******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:13305656-13305776 1.0000 120 chrX:335013-335133 1.0000 120 chr3R:8155912-8156032 1.0000 120 chr2L:20944429-20944549 1.0000 120 chrX:362239-362359 1.0000 120 chr2L:6540121-6540241 1.0000 120 chr2L:470017-470137 1.0000 120 chr2L:5304794-5304914 1.0000 120 chr2L:14212790-14212910 1.0000 120 chr3R:16907943-16908063 1.0000 120 chr2R:15919837-15919957 1.0000 120 chr3R:6229187-6229307 1.0000 120 chr2L:1913080-1913200 1.0000 120 chrX:13645205-13645325 1.0000 120 chr3L:7522015-7522135 1.0000 120 chr3R:14386236-14386356 1.0000 120 chrX:5696189-5696309 1.0000 120 chr2L:6540320-6540440 1.0000 120 chrX:17799277-17799397 1.0000 120 chr3L:20915223-20915343 1.0000 120 chr3L:16056348-16056468 1.0000 120 chr3R:26040039-26040159 1.0000 120 chr3L:21462944-21463064 1.0000 120 chr3L:17993424-17993544 1.0000 120 chr3L:9032990-9033110 1.0000 120 chr2L:6595203-6595323 1.0000 120 chr3R:5327993-5328113 1.0000 120 chr2L:5338744-5338864 1.0000 120 chr3R:26549923-26550043 1.0000 120 chr2L:18896967-18897087 1.0000 120 chrX:17471690-17471810 1.0000 120 chr3L:19670617-19670737 1.0000 120 chr2R:22384550-22384670 1.0000 120 chr3L:2811578-2811698 1.0000 120 chr3L:17052548-17052668 1.0000 120 chrX:12547108-12547228 1.0000 120 chr3L:1175289-1175409 1.0000 120 chr2R:14971220-14971340 1.0000 120 chr3L:11516402-11516522 1.0000 120 chrX:3967721-3967841 1.0000 120 chrX:17112238-17112358 1.0000 120 chr2L:20936557-20936677 1.0000 120 chr3L:14101494-14101614 1.0000 120 chr3L:15636498-15636618 1.0000 120 chrX:9048501-9048621 1.0000 120 chr2R:22666737-22666857 1.0000 120 chr2L:6818475-6818595 1.0000 120 chr3R:16987258-16987378 1.0000 120 chr2L:14457585-14457705 1.0000 120 chr2R:14006487-14006607 1.0000 120 chr3R:13815818-13815938 1.0000 120 chr3L:12841511-12841631 1.0000 120 chr3L:2862305-2862425 1.0000 120 chr2L:10497567-10497687 1.0000 120 chr3L:11491954-11492074 1.0000 120 chr3L:14625515-14625635 1.0000 120 chr3R:25519918-25520038 1.0000 120 chr2L:20327539-20327659 1.0000 120 chr2L:16358094-16358214 1.0000 120 chr3L:3873207-3873327 1.0000 120 chr3L:21463146-21463266 1.0000 120 chr2L:16721441-16721561 1.0000 120 chr3L:17033426-17033546 1.0000 120 chr3L:7961353-7961473 1.0000 120 chr2R:22420624-22420744 1.0000 120 chr3L:9677979-9678099 1.0000 120 chr4:1093704-1093824 1.0000 120 chr2R:19138068-19138188 1.0000 120 chr3L:5017685-5017805 1.0000 120 chrX:17357635-17357755 1.0000 120 chr2R:10212538-10212658 1.0000 120 chrX:382949-383069 1.0000 120 chr3L:17656865-17656985 1.0000 120 chr3R:30734708-30734828 1.0000 120 chr3L:15693159-15693279 1.0000 120 chr2R:7756404-7756524 1.0000 120 chr3L:10391086-10391206 1.0000 120 chr3R:13319979-13320099 1.0000 120 chr3L:18227466-18227586 1.0000 120 chr3L:5992430-5992550 1.0000 120 chr3L:17981238-17981358 1.0000 120 chr3L:22864506-22864626 1.0000 120 chr2R:7951891-7952011 1.0000 120 chr2L:9498977-9499097 1.0000 120 chr3R:21594435-21594555 1.0000 120 chr2L:4055520-4055640 1.0000 120 chr2L:3397741-3397861 1.0000 120 chr2L:19370234-19370354 1.0000 120 chr2L:889958-890078 1.0000 120 chr3R:26900107-26900227 1.0000 120 chr3L:16640608-16640728 1.0000 120 chr2R:13475015-13475135 1.0000 120 chrX:20644148-20644268 1.0000 120 chr2L:12465844-12465964 1.0000 120 chr2L:2906284-2906404 1.0000 120 chrX:3740458-3740578 1.0000 120 chr2R:24882512-24882632 1.0000 120 chr3R:9889111-9889231 1.0000 120 chrX:4609884-4610004 1.0000 120 chr3R:13448451-13448571 1.0000 120 chr2R:15351311-15351431 1.0000 120 chr3L:11336521-11336641 1.0000 120 chr2L:14690999-14691119 1.0000 120 chr2L:14307677-14307797 1.0000 120 chr3L:517270-517390 1.0000 120 chrX:17581983-17582103 1.0000 120 chr2L:13876834-13876954 1.0000 120 chr2L:1738125-1738245 1.0000 120 chr3R:28552376-28552496 1.0000 120 chr2R:12008946-12009066 1.0000 120 chr3R:21263323-21263443 1.0000 120 chr3R:18785897-18786017 1.0000 120 chr3L:3449795-3449915 1.0000 120 chrX:15618101-15618221 