******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/schlank.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:17388213-17388333 1.0000 120 chr3R:25236913-25237033 1.0000 120 chr2R:21640403-21640523 1.0000 120 chr2R:10151187-10151307 1.0000 120 chrX:12667139-12667259 1.0000 120 chr3R:16168207-16168327 1.0000 120 chrX:18511052-18511172 1.0000 120 chrX:13322586-13322706 1.0000 120 chrX:6264564-6264684 1.0000 120 chr2R:18334381-18334501 1.0000 120 chrX:14117951-14118071 1.0000 120 chr3L:11442047-11442167 1.0000 120 chr2R:7242288-7242408 1.0000 120 chr2R:11206135-11206255 1.0000 120 chr2L:19412102-19412222 1.0000 120 chr2L:16451938-16452058 1.0000 120 chr3R:18296251-18296371 1.0000 120 chrX:2663589-2663709 1.0000 120 chr3R:22518461-22518581 1.0000 120 chrX:13633421-13633541 1.0000 120 chr3L:16310118-16310238 1.0000 120 chr3R:20955255-20955375 1.0000 120 chr3L:8695244-8695364 1.0000 120 chrX:16890753-16890873 1.0000 120 chr3R:31758925-31759045 1.0000 120 chr3L:16356554-16356674 1.0000 120 chr3R:30537098-30537218 1.0000 120 chr3L:17625162-17625282 1.0000 120 chr2R:19269765-19269885 1.0000 120 chr2R:19294795-19294915 1.0000 120 chr3L:11285762-11285882 1.0000 120 chr2R:7689935-7690055 1.0000 120 chr3R:25448927-25449047 1.0000 120 chr2R:19125689-19125809 1.0000 120 chr2L:8955879-8955999 1.0000 120 chr3R:19613066-19613186 1.0000 120 chr3R:19907814-19907934 1.0000 120 chr3R:17759880-17760000 1.0000 120 chr3L:17916273-17916393 1.0000 120 chr2R:6692492-6692612 1.0000 120 chr3R:17966145-17966265 1.0000 120 chr3R:28588504-28588624 1.0000 120 chr3R:11812904-11813024 1.0000 120 chr2R:23747317-23747437 1.0000 120 chr3R:17945905-17946025 1.0000 120 chr3R:10166532-10166652 1.0000 120 chr2L:18864226-18864346 1.0000 120 chr3L:13986473-13986593 1.0000 120 chr3R:8117494-8117614 1.0000 120 chr3L:11281023-11281143 1.0000 120 chrX:17465655-17465775 1.0000 120 chr2R:20270935-20271055 1.0000 120 chr3L:11286623-11286743 1.0000 120 chr2L:11902637-11902757 1.0000 120 chr3R:14472692-14472812 1.0000 120 chr3L:19845633-19845753 1.0000 120 chr2L:1637981-1638101 1.0000 120 chr2R:9190157-9190277 1.0000 120 chr2R:22390345-22390465 1.0000 120 chr2L:12022847-12022967 1.0000 120 chrX:15602549-15602669 1.0000 120 chr3R:20545801-20545921 1.0000 120 chr2R:11192631-11192751 1.0000 120 chr2L:1735258-1735378 1.0000 120 chr3L:15689672-15689792 1.0000 120 chr2R:12947104-12947224 1.0000 120 chr3R:16234278-16234398 1.0000 120 chrX:4038861-4038981 1.0000 120 chr3L:19961918-19962038 1.0000 120 chr3L:20124306-20124426 1.0000 120 chr2L:18506967-18507087 1.0000 120 chr3L:3931997-3932117 1.0000 120 chr3R:23013612-23013732 1.0000 120 chr2L:12493269-12493389 1.0000 120 chr2L:8171614-8171734 1.0000 120 chrX:7708113-7708233 1.0000 120 chr3R:25870555-25870675 1.0000 120 chrX:16917581-16917701 1.0000 120 chr3L:11347629-11347749 1.0000 120 chr2R:22193030-22193150 1.0000 120 chr3L:12796371-12796491 1.0000 120 chrX:3282083-3282203 1.0000 120 chr3L:11443312-11443432 1.0000 120 chr3L:11788261-11788381 1.0000 120 chr2R:6686937-6687057 1.0000 120 chr2R:16669889-16670009 1.0000 120 chr3R:31603871-31603991 1.0000 120 chr3L:3932850-3932970 1.0000 120 chr3R:16981092-16981212 1.0000 120 chr3R:16209523-16209643 1.0000 120 chr2R:8120564-8120684 1.0000 120 chr3R:4359743-4359863 1.0000 120 chr3L:19847104-19847224 1.0000 120 chr3R:20263084-20263204 1.0000 120 chrX:6253013-6253133 1.0000 120 chr3R:8356624-8356744 1.0000 120 chr2L:20840583-20840703 1.0000 120 chr2L:307312-307432 1.0000 120 chr3L:16670350-16670470 1.0000 120 chr3R:10186213-10186333 1.0000 120 chr2R:10018950-10019070 1.0000 120 chr3L:17948254-17948374 1.0000 120 chr2R:10400134-10400254 1.0000 120 chr2L:413069-413189 1.0000 120 chr3L:783027-783147 1.0000 120 chr3L:9020600-9020720 1.0000 120 chr3R:14479755-14479875 1.0000 120 chr2L:4829165-4829285 1.0000 120 chr2R:21076902-21077022 1.0000 120 chr3L:3925556-3925676 1.0000 120 chrX:19306712-19306832 1.0000 120 chr4:167690-167810 1.0000 120 chrX:15120321-15120441 1.0000 120 chr3R:11968355-11968475 1.0000 120 chr2R:16845506-16845626 1.0000 120 chr3R:5302180-5302300 1.0000 120 chr2R:22062406-22062526 1.0000 120 chr3R:19151987-19152107 1.0000 120 chr3R:30198973-30199093 1.0000 120 chr3R:9529476-9529596 1.0000 120 chr3R:8524406-8524526 1.0000 120 chr2L:9389605-9389725 1.0000 120 chr3L:15150195-15150315 1.0000 120 chr3L:13912939-13913059 1.0000 120 chrX:18407441-18407561 1.0000 120 chrX:12749989-12750109 1.0000 120 chr3R:21584721-21584841 1.0000 120 chr3L:8074165-8074285 1.0000 120 chr3R:8155911-8156031 1.0000 120 chr3L:3382046-3382166 1.0000 120 chr3L:18144748-18144868 1.0000 120 chr3L:2254450-2254570 1.0000 120 chrX:966948-967068 1.0000 120 chr3L:11278545-11278665 1.0000 120 chr2R:24963315-24963435 1.0000 120 chr3R:23284391-23284511 1.0000 120 chr3R:7217312-7217432 1.0000 120 chr3L:8675137-8675257 1.0000 120 chr3R:20273694-20273814 1.0000 120 chr3R:4453923-4454043 1.0000 120 chr3L:548985-549105 1.0000 120 chr2L:8697902-8698022 1.0000 120 chr3L:4025869-4025989 1.0000 120 chr2L:1125545-1125665 1.0000 120 chr2L:7047926-7048046 1.0000 120 chr3L:17006228-17006348 1.0000 120 chr3L:9696036-9696156 1.0000 120 chr3L:11351442-11351562 1.0000 120 chr3L:2469779-2469899 1.0000 120 chr2R:24746040-24746160 1.0000 120 chr2L:11845298-11845418 1.0000 120 chr2L:856165-856285 1.0000 120 chr2R:18774919-18775039 1.0000 120 chrX:5664333-5664453 1.0000 120 chr2R:13723356-13723476 1.0000 120 chr3L:15548940-15549060 1.0000 120 chr3R:29757370-29757490 1.0000 120 chr3L:11358799-11358919 1.0000 120 chr2R:17085655-17085775 1.0000 120 chr3L:6612777-6612897 1.0000 120 chr3R:10099418-10099538 1.0000 120 chr2R:9550229-9550349 1.0000 120 chrX:515842-515962 1.0000 120 chr2R:24629562-24629682 1.0000 120 chr2L:18151893-18152013 1.0000 120 chr3L:19071630-19071750 1.0000 120 chr3R:30802306-30802426 1.0000 120 chr2R:10304286-10304406 1.0000 120 chr2R:13336716-13336836 1.0000 120 chr3R:12716400-12716520 1.0000 120 chr2L:14399479-14399599 1.0000 120 chrX:8112861-8112981 1.0000 120 chr3L:17791634-17791754 1.0000 120 chr2R:21082660-21082780 1.0000 120 chr3L:11107581-11107701 1.0000 120 chr2L:9943663-9943783 1.0000 120 chr2R:16225494-16225614 1.0000 120 chr2R:22387332-22387452 1.0000 120 chr3R:29891322-29891442 1.0000 120 chr2L:18549636-18549756 1.0000 120 chr2R:24292868-24292988 1.0000 120 chr3L:9614616-9614736 1.0000 120 chr2R:22205656-22205776 1.0000 120 chr3L:17001203-17001323 1.0000 120 chr3L:16667645-16667765 1.0000 120 chr3L:16160058-16160178 1.0000 120 chr2L:17450231-17450351 1.0000 120 chrX:948247-948367 1.0000 120 chrX:13626039-13626159 1.0000 120 chrX:3869253-3869373 1.0000 120 chr2R:15480307-15480427 1.0000 120 chr3R:27986934-27987054 1.0000 120 chrX:6592199-6592319 1.0000 120 chr3L:17007379-17007499 1.0000 120 chr2L:8084517-8084637 1.0000 120 chr3L:10679835-10679955 1.0000 120 chr3R:19621079-19621199 1.0000 120 chr2R:9546513-9546633 1.0000 120 chr2L:12506971-12507091 1.0000 120 chr3R:28587177-28587297 1.0000 120 chr2R:10013327-10013447 1.0000 120 chr2L:2168316-2168436 1.0000 120 chr2L:6085954-6086074 1.0000 120 chr2R:15931215-15931335 1.0000 120 chr2L:20390103-20390223 1.0000 120 chr3L:11258492-11258612 1.0000 120 chrX:12889270-12889390 1.0000 120 chr3L:3760497-3760617 1.0000 120 chr2L:12046739-12046859 1.0000 120 chr3L:156707-156827 1.0000 120 chr3R:16655311-16655431 1.0000 120 chr2L:1043712-1043832 1.0000 120 chr3R:13441899-13442019 1.0000 120 chrX:16598525-16598645 1.0000 120 chr3R:4911191-4911311 1.0000 120 chr2R:17477288-17477408 1.0000 120 chr3R:5746795-5746915 1.0000 120 chrX:14727725-14727845 1.0000 120 chr2R:22669213-22669333 1.0000 120 chr2R:15846375-15846495 1.0000 120 chr2L:9509810-9509930 1.0000 120 chr3L:12350459-12350579 1.0000 120 chr3R:9430536-9430656 1.0000 120 chr2L:7973562-7973682 1.0000 120 chr2R:17272597-17272717 1.0000 120 chr2R:22789417-22789537 1.0000 120 chr2L:13882046-13882166 1.0000 120 chr2R:21549134-21549254 1.0000 120 chr2L:20935509-20935629 1.0000 120 chr3L:21055954-21056074 1.0000 120 chr2R:18605452-18605572 1.0000 120 chr3R:21198136-21198256 1.0000 120 chrX:20434703-20434823 1.0000 120 chr3L:4221390-4221510 1.0000 120 chr3R:13802331-13802451 1.0000 120 chr3L:20730992-20731112 1.0000 120 chr3L:20406423-20406543 1.0000 120 chr3L:3078932-3079052 1.0000 120 chr2L:1837892-1838012 1.0000 120 chr2R:18435417-18435537 1.0000 120 chr2L:2165729-2165849 1.0000 120 chr2L:5096968-5097088 1.0000 120 chr3L:7866818-7866938 1.0000 120 chr3L:8347481-8347601 1.0000 120 chr2L:6080508-6080628 1.0000 120 chr3R:17526196-17526316 1.0000 120 chr3L:1151788-1151908 1.0000 120 chr3R:22631250-22631370 1.0000 120 chrX:18082847-18082967 1.0000 120 chr3L:2573105-2573225 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_schlank/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/schlank.