******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/salm.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:17646468-17646588 1.0000 120 chr2L:1201475-1201595 1.0000 120 chr2L:14025474-14025594 1.0000 120 chr2L:6819788-6819908 1.0000 120 chr3R:23534781-23534901 1.0000 120 chr2L:11441132-11441252 1.0000 120 chr2R:14485933-14486053 1.0000 120 chr3L:5947190-5947310 1.0000 120 chr2L:11460680-11460800 1.0000 120 chr2R:13560048-13560168 1.0000 120 chr3R:26655683-26655803 1.0000 120 chr2R:10136154-10136274 1.0000 120 chr2L:11468138-11468258 1.0000 120 chr2L:6178281-6178401 1.0000 120 chr3L:7962491-7962611 1.0000 120 chr2R:22542626-22542746 1.0000 120 chr3R:23460748-23460868 1.0000 120 chr2L:12508823-12508943 1.0000 120 chr3R:24798724-24798844 1.0000 120 chr2L:20969848-20969968 1.0000 120 chr2R:19414712-19414832 1.0000 120 chr2L:12589175-12589295 1.0000 120 chr3R:8924254-8924374 1.0000 120 chr3R:22197774-22197894 1.0000 120 chr3L:7938633-7938753 1.0000 120 chr2L:11444295-11444415 1.0000 120 chr3L:14552042-14552162 1.0000 120 chr3L:1169805-1169925 1.0000 120 chr3R:14798719-14798839 1.0000 120 chr2L:11740592-11740712 1.0000 120 chrX:14919011-14919131 1.0000 120 chr3R:24139214-24139334 1.0000 120 chr2L:16714040-16714160 1.0000 120 chr2L:16857783-16857903 1.0000 120 chr3L:12675310-12675430 1.0000 120 chr3R:8807748-8807868 1.0000 120 chr3R:13986863-13986983 1.0000 120 chr2R:6532593-6532713 1.0000 120 chr3L:14650509-14650629 1.0000 120 chr3L:8873247-8873367 1.0000 120 chr3R:21871586-21871706 1.0000 120 chr2L:5971356-5971476 1.0000 120 chr2R:21194700-21194820 1.0000 120 chr3R:5066641-5066761 1.0000 120 chr3R:11688321-11688441 1.0000 120 chr2L:4475459-4475579 1.0000 120 chr3R:26222413-26222533 1.0000 120 chr3R:5076949-5077069 1.0000 120 chr2R:22657686-22657806 1.0000 120 chr2R:6153241-6153361 1.0000 120 chr3R:8208626-8208746 1.0000 120 chrX:10108238-10108358 1.0000 120 chr2L:3299194-3299314 1.0000 120 chrX:8685596-8685716 1.0000 120 chr2R:12009297-12009417 1.0000 120 chr2R:14217716-14217836 1.0000 120 chr2R:9404554-9404674 1.0000 120 chrX:8106733-8106853 1.0000 120 chr3L:18994716-18994836 1.0000 120 chr2L:7352866-7352986 1.0000 120 chr3L:19165259-19165379 1.0000 120 chr2L:2171415-2171535 1.0000 120 chr2L:11446084-11446204 1.0000 120 chr2L:20975552-20975672 1.0000 120 chr3R:19568789-19568909 1.0000 120 chr3L:878056-878176 1.0000 120 chr3R:4906215-4906335 1.0000 120 chr3R:31127627-31127747 1.0000 120 chr2L:20069729-20069849 1.0000 120 chr2L:14403708-14403828 1.0000 120 chr2R:9494413-9494533 1.0000 120 chr3L:11419631-11419751 1.0000 120 chr3L:17963834-17963954 1.0000 120 chr3R:24571546-24571666 1.0000 120 chr3L:15704804-15704924 1.0000 120 chr2L:7284958-7285078 1.0000 120 chr3L:15252085-15252205 1.0000 120 chrX:6253840-6253960 1.0000 120 chr3L:1742058-1742178 1.0000 120 chr2R:11901831-11901951 1.0000 120 chr3R:6433253-6433373 1.0000 120 chr2R:11426853-11426973 1.0000 120 chr2L:6789549-6789669 1.0000 120 chr2L:13886657-13886777 1.0000 120 chr3R:21163425-21163545 1.0000 120 chrX:8206003-8206123 1.0000 120 chr3L:10334269-10334389 1.0000 120 chr2L:9123687-9123807 1.0000 120 chr2L:6193275-6193395 1.0000 120 chrX:6092325-6092445 1.0000 120 chr2R:16289109-16289229 1.0000 120 chr2R:16161638-16161758 1.0000 120 chr2R:13563578-13563698 1.0000 120 chr2L:11447766-11447886 1.0000 120 chr3L:17971657-17971777 1.0000 120 chr2R:16162622-16162742 1.0000 120 chr2R:11797327-11797447 1.0000 120 chr3L:4293877-4293997 1.0000 120 chr3L:20406381-20406501 1.0000 120 chr4:495971-496091 1.0000 120 chrX:17121702-17121822 1.0000 120 chr3L:13232921-13233041 1.0000 120 chr3L:4720773-4720893 1.0000 120 chrX:5524340-5524460 1.0000 120 chr3R:6401060-6401180 1.0000 120 chr3L:887699-887819 1.0000 120 chrX:5992882-5993002 1.0000 120 chr2R:17083186-17083306 1.0000 120 chr2R:16723761-16723881 1.0000 120 chr3L:18786190-18786310 1.0000 120 chr4:1199391-1199511 1.0000 120 chr2L:5233552-5233672 1.0000 120 chr2L:3572747-3572867 1.0000 120 chr3L:6496909-6497029 1.0000 120 chr2L:6826413-6826533 1.0000 120 chr3R:5080105-5080225 1.0000 120 chr2R:16849541-16849661 1.0000 120 chr2L:9389139-9389259 1.0000 120 chr2R:18564417-18564537 1.0000 120 chr3R:18991930-18992050 1.0000 120 chr3L:20209190-20209310 1.0000 120 chr2L:14699743-14699863 1.0000 120 chrX:14593269-14593389 1.0000 120 chr3R:14477455-14477575 1.0000 120 chr3L:3786906-3787026 1.0000 120 chr3L:19181280-19181400 1.0000 120 chrX:3163086-3163206 1.0000 120 chr3R:13820564-13820684 1.0000 120 chrX:3742807-3742927 1.0000 120 chr3L:18795673-18795793 1.0000 120 chr3L:16486591-16486711 1.0000 120 chr3R:22780259-22780379 1.0000 120 chr3R:14296266-14296386 1.0000 120 chr2R:11775148-11775268 1.0000 120 chr3R:10566891-10567011 1.0000 120 chr3L:1320508-1320628 1.0000 120 chr2L:11736133-11736253 1.0000 120 chr3L:21065385-21065505 1.0000 120 chr2L:2168332-2168452 1.0000 120 chr2L:8100943-8101063 