1.0000 120 chr2L:1094826-1094946 1.0000 120 chr3R:10354217-10354337 1.0000 120 chr3L:9042786-9042906 1.0000 120 chr2L:7495283-7495403 1.0000 120 chr3L:17937437-17937557 1.0000 120 chrX:7579913-7580033 1.0000 120 chr3R:21834392-21834512 1.0000 120 chr3R:8197249-8197369 1.0000 120 chr3R:15677784-15677904 1.0000 120 chr3R:31482284-31482404 1.0000 120 chr3R:14351545-14351665 1.0000 120 chr2L:19317981-19318101 1.0000 120 chr2R:7694263-7694383 1.0000 120 chr2R:9681914-9682034 1.0000 120 chr3R:29265218-29265338 1.0000 120 chr2L:20335059-20335179 1.0000 120 chr3R:10641401-10641521 1.0000 120 chr2R:17870015-17870135 1.0000 120 chr3R:8964103-8964223 1.0000 120 chr2L:14245600-14245720 1.0000 120 chr2R:16091899-16092019 1.0000 120 chr3L:11273757-11273877 1.0000 120 chr2R:22529804-22529924 1.0000 120 chr3R:19014933-19015053 1.0000 120 chr3L:13403247-13403367 1.0000 120 chr3R:14569821-14569941 1.0000 120 chr3L:15794402-15794522 1.0000 120 chr3R:6241380-6241500 1.0000 120 chr3L:1690832-1690952 1.0000 120 chr2R:19874679-19874799 1.0000 120 chr3R:18438307-18438427 1.0000 120 chr2L:10505036-10505156 1.0000 120 chr3L:10337652-10337772 1.0000 120 chr3L:16060929-16061049 1.0000 120 chr2R:16610062-16610182 1.0000 120 chr2L:8461928-8462048 1.0000 120 chr2L:18496935-18497055 1.0000 120 chr3R:25885285-25885405 1.0000 120 chr3L:20186454-20186574 1.0000 120 chr3R:29541443-29541563 1.0000 120 chrX:17397198-17397318 1.0000 120 chr3R:24768121-24768241 1.0000 120 chr2L:838164-838284 1.0000 120 chrX:6643052-6643172 1.0000 120 chrX:18525077-18525197 1.0000 120 chr3L:19557499-19557619 1.0000 120 chr2L:20464440-20464560 1.0000 120 chr3R:9159951-9160071 1.0000 120 chr3R:17394783-17394903 1.0000 120 chr3R:13549746-13549866 1.0000 120 chrX:17782145-17782265 1.0000 120 chr3R:23872922-23873042 1.0000 120 chr2R:11541199-11541319 1.0000 120 chr3R:19182949-19183069 1.0000 120 chr2L:1916562-1916682 1.0000 120 chr3R:13907845-13907965 1.0000 120 chr2L:7566754-7566874 1.0000 120 chr2L:18566695-18566815 1.0000 120 chr3R:17655165-17655285 1.0000 120 chr3R:6425801-6425921 1.0000 120 chr2R:22540018-22540138 1.0000 120 chr2L:827660-827780 1.0000 120 chr2L:8080813-8080933 1.0000 120 chr3L:4615216-4615336 1.0000 120 chr2R:19420570-19420690 1.0000 120 chr3R:22878549-22878669 1.0000 120 chr3R:15650463-15650583 1.0000 120 chr3L:2468496-2468616 1.0000 120 chr2R:19860415-19860535 1.0000 120 chrX:18238013-18238133 1.0000 120 chr3L:15199444-15199564 1.0000 120 chr3R:6791213-6791333 1.0000 120 chr3L:6817045-6817165 1.0000 120 chr2L:1427885-1428005 1.0000 120 chr3L:14328478-14328598 1.0000 120 chr2L:7519089-7519209 1.0000 120 chr2L:18625521-18625641 1.0000 120 chrX:1387332-1387452 1.0000 120 chr3R:14285138-14285258 1.0000 120 chrX:4498394-4498514 1.0000 120 chr2L:3856441-3856561 1.0000 120 chr3L:16760382-16760502 1.0000 120 chr3R:31704699-31704819 1.0000 120 chr2L:16476561-16476681 1.0000 120 chr2L:20638688-20638808 1.0000 120 chr2L:974233-974353 1.0000 120 chr2R:15835585-15835705 1.0000 120 chr2R:18609032-18609152 1.0000 120 chrX:2396644-2396764 1.0000 120 chr3L:2159026-2159146 1.0000 120 chr2R:7167966-7168086 1.0000 120 chr3L:18274274-18274394 1.0000 120 chr3L:3978061-3978181 1.0000 120 chr2L:21619201-21619321 1.0000 120 chr3R:31309411-31309531 1.0000 120 chr3R:6182644-6182764 1.0000 120 chr3R:4846917-4847037 1.0000 120 chrX:3396942-3397062 1.0000 120 chr2R:21048299-21048419 1.0000 120 chrX:4581859-4581979 1.0000 120 chr3L:18771762-18771882 1.0000 120 chr3R:18988135-18988255 1.0000 120 chr3L:8925763-8925883 1.0000 120 chr3L:10951144-10951264 1.0000 120 chr3L:11552073-11552193 1.0000 120 chr3L:295153-295273 1.0000 120 chr2L:1070486-1070606 1.0000 120 chr2R:14803429-14803549 1.0000 120 chr2L:18328916-18329036 1.0000 120 chr2L:6088868-6088988 1.0000 120 chr3L:19191934-19192054 1.0000 120 chrX:3455509-3455629 1.0000 120 chr2L:8554471-8554591 1.0000 120 chr3R:15652763-15652883 1.0000 120 