******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/sage.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:9237-9357 1.0000 120 chrM:14844-14964 1.0000 120 chrM:6446-6566 1.0000 120 chr3L:3249439-3249559 1.0000 120 chr2L:8899396-8899516 1.0000 120 chr2L:2888123-2888243 1.0000 120 chrX:15572095-15572215 1.0000 120 chr3R:8306267-8306387 1.0000 120 chr2R:15109609-15109729 1.0000 120 chr3L:13946143-13946263 1.0000 120 chr2R:12612078-12612198 1.0000 120 chrM:19279-19399 1.0000 120 chr3L:12734313-12734433 1.0000 120 chr2R:13025376-13025496 1.0000 120 chr2L:9920089-9920209 1.0000 120 chr3R:8860727-8860847 1.0000 120 chr3R:9338790-9338910 1.0000 120 chr3L:8158806-8158926 1.0000 120 chr2L:12006138-12006258 1.0000 120 chrX:9636774-9636894 1.0000 120 chr2R:11201809-11201929 1.0000 120 chr3R:5067377-5067497 1.0000 120 chr3L:3340906-3341026 1.0000 120 chr3R:21119228-21119348 1.0000 120 chr2L:3648278-3648398 1.0000 120 chr2R:11185065-11185185 1.0000 120 chr2R:6548958-6549078 1.0000 120 chr3R:9348667-9348787 1.0000 120 chr3L:8528759-8528879 1.0000 120 chr3L:14615382-14615502 1.0000 120 chr3L:8454154-8454274 1.0000 120 chr2R:13980086-13980206 1.0000 120 chr2R:19394680-19394800 1.0000 120 chr3R:23860297-23860417 1.0000 120 chr2L:22148865-22148985 1.0000 120 chr2L:20830219-20830339 1.0000 120 chr2L:4037080-4037200 1.0000 120 chr3L:18866089-18866209 1.0000 120 chr2R:6125547-6125667 1.0000 120 chrX:5031451-5031571 1.0000 120 chrX:6343469-6343589 1.0000 120 chr2R:10569706-10569826 1.0000 120 chr3R:10850390-10850510 1.0000 120 chr2L:3788400-3788520 1.0000 120 chr2L:12459360-12459480 1.0000 120 chr2R:23721818-23721938 1.0000 120 chr3L:12096629-12096749 1.0000 120 chr3R:14367939-14368059 1.0000 120 chr3L:6551044-6551164 1.0000 120 chr3L:20823549-20823669 1.0000 120 chr2R:16855382-16855502 1.0000 120 chr3R:8845061-8845181 1.0000 120 chr2L:18564155-18564275 1.0000 120 chrX:22487096-22487216 1.0000 120 chr3L:9969714-9969834 1.0000 120 chr3L:21524194-21524314 1.0000 120 chr2L:13837818-13837938 1.0000 120 chr2L:12479601-12479721 1.0000 120 chr3R:22133465-22133585 1.0000 120 chr3R:23343385-23343505 1.0000 120 chr3L:8825706-8825826 1.0000 120 chr3R:10101166-10101286 1.0000 120 chrM:16018-16138 1.0000 120 chr3L:2837518-2837638 1.0000 120 chr2L:71747-71867 1.0000 120 chr3R:17393406-17393526 1.0000 120 chrX:11153696-11153816 1.0000 120 chr2R:5700701-5700821 1.0000 120 chr4:205642-205762 1.0000 120 chr2R:11539334-11539454 1.0000 120 chrM:15474-15594 1.0000 120 chr3L:15208867-15208987 1.0000 120 chr3R:29049410-29049530 1.0000 120 chr3R:20547881-20548001 1.0000 120 chr3R:21607825-21607945 1.0000 120 chr4:659219-659339 1.0000 120 chr3L:2820440-2820560 1.0000 120 chr3R:11590471-11590591 1.0000 120 chr2R:17461795-17461915 1.0000 120 chrX:3451433-3451553 1.0000 120 chr3R:27133601-27133721 1.0000 120 chr3L:73208-73328 1.0000 120 chr3R:22726896-22727016 1.0000 120 chr3R:31808775-31808895 1.0000 120 chr3R:14024094-14024214 1.0000 120 chr2R:18705897-18706017 1.0000 120 chr2L:10269992-10270112 1.0000 120 chr3R:14736237-14736357 1.0000 120 chrX:6601294-6601414 1.0000 120 chr3L:19096211-19096331 1.0000 120 chrX:5941820-5941940 1.0000 120 chr2R:25009071-25009191 1.0000 120 chr3L:21062321-21062441 1.0000 120 chr2R:21553797-21553917 1.0000 120 chr3L:1088151-1088271 1.0000 120 chr3L:5367914-5368034 1.0000 120 chr2R:11394181-11394301 1.0000 120 chr3R:10512343-10512463 1.0000 120 chr3R:9418849-9418969 1.0000 120 chr3R:12398149-12398269 1.0000 120 chr2R:10100134-10100254 1.0000 120 chr2L:3171031-3171151 1.0000 120 chr3L:7369223-7369343 1.0000 120 chr2L:13367606-13367726 1.0000 120 chr3R:31945010-31945130 1.0000 120 chr2R:8083811-8083931 1.0000 120 chr3L:3417325-3417445 1.0000 120 chrX:16372071-16372191 1.0000 120 chr2L:19033464-19033584 1.0000 120 chrX:127677-127797 1.0000 120 chrX:8240502-8240622 1.0000 120 chr2L:5294127-5294247 1.0000 120 chr2R:24046201-24046321 1.0000 120 chr2L:4196014-4196134 1.0000 120 chr3R:5362574-5362694 1.0000 120 chr3L:8777609-8777729 1.0000 120 chrX:17298998-17299118 1.0000 120 chr2L:10426267-10426387 1.0000 120 chr2L:12448310-12448430 1.0000 120 chr3L:11382185-11382305 1.0000 120 chr3L:9364174-9364294 1.0000 120 chr3R:9702062-9702182 1.0000 120 chr3L:14241117-14241237 1.0000 120 chr3L:19292041-19292161 1.0000 120 chr2R:18401835-18401955 1.0000 120 chr2L:3356933-3357053 1.0000 120 chr3R:11984774-11984894 1.0000 120 chr3L:12745262-12745382 1.0000 120 chrX:12675383-12675503 1.0000 120 chr3L:16194570-16194690 1.0000 120 chr2R:14480521-14480641 1.0000 120 chr3R:26058213-26058333 1.0000 120 chr2L:8400315-8400435 1.0000 120 chr3L:2577677-2577797 1.0000 120 chr2R:21519008-21519128 1.0000 120 chrX:17078757-17078877 1.0000 120 chr2L:6099329-6099449 1.0000 120 chr2R:25285816-25285936 1.0000 120 chrX:11496519-11496639 1.0000 120 chr3R:14398004-14398124 1.0000 120 chr3L:19902603-19902723 1.0000 120 chr4:695965-696085 1.0000 120 chr3R:14259989-14260109 1.0000 120 chr2R:10531431-10531551 1.0000 120 chr3L:20197843-20197963 1.0000 120 chr3R:20534742-20534862 1.0000 120 chr2R:16335903-16336023 1.0000 120 chr2L:19424942-19425062 1.0000 120 chr3R:14711534-14711654 1.0000 120 chr3L:20436270-20436390 1.0000 120 chr3R:9886109-9886229 1.0000 120 chr3L:8058102-8058222 1.0000 120 chr2L:15368619-15368739 1.0000 120 chr3R:23869411-23869531 1.0000 120 chr3R:7076372-7076492 1.0000 120 chr3L:8058842-8058962 1.0000 120 chr2R:22180564-22180684 1.0000 120 chr2R:8444230-8444350 1.0000 120 chr2L:3338570-3338690 1.0000 120 chr3L:16984166-16984286 1.0000 120 chr2R:24137898-24138018 1.0000 120 chr3L:20199781-20199901 1.0000 120 chr3L:11623684-11623804 1.0000 120 chr2L:3858226-3858346 1.0000 120 chr3R:29787997-29788117 1.0000 120 chr2R:20319005-20319125 1.0000 120 chr3L:8369093-8369213 1.0000 120 chr3L:18014654-18014774 1.0000 120 chr2R:16711024-16711144 1.0000 120 chr3L:17962342-17962462 1.0000 120 chrX:3437628-3437748 1.0000 120 chr2R:22316612-22316732 1.0000 120 chr3R:10133709-10133829 