******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/run.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:9142974-9143094 1.0000 120 chr3R:12329956-12330076 1.0000 120 chr3R:16800365-16800485 1.0000 120 chr2R:6535200-6535320 1.0000 120 chr2R:12538827-12538947 1.0000 120 chr3R:19803676-19803796 1.0000 120 chr3R:23911452-23911572 1.0000 120 chrX:20687335-20687455 1.0000 120 chr3R:25283292-25283412 1.0000 120 chr3R:9376961-9377081 1.0000 120 chr3L:6336576-6336696 1.0000 120 chr3R:25549822-25549942 1.0000 120 chr3L:473167-473287 1.0000 120 chr2L:7087694-7087814 1.0000 120 chr3R:22053288-22053408 1.0000 120 chr3R:8160253-8160373 1.0000 120 chr2L:14478957-14479077 1.0000 120 chr3R:19803875-19803995 1.0000 120 chr2L:14374142-14374262 1.0000 120 chr3L:647659-647779 1.0000 120 chr3L:11407596-11407716 1.0000 120 chr2R:19847596-19847716 1.0000 120 chr2L:7133626-7133746 1.0000 120 chr2L:12348675-12348795 1.0000 120 chr3R:15121976-15122096 1.0000 120 chr2L:8715641-8715761 1.0000 120 chr3L:17358574-17358694 1.0000 120 chr2R:5736830-5736950 1.0000 120 chr3R:12645042-12645162 1.0000 120 chr3L:5855487-5855607 1.0000 120 chr2R:11274409-11274529 1.0000 120 chr2L:6194170-6194290 1.0000 120 chr3R:16329949-16330069 1.0000 120 chr3L:4206027-4206147 1.0000 120 chr2L:5445616-5445736 1.0000 120 chr2L:1071451-1071571 1.0000 120 chr3L:12638521-12638641 1.0000 120 chr3R:26655697-26655817 1.0000 120 chrX:3043028-3043148 1.0000 120 chr3R:13231324-13231444 1.0000 120 chr2L:16711989-16712109 1.0000 120 chr2L:9620144-9620264 1.0000 120 chr3L:21261754-21261874 1.0000 120 chr3R:16356347-16356467 1.0000 120 chr3R:13912166-13912286 1.0000 120 chr2R:16215934-16216054 1.0000 120 chr3R:9144411-9144531 1.0000 120 chr3R:26332217-26332337 1.0000 120 chr3R:21501395-21501515 1.0000 120 chr2R:16806915-16807035 1.0000 120 chr3L:4077028-4077148 1.0000 120 chr2R:23231461-23231581 1.0000 120 chr3L:19155715-19155835 1.0000 120 chr2R:9149399-9149519 1.0000 120 chr2R:18329753-18329873 1.0000 120 chrX:19239535-19239655 1.0000 120 chr3R:4985783-4985903 1.0000 120 chrX:20689717-20689837 1.0000 120 chr3L:19289486-19289606 1.0000 120 chr3L:6050475-6050595 1.0000 120 chr2R:19768834-19768954 1.0000 120 chr2R:11189373-11189493 1.0000 120 chr3L:6920374-6920494 1.0000 120 chr2L:19063263-19063383 1.0000 120 chr3L:1708238-1708358 1.0000 120 chr3R:21869760-21869880 1.0000 120 chrX:19326131-19326251 1.0000 120 chr2R:20889914-20890034 1.0000 120 chrX:20694152-20694272 1.0000 120 chr3R:31884935-31885055 1.0000 120 chr2R:18571137-18571257 1.0000 120 chrX:20582987-20583107 1.0000 120 chr2R:9028253-9028373 1.0000 120 chr3L:7938613-7938733 1.0000 120 chr2L:14463340-14463460 1.0000 120 chr3R:28673985-28674105 1.0000 120 chr2L:14540769-14540889 1.0000 120 chr2L:12458788-12458908 1.0000 120 chr2R:19837687-19837807 1.0000 120 chr3L:17365236-17365356 1.0000 120 chr2L:19235818-19235938 1.0000 120 chr3L:424689-424809 1.0000 120 chr2L:8853939-8854059 1.0000 120 chr3L:14640917-14641037 1.0000 120 chr2R:15717726-15717846 1.0000 120 chr2R:22906974-22907094 1.0000 120 chr3L:10773742-10773862 1.0000 120 chr2R:22230078-22230198 1.0000 120 chr3R:28899136-28899256 1.0000 120 chr2L:19846604-19846724 1.0000 120 chr2R:12392762-12392882 1.0000 120 chr2R:12439909-12440029 1.0000 120 chr3L:6498219-6498339 1.0000 120 chr3R:7333263-7333383 1.0000 120 chrX:18547954-18548074 1.0000 120 chr3L:14223499-14223619 1.0000 120 chr3L:14114133-14114253 1.0000 120 chr3R:29512858-29512978 1.0000 120 chr3L:3080170-3080290 1.0000 120 chr3R:10648576-10648696 1.0000 120 chrX:20643600-20643720 1.0000 120 chr2R:20633697-20633817 1.0000 120 chr3R:30449556-30449676 1.0000 120 chr2R:6964601-6964721 1.0000 120 chr2L:19482393-19482513 1.0000 120 chr2R:22615829-22615949 1.0000 120 chr2L:12005878-12005998 1.0000 120 chr2L:11961352-11961472 1.0000 120 chr2R:16813895-16814015 1.0000 120 chr2L:16791537-16791657 1.0000 120 chr3R:4903655-4903775 1.0000 120 chr2R:19230719-19230839 1.0000 120 chr3L:14570391-14570511 1.0000 120 chr3R:16743312-16743432 