chr3R:26796658-26796778 1.0000 120 chr2L:16869093-16869213 1.0000 120 chr2L:3851442-3851562 1.0000 120 chr2L:21218893-21219013 1.0000 120 chr2L:16476761-16476881 1.0000 120 chrX:13226615-13226735 1.0000 120 chr2L:19155128-19155248 1.0000 120 chr3L:6885832-6885952 1.0000 120 chrX:7162605-7162725 1.0000 120 chrX:7571314-7571434 1.0000 120 chr2R:12727696-12727816 1.0000 120 chrX:18775013-18775133 1.0000 120 chr3R:17828806-17828926 1.0000 120 chr2R:13924332-13924452 1.0000 120 chr3R:22260353-22260473 1.0000 120 chr3L:20922558-20922678 1.0000 120 chr3R:23803837-23803957 1.0000 120 chr3R:13796230-13796350 1.0000 120 chrX:19224935-19225055 1.0000 120 chr3L:10767162-10767282 1.0000 120 chrX:3358004-3358124 1.0000 120 chr2R:12742616-12742736 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.329 C 0.171 G 0.169 T 0.331 Background letter frequencies (from file dataset with add-one prior applied): A 0.329 C 0.171 G 0.169 T 0.331 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGSCGGC MEME-1 width = 8 sites = 14 llr = 148 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::31: pos.-specific C 37:49::a probability G 7:a6179: matrix T :3:::::: bits 2.6 * * 2.3 * * 2.1 * * * 1.8 * * * ** Relative 1.5 ******** Entropy 1.3 ******** (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCGGC consensus CT C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17937437-17937557 80 6.89e-07 TTCATTTCAA GCGGCGGC TCTACCAtct chr2L:19370234-19370354 24 6.89e-07 TGTGAAAAGG GCGGCGGC GGGGTGACGA chr3L:20922558-20922678 98 5.47e-06 TTGTTGTTTA CCGCCGGC CACGTTCGAA chr2R:7167966-7168086 71 5.47e-06 TTGGTCTTGG CCGCCGGC GATGACTGAG chr3R:18438307-18438427 2 5.47e-06 G GCGGCAGC GCAGTTGGCG chr2L:1913080-1913200 84 5.47e-06 GTCAACATCC GCGGCAGC TGTTGAATTT chr3R:14285138-14285258 108 8.17e-06 AGTTTCAACA GCGCCAGC AACAA chrX:17397198-17397318 33 8.17e-06 ATTCACCACG GTGCCGGC AACATGGCGC chr2L:10505036-10505156 46 8.17e-06 TGGAACCACA GTGCCGGC CACACAAATA chrX:18775013-18775133 24 1.22e-05 AAAGCCAAAT GCGGCGAC ATCGTCGCAG chr2L:19155128-19155248 31 1.22e-05 AGGGAAACAT CTGGCGGC Agtagttgtt chr3R:21263323-21263443 37 1.22e-05 TGCCTACTTG CCGGCAGC TCAAATAAAA chr3L:1690832-1690952 19 1.29e-05 CCACTCGAGT GCGGGGGC AAGGTGCTAA chr2L:18328916-18329036 3 3.42e-05 AT GTGGCGAC AATTGTGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17937437-17937557 6.9e-07 79_[+1]_33 chr2L:19370234-19370354 6.9e-07 23_[+1]_89 chr3L:20922558-20922678 5.5e-06 97_[+1]_15 chr2R:7167966-7168086 5.5e-06 70_[+1]_42 chr3R:18438307-18438427 5.5e-06 1_[+1]_111 chr2L:1913080-1913200 5.5e-06 83_[+1]_29 chr3R:14285138-14285258 8.2e-06 107_[+1]_5 chrX:17397198-17397318 8.2e-06 32_[+1]_80 chr2L:10505036-10505156 8.2e-06 45_[+1]_67 chrX:18775013-18775133 1.2e-05 23_[+1]_89 chr2L:19155128-19155248 1.2e-05 30_[+1]_82 chr3R:21263323-21263443 1.2e-05 36_[+1]_76 chr3L:1690832-1690952 1.3e-05 18_[+1]_94 chr2L:18328916-18329036 3.4e-05 2_[+1]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGSCGGC width=8 seqs=14 chr3L:17937437-17937557 ( 80) GCGGCGGC 1 chr2L:19370234-19370354 ( 24) GCGGCGGC 1 chr3L:20922558-20922678 ( 98) CCGCCGGC 1 chr2R:7167966-7168086 ( 71) CCGCCGGC 1 chr3R:18438307-18438427 ( 2) GCGGCAGC 1 chr2L:1913080-1913200 ( 84) GCGGCAGC 1 chr3R:14285138-14285258 ( 108) GCGCCAGC 1 chrX:17397198-17397318 ( 33) GTGCCGGC 1 chr2L:10505036-10505156 ( 46) GTGCCGGC 1 chrX:18775013-18775133 ( 24) GCGGCGAC 1 chr2L:19155128-19155248 ( 31) CTGGCGGC 1 chr3R:21263323-21263443 ( 37) CCGGCAGC 1 chr3L:1690832-1690952 ( 19) GCGGGGGC 1 chr2L:18328916-18329036 ( 3) GTGGCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 3.1e-001 -1045 74 208 -1045 -1045 206 -1045 -21 -1045 -1045 256 -1045 -1045 106 193 -1045 -1045 244 -124 -1045 -20 -1045 208 -1045 -120 -1045 234 -1045 -1045 255 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.1e-001 0.000000 0.285714 0.714286 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.642857 0.000000 0.000000 0.928571 0.071429 0.000000 0.285714 0.000000 0.714286 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCGGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CT]G[GC]C[GA]GC -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGCGGG MEME-2 width = 8 sites = 2 llr = 28 E-value = 5.