1.0000 120 chr3R:31718332-31718452 1.0000 120 chr3L:22157778-22157898 1.0000 120 chr3L:16613232-16613352 1.0000 120 chr2L:10728901-10729021 1.0000 120 chr3L:3947398-3947518 1.0000 120 chrX:11922837-11922957 1.0000 120 chr2L:5209468-5209588 1.0000 120 chr3L:18800598-18800718 1.0000 120 chr3R:5821356-5821476 1.0000 120 chr3L:5277167-5277287 1.0000 120 chr3L:225361-225481 1.0000 120 chr2L:8426452-8426572 1.0000 120 chr3R:17685019-17685139 1.0000 120 chr3L:20827300-20827420 1.0000 120 chr2R:18658218-18658338 1.0000 120 chr3R:30389286-30389406 1.0000 120 chr3R:7107784-7107904 1.0000 120 chr3R:30387219-30387339 1.0000 120 chr3L:2636475-2636595 1.0000 120 chr3L:11322985-11323105 1.0000 120 chr2R:10026102-10026222 1.0000 120 chr3L:21887447-21887567 1.0000 120 chr3R:25493397-25493517 1.0000 120 chr3R:15834572-15834692 1.0000 120 chr3R:6433142-6433262 1.0000 120 chr2R:16831227-16831347 1.0000 120 chr2R:6144292-6144412 1.0000 120 chr3R:20592679-20592799 1.0000 120 chr3L:16709883-16710003 1.0000 120 chr3L:5627784-5627904 1.0000 120 chr3R:9344337-9344457 1.0000 120 chr3L:18001968-18002088 1.0000 120 chr3R:22365975-22366095 1.0000 120 chr3R:16316840-16316960 1.0000 120 chr3R:4761507-4761627 1.0000 120 chr2L:857174-857294 1.0000 120 chr2L:2009462-2009582 1.0000 120 chr3R:8357996-8358116 1.0000 120 chr3R:16482398-16482518 1.0000 120 chr3R:10767746-10767866 1.0000 120 chr2R:25214980-25215100 1.0000 120 chr2L:9671347-9671467 1.0000 120 chr2L:3449568-3449688 1.0000 120 chrX:11600996-11601116 1.0000 120 chr2R:18351102-18351222 1.0000 120 chrX:142094-142214 1.0000 120 chr3R:25651537-25651657 1.0000 120 chr3L:11788994-11789114 1.0000 120 chr3R:22042550-22042670 1.0000 120 chr3L:2833691-2833811 1.0000 120 chr2L:14334002-14334122 1.0000 120 chrX:3780339-3780459 1.0000 120 chr2R:6168482-6168602 1.0000 120 chr3L:12725882-12726002 1.0000 120 chr3L:15094040-15094160 1.0000 120 chr3R:15457789-15457909 1.0000 120 chr2L:13878326-13878446 1.0000 120 chr3L:7781832-7781952 1.0000 120 chr3R:14568894-14569014 1.0000 120 chr3L:1570225-1570345 1.0000 120 chr3R:24148931-24149051 1.0000 120 chr2R:14768701-14768821 1.0000 120 chr2R:17456316-17456436 1.0000 120 chr3R:25303991-25304111 1.0000 120 chr2R:24836767-24836887 1.0000 120 chr2R:7749741-7749861 1.0000 120 chr2R:8650088-8650208 1.0000 120 chrX:4931120-4931240 1.0000 120 chr3R:8115948-8116068 1.0000 120 chr2L:8004262-8004382 1.0000 120 chr2L:21866699-21866819 1.0000 120 chr2R:19414746-19414866 1.0000 120 chr3L:3909718-3909838 1.0000 120 chr2R:24541145-24541265 1.0000 120 chr3L:8825091-8825211 1.0000 120 chr3R:22424074-22424194 1.0000 120 chr3L:14789803-14789923 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_sage/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/sage.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.178 G 0.171 T 0.333 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.178 G 0.171 T 0.333 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCRSSSRR MEME-1 width = 8 sites = 81 llr = 598 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::52::46 pos.-specific C :a:357:1 probability G a:454353 matrix T ::1:2::: bits 2.5 ** 2.3 ** 2.0 ** 1.8 ** Relative 1.5 ** * Entropy 1.3 ** * (10.7 bits) 1.0 ** * ** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCCGA consensus GCGGAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16316840-16316960 83 2.36e-06 GCAAACAGAC GCGGCCGA AAGAGCCCGA chr3R:29787997-29788117 3 2.36e-06 AG GCGGCCGA GTTGAAAGTA chr2L:9920089-9920209 33 2.36e-06 TAATTAAACG GCGGCCGA TAGCAGTTGG chrX:11600996-11601116 15 4.62e-06 CAATGGGCCG GCGGGCGA AAACCGACAC chr3R:16482398-16482518 6 9.01e-06 ATTTA GCAGCCGG CTAAAAACTA chr3R:10133709-10133829 26 9.01e-06 GAGAGCGAGT GCAGCCGG TGGTTGTGAG chr2L:14334002-14334122 55 1.57e-05 CTTAAACTTG GCGCCCGA GTTCCTTTTT chrX:4931120-4931240 17 1.79e-05 TCAAAGGAAA GCGGCGGA GAAAAACTAA chrX:22487096-22487216 52 1.79e-05 CCTGAAAGCT GCGGCGGA TTGCCAAAAC chr3L:5627784-5627904 71 3.14e-05 TTGTTGAAGT GCGGCCAG CACCTTCTTT chr2R:10026102-10026222 15 3.14e-05 TCTCTCTCTC GCGGCCAG CTCTCTTGCG chr2L:10269992-10270112 72 3.14e-05 CTGTTTGTGT GCGGCCAA ACCAATACAT chr3L:19902603-19902723 6 3.56e-05 GTGGC GCAGCGGA GACAACCAAG chr2L:3338570-3338690 81 4.51e-05 CAATGTCCCC GCGGGCAG GCAAAAGTAA chr3R:14024094-14024214 41 4.51e-05 CGTGATATTT GCACGCGA AATTATCAAA chr2L:13837818-13837938 21 4.51e-05 AAACCGTTTC GCACGCGA CTTTCTTATT chr2R:12612078-12612198 15 4.51e-05 TTTTGATTTG GCGGGCAA TGTCTTCTGA chr2L:13878326-13878446 103 5.97e-05 AAATTGCGTT GCAGCCAA ATTTTTAATG chr2R:6168482-6168602 87 5.97e-05 TAATACAAGA GCAGGGGA AACAACAACG chr3R:22042550-22042670 58 5.97e-05 TGCTGTTGCA GCAGCCAA ATGAGCGAGG chr2R:18658218-18658338 45 5.97e-05 CTGAAATACC GCAGCCAA AAAGATACCA chr3R:9886109-9886229 11 5.97e-05 GTTCATTTTG GCAGGGGA ACAAACGCAT chr2R:25009071-25009191 113 5.97e-05 GCAATTACGG GCAGCCAG chr3R:29049410-29049530 1 5.97e-05 . GCAGGGGG GCCTACAGCT chr2R:8650088-8650208 58 7.67e-05 gagcgagaga gcgcggga gagagcgTCT chr3L:21887447-21887567 26 7.67e-05 TTTGAATTGT GCGCGGGG GCAACAATTT chr2R:10531431-10531551 52 7.67e-05 AATGAGCGAC GCAGGCAA AAACAAAAAA chr4:659219-659339 26 7.67e-05 TCAACTCTGG GCAGGCAG ACATTGACGG chr3R:10767746-10767866 47 8.97e-05 TAAATTTAGT GCGGTCGA ATAAACAGTT chr3L:3417325-3417445 13 8.97e-05 gtgtgtgcga gcggcgaa tgtatctgtg chr3L:7781832-7781952 110 1.01e-04 TTAAAAAGAC GCGCGCAG CTG chr3L:11788994-11789114 13 1.19e-04 ACAAACAAAA GCGGCGGC ATCAATTTGC chr3L:18001968-18002088 15 1.40e-04 TAATCGGTTG GCGAGCGG TTGAAGGCTT chrX:17298998-17299118 44 1.40e-04 GCGTGCGACG GCAGTCGA CTTAAATGGT chr3L:2837518-2837638 12 1.40e-04 GCTGTGCGAA GCGAGCGG GCTCTTCTTC chr3L:6551044-6551164 60 1.40e-04 AGAGTGCCGT GCAGCGAA TGGTCCATTA chr2L:2888123-2888243 92 1.40e-04 GCGGTTGAAG GCGAGCGA ATCGTCGAAT chr3R:7107784-7107904 94 1.60e-04 ATACACTCAC GCACGCAA ACACTCGCAA chr3R:9702062-9702182 74 1.60e-04 TCATAAACCT GCACGCAG AAAAACGATT chr2L:21866699-21866819 37 1.83e-04 CTTCGTCTGA GCGCTCGG CTCTTATTTT chr3L:3249439-3249559 