1.0000 120 chr3L:22390426-22390546 1.0000 120 chrX:7666759-7666879 1.0000 120 chr3R:13909155-13909275 1.0000 120 chr3L:8750246-8750366 1.0000 120 chr3R:13018386-13018506 1.0000 120 chr2R:18311106-18311226 1.0000 120 chr3R:21586132-21586252 1.0000 120 chr3R:30531475-30531595 1.0000 120 chr2R:15816346-15816466 1.0000 120 chr2R:18322911-18323031 1.0000 120 chr3L:958780-958900 1.0000 120 chr2R:22197553-22197673 1.0000 120 chr3L:16489462-16489582 1.0000 120 chrX:17409989-17410109 1.0000 120 chr2L:14537981-14538101 1.0000 120 chr2L:8884361-8884481 1.0000 120 chr3R:14069723-14069843 1.0000 120 chr2L:10615191-10615311 1.0000 120 chr2R:9551724-9551844 1.0000 120 chr2L:14267392-14267512 1.0000 120 chr3L:13071294-13071414 1.0000 120 chr2L:6411307-6411427 1.0000 120 chr2R:18229419-18229539 1.0000 120 chr2L:13906001-13906121 1.0000 120 chr2L:16389302-16389422 1.0000 120 chr3R:29075651-29075771 1.0000 120 chr3R:13930414-13930534 1.0000 120 chr3L:10862372-10862492 1.0000 120 chr3R:15873093-15873213 1.0000 120 chr3R:23741205-23741325 1.0000 120 chr3L:5980669-5980789 1.0000 120 chr2R:25120903-25121023 1.0000 120 chr2R:16800575-16800695 1.0000 120 chr3L:8851867-8851987 1.0000 120 chr2L:6155688-6155808 1.0000 120 chr2R:14858607-14858727 1.0000 120 chr3R:9891789-9891909 1.0000 120 chr2R:13438987-13439107 1.0000 120 chrX:20724330-20724450 1.0000 120 chr3L:10861552-10861672 1.0000 120 chrX:20729165-20729285 1.0000 120 chr2L:19784083-19784203 1.0000 120 chr2L:20322213-20322333 1.0000 120 chrX:20731655-20731775 1.0000 120 chr2L:2133090-2133210 1.0000 120 chr3R:9473547-9473667 1.0000 120 chr2L:14539557-14539677 1.0000 120 chr3R:29552946-29553066 1.0000 120 chr3R:10559212-10559332 1.0000 120 chr2L:18621400-18621520 1.0000 120 chr2L:14490111-14490231 1.0000 120 chr2L:14537205-14537325 1.0000 120 chr3R:23130284-23130404 1.0000 120 chr3L:1931427-1931547 1.0000 120 chr2L:19480880-19481000 1.0000 120 chr2R:16209581-16209701 1.0000 120 chr2R:13563709-13563829 1.0000 120 chr3R:9530083-9530203 1.0000 120 chr3L:18237997-18238117 1.0000 120 chr3R:19499833-19499953 1.0000 120 chr3L:12085463-12085583 1.0000 120 chr3L:17895979-17896099 1.0000 120 chr4:495806-495926 1.0000 120 chr2R:6560206-6560326 1.0000 120 chr2R:23883006-23883126 1.0000 120 chr3R:28572420-28572540 1.0000 120 chr2L:308324-308444 1.0000 120 chr3R:9352469-9352589 1.0000 120 chr3R:22717663-22717783 1.0000 120 chr3L:7811009-7811129 1.0000 120 chr2L:14454474-14454594 1.0000 120 chr2R:12008918-12009038 1.0000 120 chr3L:3624979-3625099 1.0000 120 chr2R:10598219-10598339 1.0000 120 chr2R:22533120-22533240 1.0000 120 chr2L:14449952-14450072 1.0000 120 chr3L:4720739-4720859 1.0000 120 chr3R:18585385-18585505 1.0000 120 chr2L:14422328-14422448 1.0000 120 chr2L:14403753-14403873 1.0000 120 chr2L:11296457-11296577 1.0000 120 chr3L:15741020-15741140 1.0000 120 chr3R:5125820-5125940 1.0000 120 chr2R:13621392-13621512 1.0000 120 chr3R:22449987-22450107 1.0000 120 chr2R:7773873-7773993 1.0000 120 chr2R:18604004-18604124 1.0000 120 chr3R:12717701-12717821 1.0000 120 chr2R:11638299-11638419 1.0000 120 chr2L:7216382-7216502 1.0000 120 chr2R:18564349-18564469 1.0000 120 chr2L:307276-307396 1.0000 120 chr3R:9142101-9142221 1.0000 120 chr2L:7577790-7577910 1.0000 120 chr3R:23877969-23878089 1.0000 120 chrX:20690632-20690752 1.0000 120 chr3L:10811251-10811371 1.0000 120 chr3L:3708037-3708157 1.0000 120 chrX:5885024-5885144 1.0000 120 chr3R:8225669-8225789 1.0000 120 chr3R:10699058-10699178 1.0000 120 chr2R:17716652-17716772 1.0000 120 chr3L:15598109-15598229 1.0000 120 chr3R:28573419-28573539 1.0000 120 chr2R:18375318-18375438 1.0000 120 chr2R:10734254-10734374 1.0000 120 chr2R:21475037-21475157 1.0000 120 chr2L:8588026-8588146 1.0000 120 chr2R:16211972-16212092 1.0000 120 chr2R:7071169-7071289 1.0000 120 chr3R:18783427-18783547 1.0000 120 chr3R:24798806-24798926 1.0000 120 chr2L:3619106-3619226 1.0000 120 chr2L:5095578-5095698 1.0000 120 chr2L:12589052-12589172 1.0000 120 chr3L:12057589-12057709 1.0000 120 