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::a::: probability G :aaa:aaa matrix T :::::::: bits 2.6 ******** 2.3 ******** 2.1 ******** 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (20.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGGCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20638688-20638808 16 6.81e-07 CCAGTGCTTG CGGGCGGG CGCTCTCAAA chrX:362239-362359 72 6.81e-07 TTCCCAGTCT CGGGCGGG GCATTTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20638688-20638808 6.8e-07 15_[+2]_97 chrX:362239-362359 6.8e-07 71_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGCGGG width=8 seqs=2 chr2L:20638688-20638808 ( 16) CGGGCGGG 1 chrX:362239-362359 ( 72) CGGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.7e+003 -765 254 -765 -765 -765 -765 256 -765 -765 -765 256 -765 -765 -765 256 -765 -765 254 -765 -765 -765 -765 256 -765 -765 -765 256 -765 -765 -765 256 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGGG MEME-2 regular expression -------------------------------------------------------------------------------- CGGGCGGG -------------------------------------------------------------------------------- Time 14.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCAMG MEME-3 width = 8 sites = 4 llr = 50 E-value = 8.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a5: pos.-specific C ::::a:5: probability G aaaa:::a matrix T :::::::: bits 2.6 ***** * 2.3 ***** * 2.1 ***** * 1.8 ***** * Relative 1.5 ****** * Entropy 1.3 ****** * (18.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGCAAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8925763-8925883 18 1.33e-06 TGTTAGGCAC GGGGCACG TACATACAAA chr3L:7961353-7961473 47 1.33e-06 CAACAGCCAT GGGGCACG TTCGTCATTT chr3R:26796658-26796778 28 3.88e-06 ACCGATTCGA GGGGCAAG AGGAGGGGGA chr2L:16721441-16721561 46 3.88e-06 TTTACATAAC GGGGCAAG GGGACAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8925763-8925883 1.3e-06 17_[+3]_95 chr3L:7961353-7961473 1.3e-06 46_[+3]_66 chr3R:26796658-26796778 3.9e-06 27_[+3]_85 chr2L:16721441-16721561 3.9e-06 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCAMG width=8 seqs=4 chr3L:8925763-8925883 ( 18) GGGGCACG 1 chr3L:7961353-7961473 ( 47) GGGGCACG 1 chr3R:26796658-26796778 ( 28) GGGGCAAG 1 chr2L:16721441-16721561 ( 46) GGGGCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 8.5e+003 -865 -865 256 -865 -865 -865 256 -865 -865 -865 256 -865 -865 -865 256 -865 -865 254 -865 -865 160 -865 -865 -865 60 154 -865 -865 -865 -865 256 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 8.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAMG MEME-3 regular expression -------------------------------------------------------------------------------- GGGGCA[AC]G -------------------------------------------------------------------------------- Time 20.45 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCWGCTG MEME-4 width = 8 sites = 15 llr = 145 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::5:::: pos.-specific C ::81:a:1 probability G :a:1a::9 matrix T 7:23::a: bits 2.6 * ** 2.3 * ** * 2.1 * ** * 1.8 * ** * Relative 1.5 ** **** Entropy 1.3 ** **** (14.0 bits) 1.0 ** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel TGCAGCTG consensus A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21048299-21048419 54 5.09e-06 CGTTGGCAGC TGCAGCTG CGCAGGTAGC chr3R:25885285-25885405 112 5.09e-06 ATTGAAGCGG TGCAGCTG A chr3R:10354217-10354337 66 5.09e-06 ACCCTCGAGT TGCAGCTG CCTGAGTCCG chr3R:26040039-26040159 47 5.09e-06 CCTACGAAGT TGCAGCTG TTCCTTGTGA chr2L:12465844-12465964 65 1.53e-05 TAAAAGTCGA AGCAGCTG TCTGTCAATA chrX:382949-383069 80 