94 1.83e-04 Cgccgactgc gctgccga ctgcgctgGC chr2R:14768701-14768821 85 1.98e-04 tctccctctc gcacgcgc tctcCGCAGC chr3R:15457789-15457909 82 1.98e-04 GCATATGTAT GCAAGCGA AATGCCAGTG chr2R:8444230-8444350 43 1.98e-04 GCTAAGAAGA GCAAGCGA CTTTCTCTCT chr2L:5294127-5294247 6 1.98e-04 ATTAC GCAAGCGG AGCTCGGGTT chr3L:9364174-9364294 7 2.16e-04 CGCAAA GCGACGGA AGTCCTGAAA chr2R:24137898-24138018 38 2.43e-04 TATTCAACAG GCGGTCAA CCTGTAGCTC chr3L:11382185-11382305 20 2.69e-04 CTGAGACCCA GCAGTGGA TGGGTGCACT chr2R:19414746-19414866 82 2.96e-04 TCGGTCTTGG GCTCCCGA TTTCCAGCTG chr3R:14568894-14569014 93 2.96e-04 GAATTGGTTA GCACGGAA CGTAAACAAA chr3R:30387219-30387339 18 2.96e-04 TCCCCAAAGC GCAACGGA AGTATCAATA chr3L:5277167-5277287 84 2.96e-04 ggtggaaaga gCACCGGC AAACAACAAG chr2R:18401835-18401955 70 2.96e-04 AACTAAAAGA GCACGGAA ATATTGGCTG chr3L:14241117-14241237 18 3.36e-04 ACGAACAGCA GCAGTCAA GAAGAGCAAG chr3R:27133601-27133721 101 3.36e-04 CATAATGATT GCAGCCCA AGAAGCATAA chrX:11153696-11153816 95 3.36e-04 GTGTTACCAG GCGCTGGA ATTCCAGCGA chr3R:14367939-14368059 8 3.36e-04 ATAATTG GCAGCCCA TTGTCTCCTC chr3R:22365975-22366095 23 3.69e-04 CGGGCGATTG GCAACCAG CTGACATATT chr2L:12459360-12459480 44 3.69e-04 GAGAGCATGA GCAAGGGG CATGGAAAGC chr3L:14615382-14615502 98 3.69e-04 CAAGTGTAAC GCAACCAG ACAAAATATA chr3R:24148931-24149051 32 4.05e-04 TGTCGCCAGC GCTGCCAG ATCCGGAAGA chr3R:5821356-5821476 56 4.05e-04 CATCACGAGT GCTGCCAA CTCGTTTTGG chr3L:3947398-3947518 66 4.05e-04 GGGTATTAGA GCTGCCAG ATCGTGAATA chr2L:10728901-10729021 62 4.05e-04 AATCGTCATT GCAGTCGC TACAGCTGTT chr3L:2577677-2577797 105 4.05e-04 ACTTTTGAAA GCTGCCAA TGCCAACT chr2R:10569706-10569826 65 4.05e-04 TTTTGCTCTC GCGCTCAA TTGTTTACTC chr3L:20827300-20827420 37 4.44e-04 CTTTGTAGCT GCACTGGG AGAAATGTCG chr3L:20197843-20197963 2 4.44e-04 C GCACGCAC ACACACAGAA chr3L:1088151-1088271 41 4.44e-04 AGAGTTATCT GCACTGGG GGAAAATATT chr3R:8845061-8845181 81 4.44e-04 GTCACTTGAA GCACGCAC ACTAACACCG chr3L:20823549-20823669 41 4.44e-04 aacttttcca gcactggg taagcgtagt chr2L:12006138-12006258 68 4.44e-04 ACTTGTTTTG GCGGCGCA TCTCAATGCC chr4:695965-696085 68 4.78e-04 GTGCGATTGA GCGACGAA GTAGAACTGA chr2L:2009462-2009582 97 5.10e-04 GTAATGGTTA GCACTCAG GACTCTGAAT chr2R:11539334-11539454 102 5.10e-04 CAGTATTTTT GCACTCAA AACTTTCCTT chr2R:18351102-18351222 43 5.41e-04 TACTTTGTCT GCGACGGC TGCTTATCAG chr3L:18014654-18014774 36 5.99e-04 TTTTTTCTCT GCTCGGGG TTTATTGTAT chr2L:12479601-12479721 24 5.99e-04 TTCAAACGCC GCAATCGA ACGCTCGTAA chr2R:23721818-23721938 59 5.99e-04 ccaactcgca gctcccag ttTGTTTACC chr3R:23343385-23343505 91 6.38e-04 ATGAGGGAGA GCGAGGGC GACAACAAAA chr2R:25285816-25285936 16 7.09e-04 attttttatg gcagcccc agaagaattt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16316840-16316960 2.4e-06 82_[+1]_30 chr3R:29787997-29788117 2.4e-06 2_[+1]_110 chr2L:9920089-9920209 2.4e-06 32_[+1]_80 chrX:11600996-11601116 4.6e-06 14_[+1]_98 chr3R:16482398-16482518 9e-06 5_[+1]_107 chr3R:10133709-10133829 9e-06 25_[+1]_87 chr2L:14334002-14334122 1.6e-05 54_[+1]_58 chrX:4931120-4931240 1.8e-05 16_[+1]_96 chrX:22487096-22487216 1.8e-05 51_[+1]_61 chr3L:5627784-5627904 3.1e-05 70_[+1]_42 chr2R:10026102-10026222 3.1e-05 14_[+1]_98 chr2L:10269992-10270112 3.1e-05 71_[+1]_41 chr3L:19902603-19902723 3.6e-05 5_[+1]_107 chr2L:3338570-3338690 4.5e-05 80_[+1]_32 chr3R:14024094-14024214 4.5e-05 40_[+1]_72 chr2L:13837818-13837938 4.5e-05 20_[+1]_92 chr2R:12612078-12612198 4.5e-05 14_[+1]_98 chr2L:13878326-13878446 6e-05 102_[+1]_10 chr2R:6168482-6168602 6e-05 86_[+1]_26 chr3R:22042550-22042670 6e-05 57_[+1]_55 chr2R:18658218-18658338 6e-05 44_[+1]_68 chr3R:9886109-9886229 6e-05 10_[+1]_102 chr2R:25009071-25009191 6e-05 112_[+1] chr3R:29049410-29049530 6e-05 [+1]_112 chr2R:8650088-8650208 7.7e-05 57_[+1]_55 chr3L:21887447-21887567 7.7e-05 25_[+1]_87 chr2R:10531431-10531551 7.7e-05 51_[+1]_61 chr4:659219-659339 7.7e-05 25_[+1]_87 chr3R:10767746-10767866 9e-05 46_[+1]_66 chr3L:3417325-3417445 9e-05 12_[+1]_100 chr3L:7781832-7781952 0.0001 109_[+1]_3 chr3L:11788994-11789114 0.00012 12_[+1]_100 chr3L:18001968-18002088 0.00014 14_[+1]_98 chrX:17298998-17299118 0.00014 43_[+1]_69 chr3L:2837518-2837638 0.00014 11_[+1]_101 chr3L:6551044-6551164 0.00014 59_[+1]_53 chr2L:2888123-2888243 0.00014 91_[+1]_21 chr3R:7107784-7107904 0.00016 93_[+1]_19 chr3R:9702062-9702182 0.00016 73_[+1]_39 chr2L:21866699-21866819 0.00018 36_[+1]_76 chr3L:3249439-3249559 0.00018 93_[+1]_19 chr2R:14768701-14768821 0.0002 84_[+1]_28 chr3R:15457789-15457909 0.0002 81_[+1]_31 chr2R:8444230-8444350 0.0002 42_[+1]_70 chr2L:5294127-5294247 0.0002 5_[+1]_107 chr3L:9364174-9364294 0.00022 6_[+1]_106 chr2R:24137898-24138018 0.00024 37_[+1]_75 chr3L:11382185-11382305 0.00027 19_[+1]_93 chr2R:19414746-19414866 0.0003 81_[+1]_31 chr3R:14568894-14569014 0.0003 92_[+1]_20 chr3R:30387219-30387339 0.0003 17_[+1]_95 chr3L:5277167-5277287 0.0003 83_[+1]_29 chr2R:18401835-18401955 0.0003 69_[+1]_43 chr3L:14241117-14241237 0.00034 17_[+1]_95 chr3R:27133601-27133721 0.00034 100_[+1]_12 chrX:11153696-11153816 0.00034 94_[+1]_18 chr3R:14367939-14368059 0.00034 7_[+1]_105 chr3R:22365975-22366095 0.00037 22_[+1]_90 chr2L:12459360-12459480 0.00037 43_[+1]_69 chr3L:14615382-14615502 0.00037 97_[+1]_15 chr3R:24148931-24149051 0.0004 31_[+1]_81 chr3R:5821356-5821476 0.0004 55_[+1]_57 chr3L:3947398-3947518 0.0004 65_[+1]_47 chr2L:10728901-10729021 0.0004 61_[+1]_51 chr3L:2577677-2577797 0.0004 104_[+1]_8 chr2R:10569706-10569826 0.0004 64_[+1]_48 chr3L:20827300-20827420 0.00044 36_[+1]_76 chr3L:20197843-20197963 0.00044 1_[+1]_111 chr3L:1088151-1088271 0.00044 40_[+1]_72 chr3R:8845061-8845181 0.00044 80_[+1]_32 chr3L:20823549-20823669 0.00044 40_[+1]_72 chr2L:12006138-12006258 0.00044 67_[+1]_45 chr4:695965-696085 0.00048 67_[+1]_45 chr2L:2009462-2009582 0.00051 96_[+1]_16 chr2R:11539334-11539454 0.00051 101_[+1]_11 chr2R:18351102-18351222 0.00054 42_[+1]_70 chr3L:18014654-18014774 0.0006 35_[+1]_77 