chr3R:21343267-21343387 1.0000 120 chr3R:23538744-23538864 1.0000 120 chr3R:4984803-4984923 1.0000 120 chr2R:20914048-20914168 1.0000 120 chr3L:19158441-19158561 1.0000 120 chr2R:7417272-7417392 1.0000 120 chr3R:5096357-5096477 1.0000 120 chr2R:11496542-11496662 1.0000 120 chr2L:4038025-4038145 1.0000 120 chrX:18505277-18505397 1.0000 120 chr3L:10857258-10857378 1.0000 120 chr2R:8603511-8603631 1.0000 120 chr3L:7370458-7370578 1.0000 120 chr3R:26031888-26032008 1.0000 120 chr3L:8024466-8024586 1.0000 120 chr3L:510996-511116 1.0000 120 chr2L:2636299-2636419 1.0000 120 chr3R:10154404-10154524 1.0000 120 chr3R:24582410-24582530 1.0000 120 chr3L:6975875-6975995 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_run/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/run.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.226 G 0.219 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.226 G 0.219 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGYGGTT MEME-1 width = 8 sites = 105 llr = 842 E-value = 1.4e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2::6::23 probability G 1:a1aa:1 matrix T 6a:4::86 bits 2.2 * ** 2.0 ** ** 1.8 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** *** (11.6 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGGTT consensus C T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7370458-7370578 70 1.28e-05 tacaCACGTG TTGCGGTT TATCGAGAGG chr2R:7071169-7071289 78 1.28e-05 TATTTGTACT TTGCGGTT AGCTCGCACA chr2L:8588026-8588146 49 1.28e-05 gGGTCATGCC TTGCGGTT GGCCTGCCTG chr2R:17716652-17716772 84 1.28e-05 GCATGTGTCT TTGCGGTT TTCGGCTGCC chr3R:10699058-10699178 50 1.28e-05 CCACAGTTAT TTGCGGTT CTCGTGCAGA chr2R:13563709-13563829 59 1.28e-05 CACGATCTGT TTGCGGTT GAGCGCTCGA chr2R:14858607-14858727 67 1.28e-05 AAGGAACCAT TTGCGGTT ATAACAAACC chr2L:6411307-6411427 81 1.28e-05 TAAACAAATG TTGCGGTT GGCCGTGATT chr2R:9551724-9551844 45 1.28e-05 GGTTTCTGTT TTGCGGTT AAGTAAACGT chr2R:15816346-15816466 10 1.28e-05 ACACTGTTC TTGCGGTT TTTTATTACG chr3R:16743312-16743432 13 1.28e-05 TATAAACAAA TTGCGGTT AATACCAAAA chr3L:14570391-14570511 97 1.28e-05 ggcgttgTTT TTGCGGTT TGCCGCGTGC chr2L:16791537-16791657 55 1.28e-05 TAAACAAACT TTGCGGTT AGTCTGCATC chr2L:11961352-11961472 40 1.28e-05 TCATGTTTAT TTGCGGTT TCAGTTTAAT chr2L:12005878-12005998 85 1.28e-05 GGTGGGTGGG TTGCGGTT GACTGTGGGG chr3L:3080170-3080290 76 1.28e-05 CACTGTTTGA TTGCGGTT GGGCTGATAA chrX:20582987-20583107 79 1.28e-05 TGAATAAATG TTGCGGTT AACCGCAACT chrX:19326131-19326251 26 1.28e-05 ATCAACATAT TTGCGGTT AGTTTATTGG chr2L:19063263-19063383 56 1.28e-05 CGATAGGCTA TTGCGGTT TTGTATCAAG chr3R:4985783-4985903 14 1.28e-05 CCGTTTACTT TTGCGGTT TTGTTCAGCG chr2L:7133626-7133746 20 1.28e-05 TTAAAACATT TTGCGGTT GTTGTTAATG chr2L:5095578-5095698 77 2.35e-05 TCTATTTTGT TTGCGGTC TGCGGTGCGT chr3R:7333263-7333383 88 2.35e-05 CTGTCTTTTG TTGCGGTC AACCGGAAAA chr2R:6535200-6535320 54 2.35e-05 AGCTTTTAAT TTGCGGTC GAAATGAAAT chr3R:16800365-16800485 73 2.35e-05 CTACGACATC TTGCGGTC CATAAAAACG chr3R:24582410-24582530 71 3.88e-05 GGTGTTTTTG TTGTGGTT AAGAGAGTTT chr2R:10598219-10598339 38 3.88e-05 TCTCGTATTT TTGTGGTT TGCTGCTGAA chr2R:13438987-13439107 41 3.88e-05 TTTTGCCATT TTGTGGTT TTATTAACTA chr3R:9891789-9891909 52 3.88e-05 TTTCGCTGAT TTGTGGtt tattttatta chr2R:18311106-18311226 44 3.88e-05 TATAATCCGC TTGTGGTT AAAATGGTGT chr2R:6964601-6964721 38 3.88e-05 CGAGATAAAA TTGTGGTT ACAACGCAAA chr2L:19846604-19846724 35 3.88e-05 AATGTGTGAT TTGTGGTT TATTCGTAAT chr2L:12458788-12458908 81 3.88e-05 GAACGAACGG TTGTGGTT AAAAAAGAAA chr2R:18329753-18329873 74 3.88e-05 ATAATAAAAC TTGTGGTT TTCCATTGTC chr2L:7087694-7087814 62 3.88e-05 CCCATCCCCT TTGTGGTT TATTTTTTAC chr3R:19803676-19803796 62 3.88e-05 ATGATCACTT TTGTGGTT ATTTAACATA chr2R:20914048-20914168 17 4.95e-05 cttttgtgct ctgcggtt ttttggctcc chrX:20690632-20690752 34 4.95e-05 TGGCCGATCT CTGCGGTT ACCCCAGCCC chr3R:13930414-13930534 86 4.95e-05 CATTTTGCCG CTGCGGTT GAAGCGGGAC chr2L:10615191-10615311 38 4.95e-05 AAATTAGATT CTGCGGTT TTCGAATGTC chr3L:6050475-6050595 