******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/salr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:11432008-11432128 1.0000 120 chr3L:21224440-21224560 1.0000 120 chr2R:15483161-15483281 1.0000 120 chr3L:17587900-17588020 1.0000 120 chr2L:18752947-18753067 1.0000 120 chr2L:11384867-11384987 1.0000 120 chr2L:11432227-11432347 1.0000 120 chr2R:21563614-21563734 1.0000 120 chr3L:19234149-19234269 1.0000 120 chr3L:14063561-14063681 1.0000 120 chr3L:22466541-22466661 1.0000 120 chr2R:8180049-8180169 1.0000 120 chr3L:3536656-3536776 1.0000 120 chr2L:11427831-11427951 1.0000 120 chr3R:28629210-28629330 1.0000 120 chr3R:27685669-27685789 1.0000 120 chr3L:19196737-19196857 1.0000 120 chr3L:20983515-20983635 1.0000 120 chr2L:14556368-14556488 1.0000 120 chr2R:10216586-10216706 1.0000 120 chr3R:31345725-31345845 1.0000 120 chr2L:4065300-4065420 1.0000 120 chrX:23071350-23071470 1.0000 120 chr3R:16210859-16210979 1.0000 120 chr2R:12413300-12413420 1.0000 120 chr3L:13214984-13215104 1.0000 120 chr2L:19990077-19990197 1.0000 120 chr2R:17243802-17243922 1.0000 120 chr2R:6548415-6548535 1.0000 120 chr2R:18648936-18649056 1.0000 120 chr3R:7967329-7967449 1.0000 120 chr2L:3805040-3805160 1.0000 120 chr3R:30821209-30821329 1.0000 120 chr3R:21348075-21348195 1.0000 120 chr3R:19996500-19996620 1.0000 120 chr2L:4619239-4619359 1.0000 120 chr3L:17586814-17586934 1.0000 120 chr3L:22742950-22743070 1.0000 120 chr3R:19808300-19808420 1.0000 120 chr3L:18096865-18096985 1.0000 120 chr2R:17077034-17077154 1.0000 120 chr3R:19070717-19070837 1.0000 120 chrX:15123764-15123884 1.0000 120 chr3R:31512173-31512293 1.0000 120 chr2R:7744829-7744949 1.0000 120 chr2R:23761523-23761643 1.0000 120 chrX:21068066-21068186 1.0000 120 chr3L:21716076-21716196 1.0000 120 chr2L:11333245-11333365 1.0000 120 chrX:17112079-17112199 1.0000 120 chr2R:18230167-18230287 1.0000 120 chr2R:12720754-12720874 1.0000 120 chr2L:11386528-11386648 1.0000 120 chr3R:23408070-23408190 1.0000 120 chr2L:11396560-11396680 1.0000 120 chr3R:18485408-18485528 1.0000 120 chr2L:847266-847386 1.0000 120 chr2L:11382962-11383082 1.0000 120 chr3R:31724261-31724381 1.0000 120 chr3L:21237074-21237194 1.0000 120 chr3L:10198633-10198753 1.0000 120 chr2R:21801106-21801226 1.0000 120 chr3R:18914495-18914615 1.0000 120 chr2R:18899010-18899130 1.0000 120 chr3L:15996931-15997051 1.0000 120 chr2L:11399642-11399762 1.0000 120 chr3R:14292473-14292593 1.0000 120 chr3R:31320004-31320124 1.0000 120 chr2R:21563814-21563934 1.0000 120 chr2L:20002305-20002425 1.0000 120 chr3R:14280512-14280632 1.0000 120 chr3L:4395695-4395815 1.0000 120 chr2L:20340751-20340871 1.0000 120 chr3L:9745522-9745642 1.0000 120 chr3R:11616296-11616416 1.0000 120 chr2L:16435804-16435924 1.0000 120 chr3L:16748524-16748644 1.0000 120 chr3R:14775578-14775698 1.0000 120 chr2R:9903540-9903660 1.0000 120 chr3L:6308640-6308760 1.0000 120 chr3L:16464063-16464183 1.0000 120 chr3L:3419793-3419913 1.0000 120 chr3R:13806712-13806832 1.0000 120 chr3R:15922811-15922931 1.0000 120 chr2L:20435382-20435502 1.0000 120 chr2L:9736119-9736239 1.0000 120 chr3L:4398042-4398162 1.0000 120 chr3R:20283331-20283451 1.0000 120 chr3R:13875491-13875611 1.0000 120 chr3L:18245843-18245963 1.0000 120 chr3L:4745280-4745400 1.0000 120 chr3L:9209064-9209184 1.0000 120 chr3L:2429078-2429198 1.0000 120 chr2L:20844533-20844653 1.0000 120 chr2R:18901682-18901802 1.0000 120 chr3L:18244351-18244471 1.0000 120 chr2L:847520-847640 1.0000 120 chr3L:8782097-8782217 1.0000 120 chr3R:13806914-13807034 1.0000 120 chr2R:22552611-22552731 1.0000 120 chr3R:8470757-8470877 1.0000 120 chr3R:22594434-22594554 1.0000 120 chr3R:27181218-27181338 1.0000 120 chr3R:15113761-15113881 1.0000 120 chr3R:26462805-26462925 1.0000 120 chr3L:14332891-14333011 1.0000 120 chr3L:21229900-21230020 1.0000 120 chr3R:21895962-21896082 1.0000 120 chr3L:10396656-10396776 1.0000 120 