chr2L:12479601-12479721 0.0006 23_[+1]_89 chr2R:23721818-23721938 0.0006 58_[+1]_54 chr3R:23343385-23343505 0.00064 90_[+1]_22 chr2R:25285816-25285936 0.00071 15_[+1]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRSSSRR width=8 seqs=81 chr3R:16316840-16316960 ( 83) GCGGCCGA 1 chr3R:29787997-29788117 ( 3) GCGGCCGA 1 chr2L:9920089-9920209 ( 33) GCGGCCGA 1 chrX:11600996-11601116 ( 15) GCGGGCGA 1 chr3R:16482398-16482518 ( 6) GCAGCCGG 1 chr3R:10133709-10133829 ( 26) GCAGCCGG 1 chr2L:14334002-14334122 ( 55) GCGCCCGA 1 chrX:4931120-4931240 ( 17) GCGGCGGA 1 chrX:22487096-22487216 ( 52) GCGGCGGA 1 chr3L:5627784-5627904 ( 71) GCGGCCAG 1 chr2R:10026102-10026222 ( 15) GCGGCCAG 1 chr2L:10269992-10270112 ( 72) GCGGCCAA 1 chr3L:19902603-19902723 ( 6) GCAGCGGA 1 chr2L:3338570-3338690 ( 81) GCGGGCAG 1 chr3R:14024094-14024214 ( 41) GCACGCGA 1 chr2L:13837818-13837938 ( 21) GCACGCGA 1 chr2R:12612078-12612198 ( 15) GCGGGCAA 1 chr2L:13878326-13878446 ( 103) GCAGCCAA 1 chr2R:6168482-6168602 ( 87) GCAGGGGA 1 chr3R:22042550-22042670 ( 58) GCAGCCAA 1 chr2R:18658218-18658338 ( 45) GCAGCCAA 1 chr3R:9886109-9886229 ( 11) GCAGGGGA 1 chr2R:25009071-25009191 ( 113) GCAGCCAG 1 chr3R:29049410-29049530 ( 1) GCAGGGGG 1 chr2R:8650088-8650208 ( 58) GCGCGGGA 1 chr3L:21887447-21887567 ( 26) GCGCGGGG 1 chr2R:10531431-10531551 ( 52) GCAGGCAA 1 chr4:659219-659339 ( 26) GCAGGCAG 1 chr3R:10767746-10767866 ( 47) GCGGTCGA 1 chr3L:3417325-3417445 ( 13) GCGGCGAA 1 chr3L:7781832-7781952 ( 110) GCGCGCAG 1 chr3L:11788994-11789114 ( 13) GCGGCGGC 1 chr3L:18001968-18002088 ( 15) GCGAGCGG 1 chrX:17298998-17299118 ( 44) GCAGTCGA 1 chr3L:2837518-2837638 ( 12) GCGAGCGG 1 chr3L:6551044-6551164 ( 60) GCAGCGAA 1 chr2L:2888123-2888243 ( 92) GCGAGCGA 1 chr3R:7107784-7107904 ( 94) GCACGCAA 1 chr3R:9702062-9702182 ( 74) GCACGCAG 1 chr2L:21866699-21866819 ( 37) GCGCTCGG 1 chr3L:3249439-3249559 ( 94) GCTGCCGA 1 chr2R:14768701-14768821 ( 85) GCACGCGC 1 chr3R:15457789-15457909 ( 82) GCAAGCGA 1 chr2R:8444230-8444350 ( 43) GCAAGCGA 1 chr2L:5294127-5294247 ( 6) GCAAGCGG 1 chr3L:9364174-9364294 ( 7) GCGACGGA 1 chr2R:24137898-24138018 ( 38) GCGGTCAA 1 chr3L:11382185-11382305 ( 20) GCAGTGGA 1 chr2R:19414746-19414866 ( 82) GCTCCCGA 1 chr3R:14568894-14569014 ( 93) GCACGGAA 1 chr3R:30387219-30387339 ( 18) GCAACGGA 1 chr3L:5277167-5277287 ( 84) GCACCGGC 1 chr2R:18401835-18401955 ( 70) GCACGGAA 1 chr3L:14241117-14241237 ( 18) GCAGTCAA 1 chr3R:27133601-27133721 ( 101) GCAGCCCA 1 chrX:11153696-11153816 ( 95) GCGCTGGA 1 chr3R:14367939-14368059 ( 8) GCAGCCCA 1 chr3R:22365975-22366095 ( 23) GCAACCAG 1 chr2L:12459360-12459480 ( 44) GCAAGGGG 1 chr3L:14615382-14615502 ( 98) GCAACCAG 1 chr3R:24148931-24149051 ( 32) GCTGCCAG 1 chr3R:5821356-5821476 ( 56) GCTGCCAA 1 chr3L:3947398-3947518 ( 66) GCTGCCAG 1 chr2L:10728901-10729021 ( 62) GCAGTCGC 1 chr3L:2577677-2577797 ( 105) GCTGCCAA 1 chr2R:10569706-10569826 ( 65) GCGCTCAA 1 chr3L:20827300-20827420 ( 37) GCACTGGG 1 chr3L:20197843-20197963 ( 2) GCACGCAC 1 chr3L:1088151-1088271 ( 41) GCACTGGG 1 chr3R:8845061-8845181 ( 81) GCACGCAC 1 chr3L:20823549-20823669 ( 41) GCACTGGG 1 chr2L:12006138-12006258 ( 68) GCGGCGCA 1 chr4:695965-696085 ( 68) GCGACGAA 1 chr2L:2009462-2009582 ( 97) GCACTCAG 1 chr2R:11539334-11539454 ( 102) GCACTCAA 1 chr2R:18351102-18351222 ( 43) GCGACGGC 1 chr3L:18014654-18014774 ( 36) GCTCGGGG 1 chr2L:12479601-12479721 ( 24) GCAATCGA 1 chr2R:23721818-23721938 ( 59) GCTCCCAG 1 chr3R:23343385-23343505 ( 91) GCGAGGGC 1 chr2R:25285816-25285936 ( 16) GCAGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 1.9e-005 -1298 -1298 254 -1298 -1298 249 -1298 -1298 74 -1298 111 -175 -78 80 156 -1298 -1298 136 106 -85 -1298 191 96 -1298 36 -185 166 -1298 84 -68 91 -1298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.9e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.530864 0.000000 0.370370 0.098765 0.185185 0.308642 0.506173 0.000000 0.000000 0.456790 0.358025 0.185185 0.000000 0.666667 0.333333 0.000000 0.407407 0.049383 0.543210 0.000000 0.567901 0.111111 0.320988 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSSSRR MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG][GC][CG][CG][GA][AG] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTK MEME-2 width = 8 sites = 23 llr = 224 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::1: pos.-specific C a::a:111 probability G ::a::913 matrix T ::::a:75 bits 2.5 * ** 2.3 * ** 2.0 * ** * 1.8 **** * Relative 1.5 ****** Entropy 1.3 ****** (14.0 bits) 1.0 ****** 0.8 ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCTGTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4761507-4761627 69 5.59e-06 tGACTGCCAG CAGCTGTG CACATACCGT chr3R:25493397-25493517 33 5.59e-06 TAACAAAAAT CAGCTGTG CGTAGGTGTG chr3R:14259989-14260109 2 5.59e-06 A CAGCTGTG CCACCAGTGC chr2L:9920089-9920209 90 5.59e-06 ACTAACTTAA CAGCTGTG TAGATAAGAA chr3R:8306267-8306387 113 5.59e-06 TCGCGCTTAA CAGCTGTG chr2R:19414746-19414866 94 1.65e-05 TCCCGATTTC CAGCTGTT TCCGTGGTGT chr2L:8004262-8004382 55 1.65e-05 ACTAAATGAA CAGCTGTT CCGTTAAACG chr2R:18658218-18658338 65 1.65e-05 AGATACCAAA CAGCTGTT TGACGCACAG chr2L:10728901-10729021 72 1.65e-05 GCAGTCGCTA CAGCTGTT TGGTGTTTTA chr3L:11623684-11623804 38 1.65e-05 CGATTCCACT CAGCTGTT AACCGCTTAT chr2L:13367606-13367726 20 1.65e-05 ATTTTGTAAA CAGCTGTT TCGGCGTCGG chr2R:11394181-11394301 109 1.65e-05 TTAACTTTTC CAGCTGTT AGAA chr2L:10269992-10270112 59 1.65e-05 ATCTAAAATC CAGCTGTT TGTGTGCGGC chrX:15572095-15572215 24 1.65e-05 TTATTTCAAT CAGCTGTT TACCAGTGTT chr3R:24148931-24149051 18 2.23e-05 AAGGCAAAAT CAGCTGTC GCCAGCGCTG chr3L:16984166-16984286 57 2.81e-05 AATCTTCCTA CAGCTGGG CTATATAAAT chr3L:16709883-16710003 34 3.95e-05 TTCATTTCGC CAGCTGCT GCTAATTTCG chr3L:11382185-11382305 7 4.49e-05 GGATGC CAGCTGAG ACCCAGCAGT chr3R:20592679-20592799 13 6.11e-05 TTTTATTTAA CAGCTCTG TTTGGCTAAT chr3L:8158806-8158926 101 6.11e-05 ATATGTTTGC CAGCTGAT TGCTGTCAAG chr2R:22180564-22180684 28 6.72e-05 accaaccaac caGCTGGC TGGTAAACAG