6 4.95e-05 AAAGC CTGCGGTT TGTAATCTCA chr3L:5855487-5855607 46 4.95e-05 GCTATCTAAT CTGCGGTT TCGGGGCGAC chr3L:473167-473287 79 4.95e-05 GTCGATTGGC CTGCGGTT TTTCATATCT chr3R:23741205-23741325 35 6.23e-05 GTTAACGGCG TTGTGGTC AACGCGAATC chr3R:29075651-29075771 45 6.23e-05 GTGTATACAG TTGTGGTC AAAATAATGG chr3R:28899136-28899256 54 6.23e-05 ATATCTTATC TTGTGGTC GCCCATATCG chr2R:22906974-22907094 58 6.23e-05 GGAGGTCAAG TTGTGGTC GCCTCTTGTG chr2L:14540769-14540889 52 6.23e-05 TCCGACGCTG TTGTGGTC ACTTTGATCG chr2R:16806915-16807035 84 6.23e-05 CATTTACATT TTGTGGTC TGTGGCACCT chr2L:1071451-1071571 3 6.23e-05 TG TTGTGGTC TAGAAAAAAC chr3R:9376961-9377081 13 6.23e-05 TTTCCCTTTG TTGTGGTC GAAATGGTGG chr3R:23911452-23911572 39 6.23e-05 AGTCATCGAC TTGTGGTC AGAAAATGTG chr2R:22197553-22197673 77 7.27e-05 GCCGTTTAAT TTGCGGTG GTGCTAGCAA chr2L:14463340-14463460 80 7.27e-05 AATCAACATT TTGCGGTG AGCTGCCATT chr2R:16209581-16209701 56 8.16e-05 TGCGTTTAGT CTGCGGTC TGCAGAAAGC chr3L:10773742-10773862 110 8.16e-05 GTATCTGTAT CTGCGGTC GAC chr2L:9620144-9620264 18 8.16e-05 TGTAATCAGG CTGCGGTC ACAGTTCGAC chr3R:10559212-10559332 92 1.05e-04 TGTGTGGGTC TTGCGGCT TGACGAAACT chr2R:18322911-18323031 83 1.05e-04 CTTTGCCTTT CTGTGGTT TTCCATCACC chr3L:6498219-6498339 3 1.05e-04 TA TTGCGGCT TTCATGGTTT chr3L:424689-424809 30 1.05e-04 CCTTTTTTTG TTGCGGCT GAAAATTCGA chrX:20694152-20694272 39 1.05e-04 AAATTTTTTG CTGTGGTT GTTGTTGCGG chr3R:25549822-25549942 43 1.05e-04 ATCCAAGATC TTGCGGCT TACCGACACA chr3R:8225669-8225789 83 1.15e-04 GCGTGCCGGC GTGCGGTT CGTGTAATGA chr2L:14539557-14539677 75 1.15e-04 CCACATATTT GTGCGGTT AATTAGAGAC chr2R:19847596-19847716 51 1.15e-04 TTGATTGACA GTGCGGTT TCCGGCCCTC chr2L:12589052-12589172 72 1.28e-04 AGCATAACAC TTGTGGTG TGCCGCAGTT chr3R:16329949-16330069 50 1.28e-04 GATGGCGCTT TTGTGGTG TTCGCTCGGA chr2R:18375318-18375438 76 1.47e-04 TTTTCATTTC CTGTGGTC GTATTTATGC chr3L:1708238-1708358 19 1.47e-04 AATGATATTT TTGCGGCC TCAGCCAGCG chr3R:22053288-22053408 75 1.47e-04 GTCGTGAACT CTGTGGTC GTCTCCGGCC chr3R:15873093-15873213 53 1.69e-04 TGTCGCATTG TTGTGGCT ATTTTTGGAG chr2L:13906001-13906121 30 1.69e-04 TGAAACACTT CTGCGGTG GTTAGTCGAT chrX:18547954-18548074 12 1.69e-04 TGACCGCCGT CTGCGGTG CGTCGTTTAT chr2R:25120903-25121023 94 1.77e-04 TTATTTGTTC GTGCGGTC AGTCTGTTGT chr2R:10734254-10734374 19 2.11e-04 CTCCAAAATA CTGCGGCT ATCAGCTGCC chr2L:7577790-7577910 83 2.11e-04 CCCCACATTT TTGGGGTT ACACATCAAA chrX:7666759-7666879 7 2.11e-04 CCGATA GTGTGGTT AGCCATTATA chr2R:16813895-16814015 40 2.11e-04 CCTTGGTTTT GTGTGGTT GTCGTTTCCT chr2L:14478957-14479077 68 2.11e-04 CAGTTCAGTT CTGCGGCT CTAACGATTT chr2R:16211972-16212092 109 2.22e-04 TGTGTAATTT TTGTGGCC GCCG chr3R:8160253-8160373 75 2.22e-04 GTTTGTTTGT TTGTGGCC GTGTTGTTAT chr2R:22533120-22533240 56 2.51e-04 AACAAAATGT TTGCGGGT GCAATAAGCG chr2L:19480880-19481000 64 2.51e-04 CTTAAATGAA TTGCGGCG ATTTATTGCG chr3R:30449556-30449676 56 2.51e-04 TACTACATGT TTGCGGGT GGGTCAAGGT chr2L:19235818-19235938 96 2.51e-04 ATGGCTATGG CTGTGGTG GCCATGGTGG chr2L:14422328-14422448 36 2.93e-04 TTACGACGCT GTGTGGTC TCGTTTGACA chr3R:10648576-10648696 78 2.93e-04 GTCCATCCAA ATGCGGTT AAGATCCGAA chr3R:28673985-28674105 60 2.93e-04 GTCGAAAAAT ATGCGGTT TTCTAATTTG chr3L:19289486-19289606 55 2.93e-04 TCCTGCGGAT TTGGGGTC GGTATACATA chrX:3043028-3043148 28 2.93e-04 ggtttcggtt ttggggtc gggttTGATG chr2L:307276-307396 52 3.12e-04 GGTAGGGAGT GTGCGGTG AATACAAGTG chr3L:14640917-14641037 18 3.73e-04 GGTCATAAAT TTGTGGGT TTTATTGACC chr2L:14374142-14374262 27 3.73e-04 TACACATTTA ATGCGGTC AAATTAATTA chr3L:19158441-19158561 71 3.98e-04 GGTGGTTCCA CTGTGGCC CTGCCTtcca chr3R:9142101-9142221 31 3.98e-04 GCCGCTTGCC CTGTGGCC TTTTCCGACC chr3R:25283292-25283412 51 3.98e-04 TAttgctttg atgtggtt tgtttttttt chr2L:2636299-2636419 101 4.34e-04 TGGATTTGCT GTGTGGTG CGAACATCCC chr3R:5125820-5125940 59 4.34e-04 TGCGGCTTGT CTGCGGGT Ttcggactcg chr3R:19499833-19499953 66 4.34e-04 AGTTTTGTGT CTGCGGCG GCTTATTGCC chrX:20729165-20729285 45 4.34e-04 TTTTGGATGT TTGGGGTG GCCACAATGG chr2R:16800575-16800695 