1.53e-05 TATGTCAGCG AGCAGCTG ACGTTCTGCC chr3R:18988135-18988255 32 2.04e-05 GAAAGATACA AGCTGCTG GTATCCAGAG chr2L:18496935-18497055 33 2.04e-05 GTGTGTTTTA AGCTGCTG CTAGGAACGA chr3L:21462944-21463064 16 2.04e-05 CTTGTTTCAA AGCTGCTG AAAAACTCCC chr2L:16476561-16476681 24 2.56e-05 ATTCCATGTT TGCCGCTG GTACACAGGT chr3L:11336521-11336641 29 2.56e-05 AAATTTAATA TGCGGCTG AAAAAAGCAT chr3R:31482284-31482404 38 3.55e-05 AGTAATAAGC TGTAGCTG AGACTCTGCG chr2R:22529804-22529924 103 5.06e-05 CGTCTGTTTC TGTTGCTG TTTCGCAGCA chr3L:17052548-17052668 31 5.06e-05 TTTCCTTATC TGTTGCTG AAACGACATG chr3L:6817045-6817165 6 6.55e-05 GCGGT TGCAGCTC AACTCGCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21048299-21048419 5.1e-06 53_[+4]_59 chr3R:25885285-25885405 5.1e-06 111_[+4]_1 chr3R:10354217-10354337 5.1e-06 65_[+4]_47 chr3R:26040039-26040159 5.1e-06 46_[+4]_66 chr2L:12465844-12465964 1.5e-05 64_[+4]_48 chrX:382949-383069 1.5e-05 79_[+4]_33 chr3R:18988135-18988255 2e-05 31_[+4]_81 chr2L:18496935-18497055 2e-05 32_[+4]_80 chr3L:21462944-21463064 2e-05 15_[+4]_97 chr2L:16476561-16476681 2.6e-05 23_[+4]_89 chr3L:11336521-11336641 2.6e-05 28_[+4]_84 chr3R:31482284-31482404 3.5e-05 37_[+4]_75 chr2R:22529804-22529924 5.1e-05 102_[+4]_10 chr3L:17052548-17052668 5.1e-05 30_[+4]_82 chr3L:6817045-6817165 6.6e-05 5_[+4]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCWGCTG width=8 seqs=15 chr2R:21048299-21048419 ( 54) TGCAGCTG 1 chr3R:25885285-25885405 ( 112) TGCAGCTG 1 chr3R:10354217-10354337 ( 66) TGCAGCTG 1 chr3R:26040039-26040159 ( 47) TGCAGCTG 1 chr2L:12465844-12465964 ( 65) AGCAGCTG 1 chrX:382949-383069 ( 80) AGCAGCTG 1 chr3R:18988135-18988255 ( 32) AGCTGCTG 1 chr2L:18496935-18497055 ( 33) AGCTGCTG 1 chr3L:21462944-21463064 ( 16) AGCTGCTG 1 chr2L:16476561-16476681 ( 24) TGCCGCTG 1 chr3L:11336521-11336641 ( 29) TGCGGCTG 1 chr3R:31482284-31482404 ( 38) TGTAGCTG 1 chr2R:22529804-22529924 ( 103) TGTTGCTG 1 chr3L:17052548-17052668 ( 31) TGTTGCTG 1 chr3L:6817045-6817165 ( 6) TGCAGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 2.5e+004 2 -1055 -1055 101 -1055 -1055 256 -1055 -1055 222 -1055 -72 70 -136 -134 1 -1055 -1055 256 -1055 -1055 255 -1055 -1055 -1055 -1055 -1055 160 -1055 -136 246 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.5e+004 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.533333 0.066667 0.066667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.066667 0.933333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCWGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [TA]G[CT][AT]GCTG -------------------------------------------------------------------------------- Time 26.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCRWGG MEME-5 width = 8 sites = 11 llr = 111 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::54:: pos.-specific C 2:a81::1 probability G 8a:252a9 matrix T :::::5:: bits 2.6 ** * 2.3 ** * 2.1 ** ** 1.8 **** ** Relative 1.5 **** ** Entropy 1.3 **** ** (14.6 bits) 1.0 **** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GGCCATGG consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7162605-7162725 99 3.34e-06 GCCACCTGTT GGCCGGGG CAGTTTCAGC chr2R:12008946-12009066 18 3.34e-06 ACTTTTCGCT GGCCGAGG ATGGAGCATA chrX:9048501-9048621 111 5.94e-06 GATTGCCTTA GGCCATGG TT chr3R:24768121-24768241 68 9.85e-06 ttcttctcct GGCCAAGG AAAGTGACGA chr3L:9042786-9042906 16 9.85e-06 CATTATTTTT GGCCAAGG CTTAGAATAT chrX:17397198-17397318 12 1.39e-05 TATTTCACCA CGCCGTGG TGGATTCACC chr2R:19874679-19874799 110 1.39e-05 TGCCAAGAGA GGCCCTGG CCA chr3L:5992430-5992550 21 1.99e-05 CAAATGTAAA CGCCGAGG AAAAGCAACG chr3R:6182644-6182764 41 2.25e-05 GCGTGTGAGT GGCGATGG GCTTTAGTGT chr2L:16476561-16476681 67 2.25e-05 AAAAGACAGC GGCGATGG GCAAATAAAC chr3R:26796658-26796778 113 3.63e-05 ACAACAACAA GGCCGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7162605-7162725 3.3e-06 98_[+5]_14 chr2R:12008946-12009066 3.3e-06 17_[+5]_95 chrX:9048501-9048621 