[+2(5.14e-05)]_\ 10 chr3L:1573305-1573425 4.77e-01 120 chr3L:15996121-15996241 7.46e-04 74_[+3(3.68e-05)]_38 chr3L:12203123-12203243 3.69e-02 26_[+1(5.27e-05)]_86 chr2L:10802090-10802210 2.05e-01 120 chr2R:14310353-14310473 1.79e-02 63_[+3(3.68e-05)]_49 chr2R:7029800-7029920 2.47e-02 60_[+5(4.80e-05)]_52 chr2L:16621584-16621704 5.38e-02 120 chr3L:12840021-12840141 5.27e-01 120 chr2L:6998875-6998995 3.51e-01 120 chr3R:9596754-9596874 2.24e-03 62_[+1(5.27e-05)]_28_[+2(5.14e-05)]_\ 14 chr3R:19080793-19080913 3.52e-02 29_[+2(5.14e-05)]_83 chr2L:11188534-11188654 8.67e-02 51_[+3(3.68e-05)]_61 chr3L:16698239-16698359 1.73e-01 120 chr3R:12702142-12702262 4.44e-01 120 chr3R:7783072-7783192 3.36e-02 111_[+2(5.14e-05)]_1 chr3R:24022034-24022154 1.73e-01 120 chr2L:2840495-2840615 2.50e-01 120 chr3L:19204541-19204661 4.31e-01 120 chr3L:13236057-13236177 2.76e-03 73_[+2(5.14e-05)]_39 chr3R:29985337-29985457 9.80e-02 44_[+5(6.26e-05)]_68 chr2R:9184235-9184355 2.25e-01 120 chr3R:7441490-7441610 7.48e-01 120 chr2L:16839804-16839924 1.14e-02 105_[+2(5.14e-05)]_7 chr2R:13550979-13551099 6.58e-02 65_[+5(4.80e-05)]_47 chr2L:9160229-9160349 6.78e-01 120 chr2L:428729-428849 3.71e-02 94_[+2(5.14e-05)]_18 chr2R:13247946-13248066 7.20e-03 78_[+5(2.02e-05)]_34 chr3L:562194-562314 6.86e-03 19_[+3(3.68e-05)]_93 chr3R:27740831-27740951 1.36e-01 120 chr3L:16004229-16004349 7.46e-02 57_[+5(9.72e-05)]_55 chr2L:14449402-14449522 6.37e-01 120 chr3R:4824816-4824936 8.36e-02 8_[+1(6.64e-05)]_104 chr3R:7066381-7066501 1.39e-01 120 chr3L:2121840-2121960 2.69e-02 120 chr3R:25236306-25236426 5.18e-03 65_[+2(5.14e-05)]_47 chr3L:21381448-21381568 6.83e-03 107_[+5(2.02e-05)]_5 chr2R:12016584-12016704 4.30e-01 120 chrX:5898782-5898902 2.15e-01 120 chr2L:1579921-1580041 8.52e-02 120 chr3L:16163269-16163389 5.82e-01 120 chrX:15807535-15807655 1.77e-04 13_[+2(5.14e-05)]_19_[+3(3.68e-05)]_\ 72 chr2L:9703862-9703982 3.60e-03 60_[+3(6.30e-05)]_52 chr3R:27247901-27248021 6.43e-02 71_[+1(2.38e-05)]_41 chr2R:14264293-14264413 1.43e-01 120 chr3L:7786239-7786359 4.15e-02 26_[+3(3.68e-05)]_86 chrX:16900452-16900572 1.70e-01 20_[+3(6.30e-05)]_92 chr2R:21923429-21923549 3.29e-03 86_[+2(8.87e-05)]_26 chr3R:31419644-31419764 7.01e-01 120 chr2R:21260164-21260284 1.94e-02 26_[+2(5.14e-05)]_86 chr3R:10560067-10560187 5.13e-03 120 chr3L:4388384-4388504 5.25e-02 120 chr3R:9499022-9499142 3.82e-01 120 chr3R:14464692-14464812 2.24e-01 120 chr2L:9678453-9678573 7.50e-03 78_[+3(3.68e-05)]_34 chr2L:4906011-4906131 1.16e-03 36_[+2(5.14e-05)]_1_[+2(5.14e-05)]_\ 16_[+5(6.26e-05)]_43 chr2L:7241071-7241191 6.89e-03 120 chr3R:8844116-8844236 3.87e-02 13_[+3(6.30e-05)]_99 chr3R:10776151-10776271 2.81e-04 39_[+1(1.38e-05)]_34_[+5(4.80e-05)]_\ 31 chr3L:1740708-1740828 9.25e-01 