1.0000 120 chr2R:16209726-16209846 1.0000 120 chr3R:5016456-5016576 1.0000 120 chrX:8837357-8837477 1.0000 120 chr2R:22549745-22549865 1.0000 120 chrX:3427059-3427179 1.0000 120 chr3L:20187993-20188113 1.0000 120 chr3L:15823907-15824027 1.0000 120 chr3R:17620001-17620121 1.0000 120 chrX:6542489-6542609 1.0000 120 chr3L:19847074-19847194 1.0000 120 chr2R:24324006-24324126 1.0000 120 chr2L:7214984-7215104 1.0000 120 chr2R:17274115-17274235 1.0000 120 chr2L:10146885-10147005 1.0000 120 chr2L:7685446-7685566 1.0000 120 chr3L:18817806-18817926 1.0000 120 chrX:2653618-2653738 1.0000 120 chr3R:22631230-22631350 1.0000 120 chr3L:10674446-10674566 1.0000 120 chr2R:14314457-14314577 1.0000 120 chr2R:8603546-8603666 1.0000 120 chr3L:9692411-9692531 1.0000 120 chr3R:11663612-11663732 1.0000 120 chr2L:14230564-14230684 1.0000 120 chr2L:11038945-11039065 1.0000 120 chr2R:22593198-22593318 1.0000 120 chr2R:24897760-24897880 1.0000 120 chr2R:17714539-17714659 1.0000 120 chr3L:7859862-7859982 1.0000 120 chr2L:14405196-14405316 1.0000 120 chr2R:25076905-25077025 1.0000 120 chr2L:14615996-14616116 1.0000 120 chr3R:15983637-15983757 1.0000 120 chr2L:8938125-8938245 1.0000 120 chr2R:6023254-6023374 1.0000 120 chr3R:29717658-29717778 1.0000 120 chr2R:19725978-19726098 1.0000 120 chr3L:10741332-10741452 1.0000 120 chr2L:13906127-13906247 1.0000 120 chr2R:21549055-21549175 1.0000 120 chr3R:23722104-23722224 1.0000 120 chr3R:16276322-16276442 1.0000 120 chr2L:14490177-14490297 1.0000 120 chr3L:3691754-3691874 1.0000 120 chr2L:19370247-19370367 1.0000 120 chr3L:14274815-14274935 1.0000 120 chr3R:4989267-4989387 1.0000 120 chr2R:14109823-14109943 1.0000 120 chr2L:425679-425799 1.0000 120 chr2L:7150901-7151021 1.0000 120 chr3L:16640649-16640769 1.0000 120 chr2L:3569934-3570054 1.0000 120 chr3L:15999436-15999556 1.0000 120 chr3L:8699857-8699977 1.0000 120 chr2L:5547522-5547642 1.0000 120 chr2L:16819870-16819990 1.0000 120 chr3L:17047800-17047920 1.0000 120 chr3L:779066-779186 1.0000 120 chr3R:14482097-14482217 1.0000 120 chr3L:19169138-19169258 1.0000 120 chr2R:16581803-16581923 1.0000 120 chr2L:12506847-12506967 1.0000 120 chr2R:7474752-7474872 1.0000 120 chr3R:14680507-14680627 1.0000 120 chrX:6700468-6700588 1.0000 120 chr3L:8705154-8705274 1.0000 120 chr3L:3240422-3240542 1.0000 120 chr2L:1094821-1094941 1.0000 120 chr3L:960735-960855 1.0000 120 chr3L:6217964-6218084 1.0000 120 chr3L:4534091-4534211 1.0000 120 chr3L:4615211-4615331 1.0000 120 chr2R:9546541-9546661 1.0000 120 chr3L:607058-607178 1.0000 120 chrX:5989563-5989683 1.0000 120 chr3L:17532332-17532452 1.0000 120 chr3R:21127777-21127897 1.0000 120 chr2R:18350036-18350156 1.0000 120 chr3R:8180580-8180700 1.0000 120 chr3R:5031979-5032099 1.0000 120 chr3R:9759536-9759656 1.0000 120 chr3L:20922514-20922634 1.0000 120 chr3R:15366983-15367103 1.0000 120 chr2R:18397621-18397741 1.0000 120 chr2R:12741212-12741332 1.0000 120 chr2L:1627731-1627851 1.0000 120 chr2L:10238242-10238362 1.0000 120 chr3L:16045409-16045529 1.0000 120 chr3R:17828761-17828881 1.0000 120 chr3R:22464647-22464767 1.0000 120 chr2R:9283965-9284085 1.0000 120 chr2R:13431064-13431184 1.0000 120 chrX:5786603-5786723 1.0000 120 chr2R:22387680-22387800 1.0000 120 chr2L:7828925-7829045 1.0000 120 chr2R:17533821-17533941 1.0000 120 chr3R:14748797-14748917 1.0000 120 chr3L:10391074-10391194 1.0000 120 chr3R:26185408-26185528 1.0000 120 chr3L:17896091-17896211 1.0000 120 chr3L:329262-329382 1.0000 120 chr2R:12876583-12876703 1.0000 120 chr3L:11273588-11273708 1.0000 120 chr2L:21218902-21219022 1.0000 120 chr2L:20935540-20935660 1.0000 120 chr2L:13839231-13839351 1.0000 120 chr2R:18400544-18400664 1.0000 120 chr3L:9125249-9125369 1.0000 120 chr2L:9570764-9570884 1.0000 120 chr2L:21753516-21753636 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_salm/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/salm.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.184 G 0.185 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.184 G 0.185 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YSSCCSSC MEME-1 width = 8 sites = 20 llr = 196 E-value = 2.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 454aa65a probability G :57::55: matrix T 6::::::: bits 2.4 ** * 2.2 ** * 2.0 ** * 1.7 ** * Relative 1.5 ******* Entropy 1.2 ******* (14.