5.9e-06 110_[+5]_2 chr3R:24768121-24768241 9.8e-06 67_[+5]_45 chr3L:9042786-9042906 9.8e-06 15_[+5]_97 chrX:17397198-17397318 1.4e-05 11_[+5]_101 chr2R:19874679-19874799 1.4e-05 109_[+5]_3 chr3L:5992430-5992550 2e-05 20_[+5]_92 chr3R:6182644-6182764 2.2e-05 40_[+5]_72 chr2L:16476561-16476681 2.2e-05 66_[+5]_46 chr3R:26796658-26796778 3.6e-05 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCRWGG width=8 seqs=11 chrX:7162605-7162725 ( 99) GGCCGGGG 1 chr2R:12008946-12009066 ( 18) GGCCGAGG 1 chrX:9048501-9048621 ( 111) GGCCATGG 1 chr3R:24768121-24768241 ( 68) GGCCAAGG 1 chr3L:9042786-9042906 ( 16) GGCCAAGG 1 chrX:17397198-17397318 ( 12) CGCCGTGG 1 chr2R:19874679-19874799 ( 110) GGCCCTGG 1 chr3L:5992430-5992550 ( 21) CGCCGAGG 1 chr3R:6182644-6182764 ( 41) GGCGATGG 1 chr2L:16476561-16476681 ( 67) GGCGATGG 1 chr3R:26796658-26796778 ( 113) GGCCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.9e+004 -1010 9 227 -1010 -1010 -1010 256 -1010 -1010 255 -1010 -1010 -1010 226 10 -1010 47 -91 143 -1010 14 -1010 10 46 -1010 -1010 256 -1010 -1010 -91 242 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.9e+004 0.000000 0.181818 0.818182 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.454545 0.090909 0.454545 0.000000 0.363636 0.000000 0.181818 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCRWGG MEME-5 regular expression -------------------------------------------------------------------------------- GGCC[AG][TA]GG -------------------------------------------------------------------------------- Time 32.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13305656-13305776 1.44e-02 73_[+4(9.58e-05)]_39 chrX:335013-335133 9.38e-01 120 chr3R:8155912-8156032 1.72e-01 120 chr2L:20944429-20944549 8.40e-01 120 chrX:362239-362359 5.42e-06 71_[+2(6.81e-07)]_41 chr2L:6540121-6540241 2.39e-01 120 chr2L:470017-470137 1.52e-01 120 chr2L:5304794-5304914 5.88e-01 120 chr2L:14212790-14212910 1.87e-01 120 chr3R:16907943-16908063 1.00e+00 120 chr2R:15919837-15919957 5.98e-01 120 chr3R:6229187-6229307 7.33e-01 120 chr2L:1913080-1913200 2.52e-03 83_[+1(5.47e-06)]_29 chrX:13645205-13645325 4.55e-01 105_[+1(8.09e-05)]_7 chr3L:7522015-7522135 9.99e-01 120 chr3R:14386236-14386356 9.98e-01 120 chrX:5696189-5696309 4.22e-01 120 chr2L:6540320-6540440 5.37e-01 120 chrX:17799277-17799397 8.18e-01 120 chr3L:20915223-20915343 2.41e-01 120 chr3L:16056348-16056468 2.23e-01 120 chr3R:26040039-26040159 7.73e-06 46_[+4(5.09e-06)]_37_[+1(8.35e-05)]_\ 21 chr3L:21462944-21463064 2.50e-01 15_[+4(2.04e-05)]_97 chr3L:17993424-17993544 1.31e-01 120 chr3L:9032990-9033110 9.67e-01 120 chr2L:6595203-6595323 4.92e-01 120 chr3R:5327993-5328113 3.51e-01 120 chr2L:5338744-5338864 6.76e-02 120 chr3R:26549923-26550043 1.10e-01 120 chr2L:18896967-18897087 9.92e-01 120 chrX:17471690-17471810 9.35e-01 120 chr3L:19670617-19670737 5.04e-01 120 chr2R:22384550-22384670 3.31e-01 120 chr3L:2811578-2811698 3.70e-01 120 chr3L:17052548-17052668 2.96e-01 30_[+4(5.06e-05)]_82 chrX:12547108-12547228 1.10e-03 58_[+2(2.74e-05)]_54 chr3L:1175289-1175409 1.92e-01 120 chr2R:14971220-14971340 9.85e-01 120 chr3L:11516402-11516522 3.37e-01 120 chrX:3967721-3967841 9.35e-01 120 chrX:17112238-17112358 2.56e-01 120 chr2L:20936557-20936677 5.95e-01 120 chr3L:14101494-14101614 9.03e-01 120 chr3L:15636498-15636618 3.88e-01 120 chrX:9048501-9048621 1.34e-02 110_[+5(5.94e-06)]_2 chr2R:22666737-22666857 9.42e-01 120 chr2L:6818475-6818595 3.40e-02 120 chr3R:16987258-16987378 3.84e-01 120 chr2L:14457585-14457705 7.11e-01 120 chr2R:14006487-14006607 9.93e-01 120 chr3R:13815818-13815938 9.93e-01 120 chr3L:12841511-12841631 4.68e-01 120 chr3L:2862305-2862425 2.95e-01 120 chr2L:10497567-10497687 4.33e-01 120 chr3L:11491954-11492074 9.99e-01 120 chr3L:14625515-14625635 4.76e-01 120 chr3R:25519918-25520038 9.95e-01 120 chr2L:20327539-20327659 3.23e-01 120 chr2L:16358094-16358214 4.81e-01 120 chr3L:3873207-3873327 