120 chr2R:18325920-18326040 1.79e-01 120 chrX:13821085-13821205 2.89e-01 120 chr3L:7530973-7531093 6.36e-02 120 chr3R:10537861-10537981 3.36e-03 86_[+4(4.90e-06)]_26 chr2R:23796054-23796174 2.00e-02 48_[+3(8.93e-05)]_64 chr2R:11938327-11938447 3.17e-02 120 chr3R:7661294-7661414 1.77e-04 18_[+4(4.90e-06)]_94 chr3R:24551139-24551259 5.82e-01 120 chr3R:14713337-14713457 1.38e-02 120 chr2L:17390924-17391044 7.26e-01 120 chr2R:20632913-20633033 4.00e-01 120 chr2L:10503760-10503880 1.21e-01 120 chr2L:5798785-5798905 8.25e-01 120 chr2L:7407806-7407926 1.05e-01 120 chr3L:19084784-19084904 4.84e-02 120 chr2R:9749921-9750041 7.05e-01 120 chr3L:3729765-3729885 2.68e-01 120 chr3R:14709940-14710060 1.92e-01 120 chr2R:14974470-14974590 9.11e-02 120 chrX:18835175-18835295 2.80e-02 120 chr3L:22228297-22228417 1.12e-04 7_[+4(9.87e-06)]_70_[+2(5.14e-05)]_\ 27 chr3R:6295990-6296110 3.73e-02 35_[+1(1.38e-05)]_12_[+1(3.37e-05)]_\ 57 chr3R:9137084-9137204 4.81e-02 120 chr2L:2731922-2732042 4.65e-01 120 chr3R:14759072-14759192 1.34e-01 120 chr2R:11192104-11192224 1.65e-01 120 chrX:19188647-19188767 3.28e-01 120 chr2L:14216754-14216874 9.74e-01 120 chr3R:15128519-15128639 2.31e-02 63_[+2(5.14e-05)]_49 chrX:12894073-12894193 2.27e-01 120 chr3L:15998394-15998514 1.85e-02 120 chr3R:19466251-19466371 1.70e-02 89_[+5(4.80e-05)]_23 chr3R:6467779-6467899 1.15e-02 120 chr2R:12291683-12291803 3.19e-02 39_[+5(4.80e-05)]_73 chr2L:8170929-8171049 4.01e-01 120 chr3R:9130038-9130158 3.49e-03 104_[+2(5.14e-05)]_8 chr3L:11145229-11145349 1.85e-01 120 chrX:16726950-16727070 1.53e-01 120 chr2R:19197385-19197505 1.96e-01 120 chr3L:19196249-19196369 2.54e-03 120 chr2L:9679977-9680097 2.68e-01 120 chr3R:26918994-26919114 1.64e-01 120 chr2R:18571047-18571167 6.55e-02 120 chr2R:19297014-19297134 6.63e-03 9_[+2(5.14e-05)]_103 chr3L:6254886-6255006 6.83e-01 120 chrX:2218593-2218713 7.03e-02 97_[+5(4.80e-05)]_15 chr2R:6222068-6222188 1.84e-01 120 chr2L:10677828-10677948 3.09e-03 60_[+3(3.68e-05)]_52 chr3R:9140746-9140866 2.32e-02 40_[+1(5.27e-05)]_72 chr2L:8715646-8715766 9.28e-02 120 chr3R:15616114-15616234 1.89e-01 120 chr3L:20445259-20445379 1.41e-01 120 chrX:18699902-18700022 5.25e-02 32_[+4(4.90e-06)]_80 chr3L:20662044-20662164 7.68e-02 95_[+3(8.93e-05)]_17 chr3L:8746983-8747103 6.37e-02 120 chr3R:9484708-9484828 6.95e-01 120 chrX:19504505-19504625 3.24e-02 120 chr2R:21094096-21094216 3.79e-01 120 chrX:10534733-10534853 7.04e-03 29_[+1(2.38e-05)]_29_[+3(6.30e-05)]_\ 26_[+3(3.68e-05)]_12 chr2R:21639372-21639492 5.14e-02 5_[+2(5.14e-05)]_107 chrX:11546237-11546357 2.88e-02 120 chr3R:14096055-14096175 5.46e-01 120 chr3R:16552915-16553035 4.64e-01 120 chrX:3455147-3455267 1.87e-02 120 chr2L:21832334-21832454 1.14e-01 120 chrX:6721002-6721122 8.67e-01 