chr2R:24046201-24046321 67 6.72e-05 TCCATTTTTC CAGCTGCC ACTTTGGAGC chr2L:12479601-12479721 87 7.85e-05 TTTTTTGCCT CAGCTCTT CGTGCTAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4761507-4761627 5.6e-06 68_[+2]_44 chr3R:25493397-25493517 5.6e-06 32_[+2]_80 chr3R:14259989-14260109 5.6e-06 1_[+2]_111 chr2L:9920089-9920209 5.6e-06 89_[+2]_23 chr3R:8306267-8306387 5.6e-06 112_[+2] chr2R:19414746-19414866 1.6e-05 93_[+2]_19 chr2L:8004262-8004382 1.6e-05 54_[+2]_58 chr2R:18658218-18658338 1.6e-05 64_[+2]_48 chr2L:10728901-10729021 1.6e-05 71_[+2]_41 chr3L:11623684-11623804 1.6e-05 37_[+2]_75 chr2L:13367606-13367726 1.6e-05 19_[+2]_93 chr2R:11394181-11394301 1.6e-05 108_[+2]_4 chr2L:10269992-10270112 1.6e-05 58_[+2]_54 chrX:15572095-15572215 1.6e-05 23_[+2]_89 chr3R:24148931-24149051 2.2e-05 17_[+2]_95 chr3L:16984166-16984286 2.8e-05 56_[+2]_56 chr3L:16709883-16710003 4e-05 33_[+2]_79 chr3L:11382185-11382305 4.5e-05 6_[+2]_106 chr3R:20592679-20592799 6.1e-05 12_[+2]_100 chr3L:8158806-8158926 6.1e-05 100_[+2]_12 chr2R:22180564-22180684 6.7e-05 27_[+2]_85 chr2R:24046201-24046321 6.7e-05 66_[+2]_46 chr2L:12479601-12479721 7.8e-05 86_[+2]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTK width=8 seqs=23 chr3R:4761507-4761627 ( 69) CAGCTGTG 1 chr3R:25493397-25493517 ( 33) CAGCTGTG 1 chr3R:14259989-14260109 ( 2) CAGCTGTG 1 chr2L:9920089-9920209 ( 90) CAGCTGTG 1 chr3R:8306267-8306387 ( 113) CAGCTGTG 1 chr2R:19414746-19414866 ( 94) CAGCTGTT 1 chr2L:8004262-8004382 ( 55) CAGCTGTT 1 chr2R:18658218-18658338 ( 65) CAGCTGTT 1 chr2L:10728901-10729021 ( 72) CAGCTGTT 1 chr3L:11623684-11623804 ( 38) CAGCTGTT 1 chr2L:13367606-13367726 ( 20) CAGCTGTT 1 chr2R:11394181-11394301 ( 109) CAGCTGTT 1 chr2L:10269992-10270112 ( 59) CAGCTGTT 1 chrX:15572095-15572215 ( 24) CAGCTGTT 1 chr3R:24148931-24149051 ( 18) CAGCTGTC 1 chr3L:16984166-16984286 ( 57) CAGCTGGG 1 chr3L:16709883-16710003 ( 34) CAGCTGCT 1 chr3L:11382185-11382305 ( 7) CAGCTGAG 1 chr3R:20592679-20592799 ( 13) CAGCTCTG 1 chr3L:8158806-8158926 ( 101) CAGCTGAT 1 chr2R:22180564-22180684 ( 28) CAGCTGGC 1 chr2R:24046201-24046321 ( 67) CAGCTGCC 1 chr2L:12479601-12479721 ( 87) CAGCTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.86794 E= 2.6e-003 -1117 249 -1117 -1117 165 -1117 -1117 -1117 -1117 -1117 254 -1117 -1117 249 -1117 -1117 -1117 -1117 -1117 158 -1117 -103 241 -1117 -187 -103 -98 115 -1117 -45 102 65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.6e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.086957 0.913043 0.000000 0.086957 0.086957 0.086957 0.739130 0.000000 0.130435 0.347826 0.521739 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTK MEME-2 regular expression -------------------------------------------------------------------------------- CAGCTGT[TG] -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-3 width = 8 sites = 21 llr = 200 E-value = 4.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1:::1 pos.-specific C 1::::::: probability G :9:9:a19 matrix T 91a:a:9: bits 2.5 * 2.3 * 2.0 * * * 1.8 * * * * Relative 1.5 * *** * Entropy 1.3 ******** (13.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16709883-16710003 84 1.05e-05 TAAGCGTAAG TGTGTGTG TACGTGTGTG chr3L:16613232-16613352 113 1.05e-05 atgtgtgtag tgtgtgtg chr3L:8369093-8369213 25 1.05e-05 ttttactttg tgtgtgtg tttttttttt chr2R:24046201-24046321 15 1.05e-05 GAAAATCCAA TGTGTGTG CATTTCTCTT chr3L:3417325-3417445 46 1.05e-05 cggtgctgcg tgtgtgtg cgtCGTTGTC chrX:6601294-6601414 95 1.05e-05 TCGCCTAAGC tgtgtgtg tgtgtgtttg chr3R:31808775-31808895 53 1.05e-05 GTGGAATGGA TGTGTGTG TATATAATAA chr2R:17461795-17461915 12 1.05e-05 AAATATACTG TGTGTGTG CTGGTTGTTG chr2L:8899396-8899516 111 1.05e-05 tgtgcctttg tgtgtgtg tg chr3R:25651537-25651657 38 2.15e-05 AATTAGTTTT TGTGTGGG ATCTAATCAC chr3L:2577677-2577797 23 2.15e-05 CCACTTCAGT TGTGTGGG AGGTTTCAAT chr3L:2837518-2837638 45 2.15e-05 TTTTCCATTT CGTGTGTG CCCCTTTTTA chrX:22487096-22487216 95 2.15e-05 AGCGAGTAGT CGTGTGTG CGTGTGATGG chr3R:14568894-14569014 60 4.67e-05 atgtatagta tGTGTGTA ATTGCCTAGC chr2R:10026102-10026222 29 4.67e-05 CCAGCTCTCT TGCGTGTG GGTGTAAAAA chr3L:19292041-19292161 61 4.67e-05 TATTAATAAT TGTGTGTA TTTTTGCCAG chr3L:12096629-12096749 90 4.67e-05 TACATATGTA TGTGTGTA TATAAATTTG chr2R:24541145-24541265 98 8.67e-05 CGAGAATAAG TGTATGTG ATGATCGAGA chr2L:8426452-8426572 72 8.67e-05 TTTAAAAATT TTTGTGTG AATCAGTTAT chrX:127677-127797 21 8.67e-05 TGCAAATGTA TTTGTGTG TTCGCTTTGA chr3R:11590471-11590591 61 8.67e-05 aatgtatgta tgtatgtG TTTTCGTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16709883-16710003 1.1e-05 83_[+3]_29 chr3L:16613232-16613352 1.1e-05 112_[+3] chr3L:8369093-8369213 1.1e-05 24_[+3]_88 chr2R:24046201-24046321 1.1e-05 14_[+3]_98 chr3L:3417325-3417445 1.1e-05 45_[+3]_67 chrX:6601294-6601414 1.1e-05 94_[+3]_18 chr3R:31808775-31808895 1.1e-05 52_[+3]_60 chr2R:17461795-17461915 1.1e-05 11_[+3]_101 chr2L:8899396-8899516 1.1e-05 110_[+3]_2 chr3R:25651537-25651657 2.2e-05 37_[+3]_75 chr3L:2577677-2577797 2.2e-05 22_[+3]_90 chr3L:2837518-2837638 2.2e-05 44_[+3]_68 chrX:22487096-22487216 2.2e-05 94_[+3]_18 chr3R:14568894-14569014 4.7e-05 59_[+3]_53 chr2R:10026102-10026222 4.7e-05 28_[+3]_84 chr3L:19292041-19292161 4.7e-05 60_[+3]_52 chr3L:12096629-12096749 4.7e-05 89_[+3]_23 chr2R:24541145-24541265 8.7e-05 97_[+3]_15 chr2L:8426452-8426572 8.7e-05 71_[+3]_41 chrX:127677-127797 8.7e-05 20_[+3]_92 chr3R:11590471-11590591 8.7e-05 60_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=21 chr3L:16709883-16710003 ( 84) TGTGTGTG 1 chr3L:16613232-16613352 ( 113) TGTGTGTG 1 chr3L:8369093-8369213 ( 25) TGTGTGTG 1 chr2R:24046201-24046321 ( 15) TGTGTGTG 1 chr3L:3417325-3417445 ( 46) TGTGTGTG 1 chrX:6601294-6601414 ( 95) TGTGTGTG 1 chr3R:31808775-31808895 ( 53) TGTGTGTG 1 chr2R:17461795-17461915 ( 12) TGTGTGTG 1 chr2L:8899396-8899516 ( 111) TGTGTGTG 1 chr3R:25651537-25651657 ( 38) TGTGTGGG 1 chr3L:2577677-2577797 ( 23) TGTGTGGG 1 chr3L:2837518-2837638 ( 45) CGTGTGTG 