9.93e-01 120 chr3L:21463146-21463266 2.76e-02 120 chr2L:16721441-16721561 1.30e-03 45_[+3(3.88e-06)]_67 chr3L:17033426-17033546 1.99e-02 120 chr3L:7961353-7961473 1.90e-03 46_[+3(1.33e-06)]_66 chr2R:22420624-22420744 9.96e-01 120 chr3L:9677979-9678099 8.42e-01 120 chr4:1093704-1093824 6.88e-01 120 chr2R:19138068-19138188 2.37e-01 120 chr3L:5017685-5017805 9.84e-01 120 chrX:17357635-17357755 4.25e-01 120 chr2R:10212538-10212658 6.76e-01 120 chrX:382949-383069 1.07e-02 79_[+4(1.53e-05)]_33 chr3L:17656865-17656985 2.03e-02 120 chr3R:30734708-30734828 6.57e-01 120 chr3L:15693159-15693279 5.12e-01 120 chr2R:7756404-7756524 9.84e-01 120 chr3L:10391086-10391206 9.89e-01 120 chr3R:13319979-13320099 2.91e-01 120 chr3L:18227466-18227586 9.76e-01 120 chr3L:5992430-5992550 1.13e-02 20_[+5(1.99e-05)]_92 chr3L:17981238-17981358 9.25e-01 120 chr3L:22864506-22864626 4.06e-02 120 chr2R:7951891-7952011 6.11e-03 28_[+5(5.69e-05)]_84 chr2L:9498977-9499097 8.66e-01 120 chr3R:21594435-21594555 8.09e-01 120 chr2L:4055520-4055640 9.30e-01 120 chr2L:3397741-3397861 1.69e-01 120 chr2L:19370234-19370354 8.72e-07 23_[+1(6.89e-07)]_39_[+3(1.57e-05)]_\ 42 chr2L:889958-890078 9.65e-01 120 chr3R:26900107-26900227 1.17e-01 120 chr3L:16640608-16640728 1.03e-01 120 chr2R:13475015-13475135 9.98e-01 120 chrX:20644148-20644268 9.09e-01 120 chr2L:12465844-12465964 1.16e-02 64_[+4(1.53e-05)]_48 chr2L:2906284-2906404 1.64e-01 120 chrX:3740458-3740578 1.82e-01 120 chr2R:24882512-24882632 8.58e-01 120 chr3R:9889111-9889231 3.38e-02 120 chrX:4609884-4610004 3.40e-02 98_[+4(9.58e-05)]_14 chr3R:13448451-13448571 9.98e-01 120 chr2R:15351311-15351431 9.74e-01 120 chr3L:11336521-11336641 7.26e-02 28_[+4(2.56e-05)]_84 chr2L:14690999-14691119 1.00e+00 120 chr2L:14307677-14307797 8.37e-01 120 chr3L:517270-517390 5.56e-01 120 chrX:17581983-17582103 8.74e-01 120 chr2L:13876834-13876954 4.23e-01 120 chr2L:1738125-1738245 3.48e-01 120 chr3R:28552376-28552496 5.26e-02 120 chr2R:12008946-12009066 6.08e-03 17_[+5(3.34e-06)]_95 chr3R:21263323-21263443 3.09e-02 36_[+1(1.22e-05)]_76 chr3R:18785897-18786017 2.31e-01 120 chr3L:3449795-3449915 7.37e-01 120 chrX:15618101-15618221 3.23e-01 120 chr2L:1094826-1094946 2.40e-01 120 chr3R:10354217-10354337 1.96e-02 65_[+4(5.09e-06)]_47 chr3L:9042786-9042906 1.68e-02 15_[+5(9.85e-06)]_97 chr2L:7495283-7495403 7.79e-01 120 chr3L:17937437-17937557 9.22e-04 79_[+1(6.89e-07)]_33 chrX:7579913-7580033 7.94e-01 120 chr3R:21834392-21834512 9.99e-01 120 chr3R:8197249-8197369 1.00e-01 120 chr3R:15677784-15677904 7.07e-03 120 chr3R:31482284-31482404 1.66e-01 37_[+4(3.55e-05)]_75 chr3R:14351545-14351665 9.95e-01 120 chr2L:19317981-19318101 8.74e-01 120 chr2R:7694263-7694383 8.54e-02 120 chr2R:9681914-9682034 9.94e-01 120 chr3R:29265218-29265338 8.29e-01 120 chr2L:20335059-20335179 9.61e-01 120 chr3R:10641401-10641521 1.00e+00 120 chr2R:17870015-17870135 3.31e-01 120 chr3R:8964103-8964223 8.91e-01 120 chr2L:14245600-14245720 9.98e-01 120 chr2R:16091899-16092019 9.85e-01 120 chr3L:11273757-11273877 6.12e-01 120 chr2R:22529804-22529924 2.05e-01 102_[+4(5.06e-05)]_10 chr3R:19014933-19015053 9.16e-01 120 chr3L:13403247-13403367 8.49e-01 120 chr3R:14569821-14569941 9.48e-01 120 chr3L:15794402-15794522 9.82e-01 120 chr3R:6241380-6241500 8.23e-01 120 chr3L:1690832-1690952 2.25e-06 21_[+3(3.88e-06)]_91 chr2R:19874679-19874799 2.19e-02 109_[+5(1.39e-05)]_3 chr3R:18438307-18438427 1.44e-03 1_[+1(5.47e-06)]_111 chr2L:10505036-10505156 1.30e-03 45_[+1(8.17e-06)]_67 chr3L:10337652-10337772 9.99e-01 120 chr3L:16060929-16061049 7.90e-01 120 chr2R:16610062-16610182 5.61e-01 120 chr2L:8461928-8462048 3.63e-01 120 chr2L:18496935-18497055 4.75e-02 32_[+4(2.04e-05)]_80 chr3R:25885285-25885405 2.64e-03 111_[+4(5.09e-06)]_1 chr3L:20186454-20186574 9.98e-01 120 chr3R:29541443-29541563 8.37e-01 120 chrX:17397198-17397318 6.16e-05 11_[+5(1.39e-05)]_13_[+1(8.17e-06)]_\ 5_[+5(8.89e-05)]_67 