chr3L:8423206-8423326 1.0000 120 chr3R:20283532-20283652 1.0000 120 chr3R:13857451-13857571 1.0000 120 chr3R:6102597-6102717 1.0000 120 chr2L:14568645-14568765 1.0000 120 chr3L:8384111-8384231 1.0000 120 chr2L:4648948-4649068 1.0000 120 chrX:11544833-11544953 1.0000 120 chr3R:13807914-13808034 1.0000 120 chr2L:18005642-18005762 1.0000 120 chr2R:21531641-21531761 1.0000 120 chr3R:25459377-25459497 1.0000 120 chr3R:19075301-19075421 1.0000 120 chrX:1988818-1988938 1.0000 120 chr3R:21931497-21931617 1.0000 120 chrX:3454845-3454965 1.0000 120 chr3R:7967530-7967650 1.0000 120 chr3R:4687358-4687478 1.0000 120 chr2L:7949096-7949216 1.0000 120 chrX:293410-293530 1.0000 120 chr2R:5496074-5496194 1.0000 120 chr2R:7173187-7173307 1.0000 120 chr2L:19317963-19318083 1.0000 120 chrX:17112280-17112400 1.0000 120 chr2L:20721568-20721688 1.0000 120 chr3L:15240870-15240990 1.0000 120 chr2L:18348738-18348858 1.0000 120 chrX:12725029-12725149 1.0000 120 chr3L:13263903-13264023 1.0000 120 chr3R:14691523-14691643 1.0000 120 chr2R:8322877-8322997 1.0000 120 chr2R:10213600-10213720 1.0000 120 chr2L:16593999-16594119 1.0000 120 chr3R:15410300-15410420 1.0000 120 chr3R:30344701-30344821 1.0000 120 chr2R:21550542-21550662 1.0000 120 chr3L:18628137-18628257 1.0000 120 chr2R:16710885-16711005 1.0000 120 chr3L:8860119-8860239 1.0000 120 chr3R:19104342-19104462 1.0000 120 chr3L:4407942-4408062 1.0000 120 chr2R:10847507-10847627 1.0000 120 chr2L:11446111-11446231 1.0000 120 chr3L:18079816-18079936 1.0000 120 chr3L:19234357-19234477 1.0000 120 chr3R:21703516-21703636 1.0000 120 chr3L:10398873-10398993 1.0000 120 chr3L:22192313-22192433 1.0000 120 chr2R:20532898-20533018 1.0000 120 chr3R:21653026-21653146 1.0000 120 chr2L:7949913-7950033 1.0000 120 chr2R:21706517-21706637 1.0000 120 chr3L:13406969-13407089 1.0000 120 chr2L:20335069-20335189 1.0000 120 chr3L:5626574-5626694 1.0000 120 chr2R:22148028-22148148 1.0000 120 chr4:1123690-1123810 1.0000 120 chr3L:12275711-12275831 1.0000 120 chr2R:11183343-11183463 1.0000 120 chr3R:20829588-20829708 1.0000 120 chr3R:30256440-30256560 1.0000 120 chr3R:21653251-21653371 1.0000 120 chr3L:8423411-8423531 1.0000 120 chr2R:18300774-18300894 1.0000 120 chr3L:4707922-4708042 1.0000 120 chr3R:12297378-12297498 1.0000 120 chr3R:28852132-28852252 1.0000 120 chr3L:5188539-5188659 1.0000 120 chrX:11544616-11544736 1.0000 120 chrX:6632000-6632120 1.0000 120 chrX:21281648-21281768 1.0000 120 chr3L:9209278-9209398 1.0000 120 chr2L:16588890-16589010 1.0000 120 chr3R:20254403-20254523 1.0000 120 chr2R:11197810-11197930 1.0000 120 chr3R:31314620-31314740 1.0000 120 chr3L:14534730-14534850 1.0000 120 chr3R:31723333-31723453 1.0000 120 chr2L:11341079-11341199 1.0000 120 chrX:2455510-2455630 1.0000 120 chr3L:17010615-17010735 1.0000 120 chr3R:24143917-24144037 1.0000 120 chr3R:18914293-18914413 1.0000 120 chr2L:10849695-10849815 1.0000 120 chr2R:18343000-18343120 1.0000 120 chr2L:11074024-11074144 1.0000 120 chr3R:16241891-16242011 1.0000 120 chr2R:23306148-23306268 1.0000 120 chr3L:16041608-16041728 1.0000 120 chr3L:14422256-14422376 1.0000 120 chr3R:24906075-24906195 1.0000 120 chr2L:172000-172120 1.0000 120 chr3L:4731823-4731943 1.0000 120 chr3R:22526377-22526497 1.0000 120 chrX:5924583-5924703 1.0000 120 chr3L:4623998-4624118 1.0000 120 chr2L:9497021-9497141 1.0000 120 chr3L:16218086-16218206 1.0000 120 chr2L:3805369-3805489 1.0000 120 chr2L:18344441-18344561 1.0000 120 chr3R:30567292-30567412 1.0000 120 chr3L:17981252-17981372 1.0000 120 chr2L:7899195-7899315 1.0000 120 chr3L:15253869-15253989 1.0000 120 chr3L:787732-787852 1.0000 120 chr2R:11315597-11315717 1.0000 120 chrX:6662947-6663067 1.0000 120 chr2R:13469055-13469175 1.0000 120 chr3L:21253050-21253170 1.0000 120 chr3R:31443577-31443697 1.0000 120 chr3L:12072457-12072577 1.0000 120 chrX:13735175-13735295 1.0000 120 chr3L:13109465-13109585 1.0000 120 chr3L:13178378-13178498 