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.209 G 0.204 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.209 G 0.204 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DGYAAAYA MEME-1 width = 8 sites = 126 llr = 877 E-value = 6.2e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 43:a9a:a pos.-specific C ::6:1:5: probability G 27:::::: matrix T 3:4:::5: bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 *** * Entropy 1.1 ***** * (10.0 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGCAAATA consensus TAT C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21198136-21198256 66 1.92e-05 ATAGGCCCAA AGCAAACA AACACGGCGC chr2L:18151893-18152013 36 1.92e-05 AATATTATAT AGCAAACA GGGCAACTAT chrX:515842-515962 84 1.92e-05 TTGTGTacaa agcaaaca aagaaatcaa chr2R:24746040-24746160 89 1.92e-05 TAAacaaaca agcaaaca cacacacaca chr3R:30198973-30199093 4 1.92e-05 CAA AGCAAACA ACCAAAGGCT chr3R:31603871-31603991 17 1.92e-05 TGAACACTTG AGCAAACA TCACCATATT chr3L:12796371-12796491 61 1.92e-05 TGGTATACGA AGCAAACA AGTCAAATGA chr3L:15689672-15689792 83 1.92e-05 GGACACGCAA AGCAAACA AAGTCCAAGT chr2R:15480307-15480427 12 3.86e-05 GAAACCAGTT TGCAAACA TGTACATGGC chr3L:15548940-15549060 46 3.86e-05 GAATATGAAA TGCAAACA CAAGTGCAAC chr3R:23284391-23284511 30 3.86e-05 ACTTTGGATA TGCAAACA AACTACTGAT chr2R:21076902-21077022 41 3.86e-05 GAGTGATAAA TGCAAACA ACGCATATTG chr2L:4829165-4829285 78 3.86e-05 AATTTACGTG TGCAAACA CAACAGCTCA chr2L:13882046-13882166 104 7.90e-05 CTGTGCGAAT AGCAAATA CGAATATAG chr3R:19621079-19621199 95 7.90e-05 TATTAAAAAC GGCAAACA GCTGTTCTGT chr3R:29757370-29757490 82 7.90e-05 AAGCCTCCAA GGCAAACA CAAAGAGCGA chr2L:11845298-11845418 86 7.90e-05 ACAGAGTCAA AGCAAATA AAATGATAAT chr3L:17006228-17006348 90 7.90e-05 CTAAGGCAAT GGCAAACA GTAGTTAAAG chr3L:8074165-8074285 22 7.90e-05 CCCAAAAAGC GGCAAACA CTGGCGGGAA chr2R:8120564-8120684 18 7.90e-05 GTCGCTGAGT GGCAAACA TCTGGGGACA chr2R:6686937-6687057 40 7.90e-05 ACTAATCGCA AGCAAATA CACGAGGGCA chr3R:23013612-23013732 18 7.90e-05 AAATATTCAA AGCAAAta tcagttatca chrX:13633421-13633541 42 7.90e-05 ACATACCGGT AGCAAATA GAACACCCAA chr3R:18296251-18296371 89 7.90e-05 GATACACGCT AGCAAATA TTTGATCGGC chr3L:11442047-11442167 23 7.90e-05 TACGCAGGCA GGCAAACA GCGGATTCGG chr2R:18334381-18334501 57 7.90e-05 TTCACACCTA AGCAAATA ACTTAAACAT chr3R:25236913-25237033 37 7.90e-05 CTGATCTCAA AGCAAATA TGGGATGAAT chr2R:21549134-21549254 64 1.06e-04 CCAGCAACTG TGCAAATA TTGATAGGAA chr3L:156707-156827 59 1.06e-04 CCCAGATATT TGCAAATA AAATGTCAAC chr3R:28587177-28587297 42 1.06e-04 GTAGACTCTC TGCAAATA GTAATGCCAG chr3L:9696036-9696156 52 1.06e-04 ATTGTTGCTC TGCAAATA TCTCTGCTAT chr2R:22390345-22390465 17 1.06e-04 TGGGGCACTA TGCAAATA GAGACAGTCA chr2L:1637981-1638101 55 1.06e-04 TAGTTTGCAG TGCAAATA CAAATCAGTT chr3L:11286623-11286743 48 1.06e-04 CTGATTCGAG TGCAAATA TTTACCATCT chr3R:25448927-25449047 69 1.06e-04 CTAATTTAAT TGCAAATA ATCGAAAGTC chr3L:15150195-15150315 59 1.25e-04 ATTTGTTCTG GGCAAATA TGAATGATGC chrX:16917581-16917701 45 1.25e-04 CAAATGGCCT GGCAAATA TTGACTCCCG chr2R:11192631-11192751 84 1.25e-04 GTTGAGGTTG GGCAAATA AACTAAAATA chr3R:20545801-20545921 79 1.25e-04 GTTGGTTGCA GGCAAATA TGTTAGTCGG chr2L:18864226-18864346 92 1.25e-04 TTGTTTGATG GGCAAATA AGCTGTGGGG chr2L:9509810-9509930 28 1.52e-04 GCCGAAAGCA AGTAAACA GGGAATGTGA chrX:12889270-12889390 63 1.52e-04 GAAGGGGAGA AGTAAACA AAGGCGACGA chr2L:12506971-12507091 50 1.52e-04 AGAAGCCAAA AGTAAACA AAACTGGTTG chr2R:19125689-19125809 27 1.52e-04 ACTTTTGTAC AGTAAACA TCGCTGCGAT chr3R:22631250-22631370 110 1.79e-04 GAAATTCTCG TGTAAACA GTT chr3R:27986934-27987054 73 1.79e-04 TTTAAAGTTG TGTAAACA AGCCCACTGA chr2L:1125545-1125665 26 1.79e-04 ATTTGCCCAG TGTAAACA TACACACAAC chr2L:1735258-1735378 72 1.79e-04 CGCTCGGGCT TGTAAACA TGAACATGAA chr3R:17966145-17966265 42 1.79e-04 TTGCCTCTCA TGTAAACA TTTGCATTAT chrX:13322586-13322706 52 1.79e-04 TTCACGTTTA TGTAAACA TTTACACACT chr2R:18605452-18605572 109 2.36e-04 TTTGGCCAAA GGTAAACA ATTT chr2R:22669213-22669333 73 2.36e-04 GATAAAGCTC GGTAAACA GTATTCGAGA chr3R:4911191-4911311 77 2.36e-04 CCTTGCGCTC GGTAAACA GGTGCCGCGC chr2L:18549636-18549756 21 2.36e-04 TTAGCAACTT GGTAAACA TCAAGGGGGG chr2R:21082660-21082780 108 2.36e-04 GGAACAAGAA AGTAAATA TCTAC chr2R:10304286-10304406 82 2.36e-04 TTGTTTGTAG GGTAAACA ACGCGTACAC chr3R:30802306-30802426 53 2.36e-04 ATCCCGGGTG GGTAAACA TCTCGGCCCC chr3R:8155911-8156031 72 2.36e-04 ATATATACCG AGTAAATA GATTCTCCCC chrX:12749989-12750109 48 2.36e-04 TTCTGCCCTA AGTAAATA GGGCCATAGA chr3R:19151987-19152107 71 2.36e-04 AATTGGAATA AGTAAATA GCAGCCTGTT chr3R:19613066-19613186 87 2.36e-04 TTGTATGCTA GGTAAACA AATAACTTCT chrX:3869253-3869373 93 2.74e-04 TCTATCCAGC TGTAAATA TTTATGGTCC chr2R:11206135-11206255 62 2.74e-04 TGAACACAAA TGTAAATA TTATTTCGAA chr3L:7866818-7866938 69 3.01e-04 TCCGCCGCTA GGTAAATA AAAAATCACC chr2L:20935509-20935629 44 3.01e-04 GGAGTAATAA GGTAAATA TATGCTCAGC chr2L:17450231-17450351 42 3.01e-04 CAGCGAAAAA GGTAAATA AGGCACAATT chr3L:9020600-9020720 35 3.01e-04 GCTCTCGATG GGTAAATA TGTAGTTAGC chr3R:20263084-20263204 23 3.01e-04 TAAATTGTAA GGTAAATA ATCCACATGA chr3R:31758925-31759045 39 3.01e-04 TTTTGACAGG GGTAAATA ATCGGGCTGG chr3L:20730992-20731112 101 3.29e-04 TGGCTATACA AACAAACA CCGACACGCA chrX:12667139-12667259 49 3.29e-04 TGTTGACAAT AACAAACA AGTTTATTTA chr2L:20390103-20390223 110 3.56e-04 CTTCTGGGTA Tacaaaca gac chr3R:8356624-8356744 42 3.56e-04 CGGTCTTGTT TACAAACA AATAGTACGT chr2R:17272597-17272717 110 4.14e-04 TGCGAATGTG AACAAATA TTT chr3R:5746795-5746915 40 4.14e-04 ACTACTATTA AACAAATA AAGATGGCAA chr2L:2168316-2168436 99 4.14e-04 GTAAGTTCAT AACAAATA TGCCCCCTCC chr3L:17791634-17791754 37 4.14e-04 TGTTAAATTA AACAAATA GTATTCAGAC chr3R:20273694-20273814 105 4.14e-04 TAAATTATAC AACAAATA TTCCAACA chr2L:9389605-9389725 77 4.14e-04 AGGCAATAAT AACAAATA ACAGCAGTCA chr3L:3932850-3932970 60 4.14e-04 TTTGACAACT AACAAATA CGATCTGCCA chr3L:16356554-16356674 88 4.14e-04 AAATACACAA AACAAATA GTCAACAGGT chr3R:17526196-17526316 99 4.53e-04 ACTTAACACA TACAAATA GAAATATTAT chr2L:12493269-12493389 48 4.53e-04 ATCCGTAaga tacaaata gcgacagata chr3L:20124306-20124426 73 4.53e-04 TAATTAGGAC TACAAATA CACTGGCAAG chr2R:20270935-20271055 77 4.53e-04 TGCTAATGAA TACAAATA AATGCCTTAA chr2R:6692492-6692612 75 4.53e-04 TGTAAGGATG TACAAATA AAGCCCAATT chrX:16890753-16890873 90 4.53e-04 CTAAATGATT TACAAATA AAGCGAAATA chrX:14117951-14118071 80 4.94e-04 TGTTATCTTT AGCACACA CAGCTGTTGA chr3L:8347481-8347601 81 5.08e-04 ACGCCAGCTG TGCACACA ACGTCGCGGT chr3L:16667645-16667765 57 5.76e-04 TCTGTTCACT GGCACACA CACACACACA chr3R:12716400-12716520 28 5.76e-04 CTGTTTGGAC AATAAACA CTGAAGTGAT chr2L:856165-856285 33 5.76e-04 TGCCAAGCTG AATAAACA AGCCGCAAGT chr3R:9529476-9529596 73 5.76e-04 TTTAGAGCTA AATAAACA ACAGAACCAA chr2L:307312-307432 46 5.76e-04 TAAAAGTGGC AGCACATA TCGCACATAA chr3R:16981092-16981212 63 5.76e-04 GGCCATATGG AATAAACA TGCACTTGTA chr3L:11347629-11347749 97 5.76e-04 CACATGTTTT AATAAACA AGAGCATATC chr2R:10151187-10151307 72 5.76e-04 ATAGAGTGAG AATAAACA GAATTAAAAT chr3L:17007379-17007499 34 6.48e-04 GATTTCTGTT TGCACATA ACTAAAGTTT chr3L:4025869-4025989 52 6.48e-04 TGTTTATCAG CGCAAACA AAAGCCGTCG chr3R:14479755-14479875 72 6.48e-04 GTATGTGGAG TATAAACA ACAAAGGCAG chr3L:19847104-19847224 7 6.48e-04 GTATTA TGCACATA CATACATTGG chrX:3282083-3282203 92 6.48e-04 GTTTTTGAAA CGCAAACA AATGTCAAGC chr3R:10166532-10166652 33 6.48e-04 GCCCTCGAAA TATAAACA TTGTCCGCAG chr3L:3078932-3079052 18 7.43e-04 ACGAATGGCG AATAAATA AAAAACGCGA chr3L:11258492-11258612 109 7.43e-04 TTCTAAACTG AATAAATA GATT chr2R:22387332-22387452 27 7.43e-04 CAGCGAGTTG AATAAATA TTTGCCATAC chr2R:16225494-16225614 95 7.43e-04 GGCCTGCCAT AATAAATA TGCCCTTGAG chr3R:25870555-25870675 19 7.43e-04 taaacagatg aataaata aaGCCTGGGT chr2R:19269765-19269885 33 7.43e-04 GCGCTTCACA GATAAACA AGCGGCCAAC chr3R:16168207-16168327 88 7.43e-04 TAGACATGTG AATAAATA AGAAAACAGC chr3R:30537098-30537218 77 8.17e-04 TGCTGGGGTA TATAAATA AAGCTGCCAA chr2R:21640403-21640523 92 8.17e-04 CTCGGCGCTT CGCAAATA ATACTCGTTC chr3L:8675137-8675257 75 8.75e-04 GCAGATACAC AGTACACA GCACAAAAAA chr3R:21584721-21584841 41 8.75e-04 CCTCACGCGA GATAAATA ACTATGTACC chr2R:24629562-24629682 46 9.35e-04 AAGTACTGCA AGTACATA TATATCATCA chrX:18082847-18082967 60 9.81e-04 TACATATGTA TGTACATA GCTATATCAT chr3R:16655311-16655431 64 9.81e-04 CATTTACATA TGTACATA TGTACAGAAA chrX:13626039-13626159 52 9.81e-04 TACACATGTA TGTACATA TGTACATTTG