chr3R:24768121-24768241 3.73e-02 67_[+5(9.85e-06)]_45 chr2L:838164-838284 1.75e-01 120 chrX:6643052-6643172 4.11e-01 120 chrX:18525077-18525197 5.02e-01 120 chr3L:19557499-19557619 9.79e-01 120 chr2L:20464440-20464560 1.73e-01 85_[+1(6.78e-05)]_27 chr3R:9159951-9160071 9.96e-01 120 chr3R:17394783-17394903 9.57e-01 120 chr3R:13549746-13549866 9.84e-01 120 chrX:17782145-17782265 9.99e-01 120 chr3R:23872922-23873042 4.39e-01 120 chr2R:11541199-11541319 4.27e-02 28_[+3(5.47e-05)]_84 chr3R:19182949-19183069 7.42e-01 120 chr2L:1916562-1916682 2.32e-01 120 chr3R:13907845-13907965 9.00e-01 120 chr2L:7566754-7566874 6.80e-01 120 chr2L:18566695-18566815 2.63e-01 120 chr3R:17655165-17655285 3.67e-01 120 chr3R:6425801-6425921 1.00e+00 120 chr2R:22540018-22540138 8.25e-01 120 chr2L:827660-827780 7.47e-01 120 chr2L:8080813-8080933 4.54e-01 120 chr3L:4615216-4615336 2.32e-01 120 chr2R:19420570-19420690 7.63e-01 120 chr3R:22878549-22878669 1.00e+00 120 chr3R:15650463-15650583 1.00e+00 120 chr3L:2468496-2468616 5.17e-01 120 chr2R:19860415-19860535 6.38e-01 120 chrX:18238013-18238133 1.19e-01 35_[+1(6.78e-05)]_77 chr3L:15199444-15199564 2.27e-02 120 chr3R:6791213-6791333 9.99e-01 120 chr3L:6817045-6817165 2.98e-02 5_[+4(6.55e-05)]_107 chr2L:1427885-1428005 1.57e-01 120 chr3L:14328478-14328598 9.99e-01 120 chr2L:7519089-7519209 7.76e-03 88_[+5(6.97e-05)]_24 chr2L:18625521-18625641 8.73e-01 120 chrX:1387332-1387452 3.87e-01 120 chr3R:14285138-14285258 1.07e-04 51_[+4(1.02e-05)]_48_[+1(8.17e-06)]_\ 5 chrX:4498394-4498514 8.36e-01 120 chr2L:3856441-3856561 9.98e-01 120 chr3L:16760382-16760502 9.76e-01 120 chr3R:31704699-31704819 9.93e-01 120 chr2L:16476561-16476681 1.72e-04 23_[+4(2.56e-05)]_35_[+5(2.25e-05)]_\ 46 chr2L:20638688-20638808 1.38e-04 15_[+2(6.81e-07)]_97 chr2L:974233-974353 5.33e-03 107_[+5(6.56e-05)]_5 chr2R:15835585-15835705 4.85e-01 120 chr2R:18609032-18609152 2.55e-01 120 chrX:2396644-2396764 7.35e-01 120 chr3L:2159026-2159146 8.90e-01 120 chr2R:7167966-7168086 6.65e-03 70_[+1(5.47e-06)]_42 chr3L:18274274-18274394 1.00e+00 120 chr3L:3978061-3978181 1.00e+00 120 chr2L:21619201-21619321 3.21e-01 120 chr3R:31309411-31309531 5.69e-02 120 chr3R:6182644-6182764 1.49e-02 40_[+5(2.25e-05)]_72 chr3R:4846917-4847037 9.28e-02 120 chrX:3396942-3397062 2.34e-01 120 chr2R:21048299-21048419 1.05e-03 53_[+4(5.09e-06)]_59 chrX:4581859-4581979 1.00e+00 120 chr3L:18771762-18771882 6.01e-02 120 chr3R:18988135-18988255 2.07e-02 31_[+4(2.04e-05)]_81 chr3L:8925763-8925883 3.29e-03 17_[+3(1.33e-06)]_95 chr3L:10951144-10951264 9.18e-02 120 chr3L:11552073-11552193 3.79e-01 120 chr3L:295153-295273 3.88e-01 120 chr2L:1070486-1070606 1.00e+00 120 chr2R:14803429-14803549 9.70e-01 120 chr2L:18328916-18329036 2.72e-02 2_[+1(3.42e-05)]_110 chr2L:6088868-6088988 6.99e-01 120 chr3L:19191934-19192054 2.16e-01 120 chrX:3455509-3455629 9.98e-01 120 chr2L:8554471-8554591 6.10e-01 120 chr3R:15652763-15652883 9.98e-01 120 chr3R:26796658-26796778 4.74e-05 27_[+3(3.88e-06)]_77_[+5(3.63e-05)] chr2L:16869093-16869213 9.99e-01 120 chr2L:3851442-3851562 1.00e+00 120 chr2L:21218893-21219013 3.77e-01 120 chr2L:16476761-16476881 6.26e-01 120 chrX:13226615-13226735 1.00e+00 120 chr2L:19155128-19155248 1.34e-04 30_[+1(1.22e-05)]_15_[+4(5.06e-05)]_\ 59 chr3L:6885832-6885952 9.64e-01 120 chrX:7162605-7162725 8.24e-05 98_[+5(3.34e-06)]_14 chrX:7571314-7571434 9.87e-01 120 chr2R:12727696-12727816 9.44e-01 120 chrX:18775013-18775133 3.45e-04 23_[+1(1.22e-05)]_89 chr3R:17828806-17828926 4.70e-01 120 chr2R:13924332-13924452 6.06e-01 120 chr3R:22260353-22260473 5.94e-01 120 chr3L:20922558-20922678 1.65e-03 97_[+1(5.47e-06)]_15 chr3R:23803837-23803957 9.94e-02 120 chr3R:13796230-13796350 1.73e-01 120 chrX:19224935-19225055 1.00e+00 120 chr3L:10767162-10767282 6.87e-02 31_[+4(9.58e-05)]_81 chrX:3358004-3358124 9.83e-01 120 chr2R:12742616-12742736 3.79e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************