25 4.34e-04 GGTATTGGTA TTGGGGTG TGTCCTGTCT chr2R:23231461-23231581 54 4.34e-04 TGCCGTTGCA CTGCGGCG GTCCATAAAA chr3L:10811251-10811371 1 4.50e-04 . CTGGGGTC CCTTCGGGTG chr2R:12439909-12440029 90 4.50e-04 acaGAGCTGA GTGCGGCC ACCCACAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7370458-7370578 1.3e-05 69_[+1]_43 chr2R:7071169-7071289 1.3e-05 77_[+1]_35 chr2L:8588026-8588146 1.3e-05 48_[+1]_64 chr2R:17716652-17716772 1.3e-05 83_[+1]_29 chr3R:10699058-10699178 1.3e-05 49_[+1]_63 chr2R:13563709-13563829 1.3e-05 58_[+1]_54 chr2R:14858607-14858727 1.3e-05 66_[+1]_46 chr2L:6411307-6411427 1.3e-05 80_[+1]_32 chr2R:9551724-9551844 1.3e-05 44_[+1]_68 chr2R:15816346-15816466 1.3e-05 9_[+1]_103 chr3R:16743312-16743432 1.3e-05 12_[+1]_100 chr3L:14570391-14570511 1.3e-05 96_[+1]_16 chr2L:16791537-16791657 1.3e-05 54_[+1]_58 chr2L:11961352-11961472 1.3e-05 39_[+1]_73 chr2L:12005878-12005998 1.3e-05 84_[+1]_28 chr3L:3080170-3080290 1.3e-05 75_[+1]_37 chrX:20582987-20583107 1.3e-05 78_[+1]_34 chrX:19326131-19326251 1.3e-05 25_[+1]_87 chr2L:19063263-19063383 1.3e-05 55_[+1]_57 chr3R:4985783-4985903 1.3e-05 13_[+1]_99 chr2L:7133626-7133746 1.3e-05 19_[+1]_93 chr2L:5095578-5095698 2.3e-05 76_[+1]_36 chr3R:7333263-7333383 2.3e-05 87_[+1]_25 chr2R:6535200-6535320 2.3e-05 53_[+1]_59 chr3R:16800365-16800485 2.3e-05 72_[+1]_40 chr3R:24582410-24582530 3.9e-05 70_[+1]_42 chr2R:10598219-10598339 3.9e-05 37_[+1]_75 chr2R:13438987-13439107 3.9e-05 40_[+1]_72 chr3R:9891789-9891909 3.9e-05 51_[+1]_61 chr2R:18311106-18311226 3.9e-05 43_[+1]_69 chr2R:6964601-6964721 3.9e-05 37_[+1]_75 chr2L:19846604-19846724 3.9e-05 34_[+1]_78 chr2L:12458788-12458908 3.9e-05 80_[+1]_32 chr2R:18329753-18329873 3.9e-05 73_[+1]_39 chr2L:7087694-7087814 3.9e-05 61_[+1]_51 chr3R:19803676-19803796 3.9e-05 61_[+1]_51 chr2R:20914048-20914168 5e-05 16_[+1]_96 chrX:20690632-20690752 5e-05 33_[+1]_79 chr3R:13930414-13930534 5e-05 85_[+1]_27 chr2L:10615191-10615311 5e-05 37_[+1]_75 chr3L:6050475-6050595 5e-05 5_[+1]_107 chr3L:5855487-5855607 5e-05 45_[+1]_67 chr3L:473167-473287 5e-05 78_[+1]_34 chr3R:23741205-23741325 6.2e-05 34_[+1]_78 chr3R:29075651-29075771 6.2e-05 44_[+1]_68 chr3R:28899136-28899256 6.2e-05 53_[+1]_59 chr2R:22906974-22907094 6.2e-05 57_[+1]_55 chr2L:14540769-14540889 6.2e-05 51_[+1]_61 chr2R:16806915-16807035 6.2e-05 83_[+1]_29 chr2L:1071451-1071571 6.2e-05 2_[+1]_110 chr3R:9376961-9377081 6.2e-05 12_[+1]_100 chr3R:23911452-23911572 6.2e-05 38_[+1]_74 chr2R:22197553-22197673 7.3e-05 76_[+1]_36 chr2L:14463340-14463460 7.3e-05 79_[+1]_33 chr2R:16209581-16209701 8.2e-05 55_[+1]_57 chr3L:10773742-10773862 8.2e-05 109_[+1]_3 chr2L:9620144-9620264 8.2e-05 17_[+1]_95 chr3R:10559212-10559332 0.00011 91_[+1]_21 chr2R:18322911-18323031 0.00011 82_[+1]_30 chr3L:6498219-6498339 0.00011 2_[+1]_110 chr3L:424689-424809 0.00011 29_[+1]_83 chrX:20694152-20694272 0.00011 38_[+1]_74 chr3R:25549822-25549942 0.00011 42_[+1]_70 chr3R:8225669-8225789 0.00012 82_[+1]_30 chr2L:14539557-14539677 0.00012 74_[+1]_38 chr2R:19847596-19847716 0.00012 50_[+1]_62 chr2L:12589052-12589172 0.00013 71_[+1]_41 chr3R:16329949-16330069 0.00013 49_[+1]_63 chr2R:18375318-18375438 0.00015 75_[+1]_37 chr3L:1708238-1708358 0.00015 18_[+1]_94 chr3R:22053288-22053408 0.00015 74_[+1]_38 chr3R:15873093-15873213 0.00017 52_[+1]_60 chr2L:13906001-13906121 0.00017 29_[+1]_83 chrX:18547954-18548074 0.00017 11_[+1]_101 chr2R:25120903-25121023 0.00018 93_[+1]_19 chr2R:10734254-10734374 0.00021 18_[+1]_94 chr2L:7577790-7577910 0.00021 82_[+1]_30 chrX:7666759-7666879 0.00021 6_[+1]_106 chr2R:16813895-16814015 0.00021 39_[+1]_73 chr2L:14478957-14479077 0.00021 67_[+1]_45 chr2R:16211972-16212092 0.00022 108_[+1]_4 chr3R:8160253-8160373 0.00022 74_[+1]_38 chr2R:22533120-22533240 0.00025 55_[+1]_57 chr2L:19480880-19481000 0.00025 63_[+1]_49 chr3R:30449556-30449676 0.00025 55_[+1]_57 chr2L:19235818-19235938 0.00025 95_[+1]_17 chr2L:14422328-14422448 0.00029 35_[+1]_77 chr3R:10648576-10648696 0.00029 77_[+1]_35 