1.0000 120 chr3R:6214361-6214481 1.0000 120 chr2R:9684074-9684194 1.0000 120 chr3R:28544814-28544934 1.0000 120 chr3L:741812-741932 1.0000 120 chr3R:14557558-14557678 1.0000 120 chr2R:23020509-23020629 1.0000 120 chr3R:13846080-13846200 1.0000 120 chr3R:12442665-12442785 1.0000 120 chr2R:13957829-13957949 1.0000 120 chr3L:9566966-9567086 1.0000 120 chr2R:6157634-6157754 1.0000 120 chr2R:15740847-15740967 1.0000 120 chr2R:21470501-21470621 1.0000 120 chr3L:19905468-19905588 1.0000 120 chr3L:8881893-8882013 1.0000 120 chr3R:18481129-18481249 1.0000 120 chr3R:15567154-15567274 1.0000 120 chr3L:18078845-18078965 1.0000 120 chr2L:14624019-14624139 1.0000 120 chr3R:24007929-24008049 1.0000 120 chr3R:22150143-22150263 1.0000 120 chr2L:14995200-14995320 1.0000 120 chr2L:18122064-18122184 1.0000 120 chr2L:18466349-18466469 1.0000 120 chr2L:3482850-3482970 1.0000 120 chr2L:18468116-18468236 1.0000 120 chr3L:9065044-9065164 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_salr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/salr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.351 C 0.155 G 0.155 T 0.34 Background letter frequencies (from file dataset with add-one prior applied): A 0.351 C 0.155 G 0.155 T 0.34 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VTGCACAS MEME-1 width = 8 sites = 29 llr = 259 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21::a:7: pos.-specific C 3::a:833 probability G 43a::2:7 matrix T :6:::::: bits 2.7 ** 2.4 ** 2.2 ** 1.9 ** * * Relative 1.6 **** * Entropy 1.3 **** * (12.9 bits) 1.1 **** * 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCACAG consensus CG GCC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20340751-20340871 10 5.46e-06 GAATATTAT GTGCACAG TAATCAAACG chr3L:17586814-17586934 3 5.46e-06 GA GTGCACAG ATTTAGAGTT chr2L:11432008-11432128 7 5.46e-06 GTTTAG GGGCACAG TGGAGCAATT chr3L:8384111-8384231 39 1.33e-05 TGGGGAAAAT CTGCACAG CTGCATTGCT chr3L:5626574-5626694 7 1.57e-05 CAAGAA CTGCACCG TAAAATTTGG chrX:1988818-1988938 52 1.57e-05 ACAATGAATC CGGCACCG CAGGATCGAA chr3R:13857451-13857571 18 2.12e-05 CATTCAGGCT GTGCACAC TGCGAGAAAA chr2L:3805040-3805160 55 2.12e-05 GGAAAACAAG GTGCACAC AAAAGAAAAT chr3L:18079816-18079936 63 2.36e-05 TATTTTCTCA GTGCACCC ACTAGCCTCA chr3R:13875491-13875611 9 2.36e-05 CGGGGGTG GTGCACCC GAACAGTGGA chr3L:9209278-9209398 99 2.91e-05 ATTTTTTTCT CTGCACAC AAATCTTGCC chr2L:14624019-14624139 3 3.15e-05 AG CTGCACCC AGAGAAAATA chr2R:8322877-8322997 19 3.15e-05 TCCAACGATT CTGCACCC TTTCAACAAT chr2L:18122064-18122184 50 4.93e-05 CCGGTGGCAA ATGCACAG GGAATTCAAA chr2R:13957829-13957949 35 4.93e-05 AAACACACAC AGGCACAG AGATTGCTGC chr3R:18914293-18914413 43 4.93e-05 AATTATCTGG GTGCAGAG TAAAATTTAT chr3L:8860119-8860239 58 4.93e-05 TCGTAGTTTA AGGCACAG CCCTATTGGT chr3L:4395695-4395815 87 4.93e-05 TGAAATCACA ATGCACAG TTGAACAGTT chr2L:4619239-4619359 22 4.93e-05 TTCTAATCAG ATGCACAG AACGAGCAGC chr3L:3536656-3536776 73 4.93e-05 AACTTTTCCA AGGCACAG ATTACCAATG chr3R:30567292-30567412 13 6.26e-05 TGCAACGATG CGGCAGAG ACCGAGGCTT chrX:15123764-15123884 99 6.26e-05 GGAATCATAG CGGCAGAG TCAATTGCCA chr3R:6214361-6214481 73 7.06e-05 AACAATTTTA GAGCACCG ATCTAGGACT chr2R:10847507-10847627 57 7.44e-05 ATTTAGTAAA CAGCACAG ATTTTAATTT chr2L:16435804-16435924 8 9.40e-05 TTATAGT GGGCAGAC AATCGATTTT chr3R:20254403-20254523 103 1.04e-04 TAAAATCATG GTGCACGG GAAACAATAT chr3L:2429078-2429198 7 1.04e-04 CCTCAA GTGCAGCC TCCTCGTTGC chrX:11544616-11544736 21 1.24e-04 AGAAGCAATC CAGCACAC TGAGAGAACA chr3R:14691523-14691643 20 1.38e-04 TAAGGGATTG ATGCAGAG TGATATGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20340751-20340871 5.5e-06 9_[+1]_103 chr3L:17586814-17586934 5.5e-06 2_[+1]_110 chr2L:11432008-11432128 5.5e-06 6_[+1]_106 chr3L:8384111-8384231 1.3e-05 38_[+1]_74 chr3L:5626574-5626694 1.6e-05 6_[+1]_106 chrX:1988818-1988938 1.6e-05 51_[+1]_61 chr3R:13857451-13857571 