chr3L:2254450-2254570 50 9.81e-04 CTAATTCATG CGTAAACA TTTGCGCTTG chr3L:19845633-19845753 12 9.81e-04 GTATTAGATA TGTACATA TGTGGCCCTG chr3L:11281023-11281143 28 9.81e-04 tctatataca tgtacata tgtatctaca chr2R:10013327-10013447 68 1.07e-03 GTTTCACAAT TACACACA AATCAAAACT chr2R:7689935-7690055 97 1.07e-03 GCACGCACGA TACACACA CGCACACCCA chr3R:16234278-16234398 21 1.16e-03 CGCCTCCGAA CACAAACA TTATTAATGC chr3L:11278545-11278665 36 1.27e-03 ATATATGATA TATACACA CGGTATGGGG chr3R:29891322-29891442 65 1.33e-03 GTTTGCCAAA GATACACA AGTCTGGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21198136-21198256 1.9e-05 65_[+1]_47 chr2L:18151893-18152013 1.9e-05 35_[+1]_77 chrX:515842-515962 1.9e-05 83_[+1]_29 chr2R:24746040-24746160 1.9e-05 88_[+1]_24 chr3R:30198973-30199093 1.9e-05 3_[+1]_109 chr3R:31603871-31603991 1.9e-05 16_[+1]_96 chr3L:12796371-12796491 1.9e-05 60_[+1]_52 chr3L:15689672-15689792 1.9e-05 82_[+1]_30 chr2R:15480307-15480427 3.9e-05 11_[+1]_101 chr3L:15548940-15549060 3.9e-05 45_[+1]_67 chr3R:23284391-23284511 3.9e-05 29_[+1]_83 chr2R:21076902-21077022 3.9e-05 40_[+1]_72 chr2L:4829165-4829285 3.9e-05 77_[+1]_35 chr2L:13882046-13882166 7.9e-05 103_[+1]_9 chr3R:19621079-19621199 7.9e-05 94_[+1]_18 chr3R:29757370-29757490 7.9e-05 81_[+1]_31 chr2L:11845298-11845418 7.9e-05 85_[+1]_27 chr3L:17006228-17006348 7.9e-05 89_[+1]_23 chr3L:8074165-8074285 7.9e-05 21_[+1]_91 chr2R:8120564-8120684 7.9e-05 17_[+1]_95 chr2R:6686937-6687057 7.9e-05 39_[+1]_73 chr3R:23013612-23013732 7.9e-05 17_[+1]_95 chrX:13633421-13633541 7.9e-05 41_[+1]_71 chr3R:18296251-18296371 7.9e-05 88_[+1]_24 chr3L:11442047-11442167 7.9e-05 22_[+1]_90 chr2R:18334381-18334501 7.9e-05 56_[+1]_56 chr3R:25236913-25237033 7.9e-05 36_[+1]_76 chr2R:21549134-21549254 0.00011 63_[+1]_49 chr3L:156707-156827 0.00011 58_[+1]_54 chr3R:28587177-28587297 0.00011 41_[+1]_71 chr3L:9696036-9696156 0.00011 51_[+1]_61 chr2R:22390345-22390465 0.00011 16_[+1]_96 chr2L:1637981-1638101 0.00011 54_[+1]_58 chr3L:11286623-11286743 0.00011 47_[+1]_65 chr3R:25448927-25449047 0.00011 68_[+1]_44 chr3L:15150195-15150315 0.00013 58_[+1]_54 chrX:16917581-16917701 0.00013 44_[+1]_68 chr2R:11192631-11192751 0.00013 83_[+1]_29 chr3R:20545801-20545921 0.00013 78_[+1]_34 chr2L:18864226-18864346 0.00013 91_[+1]_21 chr2L:9509810-9509930 0.00015 27_[+1]_85 chrX:12889270-12889390 0.00015 62_[+1]_50 chr2L:12506971-12507091 0.00015 49_[+1]_63 chr2R:19125689-19125809 0.00015 26_[+1]_86 chr3R:22631250-22631370 0.00018 109_[+1]_3 chr3R:27986934-27987054 0.00018 72_[+1]_40 chr2L:1125545-1125665 0.00018 25_[+1]_87 chr2L:1735258-1735378 0.00018 71_[+1]_41 chr3R:17966145-17966265 0.00018 41_[+1]_71 chrX:13322586-13322706 0.00018 51_[+1]_61 chr2R:18605452-18605572 0.00024 108_[+1]_4 chr2R:22669213-22669333 0.00024 72_[+1]_40 chr3R:4911191-4911311 0.00024 76_[+1]_36 chr2L:18549636-18549756 0.00024 20_[+1]_92 chr2R:21082660-21082780 0.00024 107_[+1]_5 chr2R:10304286-10304406 0.00024 81_[+1]_31 chr3R:30802306-30802426 0.00024 52_[+1]_60 chr3R:8155911-8156031 0.00024 71_[+1]_41 chrX:12749989-12750109 0.00024 47_[+1]_65 chr3R:19151987-19152107 0.00024 70_[+1]_42 chr3R:19613066-19613186 0.00024 86_[+1]_26 chrX:3869253-3869373 0.00027 92_[+1]_20 chr2R:11206135-11206255 0.00027 61_[+1]_51 chr3L:7866818-7866938 0.0003 68_[+1]_44 chr2L:20935509-20935629 0.0003 43_[+1]_69 chr2L:17450231-17450351 0.0003 41_[+1]_71 chr3L:9020600-9020720 0.0003 34_[+1]_78 chr3R:20263084-20263204 0.0003 22_[+1]_90 chr3R:31758925-31759045 0.0003 38_[+1]_74 chr3L:20730992-20731112 0.00033 100_[+1]_12 chrX:12667139-12667259 0.00033 48_[+1]_64 chr2L:20390103-20390223 0.00036 109_[+1]_3 chr3R:8356624-8356744 0.00036 41_[+1]_71 chr2R:17272597-17272717 0.00041 109_[+1]_3 chr3R:5746795-5746915 0.00041 39_[+1]_73 chr2L:2168316-2168436 0.00041 98_[+1]_14 chr3L:17791634-17791754 0.00041 36_[+1]_76 chr3R:20273694-20273814 0.00041 104_[+1]_8 chr2L:9389605-9389725 0.00041 76_[+1]_36 chr3L:3932850-3932970 0.00041 59_[+1]_53 chr3L:16356554-16356674 0.00041 87_[+1]_25 chr3R:17526196-17526316 0.00045 98_[+1]_14 chr2L:12493269-12493389 0.00045 47_[+1]_65 chr3L:20124306-20124426 0.00045 72_[+1]_40 chr2R:20270935-20271055 0.00045 76_[+1]_36 chr2R:6692492-6692612 0.00045 74_[+1]_38 chrX:16890753-16890873 0.00045 89_[+1]_23 chrX:14117951-14118071 0.00049 79_[+1]_33 chr3L:8347481-8347601 0.00051 80_[+1]_32 chr3L:16667645-16667765 0.00058 56_[+1]_56 chr3R:12716400-12716520 0.00058 27_[+1]_85 chr2L:856165-856285 0.00058 32_[+1]_80 chr3R:9529476-9529596 0.00058 72_[+1]_40 chr2L:307312-307432 0.00058 45_[+1]_67 chr3R:16981092-16981212 0.00058 62_[+1]_50 chr3L:11347629-11347749 0.00058 96_[+1]_16 chr2R:10151187-10151307 0.00058 71_[+1]_41 chr3L:17007379-17007499 0.00065 33_[+1]_79 chr3L:4025869-4025989 0.00065 51_[+1]_61 chr3R:14479755-14479875 0.00065 71_[+1]_41 chr3L:19847104-19847224 0.00065 6_[+1]_106 chrX:3282083-3282203 0.00065 91_[+1]_21 chr3R:10166532-10166652 0.00065 32_[+1]_80 chr3L:3078932-3079052 0.00074 17_[+1]_95 chr3L:11258492-11258612 0.00074 108_[+1]_4 chr2R:22387332-22387452 0.00074 26_[+1]_86 chr2R:16225494-16225614 0.00074 94_[+1]_18 chr3R:25870555-25870675 0.00074 18_[+1]_94 chr2R:19269765-19269885 0.00074 32_[+1]_80 chr3R:16168207-16168327 0.00074 87_[+1]_25 chr3R:30537098-30537218 0.00082 76_[+1]_36 chr2R:21640403-21640523 0.00082 91_[+1]_21 chr3L:8675137-8675257 0.00087 74_[+1]_38 chr3R:21584721-21584841 0.00087 40_[+1]_72 chr2R:24629562-24629682 0.00093 45_[+1]_67 chrX:18082847-18082967 0.00098 59_[+1]_53 chr3R:16655311-16655431 0.00098 63_[+1]_49 chrX:13626039-13626159 0.00098 51_[+1]_61 chr3L:2254450-2254570 0.00098 49_[+1]_63 chr3L:19845633-19845753 0.00098 11_[+1]_101 chr3L:11281023-11281143 0.00098 27_[+1]_85 chr2R:10013327-10013447 0.0011 67_[+1]_45 chr2R:7689935-7690055 0.0011 96_[+1]_16 chr3R:16234278-16234398 0.0012 20_[+1]_92 chr3L:11278545-11278665 0.0013 35_[+1]_77 chr3R:29891322-29891442 0.0013 64_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGYAAAYA width=8 seqs=126 chr3R:21198136-21198256 ( 66) AGCAAACA 1 chr2L:18151893-18152013 ( 36) AGCAAACA 1 chrX:515842-515962 ( 84) AGCAAACA 1 chr2R:24746040-24746160 ( 89) AGCAAACA 1 chr3R:30198973-30199093 ( 4) AGCAAACA 1 chr3R:31603871-31603991 ( 17) AGCAAACA 1 chr3L:12796371-12796491 ( 61) AGCAAACA 1 chr3L:15689672-15689792 ( 83) AGCAAACA 1 chr2R:15480307-15480427 ( 12) TGCAAACA 1 chr3L:15548940-15549060 ( 46) TGCAAACA 1 chr3R:23284391-23284511 ( 30) TGCAAACA 1 chr2R:21076902-21077022 ( 41) TGCAAACA 1 chr2L:4829165-4829285 ( 78) TGCAAACA 1 chr2L:13882046-13882166 ( 104) AGCAAATA 1 chr3R:19621079-19621199 ( 95) GGCAAACA 1 chr3R:29757370-29757490 ( 82) GGCAAACA 1 chr2L:11845298-11845418 ( 86) AGCAAATA 1 chr3L:17006228-17006348 ( 90) GGCAAACA 1 chr3L:8074165-8074285 ( 22) GGCAAACA 1 chr2R:8120564-8120684 ( 18) GGCAAACA 1 chr2R:6686937-6687057 ( 40) AGCAAATA 1 chr3R:23013612-23013732 ( 18) AGCAAATA 1 chrX:13633421-13633541 ( 42) AGCAAATA 1 chr3R:18296251-18296371 ( 89) AGCAAATA 1 chr3L:11442047-11442167 ( 23) GGCAAACA 1 chr2R:18334381-18334501 ( 57) AGCAAATA 1 chr3R:25236913-25237033 ( 37) AGCAAATA 1 chr2R:21549134-21549254 ( 64) TGCAAATA 1 chr3L:156707-156827 ( 59) TGCAAATA 1 chr3R:28587177-28587297 ( 42) TGCAAATA 1 chr3L:9696036-9696156 ( 52) TGCAAATA 1 chr2R:22390345-22390465 ( 17) TGCAAATA 1 chr2L:1637981-1638101 ( 55) TGCAAATA 1 chr3L:11286623-11286743 ( 48) TGCAAATA 1 chr3R:25448927-25449047 ( 69) TGCAAATA 1 chr3L:15150195-15150315 ( 59) GGCAAATA 1 chrX:16917581-16917701 ( 45) GGCAAATA 1 chr2R:11192631-11192751 ( 84) GGCAAATA 1 chr3R:20545801-20545921 ( 79) GGCAAATA 1 chr2L:18864226-18864346 ( 92) GGCAAATA 1 chr2L:9509810-9509930 ( 28) AGTAAACA 1 chrX:12889270-12889390 ( 63) AGTAAACA 1 chr2L:12506971-12507091 ( 50) AGTAAACA 1 chr2R:19125689-19125809 ( 27) AGTAAACA 1 chr3R:22631250-22631370 ( 110) TGTAAACA 1 chr3R:27986934-27987054 ( 73) TGTAAACA 1 chr2L:1125545-1125665 ( 26) TGTAAACA 1 chr2L:1735258-1735378 ( 72) TGTAAACA 1 chr3R:17966145-17966265 ( 42) TGTAAACA 1 chrX:13322586-13322706 ( 52) TGTAAACA 1 chr2R:18605452-18605572 ( 109) GGTAAACA 1 chr2R:22669213-22669333 ( 73) GGTAAACA 1 chr3R:4911191-4911311 ( 77) GGTAAACA 1 chr2L:18549636-18549756 ( 21) GGTAAACA 1 chr2R:21082660-21082780 ( 108) AGTAAATA 1 chr2R:10304286-10304406 ( 82) GGTAAACA 1 chr3R:30802306-30802426 ( 53) GGTAAACA 1 chr3R:8155911-8156031 ( 72) AGTAAATA 1 chrX:12749989-12750109 ( 48) AGTAAATA 1 chr3R:19151987-19152107 ( 71) AGTAAATA 1 chr3R:19613066-19613186 ( 87) GGTAAACA 1 chrX:3869253-3869373 ( 93) TGTAAATA 1 chr2R:11206135-11206255 ( 62) TGTAAATA 1 chr3L:7866818-7866938 ( 69) GGTAAATA 1 chr2L:20935509-20935629 ( 44) GGTAAATA 1 chr2L:17450231-17450351 ( 42) GGTAAATA 1 chr3L:9020600-9020720 ( 35) GGTAAATA 1 chr3R:20263084-20263204 ( 23) GGTAAATA 1 chr3R:31758925-31759045 ( 39) GGTAAATA 1 chr3L:20730992-20731112 ( 101) AACAAACA 1 chrX:12667139-12667259 ( 49) AACAAACA 1 chr2L:20390103-20390223 ( 110) TACAAACA 1 chr3R:8356624-8356744 ( 42) TACAAACA 1 chr2R:17272597-17272717 ( 110) AACAAATA 1 chr3R:5746795-5746915 ( 40) AACAAATA 1 chr2L:2168316-2168436 ( 99) AACAAATA 1 chr3L:17791634-17791754 ( 37) AACAAATA 1 chr3R:20273694-20273814 ( 105) AACAAATA 1 chr2L:9389605-9389725 ( 77) AACAAATA 1 chr3L:3932850-3932970 ( 60) AACAAATA 1 chr3L:16356554-16356674 ( 88) AACAAATA 1 chr3R:17526196-17526316 ( 99) TACAAATA 1 chr2L:12493269-12493389 ( 48) TACAAATA 1 chr3L:20124306-20124426 ( 73) TACAAATA 1 chr2R:20270935-20271055 ( 77) TACAAATA 1 chr2R:6692492-6692612 ( 75) TACAAATA 1 chrX:16890753-16890873 ( 90) TACAAATA 1 chrX:14117951-14118071 ( 80) AGCACACA 1 chr3L:8347481-8347601 ( 81) TGCACACA 1 chr3L:16667645-16667765 ( 57) GGCACACA 1 chr3R:12716400-12716520 ( 28) AATAAACA 1 chr2L:856165-856285 ( 33) AATAAACA 1 chr3R:9529476-9529596 ( 73) AATAAACA 1 chr2L:307312-307432 ( 46) AGCACATA 1 chr3R:16981092-16981212 ( 63) AATAAACA 1 chr3L:11347629-11347749 ( 97) AATAAACA 1 chr2R:10151187-10151307 ( 72) AATAAACA 1 chr3L:17007379-17007499 ( 34) TGCACATA 1 chr3L:4025869-4025989 ( 52) CGCAAACA 1 chr3R:14479755-14479875 ( 72) TATAAACA 1 chr3L:19847104-19847224 ( 7) TGCACATA 1 chrX:3282083-3282203 ( 92) CGCAAACA 1 chr3R:10166532-10166652 ( 33) TATAAACA 1 chr3L:3078932-3079052 ( 18) AATAAATA 1 chr3L:11258492-11258612 ( 109) AATAAATA 1 chr2R:22387332-22387452 ( 27) AATAAATA 1 chr2R:16225494-16225614 ( 95) AATAAATA 1 chr3R:25870555-25870675 ( 19) AATAAATA 1 chr2R:19269765-19269885 ( 33) GATAAACA 1 chr3R:16168207-16168327 ( 88) AATAAATA 1 chr3R:30537098-30537218 ( 77) TATAAATA 1 chr2R:21640403-21640523 ( 92) CGCAAATA 1 chr3L:8675137-8675257 ( 75) AGTACACA 1 chr3R:21584721-21584841 ( 41) GATAAATA 1 chr2R:24629562-24629682 ( 46) AGTACATA 1 chrX:18082847-18082967 ( 60) TGTACATA 1 chr3R:16655311-16655431 ( 64) TGTACATA 1 chrX:13626039-13626159 ( 52) TGTACATA 1 chr3L:2254450-2254570 ( 50) CGTAAACA 1 chr3L:19845633-19845753 ( 12) TGTACATA 1 chr3L:11281023-11281143 ( 28) TGTACATA 1 chr2R:10013327-10013447 ( 68) TACACACA 1 chr2R:7689935-7690055 ( 97) TACACACA 1 chr3R:16234278-16234398 ( 21) CACAAACA 1 chr3L:11278545-11278665 ( 36) TATACACA 1 chr3R:29891322-29891442 ( 65) GATACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.11661 E= 6.2e-026 44 -240 12 21 12 -1362 174 -1362 -1362 141 -1362 60 177 -1362 -1362 -1362 156 -63 -1362 -1362 177 -1362 -1362 -1362 -1362 121 -1362 81 177 -1362 -1362 -1362 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 6.2e-026 0.396825 0.039683 0.222222 0.341270 0.317460 0.000000 0.682540 0.000000 0.000000 0.555556 0.000000 0.444444 1.000000 0.000000 0.000000 0.000000 0.865079 0.134921 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.484127 0.000000 0.515873 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 regular expression -------------------------------------------------------------------------------- [ATG][GA][CT]AAA[TC]A -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TRTTTRCH MEME-2 width = 8 sites = 111 llr = 772 E-value = 4.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5:::5:3 pos.-specific C ::::::72 probability G :5:2:5:: matrix T a:a8a:34 bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 ******* (10.0 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TGTTTGCT consensus A ATA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21055954-21056074 1 1.91e-05 . TGTTTGCT TCTTTGTGGC chr3L:11258492-11258612 27 1.91e-05 TTTAACCCAT TGTTTGCT CCTGGCTTTG chr3L:11107581-11107701 34 1.91e-05 TTATTCATTT TGTTTGCT TGTCAGTCAC chr3L:15548940-15549060 106 1.91e-05 AGTGATCCGG TGTTTGCT TAGTtac chr3L:2469779-2469899 23 1.91e-05 TTGTATACCC TGTTTGCT TAGCTGCTTC chr3L:11788261-11788381 85 1.91e-05 TGAACAAAGG TGTTTGCT TTTGGGATTG chrX:16890753-16890873 35 1.91e-05 GATTTGGTGG TGTTTGCT CGGCTTCAAT chr3L:6612777-6612897 47 3.81e-05 CCCACTGTTC TGTTTGCA TTGCTTATCA chr2R:23747317-23747437 11 3.81e-05 GAGCTGCCTG TGTTTGCA CACTTGCTTA chr3R:25448927-25449047 36 3.81e-05 GCTGCGCAAA TGTTTGCA CAAAAAGAGG chr2L:19412102-19412222 58 3.81e-05 AAAATAATGT TGTTTGCA TTCCTCTCGC chr2R:18605452-18605572 87 5.17e-05 CAAACAGCTG TGTTTGCC CATGTTTGGC chr3R:29891322-29891442 54 5.17e-05 GTAATTTCTG TGTTTGCC AAAGATACAC chr2R:13723356-13723476 70 5.17e-05 TAGTGTTTAC TGTTTGCC CTTCATATTT chr2R:10018950-10019070 92 5.17e-05 TGACTTTTGA TGTTTGCC TGTGGGCAAC chr2L:8171614-8171734 93 5.17e-05 TGAATCTGTT TGTTTGCC CAAGGGCGGC chrX:15602549-15602669 39 5.17e-05 TATATTCATT TGTTTGCC AATCAGCCTG chr3R:31758925-31759045 5 5.17e-05 TCAG TGTTTGCC TTTGCATAAT chr3L:7866818-7866938 45 1.07e-04 CATAAGCTAC TATTTGCT TAAGGCTCCG chr2L:2165729-2165849 52 1.07e-04 CCTATAGATG TGTTTACT TTCTGCACGT chr3R:28587177-28587297 110 1.07e-04 tctatttatt tatttGCT TTA chrX:6592199-6592319 55 1.07e-04 TGTCTGTTTG TATTTGCT TTTCCGCTTA chr3R:12716400-12716520 59 1.07e-04 CATAAACAAT TGTTTACT GCCAGAATTG chr2R:18774919-18775039 76 1.07e-04 CTCGGTCCTC TGTTTACT TGCCAATTAA chr3L:8675137-8675257 38 1.07e-04 CTTGTGATCT TGTTTACT GTTTAGCGAC chr3R:7217312-7217432 104 1.07e-04 AAGGTGACAA TATTTGCT TAAGATTGG chr2L:413069-413189 30 1.07e-04 TTGATATAAC TATTTGCT GTGTTGTACC chr3R:14472692-14472812 85 1.07e-04 TATTTATTTG TATTTGCT TATCAGCGGC chr3L:11286623-11286743 12 1.07e-04 AACTATTTGC TATTTGCT TTTTCGAAAC chr3R:22518461-22518581 61 1.07e-04 GGCGTGTCAA TATTTGCT TTATTTAACT chr2L:6080508-6080628 27 1.61e-04 TGTTCCCTAA TATTTGCA CTCTGATTGC chr3L:12350459-12350579 60 1.61e-04 GAGGCTGCGA TATTTGCA CAGTTGTGTG chr2L:7047926-7048046 40 1.61e-04 GCCATATTGA TATTTGCA CAACTTATGA chr3L:11278545-11278665 104 1.61e-04 CCGTATTCTT TATTTGCA TAGCAATTT chrX:19306712-19306832 74 1.61e-04 CATAAAGGAG TATTTGCA TTGGCCTAAC chrX:3282083-3282203 69 1.61e-04 TGTTGCTCAA TATTTGCA TATTTGTTTT chr2R:9190157-9190277 70 1.61e-04 TGGTTGTTAT TGTTTACA AGCCACTTTT chr3R:17966145-17966265 99 1.61e-04 ATCGAAGTAT TATTTGCA TACATCTACG chr2R:19269765-19269885 108 1.61e-04 TGTGTTGATA TATTTGCA AAATT chr3R:25236913-25237033 84 1.61e-04 TACGAATTGA TATTTGCA CTTTATTAAA chr2L:17388213-17388333 22 1.61e-04 AGCCCAGTTC TGTTTACA TCACCGACTC chr3L:2573105-2573225 49 2.00e-04 TCAAAGTGTT TATTTGCC AGAGATAAGC chr2L:9509810-9509930 85 2.00e-04 CGGAAGACTT TATTTGCC TTGTATGTCT chr3R:13441899-13442019 59 2.00e-04 GTTCTTTAAA TATTTGCC GGGTGGCATA chr3L:2254450-2254570 66 2.00e-04 CATTTGCGCT TGTTTACC CAACATTAAT chr2R:22062406-22062526 39 2.00e-04 ACAATGTATT TGTTTACC TTCTCGATTT chr3R:28588504-28588624 85 2.00e-04 ATTGCGCGCG TGTTTACC ATAGAAAACA chr2R:6692492-6692612 54 2.00e-04 AAGATTTTCT TATTTGCC CTTTGTAAGG chr3L:20406423-20406543 34 2.40e-04 atttatttat tatttact taGCGCTTTA chr3L:10679835-10679955 19 2.40e-04 TTATGTATTG TATTTACT GTTTATTTAG chr3L:3078932-3079052 59 2.79e-04 CGTGTGTACA TATTTACA CACAATTTAC chr2R:22205656-22205776 62 2.79e-04 TATGGTTTCA TATTTACA TGGTCTTTTG chr4:167690-167810 32 2.79e-04 AATAACAAAT TATTTACA TGAGCAGCCG chr3R:14479755-14479875 41 2.79e-04 GCTGTGAACT TATTTACA TACTTATCGG chr3L:20124306-20124426 42 2.79e-04 CGAAGTTTTG TATTTACA CTTGGCATAC chr2R:15846375-15846495 89 3.34e-04 TATGGCTTAC TATTTACC TAGCTGAGCT chr2L:6085954-6086074 110 3.34e-04 TGCTATCGCT TGTTTGTT TAT chrX:3869253-3869373 26 3.34e-04 CTGTTATCTA TGTTTGTT TTCTTTACGG chr2R:17085655-17085775 66 3.34e-04 ATTTATGAGA TATTTACC TGCAAAGTCA chr3L:13986473-13986593 62 3.34e-04 AACGAATGTG TGTTTGTT TAATCATATT chr2R:10304286-10304406 73 3.61e-04 AAGAGATTGT TGTTTGTA GGGTAAACAA chr3L:3931997-3932117 66 3.61e-04 ATTTGCGGCT TGTTTGTA TAAATCTACG chr3L:8695244-8695364 108 3.61e-04 tttttgttgt tgtttgta ttttt chr3L:19847104-19847224 51 3.93e-04 TTTAAACGAC TGTTTGTC TGCCATAAAA chr3R:31603871-31603991 34 3.93e-04 ATCACCATAT TGTGTGCT AGTTTAGTAC chr2R:22669213-22669333 52 4.06e-04 TGAAGATCAT TGTGTGCA CTAGATAAAG chr3R:16655311-16655431 83 4.93e-04 GTACAGAAAG TGTTTATT TTCGTTCCAT chr2L:12046739-12046859 113 4.93e-04 GCAACGCATT TGTTTATT chr3R:19621079-19621199 81 4.93e-04 CGCCGACGAT TGTTTATT AAAAACGGCA chr3L:17007379-17007499 51 4.93e-04 AACTAAAGTT TGTGTGCC GACTGCTCCG chr3L:13912939-13913059 22 4.93e-04 ttatttaatt tatttgtt atttatttGG chr3L:15150195-15150315 48 4.93e-04 TCTGGCTCAA TATTTGTT CTGGGCAAAT chrX:6253013-6253133 81 4.93e-04 GTGTTTGATT TATTTGTT GAGCTGTCGC chr3R:25870555-25870675 39 4.93e-04 GCCTGGGTTT TGTGTGCC CGACCAACCA chr2L:1735258-1735378 32 4.93e-04 CTGAGAATTT TGTTTATT TAGAATGTTT chr2L:16451938-16452058 19 4.93e-04 