120 chr3L:2527239-2527359 2.80e-01 120 chr2R:14922030-14922150 1.84e-01 120 chr2R:19544734-19544854 9.69e-02 120 chr2R:12895429-12895549 2.81e-01 120 chr2L:19788503-19788623 2.75e-03 120 chr3R:20622436-20622556 4.29e-02 39_[+3(6.30e-05)]_73 chr3R:13333167-13333287 3.01e-01 120 chr3L:885997-886117 1.08e-02 78_[+1(2.38e-05)]_34 chr2R:7948825-7948945 2.70e-02 120 chr3R:21586570-21586690 2.76e-02 61_[+1(3.37e-05)]_51 chr3L:16480167-16480287 1.93e-02 12_[+5(4.80e-05)]_100 chr2L:3637836-3637956 1.87e-01 120 chr3L:21290490-21290610 8.36e-01 120 chrX:11601873-11601993 3.51e-02 58_[+1(3.37e-05)]_54 chr3R:10778319-10778439 9.96e-02 30_[+3(3.68e-05)]_82 chr2L:7486369-7486489 1.58e-01 120 chr3R:26621523-26621643 1.35e-02 120 chr3L:16028084-16028204 5.02e-01 120 chr3L:513833-513953 6.74e-02 120 chr2R:20773454-20773574 1.76e-01 120 chrX:19602659-19602779 1.55e-01 120 chr3R:7499154-7499274 9.12e-03 28_[+5(4.80e-05)]_84 chr3R:27570603-27570723 3.35e-01 120 chr3R:14710783-14710903 9.97e-03 64_[+3(6.30e-05)]_48 chr3R:30544419-30544539 4.22e-02 120 chr3R:15180341-15180461 2.42e-01 120 chr2R:13246452-13246572 2.15e-01 120 chr3L:17505829-17505949 6.58e-02 120 chr2R:18142512-18142632 1.29e-01 27_[+3(3.68e-05)]_85 chr2R:11443791-11443911 1.56e-02 71_[+3(3.68e-05)]_41 chrX:1282583-1282703 1.79e-01 120 chr3L:3004325-3004445 2.71e-01 79_[+1(6.64e-05)]_33 chr3R:27660461-27660581 1.08e-01 100_[+2(8.87e-05)]_12 chr3L:610913-611033 8.45e-04 81_[+1(3.37e-05)]_31 chr2R:15811521-15811641 9.47e-03 120 chr3R:24526204-24526324 2.17e-01 120 chr3L:3733152-3733272 9.24e-03 84_[+3(3.68e-05)]_28 chr3R:14708383-14708503 4.04e-01 120 chr2R:22901850-22901970 1.08e-01 63_[+2(8.87e-05)]_49 chr2R:12265537-12265657 1.14e-01 20_[+2(5.14e-05)]_92 chrX:16910022-16910142 1.35e-01 120 chr3L:8630068-8630188 4.46e-01 120 chr3L:642171-642291 7.34e-01 120 chr3R:9914442-9914562 3.42e-02 120 chr3L:20444203-20444323 1.54e-02 31_[+2(5.14e-05)]_81 chrX:11393107-11393227 1.39e-02 44_[+4(4.90e-06)]_68 chr2L:13887447-13887567 4.43e-03 61_[+4(9.87e-06)]_51 chrX:2168593-2168713 5.16e-02 120 chr3R:30051941-30052061 5.43e-04 19_[+5(7.70e-05)]_30_[+1(6.64e-05)]_\ 55 chr3R:24889470-24889590 5.78e-02 120 chr2R:9751005-9751125 1.84e-04 62_[+2(5.14e-05)]_50 chr2L:14169594-14169714 6.19e-01 120 chr3L:8861151-8861271 7.45e-02 120 chr2R:18127519-18127639 6.85e-03 21_[+2(5.14e-05)]_91 chr3L:884736-884856 2.98e-01 120 chr2L:19506442-19506562 1.67e-02 45_[+1(1.38e-05)]_67 chr2R:9072258-9072378 5.28e-03 36_[+1(1.38e-05)]_76 chr3L:11718049-11718169 8.75e-02 38_[+1(1.38e-05)]_74 chr2R:7712473-7712593 1.62e-01 64_[+1(6.64e-05)]_48 chr3R:9131554-9131674 2.74e-01 120 chr3R:6230451-6230571 1.98e-02 120 chr2L:17741723-17741843 2.29e-03 56_[+2(8.87e-05)]_6_[+1(1.38e-05)]_\ 42 