2.1e-05 17_[+1]_95 chr2L:3805040-3805160 2.1e-05 54_[+1]_58 chr3L:18079816-18079936 2.4e-05 62_[+1]_50 chr3R:13875491-13875611 2.4e-05 8_[+1]_104 chr3L:9209278-9209398 2.9e-05 98_[+1]_14 chr2L:14624019-14624139 3.1e-05 2_[+1]_110 chr2R:8322877-8322997 3.1e-05 18_[+1]_94 chr2L:18122064-18122184 4.9e-05 49_[+1]_63 chr2R:13957829-13957949 4.9e-05 34_[+1]_78 chr3R:18914293-18914413 4.9e-05 42_[+1]_70 chr3L:8860119-8860239 4.9e-05 57_[+1]_55 chr3L:4395695-4395815 4.9e-05 86_[+1]_26 chr2L:4619239-4619359 4.9e-05 21_[+1]_91 chr3L:3536656-3536776 4.9e-05 72_[+1]_40 chr3R:30567292-30567412 6.3e-05 12_[+1]_100 chrX:15123764-15123884 6.3e-05 98_[+1]_14 chr3R:6214361-6214481 7.1e-05 72_[+1]_40 chr2R:10847507-10847627 7.4e-05 56_[+1]_56 chr2L:16435804-16435924 9.4e-05 7_[+1]_105 chr3R:20254403-20254523 0.0001 102_[+1]_10 chr3L:2429078-2429198 0.0001 6_[+1]_106 chrX:11544616-11544736 0.00012 20_[+1]_92 chr3R:14691523-14691643 0.00014 19_[+1]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VTGCACAS width=8 seqs=29 chr2L:20340751-20340871 ( 10) GTGCACAG 1 chr3L:17586814-17586934 ( 3) GTGCACAG 1 chr2L:11432008-11432128 ( 7) GGGCACAG 1 chr3L:8384111-8384231 ( 39) CTGCACAG 1 chr3L:5626574-5626694 ( 7) CTGCACCG 1 chrX:1988818-1988938 ( 52) CGGCACCG 1 chr3R:13857451-13857571 ( 18) GTGCACAC 1 chr2L:3805040-3805160 ( 55) GTGCACAC 1 chr3L:18079816-18079936 ( 63) GTGCACCC 1 chr3R:13875491-13875611 ( 9) GTGCACCC 1 chr3L:9209278-9209398 ( 99) CTGCACAC 1 chr2L:14624019-14624139 ( 3) CTGCACCC 1 chr2R:8322877-8322997 ( 19) CTGCACCC 1 chr2L:18122064-18122184 ( 50) ATGCACAG 1 chr2R:13957829-13957949 ( 35) AGGCACAG 1 chr3R:18914293-18914413 ( 43) GTGCAGAG 1 chr3L:8860119-8860239 ( 58) AGGCACAG 1 chr3L:4395695-4395815 ( 87) ATGCACAG 1 chr2L:4619239-4619359 ( 22) ATGCACAG 1 chr3L:3536656-3536776 ( 73) AGGCACAG 1 chr3R:30567292-30567412 ( 13) CGGCAGAG 1 chrX:15123764-15123884 ( 99) CGGCAGAG 1 chr3R:6214361-6214481 ( 73) GAGCACCG 1 chr2R:10847507-10847627 ( 57) CAGCACAG 1 chr2L:16435804-16435924 ( 8) GGGCAGAC 1 chr3R:20254403-20254523 ( 103) GTGCACGG 1 chr3L:2429078-2429198 ( 7) GTGCAGCC 1 chrX:11544616-11544736 ( 21) CAGCACAC 1 chr3R:14691523-14691643 ( 20) ATGCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 4.0e+001 -54 116 142 -1150 -176 -1150 83 87 -1150 -1150 269 -1150 -1150 269 -1150 -1150 151 -1150 -1150 -1150 -1150 236 42 -1150 98 84 -217 -1150 -1150 116 208 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.0e+001 0.241379 0.344828 0.413793 0.000000 0.103448 0.000000 0.275862 0.620690 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.793103 0.206897 0.000000 0.689655 0.275862 0.034483 0.000000 0.000000 0.344828 0.655172 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACAS MEME-1 regular expression -------------------------------------------------------------------------------- [GCA][TG]GCA[CG][AC][GC] -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCTCC MEME-2 width = 8 sites = 6 llr = 75 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C aaa8a:8a probability G :::2:22: matrix T :::::7:: bits 2.7 *** * * 2.4 *** * * 2.2 ***** ** 1.9 ***** ** Relative 1.6 ***** ** Entropy 1.3 ***** ** (18.0 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCCTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23306148-23306268 44 7.31e-07 ATCATCAAAA CCCCCTCC ATTTCTGGGC chr3L:21237074-21237194 21 7.31e-07 GTGCGTTCTC CCCCCTCC CGACCAACGT chr2L:11446111-11446231 75 1.06e-06 GAGGGGGCTT CCCCCGCC AACGAGCCCT chr2L:14568645-14568765 89 1.82e-06 ACAGTGCCTC CCCCCACC ATCCCCTTTT chrX:3454845-3454965 26 3.28e-06 AATAGCAATT CCCCCTGC AGCAACTTTT chr2R:6548415-6548535 5 3.28e-06 GTTC CCCGCTCC TCACGTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23306148-23306268 7.3e-07 43_[+2]_69 chr3L:21237074-21237194 7.3e-07 20_[+2]_92 chr2L:11446111-11446231 1.1e-06 74_[+2]_38 chr2L:14568645-14568765 1.8e-06 88_[+2]_24 chrX:3454845-3454965 