GCAATTACTT TGTTTATT CCGACGATCT chrX:12667139-12667259 72 4.93e-04 ATTTATTGGT TGTTTATT AAAGTGTTTT chr2R:21640403-21640523 69 4.93e-04 ATAACAACAT TGTTTATT TTGCGCTCGG chr2L:2168316-2168436 45 5.70e-04 TCCACCATAA TGTTTATA TGTATTATGA chr3L:16667645-16667765 25 5.70e-04 TCTGACGTCT TGTTTATA CACTTGCTGC chr2R:21082660-21082780 23 6.63e-04 TAGCGCCTGC TATTTGTC ATCCATGGTT chr3L:19071630-19071750 52 6.63e-04 AACGCTTTTC TGTTTATC TCATATCTGT chr3L:4025869-4025989 42 6.63e-04 ATGCGCAGGT TGTTTATC AGCGCAAACA chr3R:20273694-20273814 60 6.63e-04 TTGATTTACA TGTTTATC TTTATCGGCT chr3L:16670350-16670470 41 6.63e-04 ACTTGGGTGT TATTTGTC TAATTCGACA chrX:13626039-13626159 68 7.01e-04 TATGTACATT TGTGTACA TAAGATAAGG chrX:515842-515962 75 7.01e-04 AAATTCGATT TGTGTaca aagcaaacaa chr3L:11358799-11358919 32 7.01e-04 TCCCCGTCCG TGTGTACA TGACGCCAAT chr3R:30537098-30537218 97 7.01e-04 GCTGCCAAAT TGTGTACA CGGGGCGTAT chrX:20434703-20434823 55 7.83e-04 ATCAAGCACC TATTTATT AAGTGACAAT chrX:16598525-16598645 49 7.83e-04 CGACTAGCGG TATTTATT TTCCAGCCCT chr2L:18151893-18152013 51 7.83e-04 ACAGGGCAAC TATTTATT TTGCTTAGTA chr3L:548985-549105 52 7.83e-04 TCCTTCGCTT TATTTATT TTTCGCTTAT chr3R:8155911-8156031 101 7.83e-04 TCTACACTGC TATTTATT GCGCAGCTTT chr3R:19151987-19152107 51 7.83e-04 TATTTTAATA TATTTATT TAAATTGGAA chr3L:3932850-3932970 12 7.83e-04 CCTGTTGCAA TATTTATT CGCGCTCTGC chr3R:17945905-17946025 43 7.83e-04 TGTATGGCTT TATTTATT TTAGCCAAGT chrX:12749989-12750109 8 8.38e-04 tggtaaa tatttata atatatacac chr3R:20545801-20545921 100 8.38e-04 TAGTCGGCGT TATTTATA CGCGGTTGTA chr3R:10166532-10166652 86 8.38e-04 GTTCAGACGA TATTTATA AAGCTTATCA chr3L:17791634-17791754 82 9.05e-04 TTAAGACAAA TATGTACT TTTTATACAC chr3L:9696036-9696156 67 9.05e-04 ATATCTCTGC TATGTACT TTGTACATAC chr3R:10186213-10186333 31 9.32e-04 GCAATGACAA TATGTACA AGTACACGCT chr3L:17625162-17625282 52 9.32e-04 GCTTTTTGTT TATGTACA AATTCTGTGG chrX:13633421-13633541 27 9.32e-04 AGACATTATG TATGTACA TACCGGTAGC chr2R:11206135-11206255 13 9.32e-04 ACTTTGTCAT TATGTACA GTTGAACTTC chr3R:21584721-21584841 51 9.71e-04 GATAAATAAC TATGTACC CCCCCCCCCC chr3L:12796371-12796491 100 9.71e-04 GGCGATTGAA TATGTACC AACTACTACA chr2R:10151187-10151307 32 9.89e-04 tgtgtgagtg tgtgtgtA ATTGCGCATA chr3L:9614616-9614736 23 1.24e-03 GCTGTTTAAA TATTTGCG CGCCCACATG chr3R:16981092-16981212 38 1.24e-03 TGCCTATTGT TGTTTACG TTTCACTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21055954-21056074 1.9e-05 [+2]_112 chr3L:11258492-11258612 1.9e-05 26_[+2]_86 chr3L:11107581-11107701 1.9e-05 33_[+2]_79 chr3L:15548940-15549060 1.9e-05 105_[+2]_7 chr3L:2469779-2469899 1.9e-05 22_[+2]_90 chr3L:11788261-11788381 1.9e-05 84_[+2]_28 chrX:16890753-16890873 1.9e-05 34_[+2]_78 chr3L:6612777-6612897 3.8e-05 46_[+2]_66 chr2R:23747317-23747437 3.8e-05 10_[+2]_102 chr3R:25448927-25449047 3.8e-05 35_[+2]_77 chr2L:19412102-19412222 3.8e-05 57_[+2]_55 chr2R:18605452-18605572 5.2e-05 86_[+2]_26 chr3R:29891322-29891442 5.2e-05 53_[+2]_59 chr2R:13723356-13723476 5.2e-05 69_[+2]_43 chr2R:10018950-10019070 5.2e-05 91_[+2]_21 chr2L:8171614-8171734 5.2e-05 92_[+2]_20 chrX:15602549-15602669 5.2e-05 38_[+2]_74 chr3R:31758925-31759045 5.2e-05 4_[+2]_108 chr3L:7866818-7866938 0.00011 44_[+2]_68 chr2L:2165729-2165849 0.00011 51_[+2]_61 chr3R:28587177-28587297 0.00011 109_[+2]_3 chrX:6592199-6592319 0.00011 54_[+2]_58 chr3R:12716400-12716520 0.00011 58_[+2]_54 chr2R:18774919-18775039 0.00011 75_[+2]_37 chr3L:8675137-8675257 0.00011 37_[+2]_75 chr3R:7217312-7217432 0.00011 103_[+2]_9 chr2L:413069-413189 0.00011 29_[+2]_83 chr3R:14472692-14472812 0.00011 84_[+2]_28 chr3L:11286623-11286743 0.00011 11_[+2]_101 chr3R:22518461-22518581 0.00011 60_[+2]_52 chr2L:6080508-6080628 0.00016 26_[+2]_86 chr3L:12350459-12350579 0.00016 59_[+2]_53 chr2L:7047926-7048046 0.00016 39_[+2]_73 chr3L:11278545-11278665 0.00016 103_[+2]_9 chrX:19306712-19306832 0.00016 73_[+2]_39 chrX:3282083-3282203 0.00016 68_[+2]_44 chr2R:9190157-9190277 0.00016 69_[+2]_43 chr3R:17966145-17966265 0.00016 98_[+2]_14 chr2R:19269765-19269885 0.00016 107_[+2]_5 chr3R:25236913-25237033 0.00016 83_[+2]_29 chr2L:17388213-17388333 0.00016 21_[+2]_91 chr3L:2573105-2573225 0.0002 48_[+2]_64 chr2L:9509810-9509930 0.0002 84_[+2]_28 chr3R:13441899-13442019 0.0002 58_[+2]_54 chr3L:2254450-2254570 0.0002 65_[+2]_47 chr2R:22062406-22062526 0.0002 38_[+2]_74 chr3R:28588504-28588624 0.0002 84_[+2]_28 chr2R:6692492-6692612 0.0002 53_[+2]_59 chr3L:20406423-20406543 0.00024 33_[+2]_79 chr3L:10679835-10679955 0.00024 18_[+2]_94 chr3L:3078932-3079052 0.00028 58_[+2]_54 chr2R:22205656-22205776 0.00028 61_[+2]_51 chr4:167690-167810 0.00028 31_[+2]_81 chr3R:14479755-14479875 0.00028 40_[+2]_72 chr3L:20124306-20124426 0.00028 41_[+2]_71 chr2R:15846375-15846495 0.00033 88_[+2]_24 chr2L:6085954-6086074 0.00033 109_[+2]_3 chrX:3869253-3869373 0.00033 25_[+2]_87 chr2R:17085655-17085775 0.00033 65_[+2]_47 chr3L:13986473-13986593 0.00033 61_[+2]_51 chr2R:10304286-10304406 0.00036 72_[+2]_40 chr3L:3931997-3932117 0.00036 65_[+2]_47 chr3L:8695244-8695364 0.00036 107_[+2]_5 chr3L:19847104-19847224 0.00039 50_[+2]_62 chr3R:31603871-31603991 0.00039 33_[+2]_79 chr2R:22669213-22669333 0.00041 51_[+2]_61 chr3R:16655311-16655431 0.00049 82_[+2]_30 chr2L:12046739-12046859 0.00049 112_[+2] chr3R:19621079-19621199 0.00049 80_[+2]_32 chr3L:17007379-17007499 0.00049 50_[+2]_62 chr3L:13912939-13913059 0.00049 21_[+2]_91 chr3L:15150195-15150315 0.00049 47_[+2]_65 chrX:6253013-6253133 0.00049 80_[+2]_32 chr3R:25870555-25870675 0.00049 38_[+2]_74 chr2L:1735258-1735378 0.00049 31_[+2]_81 chr2L:16451938-16452058 0.00049 18_[+2]_94 chrX:12667139-12667259 0.00049 71_[+2]_41 chr2R:21640403-21640523 0.00049 68_[+2]_44 chr2L:2168316-2168436 0.00057 44_[+2]_68 chr3L:16667645-16667765 0.00057 24_[+2]_88 chr2R:21082660-21082780 0.00066 22_[+2]_90 chr3L:19071630-19071750 0.00066 51_[+2]_61 chr3L:4025869-4025989 0.00066 41_[+2]_71 chr3R:20273694-20273814 0.00066 59_[+2]_53 chr3L:16670350-16670470 0.00066 40_[+2]_72 chrX:13626039-13626159 0.0007 67_[+2]_45 chrX:515842-515962 0.0007 74_[+2]_38 chr3L:11358799-11358919 0.0007 31_[+2]_81 chr3R:30537098-30537218 0.0007 96_[+2]_16 chrX:20434703-20434823 0.00078 54_[+2]_58 chrX:16598525-16598645 0.00078 48_[+2]_64 chr2L:18151893-18152013 0.00078 50_[+2]_62 chr3L:548985-549105 0.00078 51_[+2]_61 chr3R:8155911-8156031 0.00078 100_[+2]_12 chr3R:19151987-19152107 0.00078 50_[+2]_62 chr3L:3932850-3932970 0.00078 11_[+2]_101 chr3R:17945905-17946025 0.00078 42_[+2]_70 chrX:12749989-12750109 0.00084 7_[+2]_105 chr3R:20545801-20545921 0.00084 99_[+2]_13 chr3R:10166532-10166652 0.00084 85_[+2]_27 chr3L:17791634-17791754 0.00091 81_[+2]_31 chr3L:9696036-9696156 0.00091 66_[+2]_46 chr3R:10186213-10186333 0.00093 30_[+2]_82 chr3L:17625162-17625282 0.00093 51_[+2]_61 chrX:13633421-13633541 0.00093 26_[+2]_86 chr2R:11206135-11206255 0.00093 12_[+2]_100 chr3R:21584721-21584841 0.00097 50_[+2]_62 chr3L:12796371-12796491 0.00097 99_[+2]_13 chr2R:10151187-10151307 0.00099 31_[+2]_81 chr3L:9614616-9614736 0.0012 22_[+2]_90 chr3R:16981092-16981212 0.0012 37_[+2]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTRCH width=8 seqs=111 chr3L:21055954-21056074 ( 1) TGTTTGCT 1 chr3L:11258492-11258612 ( 27) TGTTTGCT 1 chr3L:11107581-11107701 ( 34) TGTTTGCT 1 chr3L:15548940-15549060 ( 106) TGTTTGCT 1 chr3L:2469779-2469899 ( 23) TGTTTGCT 1 chr3L:11788261-11788381 ( 85) TGTTTGCT 1 chrX:16890753-16890873 ( 35) TGTTTGCT 1 chr3L:6612777-6612897 ( 47) TGTTTGCA 1 chr2R:23747317-23747437 ( 11) TGTTTGCA 1 chr3R:25448927-25449047 ( 36) TGTTTGCA 1 chr2L:19412102-19412222 ( 58) TGTTTGCA 1 chr2R:18605452-18605572 ( 87) TGTTTGCC 1 chr3R:29891322-29891442 ( 54) TGTTTGCC 1 chr2R:13723356-13723476 ( 70) TGTTTGCC 1 chr2R:10018950-10019070 ( 92) TGTTTGCC 1 chr2L:8171614-8171734 ( 93) TGTTTGCC 1 chrX:15602549-15602669 ( 39) TGTTTGCC 1 chr3R:31758925-31759045 ( 5) TGTTTGCC 1 chr3L:7866818-7866938 ( 45) TATTTGCT 1 chr2L:2165729-2165849 ( 52) TGTTTACT 1 chr3R:28587177-28587297 ( 110) TATTTGCT 1 chrX:6592199-6592319 ( 55) TATTTGCT 1 chr3R:12716400-12716520 ( 59) TGTTTACT 1 chr2R:18774919-18775039 ( 76) TGTTTACT 1 chr3L:8675137-8675257 ( 38) TGTTTACT 1 chr3R:7217312-7217432 ( 104) TATTTGCT 1 chr2L:413069-413189 ( 30) TATTTGCT 1 chr3R:14472692-14472812 ( 85) TATTTGCT 1 chr3L:11286623-11286743 ( 12) TATTTGCT 1 chr3R:22518461-22518581 ( 61) TATTTGCT 1 chr2L:6080508-6080628 ( 27) TATTTGCA 1 chr3L:12350459-12350579 ( 60) TATTTGCA 1 chr2L:7047926-7048046 ( 40) TATTTGCA 1 chr3L:11278545-11278665 ( 104) TATTTGCA 1 chrX:19306712-19306832 ( 74) TATTTGCA 1 chrX:3282083-3282203 ( 