chr3R:28673985-28674105 0.00029 59_[+1]_53 chr3L:19289486-19289606 0.00029 54_[+1]_58 chrX:3043028-3043148 0.00029 27_[+1]_85 chr2L:307276-307396 0.00031 51_[+1]_61 chr3L:14640917-14641037 0.00037 17_[+1]_95 chr2L:14374142-14374262 0.00037 26_[+1]_86 chr3L:19158441-19158561 0.0004 70_[+1]_42 chr3R:9142101-9142221 0.0004 30_[+1]_82 chr3R:25283292-25283412 0.0004 50_[+1]_62 chr2L:2636299-2636419 0.00043 100_[+1]_12 chr3R:5125820-5125940 0.00043 58_[+1]_54 chr3R:19499833-19499953 0.00043 65_[+1]_47 chrX:20729165-20729285 0.00043 44_[+1]_68 chr2R:16800575-16800695 0.00043 24_[+1]_88 chr2R:23231461-23231581 0.00043 53_[+1]_59 chr3L:10811251-10811371 0.00045 [+1]_112 chr2R:12439909-12440029 0.00045 89_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGYGGTT width=8 seqs=105 chr3L:7370458-7370578 ( 70) TTGCGGTT 1 chr2R:7071169-7071289 ( 78) TTGCGGTT 1 chr2L:8588026-8588146 ( 49) TTGCGGTT 1 chr2R:17716652-17716772 ( 84) TTGCGGTT 1 chr3R:10699058-10699178 ( 50) TTGCGGTT 1 chr2R:13563709-13563829 ( 59) TTGCGGTT 1 chr2R:14858607-14858727 ( 67) TTGCGGTT 1 chr2L:6411307-6411427 ( 81) TTGCGGTT 1 chr2R:9551724-9551844 ( 45) TTGCGGTT 1 chr2R:15816346-15816466 ( 10) TTGCGGTT 1 chr3R:16743312-16743432 ( 13) TTGCGGTT 1 chr3L:14570391-14570511 ( 97) TTGCGGTT 1 chr2L:16791537-16791657 ( 55) TTGCGGTT 1 chr2L:11961352-11961472 ( 40) TTGCGGTT 1 chr2L:12005878-12005998 ( 85) TTGCGGTT 1 chr3L:3080170-3080290 ( 76) TTGCGGTT 1 chrX:20582987-20583107 ( 79) TTGCGGTT 1 chrX:19326131-19326251 ( 26) TTGCGGTT 1 chr2L:19063263-19063383 ( 56) TTGCGGTT 1 chr3R:4985783-4985903 ( 14) TTGCGGTT 1 chr2L:7133626-7133746 ( 20) TTGCGGTT 1 chr2L:5095578-5095698 ( 77) TTGCGGTC 1 chr3R:7333263-7333383 ( 88) TTGCGGTC 1 chr2R:6535200-6535320 ( 54) TTGCGGTC 1 chr3R:16800365-16800485 ( 73) TTGCGGTC 1 chr3R:24582410-24582530 ( 71) TTGTGGTT 1 chr2R:10598219-10598339 ( 38) TTGTGGTT 1 chr2R:13438987-13439107 ( 41) TTGTGGTT 1 chr3R:9891789-9891909 ( 52) TTGTGGTT 1 chr2R:18311106-18311226 ( 44) TTGTGGTT 1 chr2R:6964601-6964721 ( 38) TTGTGGTT 1 chr2L:19846604-19846724 ( 35) TTGTGGTT 1 chr2L:12458788-12458908 ( 81) TTGTGGTT 1 chr2R:18329753-18329873 ( 74) TTGTGGTT 1 chr2L:7087694-7087814 ( 62) TTGTGGTT 1 chr3R:19803676-19803796 ( 62) TTGTGGTT 1 chr2R:20914048-20914168 ( 17) CTGCGGTT 1 chrX:20690632-20690752 ( 34) CTGCGGTT 1 chr3R:13930414-13930534 ( 86) CTGCGGTT 1 chr2L:10615191-10615311 ( 38) CTGCGGTT 1 chr3L:6050475-6050595 ( 6) CTGCGGTT 1 chr3L:5855487-5855607 ( 46) CTGCGGTT 1 chr3L:473167-473287 ( 79) CTGCGGTT 1 chr3R:23741205-23741325 ( 35) TTGTGGTC 1 chr3R:29075651-29075771 ( 45) TTGTGGTC 1 chr3R:28899136-28899256 ( 54) TTGTGGTC 1 chr2R:22906974-22907094 ( 58) TTGTGGTC 1 chr2L:14540769-14540889 ( 52) TTGTGGTC 1 chr2R:16806915-16807035 ( 84) TTGTGGTC 1 chr2L:1071451-1071571 ( 3) TTGTGGTC 1 chr3R:9376961-9377081 ( 13) TTGTGGTC 1 chr3R:23911452-23911572 ( 39) TTGTGGTC 1 chr2R:22197553-22197673 ( 77) TTGCGGTG 1 chr2L:14463340-14463460 ( 80) TTGCGGTG 1 chr2R:16209581-16209701 ( 56) CTGCGGTC 1 chr3L:10773742-10773862 ( 110) CTGCGGTC 1 chr2L:9620144-9620264 ( 18) CTGCGGTC 1 chr3R:10559212-10559332 ( 92) TTGCGGCT 1 chr2R:18322911-18323031 ( 83) CTGTGGTT 1 chr3L:6498219-6498339 ( 3) TTGCGGCT 1 chr3L:424689-424809 ( 30) TTGCGGCT 1 chrX:20694152-20694272 ( 39) CTGTGGTT 1 chr3R:25549822-25549942 ( 43) TTGCGGCT 1 chr3R:8225669-8225789 ( 83) GTGCGGTT 1 chr2L:14539557-14539677 ( 75) GTGCGGTT 1 chr2R:19847596-19847716 ( 51) GTGCGGTT 1 chr2L:12589052-12589172 ( 72) TTGTGGTG 1 chr3R:16329949-16330069 ( 50) TTGTGGTG 1 chr2R:18375318-18375438 ( 76) CTGTGGTC 1 chr3L:1708238-1708358 ( 19) TTGCGGCC 1 chr3R:22053288-22053408 ( 75) CTGTGGTC 1 chr3R:15873093-15873213 ( 53) TTGTGGCT 1 chr2L:13906001-13906121 ( 30) CTGCGGTG 1 chrX:18547954-18548074 ( 12) CTGCGGTG 1 chr2R:25120903-25121023 ( 94) GTGCGGTC 1 chr2R:10734254-10734374 ( 19) CTGCGGCT 1 chr2L:7577790-7577910 ( 83) TTGGGGTT 1 chrX:7666759-7666879 ( 7) GTGTGGTT 1 chr2R:16813895-16814015 ( 40) GTGTGGTT 1 chr2L:14478957-14479077 ( 68) CTGCGGCT 1 