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGCCCCC consensus CGC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3572747-3572867 15 1.21e-05 AATTTACAAC TGGCCCCC ACTAATAGAG chr2R:12009297-12009417 28 1.21e-05 CTTCTTGTTA TCGCCCGC TTTTATGAAA chr2L:5971356-5971476 106 1.21e-05 GCACCCTCGC TCGCCCGC CTCCATC chr3L:8699857-8699977 28 1.58e-05 CGTGACTGTT CCGCCGCC GCAGGTTTTT chr3L:887699-887819 76 1.58e-05 CTGCAATCGA TGGCCCGC TTATCAGTAT chr3L:8873247-8873367 18 1.58e-05 CCTCAAACTG CCGCCGCC GCTGCTGCAC chr2R:6532593-6532713 86 1.58e-05 TCCCCGACAT CCGCCGCC CTGTCATATT chr3L:1169805-1169925 107 1.58e-05 GCAACGTTTA TGGCCCGC TCACAA chr2R:9546541-9546661 14 2.07e-05 TTAAAACCAA CCGCCGGC GACAAGCACA chr3L:14274815-14274935 43 2.07e-05 TAAATATTTG CCGCCGGC AAATATTTAA chr2L:7685446-7685566 40 2.07e-05 TCGTAAATAA TCGCCGCC GTTCTTATCG chr2R:14109823-14109943 104 2.66e-05 CCGTTTACCT TGGCCGCC ACTCGACTG chr2R:11775148-11775268 44 3.03e-05 CTTTTCCACC TGGCCGGC GCTTCCAGCT chr3L:19169138-19169258 64 3.52e-05 TTTTACTCTT CCCCCCGC GGGAGATAAG chr2L:1094821-1094941 59 4.10e-05 TTGCACTGTT TGCCCCCC CTCCTCCCCC chr2L:11038945-11039065 39 4.10e-05 AGCTAACTGC TGCCCCCC TCTTTGCCCT chr2L:5233552-5233672 80 4.10e-05 TAGTATTTAC TGCCCCCC AAAAACGCAC chr3R:22197774-22197894 25 4.10e-05 TGATAAGACC CGCCCCGC TACGTAGGGA chr2R:17083186-17083306 11 4.46e-05 AGTTAATTTA TGCCCCGC CACTCCAAGC chr2L:11446084-11446204 102 4.46e-05 GAGGGGGCTT CCCCCGCC AACGAGCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3572747-3572867 1.2e-05 14_[+1]_98 chr2R:12009297-12009417 1.2e-05 27_[+1]_85 chr2L:5971356-5971476 1.2e-05 105_[+1]_7 chr3L:8699857-8699977 1.6e-05 27_[+1]_85 chr3L:887699-887819 1.6e-05 75_[+1]_37 chr3L:8873247-8873367 1.6e-05 17_[+1]_95 chr2R:6532593-6532713 1.6e-05 85_[+1]_27 chr3L:1169805-1169925 1.6e-05 106_[+1]_6 chr2R:9546541-9546661 2.1e-05 13_[+1]_99 chr3L:14274815-14274935 2.1e-05 42_[+1]_70 chr2L:7685446-7685566 2.1e-05 39_[+1]_73 chr2R:14109823-14109943 2.7e-05 103_[+1]_9 chr2R:11775148-11775268 3e-05 43_[+1]_69 chr3L:19169138-19169258 3.5e-05 63_[+1]_49 chr2L:1094821-1094941 4.1e-05 58_[+1]_54 chr2L:11038945-11039065 4.1e-05 38_[+1]_74 chr2L:5233552-5233672 4.1e-05 79_[+1]_33 chr3R:22197774-22197894 4.1e-05 24_[+1]_88 chr2R:17083186-17083306 4.5e-05 10_[+1]_102 chr2L:11446084-11446204 4.5e-05 101_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YSSCCSSC width=8 seqs=20 chr2L:3572747-3572867 ( 15) TGGCCCCC 1 chr2R:12009297-12009417 ( 28) TCGCCCGC 1 chr2L:5971356-5971476 ( 106) TCGCCCGC 1 chr3L:8699857-8699977 ( 28) CCGCCGCC 1 chr3L:887699-887819 ( 76) TGGCCCGC 1 chr3L:8873247-8873367 ( 18) CCGCCGCC 1 chr2R:6532593-6532713 ( 86) CCGCCGCC 1 chr3L:1169805-1169925 ( 107) TGGCCCGC 1 chr2R:9546541-9546661 ( 14) CCGCCGGC 1 chr3L:14274815-14274935 ( 43) CCGCCGGC 1 chr2L:7685446-7685566 ( 40) TCGCCGCC 1 chr2R:14109823-14109943 ( 104) TGGCCGCC 1 chr2R:11775148-11775268 ( 44) TGGCCGGC 1 chr3L:19169138-19169258 ( 64) CCCCCCGC 1 chr2L:1094821-1094941 ( 59) TGCCCCCC 1 chr2L:11038945-11039065 ( 39) TGCCCCCC 1 chr2L:5233552-5233672 ( 80) TGCCCCCC 1 chr3R:22197774-22197894 ( 25) CGCCCCGC 1 chr2R:17083186-17083306 ( 11) TGCCCCGC 1 chr2L:11446084-11446204 ( 102) CCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 2.2e-001 -1097 112 -1097 93 -1097 144 143 -1097 -1097 93 181 -1097 -1097 244 -1097 -1097 -1097 244 -1097 -1097 -1097 158 128 -1097 -1097 144 143 -1097 -1097 244 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.2e-001 0.000000 0.400000 0.000000 0.600000 0.000000 0.500000 0.500000 0.000000 0.000000 0.350000 0.650000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.550000 0.450000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YSSCCSSC MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][GC]CC[CG][CG]C -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF ACGCACAC MEME-2 width = 8 sites = 19 llr = 189 E-value = 4.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7:2:9:9: pos.-specific C 3a2a1a:a probability G 1:6:::1: matrix T :::::::: bits 2.4 * * * * 2.2 * * * * 2.0 * * * * 1.7 * * * * Relative 1.5 * ***** Entropy 1.2 * ***** (14.4 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACGCACAC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21218902-21219022 55 6.63e-06 AGTAAAATAA ACGCACAC GTTGTCATTC chr2R:17274115-17274235 47 6.63e-06 AAAGACATAC ACGCACAC CAATGCAAAC chr2L:6826413-6826533 12 6.63e-06 TACACACACA ACGCACAC GCGTTATGAT chr2L:5233552-5233672 92 6.63e-06 CCCCCCAAAA ACGCACAC TTATACGCTC chr2L:4475459-4475579 72 6.63e-06 TTACCTTTTT ACGCACAC TTCATATATT chr2R:9283965-9284085 27 1.05e-05 TTTATTGGCG CCGCACAC AAGCACAAGC chr2R:14314457-14314577 12 1.05e-05 TCGTGTTTTA CCGCACAC ATAATACACT chr2R:11797327-11797447 69 1.05e-05 ACACTCCATA CCGCACAC CGTTAAACTG chr2L:11441132-11441252 3 1.05e-05 TG CCGCACAC GCACATAAAA chr3L:17896091-17896211 11 1.71e-05 GGCTTCTTTT ACCCACAC TTCCCTTTGC chr2L:10146885-10147005 91 1.71e-05 AATGTGTTTA ACCCACAC GCAGCGAACG chr2L:20935540-20935660 36 2.84e-05 TCAGCTCTGA acacacac agatacacac chr3L:19169138-19169258 23 2.84e-05 TAATGTAGAC ACACACAC GCATTCCAGA chr2L:5547522-5547642 62 2.84e-05 ACAAGCGAGT ACACACAC GAAAAACACA chr2R:16209726-16209846 20 2.84e-05 AAGATTTTCC ACACACAC TATTCACTAT chr3L:4293877-4293997 2 3.22e-05 C CCCCACAC AAACATTTCA chr3R:11688321-11688441 6 4.27e-05 TCATA GCGCACAC CTCAAACAAA chr2L:1094821-1094941 36 5.05e-05 CGACGAGCAG ACGCACGC ACTGTTTGCA chr3R:24139214-24139334 110 5.05e-05 AGACAGGCGA ACGCCCAC TTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21218902-21219022 6.6e-06 54_[+2]_58 chr2R:17274115-17274235 6.6e-06 46_[+2]_66 chr2L:6826413-6826533 6.6e-06 11_[+2]_101 chr2L:5233552-5233672 6.6e-06 91_[+2]_21 chr2L:4475459-4475579 6.6e-06 71_[+2]_41 chr2R:9283965-9284085 1e-05 26_[+2]_86 chr2R:14314457-14314577 1e-05 11_[+2]_101 chr2R:11797327-11797447 1e-05 68_[+2]_44 chr2L:11441132-11441252 1e-05 2_[+2]_110 chr3L:17896091-17896211 1.7e-05 10_[+2]_102 chr2L:10146885-10147005 1.7e-05 90_[+2]_22 chr2L:20935540-20935660 2.8e-05 35_[+2]_77 chr3L:19169138-19169258 2.8e-05 22_[+2]_90 chr2L:5547522-5547642 2.8e-05 61_[+2]_51 chr2R:16209726-16209846 2.8e-05 19_[+2]_93 chr3L:4293877-4293997 3.2e-05 1_[+2]_111 chr3R:11688321-11688441 4.3e-05 5_[+2]_107 chr2L:1094821-1094941 5e-05 35_[+2]_77 chr3R:24139214-24139334 5e-05 109_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACGCACAC width=8 seqs=19 chr2L:21218902-21219022 ( 55) ACGCACAC 1 chr2R:17274115-17274235 ( 47) ACGCACAC 1 chr2L:6826413-6826533 ( 12) ACGCACAC 1 chr2L:5233552-5233672 ( 92) ACGCACAC 1 chr2L:4475459-4475579 ( 72) ACGCACAC 1 chr2R:9283965-9284085 ( 27) CCGCACAC 1 chr2R:14314457-14314577 ( 12) CCGCACAC 1 chr2R:11797327-11797447 ( 69) CCGCACAC 1 chr2L:11441132-11441252 ( 3) CCGCACAC 1 chr3L:17896091-17896211 ( 11) ACCCACAC 1 chr2L:10146885-10147005 ( 91) ACCCACAC 1 chr2L:20935540-20935660 ( 36) ACACACAC 1 chr3L:19169138-19169258 ( 23) ACACACAC 1 chr2L:5547522-5547642 ( 62) ACACACAC 1 chr2R:16209726-16209846 ( 20) ACACACAC 1 chr3L:4293877-4293997 ( 2) CCCCACAC 1 chr3R:11688321-11688441 ( 6) GCGCACAC 1 chr2L:1094821-1094941 ( 36) ACGCACGC 1 chr3R:24139214-24139334 ( 110) ACGCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 4.0e-001 112 52 -181 -1089 -1089 244 -1089 -1089 -58 -22 177 -1089 -1089 244 -1089 -1089 159 -180 -1089 -1089 -1089 244 -1089 -1089 159 -1089 -181 -1089 -1089 244 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.0e-001 0.684211 0.263158 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 0.210526 0.157895 0.631579 0.000000 0.000000 1.000000 0.000000 0.000000 0.947368 0.052632 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.947368 0.000000 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACGCACAC MEME-2 regular expression -------------------------------------------------------------------------------- [AC]C[GA]CACAC -------------------------------------------------------------------------------- Time 13.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGCGC MEME-3 width = 8 sites = 15 llr = 155 E-value = 7.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:1:::1: pos.-specific C :1:::819 probability G 898aa281 matrix T ::1::::: bits 2.4 ** 2.2 * ** 2.0 * ** * 1.7 * *** * Relative 1.5 ******** Entropy 1.2 ******** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCGC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17963834-17963954 50 1.36e-06 GACAAACAAA GGGGGCGC ACTCACAAAT chr3L:3691754-3691874 22 2.72e-06 TATTCTGGTT GGGGGGGC ATTAGCAGCT chr3L:7938633-7938753 64 2.72e-06 GTCGATTGTT GGGGGGGC TGCTACTGGT chr3L:9125249-9125369 90 4.07e-06 TTCCCGATTT GGGGGCCC CCAactgcgc chr2R:6153241-6153361 12 5.44e-06 GAGTCCACCC GGGGGCGG TATTTATTAT chr3L:7962491-7962611 31 5.44e-06 GGGAGAGGAA GGGGGCGG GCCTCTGTTG chr3R:4989267-4989387 80 7.75e-06 AATACACCGA AGGGGCGC AGCGAAAGAA chr3R:19568789-19568909 85 7.75e-06 AAAGCCATAG AGGGGCGC AGAAGTATCT chr2L:11444295-11444415 58 7.75e-06 AGATCGCAAA AGGGGCGC GGGGAAATTA chr2L:14699743-14699863 111 1.01e-05 GCACTGCAGT GGTGGCGC AA chrX:6253840-6253960 30 1.01e-05 CCAAACGCTA GGTGGCGC CAGGGGAGTG chr3R:14748797-14748917 16 1.14e-05 TTACATCTAA GCGGGCGC CCTAAGTGCC chr3L:10741332-10741452 99 1.60e-05 GTTCAAAAAA GGGGGCAC TTTCAATGGG chr2R:9494413-9494533 68 1.60e-05 TGTGACAGTC GGAGGCGC TTTATCATAA chr3R:21127777-21127897 2 1.74e-05 C GGGGGGCC ACTCTCCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17963834-17963954 1.4e-06 49_[+3]_63 chr3L:3691754-3691874 2.7e-06 21_[+3]_91 chr3L:7938633-7938753 2.7e-06 63_[+3]_49 chr3L:9125249-9125369 4.1e-06 89_[+3]_23 chr2R:6153241-6153361 5.4e-06 11_[+3]_101 chr3L:7962491-7962611 5.4e-06 30_[+3]_82 chr3R:4989267-4989387 7.7e-06 79_[+3]_33 chr3R:19568789-19568909 7.7e-06 84_[+3]_28 chr2L:11444295-11444415 7.7e-06 57_[+3]_55 chr2L:14699743-14699863 1e-05 110_[+3]_2 chrX:6253840-6253960 1e-05 29_[+3]_83 chr3R:14748797-14748917 1.1e-05 15_[+3]_97 chr3L:10741332-10741452 1.6e-05 98_[+3]_14 chr2R:9494413-9494533 1.6e-05 67_[+3]_45 chr3R:21127777-21127897 1.7e-05 1_[+3]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGCGC width=8 seqs=15 chr3L:17963834-17963954 ( 50) GGGGGCGC 1 chr3L:3691754-3691874 ( 22) GGGGGGGC 1 chr3L:7938633-7938753 ( 64) GGGGGGGC 1 chr3L:9125249-9125369 ( 90) GGGGGCCC 1 chr2R:6153241-6153361 ( 12) GGGGGCGG 1 chr3L:7962491-7962611 ( 31) GGGGGCGG 1 chr3R:4989267-4989387 ( 80) AGGGGCGC 1 chr3R:19568789-19568909 ( 85) AGGGGCGC 1 chr2L:11444295-11444415 ( 58) AGGGGCGC 1 chr2L:14699743-14699863 ( 111) GGTGGCGC 1 chrX:6253840-6253960 ( 30) GGTGGCGC 1 chr3R:14748797-14748917 ( 16) GCGGGCGC 1 chr3L:10741332-10741452 ( 99) GGGGGCAC 1 chr2R:9494413-9494533 ( 68) GGAGGCGC 1 chr3R:21127777-21127897 ( 2) GGGGGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 7.6e-001 -66 -1055 211 -1055 -1055 -146 233 -1055 -224 -1055 211 -124 -1055 -1055 243 -1055 -1055 -1055 243 -1055 -1055 212 11 -1055 -224 -46 211 -1055 -1055 224 -48 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 7.6e-001 0.200000 0.000000 0.800000 0.000000 0.000000 0.066667 0.933333 0.000000 0.066667 0.000000 0.800000 0.133333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.066667 0.133333 0.800000 0.000000 0.000000 0.866667 0.133333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- [GA]GGGG[CG]GC -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** MOTIF TGSSCCAT MEME-4 width = 8 sites = 20 llr = 187 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::9: pos.-specific C ::46a921 probability G :a65:1:2 matrix T a::::::8 bits 2.4 * * 2.2 * * 2.0 * ** 1.7 ** ** Relative 1.5 ****** Entropy 1.2 ******* (13.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCCAT consensus CG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11468138-11468258 82 6.71e-06 AAAATGCAAA TGGCCCAT AGAAGGCGAT chr2L:11736133-11736253 63 1.34e-05 TGATAAAACC TGGGCCAT AAAAGATAAC chr3R:21163425-21163545 13 1.34e-05 TTGGCACAAC TGGGCCAT AAACTATAAA chr2R:14485933-14486053 88 1.34e-05 AGATGTGTGA TGGGCCAT TACAAGGCTA chr3L:15999436-15999556 45 2.01e-05 ATTGCCCACA TGCCCCAT ACACACAATT chr3L:17971657-17971777 1 2.01e-05 . TGCCCCAT AGATTCCGAG chr2L:6789549-6789669 105 2.01e-05 GTATGTCATA TGCCCCAT CTGATAAT chr3R:5016456-5016576 23 2.68e-05 TGTTAATGTC TGCGCCAT TATTTGATTT chr2R:11901831-11901951 8 2.68e-05 CTTTATG TGCGCCAT AAAACCATAA chr2L:12508823-12508943 36 2.68e-05 ACTTTTATTG TGCGCCAT AAACGAATGT chr3R:21871586-21871706 71 3.08e-05 CAAGGATTTG TGGCCCAG TGTTTGTGTC chrX:14593269-14593389 9 3.47e-05 AATGATTA TGGGCCAG CAGTGCGTAT chr3L:10334269-10334389 24 3.47e-05 ACCAAAGTTA TGGGCCAG CAGAGTCGTT chr3R:31127627-31127747 89 4.25e-05 TCTTGATGAC TGGCCCCT AATTTACTTT chr2L:11460680-11460800 111 4.25e-05 TTCACATTAT TGCCCCAG CC chr3L:13232921-13233041 100 5.04e-05 TACTTATTTA TGGGCCCT GAATGTTGGT chr2L:2168332-2168452 91 5.43e-05 ATAACAAATA TGCCCCCT CCGCAGATAA chr3R:5066641-5066761 5 6.67e-05 CCAG TGGCCCAC AATGTGAAGC chr3L:8705154-8705274 28 7.57e-05 AAACGATGAC TGGCCGAT GGTGAGTACG chr3L:10674446-10674566 65 7.57e-05 CATTTTTTAA TGGCCGAT TTTGAAGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11468138-11468258 6.7e-06 81_[+4]_31 chr2L:11736133-11736253 1.3e-05 62_[+4]_50 chr3R:21163425-21163545 1.3e-05 12_[+4]_100 chr2R:14485933-14486053 1.3e-05 87_[+4]_25 chr3L:15999436-15999556 2e-05 44_[+4]_68 chr3L:17971657-17971777 2e-05 [+4]_112 chr2L:6789549-6789669 2e-05 104_[+4]_8 chr3R:5016456-5016576 2.7e-05 22_[+4]_90 chr2R:11901831-11901951 2.7e-05 7_[+4]_105 chr2L:12508823-12508943 2.7e-05 35_[+4]_77 chr3R:21871586-21871706 3.1e-05 70_[+4]_42 chrX:14593269-14593389 3.5e-05 8_[+4]_104 chr3L:10334269-10334389 3.5e-05 23_[+4]_89 chr3R:31127627-31127747 4.3e-05 88_[+4]_24 chr2L:11460680-11460800 4.3e-05 110_[+4]_2 chr3L:13232921-13233041 5e-05 99_[+4]_13 chr2L:2168332-2168452 5.4e-05 90_[+4]_22 chr3R:5066641-5066761 6.7e-05 4_[+4]_108 chr3L:8705154-8705274 7.6e-05 27_[+4]_85 chr3L:10674446-10674566 7.6e-05 64_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGSSCCAT width=8 seqs=20 chr2L:11468138-11468258 ( 82) TGGCCCAT 1 chr2L:11736133-11736253 ( 63) TGGGCCAT 1 chr3R:21163425-21163545 ( 13) TGGGCCAT 1 chr2R:14485933-14486053 ( 88) TGGGCCAT 1 chr3L:15999436-15999556 ( 45) TGCCCCAT 1 chr3L:17971657-17971777 ( 1) TGCCCCAT 1 chr2L:6789549-6789669 ( 105) TGCCCCAT 1 chr3R:5016456-5016576 ( 23) TGCGCCAT 1 chr2R:11901831-11901951 ( 8) TGCGCCAT 1 chr2L:12508823-12508943 ( 36) TGCGCCAT 1 chr3R:21871586-21871706 ( 71) TGGCCCAG 1 chrX:14593269-14593389 ( 9) TGGGCCAG 1 chr3L:10334269-10334389 ( 24) TGGGCCAG 1 chr3R:31127627-31127747 ( 89) TGGCCCCT 1 chr2L:11460680-11460800 ( 111) TGCCCCAG 1 chr3L:13232921-13233041 ( 100) TGGGCCCT 1 chr2L:2168332-2168452 ( 91) TGCCCCCT 1 chr3R:5066641-5066761 ( 5) TGGCCCAC 1 chr3L:8705154-8705274 ( 28) TGGCCGAT 1 chr3L:10674446-10674566 ( 65) TGGCCGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 2.1e+003 -1097 -1097 -1097 166 -1097 -1097 243 -1097 -1097 112 169 -1097 -1097 158 128 -1097 -1097 244 -1097 -1097 -1097 229 -89 -1097 143 -29 -1097 -1097 -1097 -188 11 125 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.550000 0.450000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.850000 0.150000 0.000000 0.000000 0.000000 0.050000 0.200000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSSCCAT MEME-4 regular expression -------------------------------------------------------------------------------- TG[GC][CG]CCA[TG] -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCAG MEME-5 width = 8 sites = 18 llr = 174 E-value = 5.