69) TATTTGCA 1 chr2R:9190157-9190277 ( 70) TGTTTACA 1 chr3R:17966145-17966265 ( 99) TATTTGCA 1 chr2R:19269765-19269885 ( 108) TATTTGCA 1 chr3R:25236913-25237033 ( 84) TATTTGCA 1 chr2L:17388213-17388333 ( 22) TGTTTACA 1 chr3L:2573105-2573225 ( 49) TATTTGCC 1 chr2L:9509810-9509930 ( 85) TATTTGCC 1 chr3R:13441899-13442019 ( 59) TATTTGCC 1 chr3L:2254450-2254570 ( 66) TGTTTACC 1 chr2R:22062406-22062526 ( 39) TGTTTACC 1 chr3R:28588504-28588624 ( 85) TGTTTACC 1 chr2R:6692492-6692612 ( 54) TATTTGCC 1 chr3L:20406423-20406543 ( 34) TATTTACT 1 chr3L:10679835-10679955 ( 19) TATTTACT 1 chr3L:3078932-3079052 ( 59) TATTTACA 1 chr2R:22205656-22205776 ( 62) TATTTACA 1 chr4:167690-167810 ( 32) TATTTACA 1 chr3R:14479755-14479875 ( 41) TATTTACA 1 chr3L:20124306-20124426 ( 42) TATTTACA 1 chr2R:15846375-15846495 ( 89) TATTTACC 1 chr2L:6085954-6086074 ( 110) TGTTTGTT 1 chrX:3869253-3869373 ( 26) TGTTTGTT 1 chr2R:17085655-17085775 ( 66) TATTTACC 1 chr3L:13986473-13986593 ( 62) TGTTTGTT 1 chr2R:10304286-10304406 ( 73) TGTTTGTA 1 chr3L:3931997-3932117 ( 66) TGTTTGTA 1 chr3L:8695244-8695364 ( 108) TGTTTGTA 1 chr3L:19847104-19847224 ( 51) TGTTTGTC 1 chr3R:31603871-31603991 ( 34) TGTGTGCT 1 chr2R:22669213-22669333 ( 52) TGTGTGCA 1 chr3R:16655311-16655431 ( 83) TGTTTATT 1 chr2L:12046739-12046859 ( 113) TGTTTATT 1 chr3R:19621079-19621199 ( 81) TGTTTATT 1 chr3L:17007379-17007499 ( 51) TGTGTGCC 1 chr3L:13912939-13913059 ( 22) TATTTGTT 1 chr3L:15150195-15150315 ( 48) TATTTGTT 1 chrX:6253013-6253133 ( 81) TATTTGTT 1 chr3R:25870555-25870675 ( 39) TGTGTGCC 1 chr2L:1735258-1735378 ( 32) TGTTTATT 1 chr2L:16451938-16452058 ( 19) TGTTTATT 1 chrX:12667139-12667259 ( 72) TGTTTATT 1 chr2R:21640403-21640523 ( 69) TGTTTATT 1 chr2L:2168316-2168436 ( 45) TGTTTATA 1 chr3L:16667645-16667765 ( 25) TGTTTATA 1 chr2R:21082660-21082780 ( 23) TATTTGTC 1 chr3L:19071630-19071750 ( 52) TGTTTATC 1 chr3L:4025869-4025989 ( 42) TGTTTATC 1 chr3R:20273694-20273814 ( 60) TGTTTATC 1 chr3L:16670350-16670470 ( 41) TATTTGTC 1 chrX:13626039-13626159 ( 68) TGTGTACA 1 chrX:515842-515962 ( 75) TGTGTACA 1 chr3L:11358799-11358919 ( 32) TGTGTACA 1 chr3R:30537098-30537218 ( 97) TGTGTACA 1 chrX:20434703-20434823 ( 55) TATTTATT 1 chrX:16598525-16598645 ( 49) TATTTATT 1 chr2L:18151893-18152013 ( 51) TATTTATT 1 chr3L:548985-549105 ( 52) TATTTATT 1 chr3R:8155911-8156031 ( 101) TATTTATT 1 chr3R:19151987-19152107 ( 51) TATTTATT 1 chr3L:3932850-3932970 ( 12) TATTTATT 1 chr3R:17945905-17946025 ( 43) TATTTATT 1 chrX:12749989-12750109 ( 8) TATTTATA 1 chr3R:20545801-20545921 ( 100) TATTTATA 1 chr3R:10166532-10166652 ( 86) TATTTATA 1 chr3L:17791634-17791754 ( 82) TATGTACT 1 chr3L:9696036-9696156 ( 67) TATGTACT 1 chr3R:10186213-10186333 ( 31) TATGTACA 1 chr3L:17625162-17625282 ( 52) TATGTACA 1 chrX:13633421-13633541 ( 27) TATGTACA 1 chr2R:11206135-11206255 ( 13) TATGTACA 1 chr3R:21584721-21584841 ( 51) TATGTACC 1 chr3L:12796371-12796491 ( 100) TATGTACC 1 chr2R:10151187-10151307 ( 32) TGTGTGTA 1 chr3L:9614616-9614736 ( 23) TATTTGCG 1 chr3R:16981092-16981212 ( 38) TGTTTACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.20458 E= 4.1e-012 -1344 -1344 -1344 177 76 -1344 130 -1344 -1344 -1344 -1344 177 -1344 -1344 -42 153 -1344 -1344 -1344 177 73 -1344 133 -1344 -1344 169 -1344 14 23 16 -350 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 4.1e-012 0.000000 0.000000 0.000000 1.000000 0.495495 0.000000 0.504505 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.153153 0.846847 0.000000 0.000000 0.000000 1.000000 0.486486 0.000000 0.513514 0.000000 0.000000 0.675676 0.000000 0.324324 0.342342 0.234234 0.018018 0.405405 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCH MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]TTT[GA][CT][TAC] -------------------------------------------------------------------------------- Time 13.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGYGGGG MEME-3 width = 8 sites = 16 llr = 160 E-value = 1.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :::6::3: probability G aa818a8a matrix T :::42::: bits 2.3 ** * * 2.1 ** * * 1.8 ** * * 1.6 *** ** * Relative 1.4 *** **** Entropy 1.1 *** **** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6592199-6592319 24 3.07e-06 TGGGTGGCGG GGGCGGGG GGGTATGGGC chr2R:24963315-24963435 13 3.07e-06 TCGCCAAGAA GGGCGGGG TAAGCAGCGG chr3L:11278545-11278665 51 3.07e-06 ACACGGTATG GGGCGGGG GGGCGTGCCA chr2R:15931215-15931335 73 7.40e-06 GAATGGTAAG GGGTGGGG GGACAGCCCA chr3L:17001203-17001323 5 7.40e-06 CAGT GGGTGGGG CTGGTCTAAA chr2R:10018950-10019070 2 7.40e-06 G GGGTGGGG CAACTAACCG chr2R:18435417-18435537 3 1.05e-05 TC GGGCGGCG AAAAAGGGGG chr2L:8171614-8171734 104 1.05e-05 GTTTGCCCAA GGGCGGCG GGATGGTGG chr3L:3760497-3760617 110 2.38e-05 ATTTCGAGGG GGACGGGG CAA chr3L:8675137-8675257 110 2.38e-05 TGTCGCACTG GGGTGGCG TCA chr2L:18864226-18864346 108 2.38e-05 TAAGCTGTGG GGGCTGGG AGCGA chr3R:31758925-31759045 50 2.38e-05 GTAAATAATC GGGCTGGG CTGCAGGGGG chrX:3282083-3282203 28 2.68e-05 ATGGTTGCGG GGGGGGGG GTGGTTATTA chr2L:20840583-20840703 102 3.93e-05 CGTGCGTTTG GGGTTGGG TTCGTTTTGT chr2R:22390345-22390465 4 3.93e-05 TTT GGATGGGG CACTATGCAA chr2L:20935509-20935629 10 4.83e-05 TAGATATGC GGACGGCG TGTATTGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6592199-6592319 3.1e-06 23_[+3]_89 chr2R:24963315-24963435 3.1e-06 12_[+3]_100 chr3L:11278545-11278665 3.1e-06 50_[+3]_62 chr2R:15931215-15931335 7.4e-06 72_[+3]_40 chr3L:17001203-17001323 7.4e-06 4_[+3]_108 chr2R:10018950-10019070 7.4e-06 1_[+3]_111 chr2R:18435417-18435537 1.1e-05 2_[+3]_110 chr2L:8171614-8171734 1.1e-05 103_[+3]_9 chr3L:3760497-3760617 2.4e-05 109_[+3]_3 chr3L:8675137-8675257 2.4e-05 109_[+3]_3 chr2L:18864226-18864346 2.4e-05 107_[+3]_5 chr3R:31758925-31759045 2.4e-05 49_[+3]_63 chrX:3282083-3282203 2.7e-05 27_[+3]_85 chr2L:20840583-20840703 3.9e-05 101_[+3]_11 chr2R:22390345-22390465 3.9e-05 3_[+3]_109 chr2L:20935509-20935629 4.8e-05 9_[+3]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGYGGGG width=8 seqs=16 chrX:6592199-6592319 ( 24) GGGCGGGG 1 chr2R:24963315-24963435 ( 13) GGGCGGGG 1 chr3L:11278545-11278665 ( 51) GGGCGGGG 1 chr2R:15931215-15931335 ( 73) GGGTGGGG 1 chr3L:17001203-17001323 ( 5) GGGTGGGG 1 chr2R:10018950-10019070 ( 2) GGGTGGGG 1 chr2R:18435417-18435537 ( 3) GGGCGGCG 1 chr2L:8171614-8171734 ( 104) GGGCGGCG 1 chr3L:3760497-3760617 ( 110) GGACGGGG 1 chr3L:8675137-8675257 ( 110) GGGTGGCG 1 chr2L:18864226-18864346 ( 108) GGGCTGGG 1 chr3R:31758925-31759045 ( 50) GGGCTGGG 1 chrX:3282083-3282203 ( 28) GGGGGGGG 1 chr2L:20840583-20840703 ( 102) GGGTTGGG 1 chr2R:22390345-22390465 ( 4) GGATGGGG 1 chr2L:20935509-20935629 ( 10) GGACGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.3e+001 -1064 -1064 229 -1064 -1064 -1064 229 -1064 -64 -1064 199 -1064 -1064 143 -171 35 -1064 -1064 199 -65 -1064 -1064 229 -1064 -1064 26 188 -1064 -1064 -1064 229 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.3e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.562500 0.062500 0.375000 0.000000 0.000000 0.812500 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGGGG MEME-3 regular expression -------------------------------------------------------------------------------- GGG[CT]GG[GC]G -------------------------------------------------------------------------------- Time 19.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTDYGGC MEME-4 width = 8 sites = 32 llr = 275 E-value = 5.