3.3e-06 25_[+2]_87 chr2R:6548415-6548535 3.3e-06 4_[+2]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCTCC width=8 seqs=6 chr2R:23306148-23306268 ( 44) CCCCCTCC 1 chr3L:21237074-21237194 ( 21) CCCCCTCC 1 chr2L:11446111-11446231 ( 75) CCCCCGCC 1 chr2L:14568645-14568765 ( 89) CCCCCACC 1 chrX:3454845-3454965 ( 26) CCCCCTGC 1 chr2R:6548415-6548535 ( 5) CCCGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 3.2e+001 -923 269 -923 -923 -923 269 -923 -923 -923 269 -923 -923 -923 243 10 -923 -923 269 -923 -923 -107 -923 10 97 -923 243 10 -923 -923 269 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.166667 0.666667 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCTCC MEME-2 regular expression -------------------------------------------------------------------------------- CCCCCTCC -------------------------------------------------------------------------------- Time 13.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CASCGYYG MEME-3 width = 8 sites = 11 llr = 117 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:::::: pos.-specific C a349:55: probability G ::61a::a matrix T :::::55: bits 2.7 * * * 2.4 * * * 2.2 * ** * 1.9 * ** * Relative 1.6 * *** * Entropy 1.3 * *** * (15.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCGTCG consensus CC CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:28544814-28544934 12 7.54e-07 AGCTGTTTTA CAGCGCCG CTAACCATCG chr2L:4619239-4619359 36 7.54e-07 ACAGAACGAG CAGCGCCG CAATTATGAT chr2L:14568645-14568765 7 3.50e-06 TGATGG CAGCGTCG CAAAATATGG chr2R:6157634-6157754 110 4.56e-06 ATCAAATCGG CCGCGTCG TAT chr3L:4707922-4708042 7 6.22e-06 AGTAAA CAGCGCTG GGGAATAGGT chr2R:7744829-7744949 113 8.60e-06 AGCACCGCAT CACCGTCG chr2R:21563814-21563934 83 1.10e-05 CGCCACAAAT CACCGCTG TCCATCTAGC chr3R:8470757-8470877 88 1.46e-05 AAACTTCGGA CAGCGTTG ACTGCTCATC chr2L:14556368-14556488 101 1.70e-05 ATTCACTTCG CCGCGTTG AAAGTAATTT chrX:6632000-6632120 16 2.29e-05 TCTGCTCTTG CCCCGTTG TTGCAGTTAT chr3R:19808300-19808420 87 2.40e-05 GGTGAGTCAC CACGGCCG GACTAGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:28544814-28544934 7.5e-07 11_[+3]_101 chr2L:4619239-4619359 7.5e-07 35_[+3]_77 chr2L:14568645-14568765 3.5e-06 6_[+3]_106 chr2R:6157634-6157754 4.6e-06 109_[+3]_3 chr3L:4707922-4708042 6.2e-06 6_[+3]_106 chr2R:7744829-7744949 8.6e-06 112_[+3] chr2R:21563814-21563934 1.1e-05 82_[+3]_30 chr3R:8470757-8470877 1.5e-05 87_[+3]_25 chr2L:14556368-14556488 1.7e-05 100_[+3]_12 chrX:6632000-6632120 2.3e-05 15_[+3]_97 chr3R:19808300-19808420 2.4e-05 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASCGYYG width=8 seqs=11 chr3R:28544814-28544934 ( 12) CAGCGCCG 1 chr2L:4619239-4619359 ( 36) CAGCGCCG 1 chr2L:14568645-14568765 ( 7) CAGCGTCG 1 chr2R:6157634-6157754 ( 110) CCGCGTCG 1 chr3L:4707922-4708042 ( 7) CAGCGCTG 1 chr2R:7744829-7744949 ( 113) CACCGTCG 1 chr2R:21563814-21563934 ( 83) CACCGCTG 1 chr3R:8470757-8470877 ( 88) CAGCGTTG 1 chr2L:14556368-14556488 ( 101) CCGCGTTG 1 chrX:6632000-6632120 ( 16) CCCCGTTG 1 chr3R:19808300-19808420 ( 87) CACGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 3.2e+003 -1010 269 -1010 -1010 105 82 -1010 -1010 -1010 123 204 -1010 -1010 255 -77 -1010 -1010 -1010 269 -1010 -1010 155 -1010 68 -1010 182 -1010 42 -1010 -1010 269 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.2e+003 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.545455 0.000000 0.454545 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCGYYG MEME-3 regular expression -------------------------------------------------------------------------------- C[AC][GC]CG[TC][CT]G -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCTC MEME-4 width = 8 sites = 2 llr = 28 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaa:a probability G :a:::::: matrix T ::::::a: bits 2.7 ****** * 2.4 ****** * 2.2 ****** * 1.9 ****** * Relative 1.6 ******** Entropy 1.3 ******** (20.