chr2R:16211972-16212092 ( 109) TTGTGGCC 1 chr3R:8160253-8160373 ( 75) TTGTGGCC 1 chr2R:22533120-22533240 ( 56) TTGCGGGT 1 chr2L:19480880-19481000 ( 64) TTGCGGCG 1 chr3R:30449556-30449676 ( 56) TTGCGGGT 1 chr2L:19235818-19235938 ( 96) CTGTGGTG 1 chr2L:14422328-14422448 ( 36) GTGTGGTC 1 chr3R:10648576-10648696 ( 78) ATGCGGTT 1 chr3R:28673985-28674105 ( 60) ATGCGGTT 1 chr3L:19289486-19289606 ( 55) TTGGGGTC 1 chrX:3043028-3043148 ( 28) TTGGGGTC 1 chr2L:307276-307396 ( 52) GTGCGGTG 1 chr3L:14640917-14641037 ( 18) TTGTGGGT 1 chr2L:14374142-14374262 ( 27) ATGCGGTC 1 chr3L:19158441-19158561 ( 71) CTGTGGCC 1 chr3R:9142101-9142221 ( 31) CTGTGGCC 1 chr3R:25283292-25283412 ( 51) ATGTGGTT 1 chr2L:2636299-2636419 ( 101) GTGTGGTG 1 chr3R:5125820-5125940 ( 59) CTGCGGGT 1 chr3R:19499833-19499953 ( 66) CTGCGGCG 1 chrX:20729165-20729285 ( 45) TTGGGGTG 1 chr2R:16800575-16800695 ( 25) TTGGGGTG 1 chr2R:23231461-23231581 ( 54) CTGCGGCG 1 chr3L:10811251-10811371 ( 1) CTGGGGTC 1 chr2R:12439909-12440029 ( 90) GTGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.24132 E= 1.4e-056 -289 8 -120 121 -1336 -1336 -1336 188 -1336 -1336 219 -1336 -1336 136 -194 42 -1336 -1336 219 -1336 -1336 -1336 219 -1336 -1336 -57 -253 158 -1336 34 -72 110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 1.4e-056 0.038095 0.238095 0.095238 0.628571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.580952 0.057143 0.361905 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.152381 0.038095 0.809524 0.000000 0.285714 0.133333 0.580952 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGGTT MEME-1 regular expression -------------------------------------------------------------------------------- [TC]TG[CT]GGT[TC] -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF AACCRCAA MEME-2 width = 8 sites = 116 llr = 880 E-value = 2.8e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 78:251a8 pos.-specific C ::a8:9:1 probability G 22::5::1 matrix T :::::::: bits 2.2 * 2.0 * 1.8 * ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ****** (10.9 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACCACAA consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23538744-23538864 52 1.64e-05 TTTACCGATC AACCGCAA AAGTTCCAGT chr2L:7577790-7577910 104 1.64e-05 CATCAAAGTG AACCGCAA GACAATGGA chr2R:7773873-7773993 37 1.64e-05 CTCGAGTGGC AACCGCAA ACATTTCGAG chr2R:13621392-13621512 26 1.64e-05 CTCCTGTGGc aaccgcaa caatagcagc chr3R:18585385-18585505 15 1.64e-05 TACCGTTTTT AACCGCAA GCTTATCGTG chr2R:6560206-6560326 110 1.64e-05 CAACGATACA AACCGCAA CCC chr3L:17895979-17896099 53 1.64e-05 CTCGCTTACA AACCGCAA ATACTTCTCT chr2L:18621400-18621520 53 1.64e-05 GACTACTAGT AACCGCAA GACGATTGCT chr2L:2133090-2133210 14 1.64e-05 TCTTTATCAA AACCGCAA AAAACATATG chr2R:16800575-16800695 104 1.64e-05 CAAAAAACCA AACCGCAA ACAGCCGAT chr2R:16813895-16814015 92 1.64e-05 GGAATTAATG AACCGCAA CAGCACCGCC chrX:20582987-20583107 87 1.64e-05 TGTTGCGGTT AACCGCAA CTTATAATTG chr2L:9620144-9620264 60 1.64e-05 GGCAACAATC AACCGCAA ATACGTATGT chr3R:15121976-15122096 55 1.64e-05 AAATGAGCTC AACCGCAA AATATCGATT chr3R:12329956-12330076 34 1.64e-05 CCACGGTGAC AACCGCAA CCAGGCCACA chr3R:26031888-26032008 45 3.78e-05 GCCAGCAATC AACCACAA ACCCACTTCA chr3L:10857258-10857378 92 3.78e-05 TTCAAAAATC AACCACAA ATCACAACAA chrX:18505277-18505397 53 3.78e-05 GTATACAATC AACCACAA CCGCATCATG chr2L:3619106-3619226 52 3.78e-05 TCCAATCAGA AACCACAA CAAACACTTT chr2L:7216382-7216502 38 3.78e-05 GCATTATCTA AACCACAA TTCTAATCTT chr2R:12008918-12009038 64 3.78e-05 ATGGAGCATA AACCACAA TCGCTGTAAA chr3R:19499833-19499953 36 3.78e-05 AGCAAAGTCA AACCACAA AACGGCATTT chr3L:5980669-5980789 48 3.78e-05 CACAGAAATC AACCACAA TGAGAGTGTG chr3L:13071294-13071414 66 3.78e-05 TTTATGTAAA AACCACAA ATGGGAAATG chr2R:11189373-11189493 87 3.78e-05 CCATTCAAGA AACCACAA TCGTTATTAA chrX:20689717-20689837 103 3.78e-05 CAAAACAACA AACCACAA TTCACTTACA chrX:19239535-19239655 62 3.78e-05 CTTCAAAACT AACCACAA ATGGCTTGCA chr2L:1071451-1071571 25 3.78e-05 AAAAACTTGT AACCACAA AAGTTTGTAT