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C ::::3::a probability G :3:42aa: matrix T a7a36::: bits 2.3 *** 2.1 *** 1.8 * * *** 1.6 * * *** Relative 1.4 * * *** Entropy 1.1 *** *** (12.4 bits) 0.9 *** *** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTGGC consensus G AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21055954-21056074 11 1.33e-05 TGTTTGCTTC TTTGTGGC TGTCATCATC chr2R:22193030-22193150 43 1.33e-05 ATGCCCGCAC TTTGTGGC CGATTTAATA chr3L:3931997-3932117 57 2.27e-05 ACATCATAAA TTTGCGGC TTGTTTGTAT chr3L:12350459-12350579 72 3.19e-05 TTTGCACAGT TGTGTGGC TTCTCCAAAT chr3R:13441899-13442019 98 3.19e-05 ATGTGTAGCA TGTGTGGC AATTGTCAGT chrX:17465655-17465775 96 3.19e-05 GAATATTCAT TGTGTGGC AATTACCGAA chr3R:21198136-21198256 22 5.09e-05 GTGGCTTTTA TTTATGGC TCCCTTTCAA chr2R:15846375-15846495 77 5.09e-05 TAGTATAAAC TTTATGGC TTACTATTTA chr3L:3760497-3760617 44 5.09e-05 CAGTGTGGAT TTTATGGC CCCGGCTGGA chr2R:22205656-22205776 101 5.09e-05 TTATGAATAT TTTATGGC CTTTGAGTCA chr3R:23284391-23284511 52 5.09e-05 ACTGATACAC TTTATGGC AATAGCGAAG chr2R:22390345-22390465 74 5.09e-05 TGAACCTGAC TTTATGGC CTGCGGTAAT chr3R:28588504-28588624 111 5.09e-05 CAATGCCAAT TTTATGGC TG chrX:16890753-16890873 67 5.09e-05 CGTCCCACCG TTTATGGC CCTAGCTAAA chr3R:28587177-28587297 24 7.66e-05 AATGTGTGCT TTTTTGGC GTAGACTCTC chr2L:8084517-8084637 9 7.66e-05 TGTGTGTG TGTGCGGC GGCAAGGAGT chr2R:9550229-9550349 24 7.66e-05 AAACGATGAG TTTTTGGC CGAACAGAAT chr3L:17006228-17006348 27 7.66e-05 ATCTCAGGTG TTTTTGGC CATAGTCATA chr3L:15689672-15689792 113 7.66e-05 AAGCCGCAAA TGTGCGGC chr2L:11902637-11902757 21 7.66e-05 TCAAAAATGT TGTGCGGC TTGTTTTACC chr3R:30537098-30537218 40 7.66e-05 AAGGCGAATA TGTGCGGC GTATATGCTA chrX:3869253-3869373 37 9.01e-05 GTTTGTTTTC TTTACGGC TTTGAGTAAT chrX:12889270-12889390 30 1.13e-04 GGGGATATTC TTTGGGGC ACAGTCGGCC chr3R:17945905-17946025 33 1.13e-04 GTTGGTCTGT TGTATGGC TTTATTTATT chr3R:27986934-27987054 18 1.26e-04 GTAATTGCTA TTTTCGGC GCAACCCATA chr2R:13336716-13336836 96 1.26e-04 AGCGTATGTA TTTTCGGC ATTACTCGCG chr2R:16845506-16845626 109 1.26e-04 GTCCCAGATG TTTTCGGC TGGC chr2R:18605452-18605572 97 1.39e-04 TGTTTGCCCA TGTTTGGC CAAAGGTAAA chr3L:2573105-2573225 104 1.55e-04 TTTTGGCATA TGTGGGGC TCGGAATGG chr2R:16225494-16225614 80 1.78e-04 CGATAAAGAT TTTAGGGC CTGCCATAAT chr3R:4453923-4454043 15 1.91e-04 TTGTTTTAGT TTTTGGGC TTCACTCGGT chrX:12749989-12750109 68 1.91e-04 GCCATAGAAA TTTTGGGC CTGTGAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21055954-21056074 1.3e-05 10_[+4]_102 chr2R:22193030-22193150 1.3e-05 42_[+4]_70 chr3L:3931997-3932117 2.3e-05 56_[+4]_56 chr3L:12350459-12350579 3.2e-05 71_[+4]_41 chr3R:13441899-13442019 3.2e-05 97_[+4]_15 chrX:17465655-17465775 3.2e-05 95_[+4]_17 chr3R:21198136-21198256 5.1e-05 21_[+4]_91 chr2R:15846375-15846495 5.1e-05 76_[+4]_36 chr3L:3760497-3760617 5.1e-05 43_[+4]_69 chr2R:22205656-22205776 5.1e-05 100_[+4]_12 chr3R:23284391-23284511 5.1e-05 51_[+4]_61 chr2R:22390345-22390465 5.1e-05 73_[+4]_39 chr3R:28588504-28588624 5.1e-05 110_[+4]_2 chrX:16890753-16890873 5.1e-05 66_[+4]_46 chr3R:28587177-28587297 7.7e-05 23_[+4]_89 chr2L:8084517-8084637 7.7e-05 8_[+4]_104 chr2R:9550229-9550349 7.7e-05 23_[+4]_89 chr3L:17006228-17006348 7.7e-05 26_[+4]_86 chr3L:15689672-15689792 7.7e-05 112_[+4] chr2L:11902637-11902757 7.7e-05 20_[+4]_92 chr3R:30537098-30537218 7.7e-05 39_[+4]_73 chrX:3869253-3869373 9e-05 36_[+4]_76 chrX:12889270-12889390 0.00011 29_[+4]_83 chr3R:17945905-17946025 0.00011 32_[+4]_80 chr3R:27986934-27987054 0.00013 17_[+4]_95 chr2R:13336716-13336836 0.00013 95_[+4]_17 chr2R:16845506-16845626 0.00013 108_[+4]_4 chr2R:18605452-18605572 0.00014 96_[+4]_16 chr3L:2573105-2573225 0.00016 103_[+4]_9 chr2R:16225494-16225614 0.00018 79_[+4]_33 chr3R:4453923-4454043 0.00019 14_[+4]_98 chrX:12749989-12750109 0.00019 67_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTDYGGC width=8 seqs=32 chr3L:21055954-21056074 ( 11) TTTGTGGC 1 chr2R:22193030-22193150 ( 43) TTTGTGGC 1 chr3L:3931997-3932117 ( 57) TTTGCGGC 1 chr3L:12350459-12350579 ( 72) TGTGTGGC 1 chr3R:13441899-13442019 ( 98) TGTGTGGC 1 chrX:17465655-17465775 ( 96) TGTGTGGC 1 chr3R:21198136-21198256 ( 22) TTTATGGC 1 chr2R:15846375-15846495 ( 77) TTTATGGC 1 chr3L:3760497-3760617 ( 44) TTTATGGC 1 chr2R:22205656-22205776 ( 101) TTTATGGC 1 chr3R:23284391-23284511 ( 52) TTTATGGC 1 chr2R:22390345-22390465 ( 74) TTTATGGC 1 chr3R:28588504-28588624 ( 111) TTTATGGC 1 chrX:16890753-16890873 ( 67) TTTATGGC 1 chr3R:28587177-28587297 ( 24) TTTTTGGC 1 chr2L:8084517-8084637 ( 9) TGTGCGGC 1 chr2R:9550229-9550349 ( 24) TTTTTGGC 1 chr3L:17006228-17006348 ( 27) TTTTTGGC 1 chr3L:15689672-15689792 ( 113) TGTGCGGC 1 chr2L:11902637-11902757 ( 21) TGTGCGGC 1 chr3R:30537098-30537218 ( 40) TGTGCGGC 1 chrX:3869253-3869373 ( 37) TTTACGGC 1 chrX:12889270-12889390 ( 30) TTTGGGGC 1 chr3R:17945905-17946025 ( 33) TGTATGGC 1 chr3R:27986934-27987054 ( 18) TTTTCGGC 1 chr2R:13336716-13336836 ( 96) TTTTCGGC 1 chr2R:16845506-16845626 ( 109) TTTTCGGC 1 chr2R:18605452-18605572 ( 97) TGTTTGGC 1 chr3L:2573105-2573225 ( 104) TGTGGGGC 1 chr2R:16225494-16225614 ( 80) TTTAGGGC 1 chr3R:4453923-4454043 ( 15) TTTTGGGC 1 chrX:12749989-12750109 ( 68) TTTTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 5.0e+003 -1164 -1164 -1164 177 -1164 -1164 61 122 -1164 -1164 -1164 177 23 -1164 88 -6 -1164 43 -39 94 -1164 -1164 229 -1164 -1164 -1164 229 -1164 -1164 226 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.687500 0.000000 0.000000 0.000000 1.000000 0.343750 0.000000 0.375000 0.281250 0.000000 0.281250 0.156250 0.562500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTDYGGC MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]T[GAT][TC]GGC -------------------------------------------------------------------------------- Time 24.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCCGA MEME-5 width = 8 sites = 5 llr = 59 E-value = 3.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :aa:8a:: probability G a::a2:a: matrix T :::::::: bits 2.3 **** ** 2.1 **** ** 1.8 **** *** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCCGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20730992-20731112 11 4.75e-06 TTTTCCTACC GCCGCCGA CGATTATATA chr2L:1043712-1043832 72 4.75e-06 ATGAAAGGAA GCCGCCGA GTCTGAAGTG chr3R:27986934-27987054 97 4.75e-06 CTGATTAGAG GCCGCCGA TAGTGAAAGC chr2L:4829165-4829285 6 4.75e-06 CTTTA GCCGCCGA CTGGCCTCAG chr2R:9546513-9546633 44 9.38e-06 AAAACCAACC GCCGGCGA CAAGCACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20730992-20731112 4.7e-06 10_[+5]_102 chr2L:1043712-1043832 4.7e-06 71_[+5]_41 chr3R:27986934-27987054 4.7e-06 96_[+5]_16 chr2L:4829165-4829285 4.7e-06 5_[+5]_107 chr2R:9546513-9546633 9.4e-06 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCCGA width=8 seqs=5 chr3L:20730992-20731112 ( 11) GCCGCCGA 1 chr2L:1043712-1043832 ( 72) GCCGCCGA 1 chr3R:27986934-27987054 ( 97) GCCGCCGA 1 chr2L:4829165-4829285 ( 6) GCCGCCGA 1 chr2R:9546513-9546633 ( 44) GCCGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 3.2e+004 -897 -897 229 -897 -897 226 -897 -897 -897 226 -897 -897 -897 -897 229 -897 -897 193 -3 -897 -897 226 -897 -897 -897 -897 229 -897 177 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGA MEME-5 regular expression -------------------------------------------------------------------------------- GCCG[CG]CGA -------------------------------------------------------------------------------- Time 30.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:17388213-17388333 1.55e-01 120 chr3R:25236913-25237033 5.16e-02 36_[+1(7.90e-05)]_76 chr2R:21640403-21640523 1.38e-01 120 chr2R:10151187-10151307 5.41e-02 120 chrX:12667139-12667259 4.47e-02 120 chr3R:16168207-16168327 5.63e-02 120 chrX:18511052-18511172 6.53e-02 120 chrX:13322586-13322706 2.69e-01 120 chrX:6264564-6264684 8.47e-01 120 chr2R:18334381-18334501 3.12e-01 56_[+1(7.90e-05)]_56 chrX:14117951-14118071 1.24e-01 120 chr3L:11442047-11442167 7.89e-02 22_[+1(7.90e-05)]_90 chr2R:7242288-7242408 2.35e-01 120 chr2R:11206135-11206255 8.15e-02 120 chr2L:19412102-19412222 3.15e-02 57_[+2(3.81e-05)]_55 chr2L:16451938-16452058 1.72e-01 120 chr3R:18296251-18296371 1.20e-01 88_[+1(7.90e-05)]_24 chrX:2663589-2663709 9.52e-01 120 chr3R:22518461-22518581 5.82e-03 34_[+5(2.08e-05)]_78 chrX:13633421-13633541 1.34e-01 41_[+1(7.90e-05)]_71 chr3L:16310118-16310238 2.37e-01 120 chr3R:20955255-20955375 8.20e-01 120 chr3L:8695244-8695364 3.78e-01 120 chrX:16890753-16890873 3.93e-04 14_[+4(5.09e-05)]_12_[+2(1.91e-05)]_\ 24_[+4(5.09e-05)]_46 chr3R:31758925-31759045 4.41e-05 4_[+2(5.17e-05)]_37_[+3(2.38e-05)]_\ 63 chr3L:16356554-16356674 9.39e-02 120 chr3R:30537098-30537218 1.17e-03 39_[+4(7.66e-05)]_73 chr3L:17625162-17625282 5.54e-01 120 chr2R:19269765-19269885 1.98e-02 120 chr2R:19294795-19294915 9.76e-02 120 chr3L:11285762-11285882 2.90e-01 120 chr2R:7689935-7690055 1.78e-02 120 chr3R:25448927-25449047 8.97e-03 35_[+2(3.81e-05)]_77 chr2R:19125689-19125809 1.95e-02 120 chr2L:8955879-8955999 5.61e-01 120 chr3R:19613066-19613186 1.61e-01 120 chr3R:19907814-19907934 4.39e-01 120 chr3R:17759880-17760000 1.07e-01 120 chr3L:17916273-17916393 3.89e-01 120 chr2R:6692492-6692612 8.46e-02 120 chr3R:17966145-17966265 5.98e-02 120 chr3R:28588504-28588624 5.73e-03 110_[+4(5.09e-05)]_2 chr3R:11812904-11813024 1.63e-01 120 chr2R:23747317-23747437 8.49e-02 10_[+2(3.81e-05)]_102 chr3R:17945905-17946025 1.11e-02 120 chr3R:10166532-10166652 3.08e-02 120 chr2L:18864226-18864346 2.36e-03 107_[+3(2.38e-05)]_5 chr3L:13986473-13986593 4.48e-01 120 chr3R:8117494-8117614 2.57e-01 120 chr3L:11281023-11281143 3.05e-01 120 chrX:17465655-17465775 9.92e-02 95_[+4(3.19e-05)]_17 chr2R:20270935-20271055 1.67e-01 120 chr3L:11286623-11286743 1.76e-02 120 chr2L:11902637-11902757 7.64e-02 20_[+4(7.66e-05)]_92 