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCCCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21237074-21237194 2 7.31e-07 A CGCCCCTC TGTGCGTTCT chr3R:30821209-30821329 58 7.31e-07 CGGCTTTGAA CGCCCCTC TTCTTCTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21237074-21237194 7.3e-07 1_[+4]_111 chr3R:30821209-30821329 7.3e-07 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCTC width=8 seqs=2 chr3L:21237074-21237194 ( 2) CGCCCCTC 1 chr3R:30821209-30821329 ( 58) CGCCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.6e+003 -765 269 -765 -765 -765 -765 268 -765 -765 269 -765 -765 -765 269 -765 -765 -765 269 -765 -765 -765 269 -765 -765 -765 -765 -765 155 -765 269 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCTC MEME-4 regular expression -------------------------------------------------------------------------------- CGCCCCTC -------------------------------------------------------------------------------- Time 26.17 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGCGAG MEME-5 width = 8 sites = 3 llr = 41 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C a:::a:3: probability G :aaa:a:a matrix T :::::::: bits 2.7 ****** * 2.4 ****** * 2.2 ****** * 1.9 ****** * Relative 1.6 ****** * Entropy 1.3 ****** * (19.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGGGCGAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20983515-20983635 110 3.33e-07 TGTTAGAAAG CGGGCGCG GTT chr3L:10198633-10198753 31 1.09e-06 CAAAAGATAC CGGGCGAG GGGTACACAC chr2L:3805040-3805160 23 1.09e-06 TGGGTGGGAA CGGGCGAG GAATTCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20983515-20983635 3.3e-07 109_[+5]_3 chr3L:10198633-10198753 1.1e-06 30_[+5]_82 chr2L:3805040-3805160 1.1e-06 22_[+5]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGCGAG width=8 seqs=3 chr3L:20983515-20983635 ( 110) CGGGCGCG 1 chr3L:10198633-10198753 ( 31) CGGGCGAG 1 chr2L:3805040-3805160 ( 23) CGGGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.1e+003 -823 269 -823 -823 -823 -823 268 -823 -823 -823 268 -823 -823 -823 268 -823 -823 269 -823 -823 -823 -823 268 -823 92 111 -823 -823 -823 -823 268 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGAG MEME-5 regular expression -------------------------------------------------------------------------------- CGGGCG[AC]G -------------------------------------------------------------------------------- Time 32.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11432008-11432128 2.05e-02 6_[+1(5.46e-06)]_106 chr3L:21224440-21224560 8.49e-01 120 chr2R:15483161-15483281 9.98e-01 120 chr3L:17587900-17588020 4.05e-01 120 chr2L:18752947-18753067 3.42e-01 120 chr2L:11384867-11384987 1.00e+00 120 chr2L:11432227-11432347 9.21e-01 120 chr2R:21563614-21563734 8.99e-01 120 chr3L:19234149-19234269 1.00e+00 120 chr3L:14063561-14063681 6.94e-01 120 chr3L:22466541-22466661 2.06e-01 120 chr2R:8180049-8180169 9.71e-01 120 chr3L:3536656-3536776 1.11e-01 72_[+1(4.93e-05)]_40 chr2L:11427831-11427951 2.85e-01 120 chr3R:28629210-28629330 2.45e-01 120 chr3R:27685669-27685789 8.47e-01 120 chr3L:19196737-19196857 8.02e-01 120 chr3L:20983515-20983635 2.81e-03 109_[+5(3.33e-07)]_3 chr2L:14556368-14556488 7.38e-03 100_[+3(1.70e-05)]_12 chr2R:10216586-10216706 1.00e+00 120 chr3R:31345725-31345845 1.49e-01 120 chr2L:4065300-4065420 9.50e-01 120 chrX:23071350-23071470 1.60e-01 120 chr3R:16210859-16210979 8.08e-01 120 chr2R:12413300-12413420 6.99e-01 120 chr3L:13214984-13215104 9.03e-01 120 chr2L:19990077-19990197 9.78e-01 120 chr2R:17243802-17243922 1.00e+00 120 chr2R:6548415-6548535 1.57e-05 4_[+2(3.28e-06)]_108 chr2R:18648936-18649056 1.00e+00 120 chr3R:7967329-7967449 9.92e-01 120 chr2L:3805040-3805160 6.93e-05 22_[+5(1.09e-06)]_24_[+1(2.12e-05)]_\ 58 chr3R:30821209-30821329 8.11e-04 57_[+4(7.31e-07)]_55 chr3R:21348075-21348195 8.79e-01 120 chr3R:19996500-19996620 9.94e-01 120 chr2L:4619239-4619359 5.54e-05 