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a::9: pos.-specific C 8::::a:2 probability G 2:::::18 matrix T :aa:a::: bits 2.4 * 2.2 * 2.0 * 1.7 ****** * Relative 1.5 ****** * Entropy 1.2 ******** (13.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12876583-12876703 23 1.96e-05 TTTCAGCTGT CTTATCAG ATGAAAATGC chr2L:5547522-5547642 28 1.96e-05 GTACTTGCGG CTTATCAG CTGATTTGGA chr3R:15983637-15983757 45 1.96e-05 TTTAAATAGT CTTATCAG CAATGGCAAA chr3L:18817806-18817926 6 1.96e-05 GAGCT CTTATCAG CGGAGGTAAA chr2R:22549745-22549865 108 1.96e-05 CCAATCGAAT CTTATCAG TTCTC chr2L:5233552-5233672 109 1.96e-05 CTTATACGCT CTTATCAG CATA chr3L:4293877-4293997 59 1.96e-05 TTTGCGTTTC CTTATCAG TCGTTCCCAA chr3R:6433253-6433373 88 1.96e-05 TTTATTTACT CTTATCAG CTGAGAGTAA chr3R:14798719-14798839 109 1.96e-05 AATCCGGAGA CTTATCAG CTGC chr3L:5947190-5947310 43 1.96e-05 AAATTTGCTG CTTATCAG GCGCTTTATC chr3L:8699857-8699977 4 5.06e-05 GTT CTTATCAC AAGGAGCGTG chr2L:9389139-9389259 110 5.06e-05 GTTTCCACTT CTTATCAC CGG chrX:5992882-5993002 89 5.06e-05 ATTTTAAATG CTTATCGG GGCAAATGTA chr3R:21163425-21163545 78 5.06e-05 CGAGATCGTG CTTATCGG CCGGGTATTA chr2R:14217716-14217836 111 5.06e-05 AATTTCGGCG CTTATCAC TG chr3L:18994716-18994836 13 7.03e-05 AGCTGAACTC GTTATCAG TCAGCTAGGT chr2L:11740592-11740712 47 7.03e-05 GCCCAAAACG GTTATCAG AAGACAATGC chr3L:14552042-14552162 48 7.03e-05 GCTTTGATAA GTTATCAG CTGATTATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12876583-12876703 2e-05 22_[+5]_90 chr2L:5547522-5547642 2e-05 27_[+5]_85 chr3R:15983637-15983757 2e-05 44_[+5]_68 chr3L:18817806-18817926 2e-05 5_[+5]_107 chr2R:22549745-22549865 2e-05 107_[+5]_5 chr2L:5233552-5233672 2e-05 108_[+5]_4 chr3L:4293877-4293997 2e-05 58_[+5]_54 chr3R:6433253-6433373 2e-05 87_[+5]_25 chr3R:14798719-14798839 2e-05 108_[+5]_4 chr3L:5947190-5947310 2e-05 42_[+5]_70 chr3L:8699857-8699977 5.1e-05 3_[+5]_109 chr2L:9389139-9389259 5.1e-05 109_[+5]_3 chrX:5992882-5993002 5.1e-05 88_[+5]_24 chr3R:21163425-21163545 5.1e-05 77_[+5]_35 chr2R:14217716-14217836 5.1e-05 110_[+5]_2 chr3L:18994716-18994836 7e-05 12_[+5]_100 chr2L:11740592-11740712 7e-05 46_[+5]_66 chr3L:14552042-14552162 7e-05 47_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCAG width=8 seqs=18 chr2R:12876583-12876703 ( 23) CTTATCAG 1 chr2L:5547522-5547642 ( 28) CTTATCAG 1 chr3R:15983637-15983757 ( 45) CTTATCAG 1 chr3L:18817806-18817926 ( 6) CTTATCAG 1 chr2R:22549745-22549865 ( 108) CTTATCAG 1 chr2L:5233552-5233672 ( 109) CTTATCAG 1 chr3L:4293877-4293997 ( 59) CTTATCAG 1 chr3R:6433253-6433373 ( 88) CTTATCAG 1 chr3R:14798719-14798839 ( 109) CTTATCAG 1 chr3L:5947190-5947310 ( 43) CTTATCAG 1 chr3L:8699857-8699977 ( 4) CTTATCAC 1 chr2L:9389139-9389259 ( 110) CTTATCAC 1 chrX:5992882-5993002 ( 89) CTTATCGG 1 chr3R:21163425-21163545 ( 78) CTTATCGG 1 chr2R:14217716-14217836 ( 111) CTTATCAC 1 chr3L:18994716-18994836 ( 13) GTTATCAG 1 chr2L:11740592-11740712 ( 47) GTTATCAG 1 chr3L:14552042-14552162 ( 48) GTTATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 5.2e+002 -1081 218 -15 -1081 -1081 -1081 -1081 166 -1081 -1081 -1081 166 167 -1081 -1081 -1081 -1081 -1081 -1081 166 -1081 244 -1081 -1081 150 -1081 -74 -1081 -1081 -14 217 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.2e+002 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCAG MEME-5 regular expression -------------------------------------------------------------------------------- CTTATCAG -------------------------------------------------------------------------------- Time 32.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17646468-17646588 9.60e-01 120 chr2L:1201475-1201595 5.44e-01 120 chr2L:14025474-14025594 7.53e-01 120 chr2L:6819788-6819908 8.68e-01 120 chr3R:23534781-23534901 4.83e-01 120 chr2L:11441132-11441252 4.21e-04 2_[+2(1.05e-05)]_110 chr2R:14485933-14486053 4.43e-02 87_[+4(1.34e-05)]_25 chr3L:5947190-5947310 7.61e-02 42_[+5(1.96e-05)]_70 chr2L:11460680-11460800 5.68e-02 110_[+4(4.25e-05)]_2 chr2R:13560048-13560168 9.88e-01 120 chr3R:26655683-26655803 4.60e-01 120 chr2R:10136154-10136274 9.75e-01 120 chr2L:11468138-11468258 2.46e-03 81_[+4(6.71e-06)]_31 chr2L:6178281-6178401 3.46e-01 120 chr3L:7962491-7962611 1.93e-02 30_[+3(5.44e-06)]_82 chr2R:22542626-22542746 2.63e-01 120 chr3R:23460748-23460868 7.73e-02 120 chr2L:12508823-12508943 2.76e-02 35_[+4(2.68e-05)]_77 chr3R:24798724-24798844 9.73e-01 120 chr2L:20969848-20969968 7.16e-01 120 chr2R:19414712-19414832 6.19e-01 120 chr2L:12589175-12589295 1.93e-01 120 chr3R:8924254-8924374 3.53e-01 120 chr3R:22197774-22197894 8.25e-02 24_[+1(4.10e-05)]_88 chr3L:7938633-7938753 6.63e-03 63_[+3(2.72e-06)]_49 chr2L:11444295-11444415 1.08e-02 57_[+3(7.75e-06)]_55 