chr3R:14472692-14472812 4.20e-02 120 chr3L:19845633-19845753 6.25e-02 120 chr2L:1637981-1638101 1.11e-01 120 chr2R:9190157-9190277 1.39e-01 120 chr2R:22390345-22390465 1.60e-04 3_[+3(3.93e-05)]_62_[+4(5.09e-05)]_\ 39 chr2L:12022847-12022967 7.56e-01 120 chrX:15602549-15602669 1.06e-01 38_[+2(5.17e-05)]_74 chr3R:20545801-20545921 3.74e-02 120 chr2R:11192631-11192751 2.97e-02 120 chr2L:1735258-1735378 1.95e-02 120 chr3L:15689672-15689792 4.02e-03 5_[+1(1.92e-05)]_69_[+1(1.92e-05)]_\ 22_[+4(7.66e-05)] chr2R:12947104-12947224 6.58e-01 120 chr3R:16234278-16234398 5.42e-02 120 chrX:4038861-4038981 4.52e-01 120 chr3L:19961918-19962038 7.68e-01 120 chr3L:20124306-20124426 5.28e-02 120 chr2L:18506967-18507087 6.36e-01 120 chr3L:3931997-3932117 1.48e-02 56_[+4(2.27e-05)]_56 chr3R:23013612-23013732 1.36e-01 17_[+1(7.90e-05)]_95 chr2L:12493269-12493389 3.23e-01 120 chr2L:8171614-8171734 2.91e-04 92_[+2(5.17e-05)]_3_[+3(1.05e-05)]_\ 9 chrX:7708113-7708233 9.29e-01 120 chr3R:25870555-25870675 3.55e-02 120 chrX:16917581-16917701 2.20e-01 120 chr3L:11347629-11347749 4.88e-01 120 chr2R:22193030-22193150 1.53e-02 42_[+4(1.33e-05)]_70 chr3L:12796371-12796491 1.61e-02 39_[+1(7.90e-05)]_13_[+1(1.92e-05)]_\ 52 chrX:3282083-3282203 3.32e-03 25_[+3(2.68e-05)]_87 chr3L:11443312-11443432 6.74e-01 120 chr3L:11788261-11788381 6.41e-02 84_[+2(1.91e-05)]_28 chr2R:6686937-6687057 4.04e-01 39_[+1(7.90e-05)]_73 chr2R:16669889-16670009 2.89e-02 120 chr3R:31603871-31603991 1.16e-02 16_[+1(1.92e-05)]_96 chr3L:3932850-3932970 1.35e-01 120 chr3R:16981092-16981212 3.49e-01 120 chr3R:16209523-16209643 6.79e-02 120 chr2R:8120564-8120684 2.72e-02 17_[+1(7.90e-05)]_78_[+1(3.86e-05)]_\ 9 chr3R:4359743-4359863 1.97e-01 120 chr3L:19847104-19847224 1.26e-01 120 chr3R:20263084-20263204 3.68e-01 120 chrX:6253013-6253133 2.31e-01 120 chr3R:8356624-8356744 4.27e-02 120 chr2L:20840583-20840703 9.65e-02 101_[+3(3.93e-05)]_11 chr2L:307312-307432 6.00e-02 120 chr3L:16670350-16670470 1.66e-01 120 chr3R:10186213-10186333 1.67e-01 120 chr2R:10018950-10019070 7.69e-05 1_[+3(7.40e-06)]_82_[+2(5.17e-05)]_\ 21 chr3L:17948254-17948374 9.24e-01 120 chr2R:10400134-10400254 6.98e-01 120 chr2L:413069-413189 1.88e-01 120 chr3L:783027-783147 3.92e-01 120 chr3L:9020600-9020720 2.34e-01 120 chr3R:14479755-14479875 1.17e-01 120 chr2L:4829165-4829285 6.32e-04 5_[+5(4.75e-06)]_64_[+1(3.86e-05)]_\ 35 chr2R:21076902-21077022 1.92e-01 40_[+1(3.86e-05)]_72 chr3L:3925556-3925676 3.98e-01 120 chrX:19306712-19306832 2.14e-01 120 chr4:167690-167810 1.21e-01 120 chrX:15120321-15120441 8.76e-01 120 chr3R:11968355-11968475 9.82e-01 120 chr2R:16845506-16845626 2.06e-01 120 chr3R:5302180-5302300 1.01e-01 120 chr2R:22062406-22062526 2.43e-01 120 chr3R:19151987-19152107 5.40e-02 120 chr3R:30198973-30199093 1.13e-02 3_[+1(1.92e-05)]_109 chr3R:9529476-9529596 4.83e-01 120 chr3R:8524406-8524526 3.15e-01 120 chr2L:9389605-9389725 2.54e-01 120 chr3L:15150195-15150315 5.16e-02 120 chr3L:13912939-13913059 1.50e-01 120 chrX:18407441-18407561 7.47e-01 120 chrX:12749989-12750109 3.61e-03 120 chr3R:21584721-21584841 3.17e-02 120 chr3L:8074165-8074285 5.30e-02 21_[+1(7.90e-05)]_91 chr3R:8155911-8156031 1.00e-02 120 chr3L:3382046-3382166 9.78e-01 120 chr3L:18144748-18144868 5.62e-01 120 chr3L:2254450-2254570 2.51e-02 120 chrX:966948-967068 9.54e-01 120 chr3L:11278545-11278665 1.85e-04 50_[+3(3.07e-06)]_62 chr2R:24963315-24963435 7.20e-03 12_[+3(3.07e-06)]_100 chr3R:23284391-23284511 1.02e-03 29_[+1(3.86e-05)]_14_[+4(5.09e-05)]_\ 61 chr3R:7217312-7217432 2.90e-01 120 chr3L:8675137-8675257 7.95e-05 109_[+3(2.38e-05)]_3 chr3R:20273694-20273814 4.61e-02 120 chr3R:4453923-4454043 2.55e-01 120 chr3L:548985-549105 2.05e-01 120 chr2L:8697902-8698022 1.97e-01 120 chr3L:4025869-4025989 1.25e-02 62_[+5(3.42e-05)]_50 chr2L:1125545-1125665 7.59e-02 120 chr2L:7047926-7048046 1.80e-01 120 chr3L:17006228-17006348 8.05e-03 26_[+4(7.66e-05)]_55_[+1(7.90e-05)]_\ 23 chr3L:9696036-9696156 5.64e-02 120 chr3L:11351442-11351562 3.11e-01 120 chr3L:2469779-2469899 8.61e-02 22_[+2(1.91e-05)]_90 chr2R:24746040-24746160 4.46e-02 88_[+1(1.92e-05)]_24 chr2L:11845298-11845418 1.96e-01 85_[+1(7.90e-05)]_27 chr2L:856165-856285 4.36e-01 120 chr2R:18774919-18775039 5.76e-02 120 chrX:5664333-5664453 2.77e-01 120 chr2R:13723356-13723476 4.99e-02 50_[+2(3.81e-05)]_11_[+2(5.17e-05)]_\ 43 chr3L:15548940-15549060 7.64e-03 45_[+1(3.86e-05)]_52_[+2(1.91e-05)]_\ 7 chr3R:29757370-29757490 2.44e-02 16_[+1(3.86e-05)]_57_[+1(7.90e-05)]_\ 31 chr3L:11358799-11358919 6.01e-02 120 chr2R:17085655-17085775 1.49e-01 120 chr3L:6612777-6612897 2.14e-03 46_[+2(3.81e-05)]_66 chr3R:10099418-10099538 3.22e-01 120 chr2R:9550229-9550349 7.06e-02 23_[+4(7.66e-05)]_89 chrX:515842-515962 3.48e-03 83_[+1(1.92e-05)]_29 chr2R:24629562-24629682 6.23e-01 120 chr2L:18151893-18152013 3.88e-02 35_[+1(1.92e-05)]_30_[+1(3.86e-05)]_\ 39 chr3L:19071630-19071750 2.77e-01 120 chr3R:30802306-30802426 2.53e-02 120 chr2R:10304286-10304406 7.89e-03 120 chr2R:13336716-13336836 1.45e-01 120 chr3R:12716400-12716520 1.72e-02 120 chr2L:14399479-14399599 5.49e-01 120 chrX:8112861-8112981 2.59e-01 120 chr3L:17791634-17791754 3.30e-01 120 chr2R:21082660-21082780 4.35e-02 120 chr3L:11107581-11107701 1.28e-01 33_[+2(1.91e-05)]_79 chr2L:9943663-9943783 2.23e-01 120 chr2R:16225494-16225614 3.22e-02 120 chr2R:22387332-22387452 5.34e-02 120 chr3R:29891322-29891442 6.02e-04 53_[+2(5.17e-05)]_59 chr2L:18549636-18549756 5.22e-02 120 chr2R:24292868-24292988 9.49e-01 120 chr3L:9614616-9614736 6.50e-01 120 chr2R:22205656-22205776 3.79e-02 100_[+4(5.09e-05)]_12 chr3L:17001203-17001323 2.65e-02 4_[+3(7.40e-06)]_108 chr3L:16667645-16667765 2.56e-01 120 chr3L:16160058-16160178 9.71e-01 120 chr2L:17450231-17450351 6.51e-02 120 chrX:948247-948367 9.56e-01 120 chrX:13626039-13626159 5.63e-02 120 chrX:3869253-3869373 7.02e-03 36_[+4(9.01e-05)]_76 chr2R:15480307-15480427 2.66e-02 11_[+1(3.86e-05)]_101 chr3R:27986934-27987054 5.92e-05 96_[+5(4.75e-06)]_16 chrX:6592199-6592319 7.67e-04 14_[+3(2.38e-05)]_1_[+3(3.07e-06)]_\ 89 chr3L:17007379-17007499 8.77e-03 29_[+2(3.81e-05)]_83 chr2L:8084517-8084637 1.34e-02 8_[+4(7.66e-05)]_104 chr3L:10679835-10679955 3.90e-01 120 chr3R:19621079-19621199 9.25e-04 71_[+5(3.42e-05)]_15_[+1(7.90e-05)]_\ 18 chr2R:9546513-9546633 2.52e-02 43_[+5(9.38e-06)]_69 chr2L:12506971-12507091 1.10e-01 120 chr3R:28587177-28587297 1.69e-03 23_[+4(7.66e-05)]_89 chr2R:10013327-10013447 8.18e-01 120 chr2L:2168316-2168436 1.24e-01 120 chr2L:6085954-6086074 2.80e-01 120 chr2R:15931215-15931335 5.11e-03 72_[+3(7.40e-06)]_40 chr2L:20390103-20390223 1.54e-01 120 chr3L:11258492-11258612 5.98e-02 26_[+2(1.91e-05)]_86 chrX:12889270-12889390 9.73e-03 120 chr3L:3760497-3760617 4.39e-03 43_[+4(5.09e-05)]_58_[+3(2.38e-05)]_\ 3 chr2L:12046739-12046859 4.97e-01 120 chr3L:156707-156827 3.25e-02 120 chr3R:16655311-16655431 3.77e-01 120 chr2L:1043712-1043832 7.40e-02 71_[+5(4.75e-06)]_41 chr3R:13441899-13442019 3.87e-03 97_[+4(3.19e-05)]_15 chrX:16598525-16598645 2.63e-01 120 chr3R:4911191-4911311 1.90e-01 120 chr2R:17477288-17477408 4.79e-01 120 chr3R:5746795-5746915 3.64e-01 120 chrX:14727725-14727845 7.99e-01 120 chr2R:22669213-22669333 1.61e-01 120 chr2R:15846375-15846495 5.08e-02 76_[+4(5.09e-05)]_36 chr2L:9509810-9509930 2.96e-02 120 chr3L:12350459-12350579 1.72e-03 71_[+4(3.19e-05)]_41 chr3R:9430536-9430656 4.56e-01 120 chr2L:7973562-7973682 4.81e-02 120 chr2R:17272597-17272717 1.17e-01 120 chr2R:22789417-22789537 9.15e-01 120 chr2L:13882046-13882166 2.71e-01 103_[+1(7.90e-05)]_9 chr2R:21549134-21549254 1.01e-01 120 chr2L:20935509-20935629 7.20e-03 9_[+3(4.83e-05)]_103 chr3L:21055954-21056074 1.12e-03 [+2(1.91e-05)]_2_[+4(1.33e-05)]_102 chr2R:18605452-18605572 2.60e-03 86_[+2(5.17e-05)]_26 chr3R:21198136-21198256 2.31e-03 21_[+4(5.09e-05)]_36_[+1(1.92e-05)]_\ 47 chrX:20434703-20434823 6.83e-01 120 chr3L:4221390-4221510 6.53e-01 120 chr3R:13802331-13802451 3.35e-01 120 chr3L:20730992-20731112 9.16e-04 10_[+5(4.75e-06)]_102 chr3L:20406423-20406543 4.23e-01 120 chr3L:3078932-3079052 6.80e-02 120 chr2L:1837892-1838012 6.20e-01 120 chr2R:18435417-18435537 1.35e-02 2_[+3(1.05e-05)]_110 chr2L:2165729-2165849 6.54e-02 120 chr2L:5096968-5097088 9.76e-01 120 chr3L:7866818-7866938 9.06e-03 120 chr3L:8347481-8347601 2.39e-01 120 chr2L:6080508-6080628 1.21e-02 91_[+3(7.05e-05)]_21 chr3R:17526196-17526316 3.08e-01 120 chr3L:1151788-1151908 9.97e-01 120 chr3R:22631250-22631370 5.20e-01 120 chrX:18082847-18082967 4.67e-01 120 chr3L:2573105-2573225 8.98e-03 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************