21_[+1(4.93e-05)]_6_[+3(7.54e-07)]_\ 77 chr3L:17586814-17586934 8.93e-02 2_[+1(5.46e-06)]_110 chr3L:22742950-22743070 6.85e-01 120 chr3R:19808300-19808420 5.88e-03 86_[+3(2.40e-05)]_26 chr3L:18096865-18096985 4.46e-01 120 chr2R:17077034-17077154 9.77e-01 120 chr3R:19070717-19070837 1.00e+00 120 chrX:15123764-15123884 4.30e-02 98_[+1(6.26e-05)]_14 chr3R:31512173-31512293 3.92e-01 120 chr2R:7744829-7744949 2.63e-03 112_[+3(8.60e-06)] chr2R:23761523-23761643 5.52e-01 120 chrX:21068066-21068186 9.87e-01 120 chr3L:21716076-21716196 1.95e-01 120 chr2L:11333245-11333365 2.58e-04 63_[+4(3.01e-05)]_49 chrX:17112079-17112199 5.37e-02 120 chr2R:18230167-18230287 8.96e-02 120 chr2R:12720754-12720874 8.02e-01 120 chr2L:11386528-11386648 9.66e-01 120 chr3R:23408070-23408190 4.57e-01 120 chr2L:11396560-11396680 3.79e-01 120 chr3R:18485408-18485528 5.74e-01 120 chr2L:847266-847386 9.76e-01 120 chr2L:11382962-11383082 2.85e-04 64_[+3(3.32e-05)]_48 chr3R:31724261-31724381 9.98e-01 120 chr3L:21237074-21237194 5.33e-08 1_[+4(7.31e-07)]_11_[+2(7.31e-07)]_\ 92 chr3L:10198633-10198753 7.51e-03 30_[+5(1.09e-06)]_82 chr2R:21801106-21801226 8.95e-01 120 chr3R:18914495-18914615 9.46e-01 120 chr2R:18899010-18899130 4.08e-01 120 chr3L:15996931-15997051 9.59e-01 120 chr2L:11399642-11399762 3.90e-01 120 chr3R:14292473-14292593 4.24e-01 120 chr3R:31320004-31320124 8.09e-01 120 chr2R:21563814-21563934 6.34e-03 82_[+3(1.10e-05)]_30 chr2L:20002305-20002425 3.72e-01 120 chr3R:14280512-14280632 2.20e-01 120 chr3L:4395695-4395815 6.43e-02 86_[+1(4.93e-05)]_26 chr2L:20340751-20340871 9.42e-02 9_[+1(5.46e-06)]_103 chr3L:9745522-9745642 1.00e+00 120 chr3R:11616296-11616416 7.65e-01 120 chr2L:16435804-16435924 2.32e-01 7_[+1(9.40e-05)]_105 chr3L:16748524-16748644 6.88e-01 120 chr3R:14775578-14775698 3.51e-01 120 chr2R:9903540-9903660 1.00e+00 120 chr3L:6308640-6308760 3.58e-01 120 chr3L:16464063-16464183 5.97e-01 120 chr3L:3419793-3419913 5.57e-01 120 chr3R:13806712-13806832 9.59e-01 120 chr3R:15922811-15922931 8.36e-01 120 chr2L:20435382-20435502 8.42e-01 120 chr2L:9736119-9736239 4.31e-01 120 chr3L:4398042-4398162 9.30e-01 120 chr3R:20283331-20283451 9.47e-01 120 chr3R:13875491-13875611 2.75e-03 [+5(8.44e-05)]_[+1(2.36e-05)]_104 chr3L:18245843-18245963 1.00e+00 120 chr3L:4745280-4745400 2.40e-01 120 chr3L:9209064-9209184 3.94e-01 120 chr3L:2429078-2429198 6.49e-03 120 chr2L:20844533-20844653 1.20e-01 120 chr2R:18901682-18901802 8.52e-01 120 chr3L:18244351-18244471 8.87e-01 120 chr2L:847520-847640 1.58e-01 120 chr3L:8782097-8782217 9.81e-01 120 chr3R:13806914-13807034 1.00e+00 120 chr2R:22552611-22552731 7.28e-01 120 chr3R:8470757-8470877 4.70e-02 87_[+3(1.46e-05)]_25 chr3R:22594434-22594554 9.97e-01 120 chr3R:27181218-27181338 9.17e-01 120 chr3R:15113761-15113881 9.99e-01 120 chr3R:26462805-26462925 5.39e-01 120 chr3L:14332891-14333011 2.37e-03 49_[+2(8.06e-05)]_33_[+4(8.44e-05)]_\ 22 chr3L:21229900-21230020 7.34e-01 120 chr3R:21895962-21896082 9.49e-01 120 chr3L:10396656-10396776 5.63e-01 120 chr3L:8423206-8423326 1.00e+00 120 chr3R:20283532-20283652 9.78e-01 120 chr3R:13857451-13857571 5.10e-02 17_[+1(2.12e-05)]_95 chr3R:6102597-6102717 3.36e-01 120 chr2L:14568645-14568765 2.45e-07 6_[+3(3.50e-06)]_74_[+2(1.82e-06)]_\ 24 chr3L:8384111-8384231 3.99e-03 38_[+1(1.33e-05)]_74 chr2L:4648948-4649068 9.57e-01 120 chrX:11544833-11544953 9.02e-01 120 chr3R:13807914-13808034 1.77e-01 120 chr2L:18005642-18005762 9.87e-01 120 chr2R:21531641-21531761 6.16e-01 120 chr3R:25459377-25459497 1.00e+00 120 chr3R:19075301-19075421 7.11e-01 120 chrX:1988818-1988938 4.46e-05 51_[+1(1.57e-05)]_61 chr3R:21931497-21931617 9.91e-01 120 chrX:3454845-3454965 2.75e-03 25_[+2(3.28e-06)]_87 chr3R:7967530-7967650 3.58e-01 120 chr3R:4687358-4687478 9.62e-01 120 chr2L:7949096-7949216 3.55e-01 120 chrX:293410-293530 3.09e-01 120 chr2R:5496074-5496194 1.00e+00 120 chr2R:7173187-7173307 