1 chrX:22487096-22487216 ( 95) CGTGTGTG 1 chr3R:14568894-14569014 ( 60) TGTGTGTA 1 chr2R:10026102-10026222 ( 29) TGCGTGTG 1 chr3L:19292041-19292161 ( 61) TGTGTGTA 1 chr3L:12096629-12096749 ( 90) TGTGTGTA 1 chr2R:24541145-24541265 ( 98) TGTATGTG 1 chr2L:8426452-8426572 ( 72) TTTGTGTG 1 chrX:127677-127797 ( 21) TTTGTGTG 1 chr3R:11590471-11590591 ( 61) TGTATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 4.2e+000 -1104 -90 -1104 144 -1104 -1104 240 -181 -1104 -190 -1104 151 -174 -1104 240 -1104 -1104 -1104 -1104 158 -1104 -1104 254 -1104 -1104 -1104 -85 144 -115 -1104 232 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.2e+000 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 0.904762 0.095238 0.000000 0.047619 0.000000 0.952381 0.095238 0.000000 0.904762 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.095238 0.904762 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF KCWTKCGS MEME-4 width = 8 sites = 24 llr = 221 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C :a:::a:6 probability G 6:::4:a4 matrix T 4:6a6::: bits 2.5 * ** 2.3 * ** 2.0 * ** 1.8 * ** Relative 1.5 * * *** Entropy 1.3 ** * *** (13.3 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTTTCGC consensus T A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14768701-14768821 101 3.13e-06 gctctcCGCA GCTTGCGC AGAAAGTTTT chr3L:20197843-20197963 33 3.13e-06 GCTCTCTTTT GCTTGCGC AATACATAAA chr3L:2820440-2820560 56 9.22e-06 ACTTAATGAC GCTTTCGC TGTTGATGTT chr3R:29049410-29049530 16 1.22e-05 GGGGCCTACA GCTTGCGG TTAACATGTT chr2L:3449568-3449688 93 1.81e-05 AATACTGAAA GCTTTCGG TCAGCTTTCC chr3L:17962342-17962462 77 1.81e-05 GCATATGCAA GCTTTCGG CAAGCTTTTT chr3L:11623684-11623804 92 1.81e-05 ATTCTAAAAA GCTTTCGG AGGACAGGGC chr3R:22133465-22133585 20 2.11e-05 CAAGAGAGAC GCATGCGC ATCAATTGTA chr2L:857174-857294 109 2.69e-05 CGAGCTCCTG GCATTCGC ACCT chr2R:10569706-10569826 23 2.69e-05 TATTTATTGT GCATTCGC CTTTGGTCGC chr3R:8306267-8306387 99 2.69e-05 CTAACAGTCT GCATTCGC GCTTAACAGC chr2L:2888123-2888243 78 2.97e-05 AGTTCGAGTT GCATGCGG TTGAAGGCGA chr3L:2837518-2837638 80 3.58e-05 TATTTTCGCT TCTTGCGC ATCGAAGAAG chr2R:6125547-6125667 78 4.14e-05 CGTATTTATC GCATTCGG Aatatactac chrX:3780339-3780459 25 5.33e-05 CCTTCTTCTT TCTTTCGC TCCGCTCATT chr2R:16831227-16831347 95 5.33e-05 GTTCTAAGGT TCTTTCGC CTTGAGAACT chr3R:25493397-25493517 56 5.33e-05 GTGTGTCAGC TCTTTCGC AATGTACAGT chr2R:24046201-24046321 87 5.33e-05 TTTGGAGCAT TCTTTCGC GATTGCCTTT chr2L:22148865-22148985 61 5.91e-05 AGATTGCTGC TCTTGCGG CAGCACTAGC chr3R:10767746-10767866 101 7.05e-05 ACGGTATTTT TCTTTCGG TATTTATTCG chr3L:18014654-18014774 3 7.05e-05 TC TCTTTCGG CCCCTTTTCT chr3R:9418849-9418969 14 8.77e-05 ACCGTCCCTC TCATTCGC TGATAAAACG chr3R:31945010-31945130 67 9.32e-05 TCCTGTACTC TCATGCGG TTGCAATAAA chr3R:20534742-20534862 66 1.06e-04 AAGTCGATCG GCGTGCGC AAAAGCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14768701-14768821 3.1e-06 100_[+4]_12 chr3L:20197843-20197963 3.1e-06 32_[+4]_80 chr3L:2820440-2820560 9.2e-06 55_[+4]_57 chr3R:29049410-29049530 1.2e-05 15_[+4]_97 chr2L:3449568-3449688 1.8e-05 92_[+4]_20 chr3L:17962342-17962462 1.8e-05 76_[+4]_36 chr3L:11623684-11623804 1.8e-05 91_[+4]_21 chr3R:22133465-22133585 2.1e-05 19_[+4]_93 chr2L:857174-857294 2.7e-05 108_[+4]_4 chr2R:10569706-10569826 2.7e-05 22_[+4]_90 chr3R:8306267-8306387 2.7e-05 98_[+4]_14 chr2L:2888123-2888243 3e-05 77_[+4]_35 chr3L:2837518-2837638 3.6e-05 79_[+4]_33 chr2R:6125547-6125667 4.1e-05 77_[+4]_35 chrX:3780339-3780459 5.3e-05 24_[+4]_88 chr2R:16831227-16831347 5.3e-05 94_[+4]_18 chr3R:25493397-25493517 5.3e-05 55_[+4]_57 chr2R:24046201-24046321 5.3e-05 86_[+4]_26 chr2L:22148865-22148985 5.9e-05 60_[+4]_52 chr3R:10767746-10767866 7.1e-05 100_[+4]_12 chr3L:18014654-18014774 7.1e-05 2_[+4]_110 chr3R:9418849-9418969 8.8e-05 13_[+4]_99 chr3R:31945010-31945130 9.3e-05 66_[+4]_46 chr3R:20534742-20534862 0.00011 65_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCWTKCGS width=8 seqs=24 chr2R:14768701-14768821 ( 101) GCTTGCGC 1 chr3L:20197843-20197963 ( 33) GCTTGCGC 1 chr3L:2820440-2820560 ( 56) GCTTTCGC 1 chr3R:29049410-29049530 ( 16) GCTTGCGG 1 chr2L:3449568-3449688 ( 93) GCTTTCGG 1 chr3L:17962342-17962462 ( 77) GCTTTCGG 1 chr3L:11623684-11623804 ( 92) GCTTTCGG 1 chr3R:22133465-22133585 ( 20) GCATGCGC 1 chr2L:857174-857294 ( 109) GCATTCGC 1 chr2R:10569706-10569826 ( 23) GCATTCGC 1 chr3R:8306267-8306387 ( 99) GCATTCGC 1 chr2L:2888123-2888243 ( 78) GCATGCGG 1 chr3L:2837518-2837638 ( 80) TCTTGCGC 1 chr2R:6125547-6125667 ( 78) GCATTCGG 1 chrX:3780339-3780459 ( 25) TCTTTCGC 1 chr2R:16831227-16831347 ( 95) TCTTTCGC 1 chr3R:25493397-25493517 ( 56) TCTTTCGC 1 chr2R:24046201-24046321 ( 87) TCTTTCGC 1 chr2L:22148865-22148985 ( 61) TCTTGCGG 1 chr3R:10767746-10767866 ( 101) TCTTTCGG 1 chr3L:18014654-18014774 ( 3) TCTTTCGG 1 chr3R:9418849-9418969 ( 14) TCATTCGC 1 chr3R:31945010-31945130 ( 67) TCATGCGG 1 chr3R:20534742-20534862 ( 66) GCGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 1.8e+002 -1123 -1123 177 32 -1123 249 -1123 -1123 7 -1123 -204 91 -1123 -1123 -1123 158 -1123 -1123 113 91 -1123 249 -1123 -1123 -1123 -1123 254 -1123 -1123 171 128 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.8e+002 0.000000 0.000000 0.583333 0.416667 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.041667 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.416667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCWTKCGS MEME-4 regular expression -------------------------------------------------------------------------------- [GT]C[TA]T[TG]CG[CG] -------------------------------------------------------------------------------- Time 26.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGGC MEME-5 width = 8 sites = 2 llr = 27 E-value = 5.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::a probability G aa:aaaa: matrix T :::::::: bits 2.5 ** ***** 2.3 ** ***** 2.0 ** ***** 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (19.