chrX:14861025-14861145 1.47e-02 81_[+2(8.87e-05)]_31 chr2L:8983742-8983862 2.81e-01 120 chr3L:4899229-4899349 4.78e-01 120 chr3L:12304185-12304305 6.59e-02 120 chr2R:11806009-11806129 6.51e-02 87_[+3(8.93e-05)]_25 chr2L:8099249-8099369 9.31e-02 120 chr3L:8855015-8855135 3.07e-03 39_[+2(5.14e-05)]_21_[+2(5.14e-05)]_\ 44 chr2L:15000504-15000624 1.86e-02 47_[+1(5.27e-05)]_65 chrX:10015429-10015549 4.60e-04 32_[+2(5.14e-05)]_80 chr3L:18888724-18888844 1.29e-02 65_[+1(1.38e-05)]_47 chr3R:31247366-31247486 7.10e-03 120 chr3R:31127121-31127241 5.46e-02 5_[+1(2.38e-05)]_107 chrX:8450348-8450468 1.65e-01 120 chr3R:15923331-15923451 6.37e-02 77_[+5(2.02e-05)]_35 chrX:16100865-16100985 1.82e-02 51_[+3(6.30e-05)]_61 chrX:2305276-2305396 2.89e-03 37_[+5(4.80e-05)]_75 chr2L:21073426-21073546 1.09e-01 120 chr3L:14223547-14223667 3.73e-01 120 chr2R:18880565-18880685 2.57e-02 120 chrX:17828777-17828897 5.98e-03 36_[+1(1.38e-05)]_76 chr3R:7438783-7438903 2.95e-03 56_[+5(7.70e-05)]_47_[+3(3.68e-05)]_\ 1 chr2R:12083268-12083388 1.17e-01 120 chr3R:21836766-21836886 6.34e-01 120 chr3R:23662951-23663071 1.27e-01 18_[+2(5.14e-05)]_94 chr2L:16321281-16321401 6.84e-02 19_[+2(8.87e-05)]_93 chr3R:19001825-19001945 4.44e-01 120 chr2R:16601833-16601953 2.71e-01 120 chr2L:5218002-5218122 1.24e-02 21_[+4(9.87e-06)]_28_[+4(2.36e-05)]_\ 55 chr3R:21602633-21602753 9.32e-02 120 chr2R:11187228-11187348 6.08e-02 120 chr3R:15459318-15459438 3.19e-01 120 chr2R:22552295-22552415 3.31e-02 25_[+5(4.80e-05)]_87 chr2R:11275363-11275483 8.71e-02 58_[+3(3.68e-05)]_54 chr2L:16760940-16761060 1.36e-02 62_[+3(8.93e-05)]_50 chr2R:11667753-11667873 1.53e-02 120 chr3L:465616-465736 3.57e-01 120 chr3L:10802946-10803066 1.58e-03 79_[+3(8.93e-05)]_33 chr2L:10689254-10689374 4.90e-01 120 chr3L:16059043-16059163 2.85e-01 120 chr2L:1930849-1930969 1.43e-01 97_[+3(8.93e-05)]_15 chr2R:15986867-15986987 5.16e-02 120 chrX:10939054-10939174 8.39e-02 90_[+5(7.70e-05)]_22 chr3L:14432360-14432480 1.42e-01 102_[+5(6.26e-05)]_10 chr3R:23790934-23791054 2.31e-03 49_[+1(6.64e-05)]_45_[+5(9.72e-05)]_\ 10 chr2R:7710940-7711060 6.11e-03 10_[+5(4.80e-05)]_102 chr2L:2727492-2727612 6.05e-02 77_[+1(3.37e-05)]_35 chr3R:21092144-21092264 1.32e-03 27_[+5(2.02e-05)]_71_[+3(6.30e-05)]_\ 6 chr3L:8545596-8545716 7.50e-01 120 chr2L:1095703-1095823 6.89e-02 120 chr2L:17425131-17425251 3.96e-02 120 chr2L:2839597-2839717 2.73e-01 120 chr3L:535489-535609 6.52e-02 120 chr3R:28842610-28842730 2.37e-01 120 chr2R:10676042-10676162 2.60e-01 120 chr3R:14763753-14763873 2.54e-02 120 chr2L:4091885-4092005 6.27e-02 120 chrX:3285344-3285464 1.56e-02 11_[+1(5.27e-05)]_60_[+1(3.37e-05)]_\ 33 chr3R:15373088-15373208 1.32e-01 74_[+1(3.37e-05)]_38 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************