chr3L:14552042-14552162 4.58e-01 47_[+5(7.03e-05)]_65 chr3L:1169805-1169925 3.30e-03 106_[+1(1.58e-05)]_6 chr3R:14798719-14798839 4.99e-02 108_[+5(1.96e-05)]_4 chr2L:11740592-11740712 3.57e-02 46_[+5(7.03e-05)]_66 chrX:14919011-14919131 7.64e-01 120 chr3R:24139214-24139334 1.01e-02 109_[+2(5.05e-05)]_3 chr2L:16714040-16714160 9.40e-01 120 chr2L:16857783-16857903 9.79e-01 120 chr3L:12675310-12675430 4.26e-01 120 chr3R:8807748-8807868 6.37e-02 120 chr3R:13986863-13986983 1.00e+00 120 chr2R:6532593-6532713 3.70e-02 85_[+1(1.58e-05)]_27 chr3L:14650509-14650629 8.70e-01 120 chr3L:8873247-8873367 1.83e-02 17_[+1(1.58e-05)]_95 chr3R:21871586-21871706 2.87e-02 70_[+4(3.08e-05)]_42 chr2L:5971356-5971476 1.21e-02 105_[+1(1.21e-05)]_7 chr2R:21194700-21194820 3.44e-01 120 chr3R:5066641-5066761 7.32e-04 4_[+4(6.67e-05)]_108 chr3R:11688321-11688441 2.21e-01 5_[+2(4.27e-05)]_107 chr2L:4475459-4475579 2.69e-03 71_[+2(6.63e-06)]_41 chr3R:26222413-26222533 9.31e-02 120 chr3R:5076949-5077069 4.99e-01 120 chr2R:22657686-22657806 5.59e-01 120 chr2R:6153241-6153361 3.37e-03 11_[+3(5.44e-06)]_101 chr3R:8208626-8208746 3.98e-01 120 chrX:10108238-10108358 9.17e-01 120 chr2L:3299194-3299314 5.57e-01 120 chrX:8685596-8685716 1.28e-01 120 chr2R:12009297-12009417 1.67e-04 27_[+1(1.21e-05)]_85 chr2R:14217716-14217836 1.28e-03 110_[+5(5.06e-05)]_2 chr2R:9404554-9404674 9.64e-02 120 chrX:8106733-8106853 8.20e-01 120 chr3L:18994716-18994836 4.43e-02 12_[+5(7.03e-05)]_100 chr2L:7352866-7352986 8.39e-01 120 chr3L:19165259-19165379 7.74e-01 120 chr2L:2171415-2171535 2.39e-01 120 chr2L:11446084-11446204 5.88e-05 23_[+4(2.68e-05)]_11_[+4(2.01e-05)]_\ 50_[+1(4.10e-05)]_12 chr2L:20975552-20975672 1.63e-01 120 chr3R:19568789-19568909 4.56e-03 84_[+3(7.75e-06)]_28 chr3L:878056-878176 8.37e-01 120 chr3R:4906215-4906335 9.16e-01 120 chr3R:31127627-31127747 4.71e-03 88_[+4(4.25e-05)]_24 chr2L:20069729-20069849 7.92e-01 120 chr2L:14403708-14403828 5.33e-01 120 chr2R:9494413-9494533 1.66e-02 67_[+3(1.60e-05)]_45 chr3L:11419631-11419751 2.97e-02 120 chr3L:17963834-17963954 5.14e-03 49_[+3(1.36e-06)]_29_[+3(8.76e-05)]_\ 26 chr3R:24571546-24571666 8.45e-01 120 chr3L:15704804-15704924 5.94e-02 120 chr2L:7284958-7285078 9.84e-01 120 chr3L:15252085-15252205 4.93e-02 120 chrX:6253840-6253960 3.77e-03 29_[+3(1.01e-05)]_83 chr3L:1742058-1742178 4.24e-01 120 chr2R:11901831-11901951 3.02e-02 7_[+4(2.68e-05)]_105 chr3R:6433253-6433373 4.44e-03 87_[+5(1.96e-05)]_25 chr2R:11426853-11426973 5.18e-01 120 chr2L:6789549-6789669 4.95e-03 34_[+5(7.03e-05)]_6_[+5(5.06e-05)]_\ 48_[+4(2.01e-05)]_8 chr2L:13886657-13886777 9.58e-01 120 chr3R:21163425-21163545 1.33e-04 12_[+4(1.34e-05)]_57_[+5(5.06e-05)]_\ 35 chrX:8206003-8206123 8.47e-01 120 chr3L:10334269-10334389 1.65e-02 23_[+4(3.47e-05)]_89 chr2L:9123687-9123807 9.61e-02 120 chr2L:6193275-6193395 1.43e-01 120 chrX:6092325-6092445 8.72e-01 120 chr2R:16289109-16289229 3.74e-01 120 chr2R:16161638-16161758 6.56e-02 120 chr2R:13563578-13563698 9.68e-01 120 chr2L:11447766-11447886 3.82e-01 120 chr3L:17971657-17971777 2.09e-02 [+4(2.01e-05)]_112 chr2R:16162622-16162742 1.93e-01 120 chr2R:11797327-11797447 1.05e-02 68_[+2(1.05e-05)]_44 chr3L:4293877-4293997 2.42e-03 1_[+2(3.22e-05)]_49_[+5(1.96e-05)]_\ 54 chr3L:20406381-20406501 5.02e-01 120 chr4:495971-496091 6.01e-01 120 chrX:17121702-17121822 9.75e-01 120 chr3L:13232921-13233041 8.91e-02 99_[+4(5.04e-05)]_13 chr3L:4720773-4720893 6.57e-01 120 chrX:5524340-5524460 1.17e-01 120 chr3R:6401060-6401180 6.22e-01 120 chr3L:887699-887819 2.37e-04 75_[+1(1.58e-05)]_37 chrX:5992882-5993002 2.57e-02 88_[+5(5.06e-05)]_24 chr2R:17083186-17083306 3.22e-02 10_[+1(4.46e-05)]_102 chr2R:16723761-16723881 5.84e-01 120 chr3L:18786190-18786310 9.63e-01 120 chr4:1199391-1199511 5.15e-01 120 chr2L:5233552-5233672 6.61e-07 79_[+1(4.10e-05)]_4_[+2(6.63e-06)]_\ 9_[+5(1.96e-05)]_4 chr2L:3572747-3572867 1.73e-05 14_[+1(1.21e-05)]_98 chr3L:6496909-6497029 8.83e-01 120 chr2L:6826413-6826533 2.27e-02 2_[+2(2.84e-05)]_1_[+2(6.63e-06)]_\ 101 chr3R:5080105-5080225 5.24e-01 120 chr2R:16849541-16849661 9.20e-01 120 chr2L:9389139-9389259 3.22e-02 109_[+5(5.06e-05)]_3 chr2R:18564417-18564537 9.96e-01 120 chr3R:18991930-18992050 1.94e-01 120 chr3L:20209190-20209310 1.19e-01 120 chr2L:14699743-14699863 6.24e-03 110_[+3(1.01e-05)]_2 chrX:14593269-14593389 6.60e-02 8_[+4(3.47e-05)]_104 chr3R:14477455-14477575 2.29e-01 120 chr3L:3786906-3787026 8.36e-01 120 chr3L:19181280-19181400 1.05e-01 120 chrX:3163086-3163206 9.21e-01 120 chr3R:13820564-13820684 1.81e-01 120 chrX:3742807-3742927 8.30e-02 120 chr3L:18795673-18795793 1.00e+00 120 chr3L:16486591-16486711 3.43e-01 120 chr3R:22780259-22780379 4.37e-01 120 chr3R:14296266-14296386 5.74e-01 120 chr2R:11775148-11775268 7.11e-03 43_[+1(3.03e-05)]_69 chr3R:10566891-10567011 4.20e-01 120 chr3L:1320508-1320628 5.58e-01 120 chr2L:11736133-11736253 