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGAGGGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24836767-24836887 7 1.42e-06 TAAGCA GGAGGGGC AGGATTTTTG chr3L:73208-73328 56 1.42e-06 AGCTTGTTCT GGAGGGGC ATGACACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24836767-24836887 1.4e-06 6_[+5]_106 chr3L:73208-73328 1.4e-06 55_[+5]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGGC width=8 seqs=2 chr2R:24836767-24836887 ( 7) GGAGGGGC 1 chr3L:73208-73328 ( 56) GGAGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.2e+003 -765 -765 254 -765 -765 -765 254 -765 165 -765 -765 -765 -765 -765 254 -765 -765 -765 254 -765 -765 -765 254 -765 -765 -765 254 -765 -765 249 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGC MEME-5 regular expression -------------------------------------------------------------------------------- GGAGGGGC -------------------------------------------------------------------------------- Time 32.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:9237-9357 1.00e+00 120 chrM:14844-14964 1.00e+00 120 chrM:6446-6566 1.00e+00 120 chr3L:3249439-3249559 1.17e-01 120 chr2L:8899396-8899516 1.10e-01 108_[+3(1.05e-05)]_4 chr2L:2888123-2888243 3.66e-03 77_[+4(2.97e-05)]_35 chrX:15572095-15572215 1.18e-02 23_[+2(1.65e-05)]_89 chr3R:8306267-8306387 9.30e-05 98_[+4(2.69e-05)]_6_[+2(5.59e-06)] chr2R:15109609-15109729 4.37e-01 120 chr3L:13946143-13946263 1.31e-01 120 chr2R:12612078-12612198 6.53e-02 14_[+1(4.51e-05)]_98 chrM:19279-19399 1.00e+00 120 chr3L:12734313-12734433 9.69e-02 120 chr2R:13025376-13025496 8.07e-01 120 chr2L:9920089-9920209 1.37e-04 32_[+1(2.36e-06)]_49_[+2(5.59e-06)]_\ 23 chr3R:8860727-8860847 4.21e-01 120 chr3R:9338790-9338910 4.73e-01 120 chr3L:8158806-8158926 6.58e-02 100_[+2(6.11e-05)]_12 chr2L:12006138-12006258 1.14e-02 120 chrX:9636774-9636894 1.87e-03 77_[+5(5.22e-05)]_35 chr2R:11201809-11201929 3.86e-01 120 chr3R:5067377-5067497 3.36e-01 120 chr3L:3340906-3341026 2.54e-01 120 chr3R:21119228-21119348 1.52e-01 120 chr2L:3648278-3648398 7.63e-01 120 chr2R:11185065-11185185 1.65e-01 120 chr2R:6548958-6549078 9.59e-01 120 chr3R:9348667-9348787 5.50e-01 120 chr3L:8528759-8528879 3.27e-01 120 chr3L:14615382-14615502 3.08e-01 120 chr3L:8454154-8454274 5.80e-01 120 chr2R:13980086-13980206 9.96e-01 120 chr2R:19394680-19394800 9.08e-01 120 chr3R:23860297-23860417 1.00e+00 120 chr2L:22148865-22148985 6.96e-02 60_[+4(5.91e-05)]_52 chr2L:20830219-20830339 6.03e-01 120 chr2L:4037080-4037200 5.67e-01 120 chr3L:18866089-18866209 7.43e-01 120 chr2R:6125547-6125667 1.56e-02 77_[+4(4.14e-05)]_35 chrX:5031451-5031571 8.80e-01 120 chrX:6343469-6343589 8.23e-01 120 chr2R:10569706-10569826 7.72e-03 22_[+4(2.69e-05)]_90 chr3R:10850390-10850510 5.93e-01 120 chr2L:3788400-3788520 5.37e-01 120 chr2L:12459360-12459480 1.90e-02 120 chr2R:23721818-23721938 7.31e-02 120 chr3L:12096629-12096749 5.04e-03 89_[+3(4.67e-05)]_23 chr3R:14367939-14368059 2.64e-01 120 chr3L:6551044-6551164 1.60e-01 120 chr3L:20823549-20823669 3.02e-01 120 chr2R:16855382-16855502 4.10e-01 120 chr3R:8845061-8845181 1.92e-01 120 chr2L:18564155-18564275 4.75e-01 120 chrX:22487096-22487216 2.12e-04 51_[+1(1.79e-05)]_35_[+3(2.15e-05)]_\ 18 chr3L:9969714-9969834 3.76e-01 120 chr3L:21524194-21524314 9.53e-01 120 chr2L:13837818-13837938 1.51e-01 20_[+1(4.51e-05)]_92 chr2L:12479601-12479721 5.69e-02 86_[+2(7.85e-05)]_26 chr3R:22133465-22133585 3.53e-03 19_[+4(2.11e-05)]_93 chr3R:23343385-23343505 1.38e-01 120 chr3L:8825706-8825826 6.38e-01 120 chr3R:10101166-10101286 5.43e-01 120 chrM:16018-16138 1.00e+00 120 chr3L:2837518-2837638 1.36e-04 44_[+3(2.15e-05)]_27_[+4(3.58e-05)]_\ 33 chr2L:71747-71867 1.72e-01 120 chr3R:17393406-17393526 8.30e-02 120 chrX:11153696-11153816 2.70e-01 120 chr2R:5700701-5700821 8.51e-01 120 chr4:205642-205762 5.34e-01 120 chr2R:11539334-11539454 2.81e-01 120 chrM:15474-15594 1.00e+00 120 chr3L:15208867-15208987 2.23e-01 120 chr3R:29049410-29049530 1.12e-04 [+1(5.97e-05)]_7_[+4(1.22e-05)]_97 chr3R:20547881-20548001 2.06e-01 120 chr3R:21607825-21607945 8.99e-01 120 chr4:659219-659339 3.92e-02 25_[+1(7.67e-05)]_87 chr3L:2820440-2820560 9.91e-03 55_[+4(9.22e-06)]_57 chr3R:11590471-11590591 7.07e-02 60_[+3(8.67e-05)]_52 chr2R:17461795-17461915 2.11e-02 9_[+3(1.05e-05)]_103 chrX:3451433-3451553 4.33e-01 120 chr3R:27133601-27133721 9.57e-02 120 chr3L:73208-73328 1.83e-03 55_[+5(1.42e-06)]_57 chr3R:22726896-22727016 2.26e-01 120 chr3R:31808775-31808895 4.14e-02 52_[+3(1.05e-05)]_60 chr3R:14024094-14024214 1.03e-02 40_[+1(4.51e-05)]_72 chr2R:18705897-18706017 5.20e-01 120 chr2L:10269992-10270112 2.63e-05 58_[+2(1.65e-05)]_5_[+1(3.14e-05)]_\ 41 chr3R:14736237-14736357 7.72e-01 120 chrX:6601294-6601414 1.27e-02 94_[+3(1.05e-05)]_18 chr3L:19096211-19096331 9.29e-01 120 chrX:5941820-5941940 9.29e-01 120 chr2R:25009071-25009191 8.83e-02 112_[+1(5.97e-05)] chr3L:21062321-21062441 6.53e-02 120 chr2R:21553797-21553917 8.43e-01 120 chr3L:1088151-1088271 1.78e-01 120 chr3L:5367914-5368034 2.43e-01 120 chr2R:11394181-11394301 4.48e-03 108_[+2(1.65e-05)]_4 chr3R:10512343-10512463 9.86e-01 120 chr3R:9418849-9418969 5.43e-02 13_[+4(8.77e-05)]_99 chr3R:12398149-12398269 9.97e-01 120 chr2R:10100134-10100254 4.26e-01 120 chr2L:3171031-3171151 4.82e-01 120 chr3L:7369223-7369343 2.03e-01 120 chr2L:13367606-13367726 3.18e-02 19_[+2(1.65e-05)]_93 chr3R:31945010-31945130 1.81e-02 66_[+4(9.32e-05)]_46 chr2R:8083811-8083931 7.17e-01 120 chr3L:3417325-3417445 3.48e-04 1_[+3(1.05e-05)]_3_[+1(8.97e-05)]_\ 25_[+3(1.05e-05)]_67 chrX:16372071-16372191 9.91e-01 120 chr2L:19033464-19033584 2.23e-01 120 chrX:127677-127797 9.47e-02 20_[+3(8.67e-05)]_92 chrX:8240502-8240622 2.76e-01 120 chr2L:5294127-5294247 8.73e-03 120 chr2R:24046201-24046321 2.94e-05 14_[+3(1.05e-05)]_44_[+2(6.72e-05)]_\ 12_[+4(5.33e-05)]_26 chr2L:4196014-4196134 2.36e-01 120 chr3R:5362574-5362694 7.16e-01 120 chr3L:8777609-8777729 2.42e-01 120 chrX:17298998-17299118 8.54e-02 120 chr2L:10426267-10426387 