3.29e-01 120 chr2L:19317963-19318083 6.88e-01 120 chrX:17112280-17112400 3.79e-01 120 chr2L:20721568-20721688 9.56e-01 120 chr3L:15240870-15240990 9.18e-01 120 chr2L:18348738-18348858 9.63e-01 120 chrX:12725029-12725149 9.96e-01 120 chr3L:13263903-13264023 8.59e-01 120 chr3R:14691523-14691643 4.86e-01 120 chr2R:8322877-8322997 8.34e-02 18_[+1(3.15e-05)]_94 chr2R:10213600-10213720 9.84e-01 120 chr2L:16593999-16594119 8.87e-01 120 chr3R:15410300-15410420 9.94e-01 120 chr3R:30344701-30344821 8.19e-01 120 chr2R:21550542-21550662 9.99e-01 120 chr3L:18628137-18628257 7.92e-01 120 chr2R:16710885-16711005 4.02e-01 120 chr3L:8860119-8860239 1.16e-01 57_[+1(4.93e-05)]_55 chr3R:19104342-19104462 2.14e-01 120 chr3L:4407942-4408062 4.34e-03 95_[+4(8.44e-05)]_17 chr2R:10847507-10847627 3.37e-02 56_[+1(7.44e-05)]_46_[+3(7.25e-05)]_\ 2 chr2L:11446111-11446231 5.87e-05 74_[+2(1.06e-06)]_38 chr3L:18079816-18079936 8.90e-03 62_[+1(2.36e-05)]_50 chr3L:19234357-19234477 5.59e-01 120 chr3R:21703516-21703636 4.09e-01 120 chr3L:10398873-10398993 7.12e-01 120 chr3L:22192313-22192433 5.24e-01 120 chr2R:20532898-20533018 4.09e-01 120 chr3R:21653026-21653146 1.10e-02 13_[+4(8.44e-05)]_99 chr2L:7949913-7950033 5.02e-01 120 chr2R:21706517-21706637 9.46e-01 120 chr3L:13406969-13407089 9.99e-01 120 chr2L:20335069-20335189 9.92e-01 120 chr3L:5626574-5626694 2.89e-02 6_[+1(1.57e-05)]_106 chr2R:22148028-22148148 1.97e-01 120 chr4:1123690-1123810 7.28e-01 120 chr3L:12275711-12275831 1.00e+00 120 chr2R:11183343-11183463 9.07e-01 120 chr3R:20829588-20829708 9.76e-01 120 chr3R:30256440-30256560 3.74e-01 120 chr3R:21653251-21653371 1.73e-01 120 chr3L:8423411-8423531 9.86e-01 120 chr2R:18300774-18300894 5.51e-01 120 chr3L:4707922-4708042 2.50e-02 6_[+3(6.22e-06)]_106 chr3R:12297378-12297498 2.41e-01 120 chr3R:28852132-28852252 1.22e-01 5_[+4(8.44e-05)]_107 chr3L:5188539-5188659 9.03e-01 120 chrX:11544616-11544736 4.84e-02 120 chrX:6632000-6632120 1.55e-02 15_[+3(2.29e-05)]_97 chrX:21281648-21281768 9.29e-01 120 chr3L:9209278-9209398 2.50e-01 98_[+1(2.91e-05)]_14 chr2L:16588890-16589010 4.78e-01 120 chr3R:20254403-20254523 2.94e-01 120 chr2R:11197810-11197930 7.23e-02 120 chr3R:31314620-31314740 3.85e-02 120 chr3L:14534730-14534850 1.00e+00 120 chr3R:31723333-31723453 9.45e-01 120 chr2L:11341079-11341199 9.96e-01 120 chrX:2455510-2455630 6.80e-01 120 chr3L:17010615-17010735 9.91e-01 120 chr3R:24143917-24144037 5.26e-01 120 chr3R:18914293-18914413 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chr3L:21253050-21253170 9.97e-01 120 chr3R:31443577-31443697 9.88e-01 120 chr3L:12072457-12072577 1.31e-02 120 chrX:13735175-13735295 1.69e-01 120 chr3L:13109465-13109585 4.12e-01 120 chr3L:13178378-13178498 1.00e+00 120 chr3R:6214361-6214481 9.94e-02 72_[+1(7.06e-05)]_40 chr2R:9684074-9684194 9.68e-01 120 chr3R:28544814-28544934 6.87e-06 11_[+3(7.54e-07)]_24_[+5(8.44e-05)]_\ 69 chr3L:741812-741932 5.42e-01 120 chr3R:14557558-14557678 8.83e-02 120 chr2R:23020509-23020629 5.11e-01 120 chr3R:13846080-13846200 5.90e-01 120 chr3R:12442665-12442785 5.71e-02 120 chr2R:13957829-13957949 1.48e-03 34_[+1(4.93e-05)]_78 chr3L:9566966-9567086 9.87e-01 120 chr2R:6157634-6157754 5.86e-05 109_[+3(4.56e-06)]_3 chr2R:15740847-15740967 1.00e+00 120 chr2R:21470501-21470621 1.16e-01 120 chr3L:19905468-19905588 2.16e-01 120 chr3L:8881893-8882013 8.97e-01 120 chr3R:18481129-18481249 9.99e-01 120 chr3R:15567154-15567274 6.88e-01 120 chr3L:18078845-18078965 2.20e-01 120 chr2L:14624019-14624139 2.66e-02 2_[+1(3.15e-05)]_110 chr3R:24007929-24008049 9.99e-01 120 chr3R:22150143-22150263 1.19e-02 120 chr2L:14995200-14995320 9.41e-01 120 chr2L:18122064-18122184 2.40e-02 49_[+1(4.93e-05)]_63 chr2L:18466349-18466469 9.98e-01 120 chr2L:3482850-3482970 9.86e-01 120 chr2L:18468116-18468236 1.00e+00 120 chr3L:9065044-9065164 3.65e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************