3.42e-02 62_[+4(1.34e-05)]_50 chr3L:21065385-21065505 8.75e-01 120 chr2L:2168332-2168452 1.47e-03 90_[+4(5.43e-05)]_22 chr2L:8100943-8101063 4.41e-02 120 chr2R:16209726-16209846 1.66e-01 19_[+2(2.84e-05)]_93 chr3R:5016456-5016576 2.61e-02 22_[+4(2.68e-05)]_90 chrX:8837357-8837477 7.72e-01 120 chr2R:22549745-22549865 7.37e-02 107_[+5(1.96e-05)]_5 chrX:3427059-3427179 8.34e-01 120 chr3L:20187993-20188113 1.04e-01 120 chr3L:15823907-15824027 9.18e-01 120 chr3R:17620001-17620121 8.00e-01 120 chrX:6542489-6542609 7.98e-01 120 chr3L:19847074-19847194 2.85e-01 120 chr2R:24324006-24324126 6.28e-01 120 chr2L:7214984-7215104 5.91e-01 120 chr2R:17274115-17274235 7.77e-02 46_[+2(6.63e-06)]_66 chr2L:10146885-10147005 8.09e-03 90_[+2(1.71e-05)]_22 chr2L:7685446-7685566 1.01e-03 39_[+1(2.07e-05)]_3_[+5(8.18e-05)]_\ 62 chr3L:18817806-18817926 7.50e-02 5_[+5(1.96e-05)]_107 chrX:2653618-2653738 7.53e-01 120 chr3R:22631230-22631350 6.36e-03 120 chr3L:10674446-10674566 7.57e-02 64_[+4(7.57e-05)]_48 chr2R:14314457-14314577 8.05e-03 11_[+2(1.05e-05)]_101 chr2R:8603546-8603666 9.86e-01 120 chr3L:9692411-9692531 6.89e-01 120 chr3R:11663612-11663732 4.79e-01 120 chr2L:14230564-14230684 8.55e-01 120 chr2L:11038945-11039065 1.96e-04 38_[+1(4.10e-05)]_74 chr2R:22593198-22593318 8.40e-01 120 chr2R:24897760-24897880 9.95e-01 120 chr2R:17714539-17714659 9.32e-01 120 chr3L:7859862-7859982 8.80e-01 120 chr2L:14405196-14405316 5.12e-01 120 chr2R:25076905-25077025 9.84e-01 120 chr2L:14615996-14616116 9.39e-01 120 chr3R:15983637-15983757 1.32e-01 44_[+5(1.96e-05)]_68 chr2L:8938125-8938245 5.89e-01 120 chr2R:6023254-6023374 3.58e-01 120 chr3R:29717658-29717778 1.00e+00 120 chr2R:19725978-19726098 1.00e+00 120 chr3L:10741332-10741452 2.89e-02 98_[+3(1.60e-05)]_14 chr2L:13906127-13906247 9.54e-01 120 chr2R:21549055-21549175 7.25e-02 120 chr3R:23722104-23722224 9.77e-03 120 chr3R:16276322-16276442 3.74e-01 120 chr2L:14490177-14490297 5.24e-01 120 chr3L:3691754-3691874 4.71e-04 21_[+3(2.72e-06)]_91 chr2L:19370247-19370367 1.96e-01 120 chr3L:14274815-14274935 4.39e-03 42_[+1(2.07e-05)]_70 chr3R:4989267-4989387 6.51e-03 79_[+3(7.75e-06)]_33 chr2R:14109823-14109943 4.93e-04 103_[+1(2.66e-05)]_9 chr2L:425679-425799 2.57e-01 120 chr2L:7150901-7151021 1.00e+00 120 chr3L:16640649-16640769 8.35e-01 120 chr2L:3569934-3570054 9.95e-01 120 chr3L:15999436-15999556 3.90e-03 44_[+4(2.01e-05)]_68 chr3L:8699857-8699977 2.46e-04 3_[+5(5.06e-05)]_16_[+1(1.58e-05)]_\ 85 chr2L:5547522-5547642 5.27e-04 27_[+5(1.96e-05)]_26_[+2(2.84e-05)]_\ 51 chr2L:16819870-16819990 3.86e-01 120 chr3L:17047800-17047920 2.45e-01 120 chr3L:779066-779186 2.27e-01 120 chr3R:14482097-14482217 7.37e-01 120 chr3L:19169138-19169258 2.29e-03 20_[+2(2.84e-05)]_35_[+1(3.52e-05)]_\ 49 chr2R:16581803-16581923 4.39e-01 120 chr2L:12506847-12506967 1.31e-01 120 chr2R:7474752-7474872 5.78e-01 120 chr3R:14680507-14680627 3.11e-02 120 chrX:6700468-6700588 5.12e-02 5_[+2(6.55e-05)]_107 chr3L:8705154-8705274 6.93e-03 27_[+4(7.57e-05)]_85 chr3L:3240422-3240542 7.61e-01 120 chr2L:1094821-1094941 2.87e-04 35_[+2(5.05e-05)]_15_[+1(4.10e-05)]_\ 54 chr3L:960735-960855 9.85e-01 120 chr3L:6217964-6218084 1.64e-01 120 chr3L:4534091-4534211 9.07e-01 120 chr3L:4615211-4615331 6.64e-01 120 chr2R:9546541-9546661 5.91e-03 13_[+1(2.07e-05)]_99 chr3L:607058-607178 1.87e-02 120 chrX:5989563-5989683 6.11e-02 120 chr3L:17532332-17532452 9.94e-01 120 chr3R:21127777-21127897 3.20e-04 1_[+3(1.74e-05)]_13_[+2(9.10e-05)]_\ 90 chr2R:18350036-18350156 2.82e-01 120 chr3R:8180580-8180700 4.46e-01 120 chr3R:5031979-5032099 2.64e-01 120 chr3R:9759536-9759656 4.81e-01 120 chr3L:20922514-20922634 2.50e-02 26_[+3(8.76e-05)]_86 chr3R:15366983-15367103 9.99e-01 120 chr2R:18397621-18397741 7.88e-01 120 chr2R:12741212-12741332 8.88e-01 120 chr2L:1627731-1627851 8.87e-03 120 chr2L:10238242-10238362 9.33e-01 120 chr3L:16045409-16045529 9.95e-01 120 chr3R:17828761-17828881 3.73e-01 120 chr3R:22464647-22464767 1.63e-01 120 chr2R:9283965-9284085 6.40e-03 26_[+2(1.05e-05)]_86 chr2R:13431064-13431184 1.55e-01 120 chrX:5786603-5786723 5.93e-01 120 chr2R:22387680-22387800 6.09e-01 120 chr2L:7828925-7829045 2.81e-01 120 chr2R:17533821-17533941 3.37e-01 120 chr3R:14748797-14748917 5.11e-03 15_[+3(1.14e-05)]_97 chr3L:10391074-10391194 7.60e-01 120 chr3R:26185408-26185528 2.80e-01 120 chr3L:17896091-17896211 1.52e-02 10_[+2(1.71e-05)]_102 chr3L:329262-329382 2.28e-01 120 chr2R:12876583-12876703 1.01e-01 22_[+5(1.96e-05)]_90 chr3L:11273588-11273708 6.27e-01 120 chr2L:21218902-21219022 2.01e-03 54_[+2(6.63e-06)]_58 chr2L:20935540-20935660 1.34e-02 35_[+2(2.84e-05)]_77 chr2L:13839231-13839351 8.77e-01 120 chr2R:18400544-18400664 8.06e-01 120 chr3L:9125249-9125369 4.99e-04 89_[+3(4.07e-06)]_23 chr2L:9570764-9570884 2.77e-02 120 chr2L:21753516-21753636 7.73e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************