4.05e-01 120 chr2L:12448310-12448430 4.27e-01 120 chr3L:11382185-11382305 3.12e-03 6_[+2(4.49e-05)]_106 chr3L:9364174-9364294 4.65e-01 120 chr3R:9702062-9702182 1.75e-01 120 chr3L:14241117-14241237 3.84e-02 120 chr3L:19292041-19292161 6.18e-05 60_[+3(4.67e-05)]_43_[+5(5.22e-05)]_\ 1 chr2R:18401835-18401955 1.76e-01 120 chr2L:3356933-3357053 3.68e-01 120 chr3R:11984774-11984894 5.85e-01 120 chr3L:12745262-12745382 8.08e-01 120 chrX:12675383-12675503 2.83e-02 120 chr3L:16194570-16194690 3.63e-02 120 chr2R:14480521-14480641 2.83e-01 120 chr3R:26058213-26058333 6.30e-02 70_[+2(6.11e-05)]_42 chr2L:8400315-8400435 2.16e-01 120 chr3L:2577677-2577797 2.13e-03 22_[+3(2.15e-05)]_90 chr2R:21519008-21519128 7.64e-01 120 chrX:17078757-17078877 6.01e-01 120 chr2L:6099329-6099449 9.23e-01 120 chr2R:25285816-25285936 3.32e-01 120 chrX:11496519-11496639 5.48e-01 120 chr3R:14398004-14398124 8.47e-01 120 chr3L:19902603-19902723 8.89e-03 5_[+1(3.56e-05)]_107 chr4:695965-696085 2.70e-02 88_[+2(6.11e-05)]_24 chr3R:14259989-14260109 5.37e-03 1_[+2(5.59e-06)]_111 chr2R:10531431-10531551 6.34e-02 51_[+1(7.67e-05)]_61 chr3L:20197843-20197963 3.70e-03 32_[+4(3.13e-06)]_80 chr3R:20534742-20534862 3.31e-02 120 chr2R:16335903-16336023 5.01e-01 120 chr2L:19424942-19425062 1.20e-01 120 chr3R:14711534-14711654 9.14e-01 120 chr3L:20436270-20436390 5.47e-01 120 chr3R:9886109-9886229 8.17e-03 10_[+1(5.97e-05)]_102 chr3L:8058102-8058222 9.81e-01 120 chr2L:15368619-15368739 9.75e-01 120 chr3R:23869411-23869531 1.06e-01 120 chr3R:7076372-7076492 9.97e-01 120 chr3L:8058842-8058962 5.62e-01 120 chr2R:22180564-22180684 4.11e-02 27_[+2(6.72e-05)]_85 chr2R:8444230-8444350 5.14e-02 120 chr2L:3338570-3338690 2.30e-02 80_[+1(4.51e-05)]_32 chr3L:16984166-16984286 2.12e-02 56_[+2(2.81e-05)]_56 chr2R:24137898-24138018 2.56e-01 120 chr3L:20199781-20199901 4.55e-02 120 chr3L:11623684-11623804 2.33e-04 37_[+2(1.65e-05)]_46_[+4(1.81e-05)]_\ 21 chr2L:3858226-3858346 9.85e-02 120 chr3R:29787997-29788117 5.64e-03 2_[+1(2.36e-06)]_110 chr2R:20319005-20319125 8.85e-01 120 chr3L:8369093-8369213 4.85e-03 22_[+3(1.05e-05)]_90 chr3L:18014654-18014774 3.15e-02 2_[+4(7.05e-05)]_110 chr2R:16711024-16711144 3.69e-01 120 chr3L:17962342-17962462 1.12e-03 76_[+4(1.81e-05)]_36 chrX:3437628-3437748 4.30e-01 120 chr2R:22316612-22316732 8.44e-01 120 chr3R:10133709-10133829 1.07e-02 25_[+1(9.01e-06)]_87 chr3R:31718332-31718452 9.99e-01 120 chr3L:22157778-22157898 3.81e-01 120 chr3L:16613232-16613352 5.23e-02 103_[+3(4.67e-05)]_1_[+3(1.05e-05)] chr2L:10728901-10729021 1.13e-03 71_[+2(1.65e-05)]_41 chr3L:3947398-3947518 9.44e-02 120 chrX:11922837-11922957 2.12e-01 120 chr2L:5209468-5209588 8.76e-01 120 chr3L:18800598-18800718 4.90e-01 120 chr3R:5821356-5821476 2.41e-01 120 chr3L:5277167-5277287 3.62e-01 120 chr3L:225361-225481 4.37e-01 120 chr2L:8426452-8426572 3.76e-01 71_[+3(8.67e-05)]_41 chr3R:17685019-17685139 4.68e-01 120 chr3L:20827300-20827420 2.13e-01 120 chr2R:18658218-18658338 3.15e-03 44_[+1(5.97e-05)]_12_[+2(1.65e-05)]_\ 48 chr3R:30389286-30389406 1.55e-01 120 chr3R:7107784-7107904 5.66e-02 120 chr3R:30387219-30387339 7.59e-02 120 chr3L:2636475-2636595 9.70e-01 120 chr3L:11322985-11323105 2.15e-01 120 chr2R:10026102-10026222 2.85e-06 14_[+1(3.14e-05)]_6_[+3(4.67e-05)]_\ 84 chr3L:21887447-21887567 6.93e-03 25_[+1(7.67e-05)]_87 chr3R:25493397-25493517 1.09e-04 32_[+2(5.59e-06)]_15_[+4(5.33e-05)]_\ 57 chr3R:15834572-15834692 5.76e-01 120 chr3R:6433142-6433262 2.80e-01 120 chr2R:16831227-16831347 1.02e-01 94_[+4(5.33e-05)]_18 chr2R:6144292-6144412 6.13e-01 120 chr3R:20592679-20592799 3.15e-01 12_[+2(6.11e-05)]_100 chr3L:16709883-16710003 2.04e-03 33_[+2(3.95e-05)]_42_[+3(1.05e-05)]_\ 4_[+3(1.05e-05)]_17 chr3L:5627784-5627904 7.41e-03 70_[+1(3.14e-05)]_42 chr3R:9344337-9344457 7.71e-01 120 chr3L:18001968-18002088 1.00e-01 120 chr3R:22365975-22366095 4.28e-03 27_[+2(8.40e-05)]_85 chr3R:16316840-16316960 2.86e-03 82_[+1(2.36e-06)]_30 chr3R:4761507-4761627 3.25e-02 68_[+2(5.59e-06)]_44 chr2L:857174-857294 8.89e-03 108_[+4(2.69e-05)]_4 chr2L:2009462-2009582 8.04e-02 120 chr3R:8357996-8358116 9.48e-01 120 chr3R:16482398-16482518 9.92e-03 5_[+1(9.01e-06)]_38_[+1(5.97e-05)]_\ 61 chr3R:10767746-10767866 1.67e-02 46_[+1(8.97e-05)]_46_[+4(7.05e-05)]_\ 12 chr2R:25214980-25215100 7.16e-01 120 chr2L:9671347-9671467 8.31e-01 120 chr2L:3449568-3449688 2.66e-02 92_[+4(1.81e-05)]_20 chrX:11600996-11601116 1.38e-03 14_[+1(4.62e-06)]_98 chr2R:18351102-18351222 8.13e-02 120 chrX:142094-142214 9.53e-01 120 chr3R:25651537-25651657 6.23e-02 37_[+3(2.15e-05)]_75 chr3L:11788994-11789114 6.77e-02 120 chr3R:22042550-22042670 7.98e-03 57_[+1(5.97e-05)]_55 chr3L:2833691-2833811 3.71e-01 120 chr2L:14334002-14334122 3.34e-02 54_[+1(1.57e-05)]_58 chrX:3780339-3780459 1.34e-02 24_[+4(5.33e-05)]_88 chr2R:6168482-6168602 1.42e-02 86_[+1(5.97e-05)]_26 chr3L:12725882-12726002 4.89e-01 120 chr3L:15094040-15094160 8.67e-01 120 chr3R:15457789-15457909 6.25e-02 120 chr2L:13878326-13878446 1.44e-01 102_[+1(5.97e-05)]_10 chr3L:7781832-7781952 1.82e-02 120 chr3R:14568894-14569014 4.30e-02 59_[+3(4.67e-05)]_53 chr3L:1570225-1570345 6.80e-01 120 chr3R:24148931-24149051 9.59e-04 17_[+2(2.23e-05)]_95 chr2R:14768701-14768821 1.69e-03 100_[+4(3.13e-06)]_12 chr2R:17456316-17456436 7.67e-01 120 chr3R:25303991-25304111 9.08e-01 120 chr2R:24836767-24836887 5.12e-03 6_[+5(1.42e-06)]_106 chr2R:7749741-7749861 4.84e-01 120 chr2R:8650088-8650208 7.25e-02 57_[+1(7.67e-05)]_55 chrX:4931120-4931240 6.61e-02 16_[+1(1.79e-05)]_96 chr3R:8115948-8116068 7.74e-01 120 chr2L:8004262-8004382 3.22e-02 54_[+2(1.65e-05)]_58 chr2L:21866699-21866819 8.35e-02 120 chr2R:19414746-19414866 1.10e-03 93_[+2(1.65e-05)]_19 chr3L:3909718-3909838 6.71e-01 120 chr2R:24541145-24541265 1.33e-01 97_[+3(8.67e-05)]_15 chr3L:8825091-8825211 1.84e-01 120 chr3R:22424074-22424194 9.07e-01 120 chr3L:14789803-14789923 3.98e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************