chr3L:4206027-4206147 24 3.78e-05 GGCTGGTGGT AACCACAA TACGTTTAGT chr2L:6194170-6194290 42 3.78e-05 ACTAAAATAT AACCACAA AGACAACGCG chr2L:12348675-12348795 63 3.78e-05 AAAAAAGCAA AACCACAA TAAAGCAAAC chr3R:25549822-25549942 62 3.78e-05 ACCGACACAA AACCACAA TGTCTAAAAA chr2L:2636299-2636419 41 5.05e-05 CCCCCCTTTA GACCGCAA CAAAGCAAAA chr3R:9142101-9142221 45 5.05e-05 GGCCTTTTCC GACCGCAA TGTTTGGATG chr3L:10862372-10862492 31 5.05e-05 TATCAAACTA GACCGCAA CGAAACCAAC chrX:17409989-17410109 36 5.05e-05 GCTTTGACAA GACCGCAA ATAAAGCAGT chr3L:958780-958900 66 5.05e-05 CCTGATAACA GACCGCAA TCGAAACCGA chrX:20694152-20694272 9 5.05e-05 cacaGAGA GACCGCAA TGGAAAAATG chr2R:9149399-9149519 61 5.05e-05 CTTATCAGTT GACCGCAA CAAAAGTAAA chr3R:26332217-26332337 86 5.05e-05 AAATGTTACT GACCGCAA TTAGCACTCA chr2R:16215934-16216054 43 5.05e-05 TCATTAGGCG GACCGCAA ACAAGGCGAA chr3R:18783427-18783547 111 7.96e-05 CTAATCTCGT GACCACAA TT chr3R:29552946-29553066 41 7.96e-05 tgtgtgAGGC AGCCGCAA TTGCCACAAC chr2L:14267392-14267512 33 7.96e-05 TAGTTTTATA GACCACAA AACGGAACAT chr3L:19155715-19155835 11 7.96e-05 TATAAATACC GACCACAA ACATTGGCTG chr3R:21501395-21501515 39 7.96e-05 CTAATGAATT GACCACAA AGCCACCAAA chr3R:9144411-9144531 49 7.96e-05 CTGTCAACAT GACCACAA AATGTTTCAC chr3L:21261754-21261874 64 7.96e-05 GCTACCGCCA Gaccacaa catacaacaa chr3L:12057589-12057709 62 9.60e-05 CTGTTGCCCA AGCCACAA ACATTTCGAT chr2R:10734254-10734374 49 9.60e-05 AATGTTTATC AGCCACAA AGATTTTGGT chr3R:29075651-29075771 10 9.60e-05 AGAACAGCC AGCCACAA ATGGCCATAA chr2L:19482393-19482513 16 9.60e-05 GCCGGAAGCC AGCCACAA AAGGTTAAAT chr3R:13912166-13912286 64 9.60e-05 GGTCGGCGAA AGCCACAA ATATCTGTCG chr2L:5445616-5445736 30 9.60e-05 GCACAAACAC AGCCACAA TTTCCCGAGT chr3R:9376961-9377081 87 9.60e-05 ATAAGTGAGC AGCCACAA GATGTTGCAT chr2R:7417272-7417392 19 1.09e-04 GGTCATCTCG AACCGCAG AACGTGGTGT chr2L:14490111-14490231 16 1.09e-04 AGGGAAAACC AACCGCAG AAGTTAATCG chr3L:6336576-6336696 15 1.09e-04 AAAACTGGAA AACCGCAG ACCTTTATCT chr2R:12538827-12538947 36 1.09e-04 GGCGGGGGAA AACCGCAG ACGTCGGCGA chr2L:9142974-9143094 50 1.09e-04 CATAAATACA AACCGCAG GCATTTTAAT chrX:5885024-5885144 5 1.25e-04 TTGA AACCACAG ACCTTGAACG chr2L:8853939-8854059 104 1.25e-04 GTAAAAAAGA AACCACAG GCCTGAATA chr2R:11638299-11638419 80 1.46e-04 GGAGTTACCA AACAGCAA GGCAAACAAC chr3L:1931427-1931547 49 1.46e-04 AAGTAAGCGA AACAGCAA ACCGAGAAGC chr2L:4038025-4038145 89 1.82e-04 CAGGGAAAAG AACAACAA GGGCGGTGGA chr2R:21475037-21475157 1 1.82e-04 . aacaacaa acgcaacaac chr3R:12717701-12717821 6 1.82e-04 TAAAT AACAACAA AGAGCAGGGG chr2L:14454474-14454594 46 1.82e-04 ACCAAACGTA AACAACAA AGAAGACAAA chr2L:308324-308444 65 1.82e-04 CACCACCCAC AACAACAA TGCCAGCAGC chr3L:8750246-8750366 86 1.82e-04 GAGCAGCCCA AACAACAA CACATCGCCA chr3R:4903655-4903775 71 1.82e-04 TGGGTGGCTC GGCCGCAA CCCTTAATTG chr2R:9028253-9028373 34 1.82e-04 CCCAATTAAC AACAACAA GCCGATAAAC chrX:20731655-20731775 47 1.95e-04 AAAAGCAAAG GGCCACAA AGGATACCCA chr3L:22390426-22390546 5 1.95e-04 AAAA GGCCACAA ATCGGCGGGG chr2R:15717726-15717846 73 1.95e-04 ACAAATTGAT GGCCACAA GCGTCAAAGA chr2L:14537981-14538101 44 2.18e-04 GGGGGCGATG GACCGCAG AGGGGAACGG chr2L:12005878-12005998 6 2.18e-04 CACCG AACCGCAC CATCGCACCA chr3L:510996-511116 98 2.57e-04 CACAAAGAGG AGCCGCAG TAAAGGGGCA chr3L:19158441-19158561 29 2.57e-04 AGTCCGCTCT AACCACAC CAGCCCCCCC chr2L:11296457-11296577 49 2.57e-04 GGACGTTATT AGCCGCAG GGGAAGTTGA chr2L:16389302-16389422 38 2.57e-04 CGGTAGCGAA AACCACAC GCACCCACAC chr3R:26655697-26655817 66 2.57e-04 CAAATCCCTA AACCACAC AAAAATGCCA chr3R:12645042-12645162 15 2.57e-04 CACCCACTAA AACCACAC TCATATATCT chr2L:8715641-8715761 108 2.57e-04 CAGACGCAGC AGCCGCAG AACTT chr3L:7370458-7370578 35 2.73e-04 TGTGGGcaga gacagcaa caccagcagc chr3R:9473547-9473667 61 3.07e-04 CGAATTCCGA AACCGAAA GCTAGGCCAA chr3L:14114133-14114253 24 3.07e-04 CCGTACTGCA AACCGAAA CGGTCTCAAT chr2L:7133626-7133746 65 3.07e-04 ATCATAAGCT AACCGAAA AGTGTGTCAC chr3L:3624979-3625099 13 3.72e-04 CTCTCTTTCT AACCGCAT GCCCCGTCCC chr3R:9352469-9352589 81 3.72e-04 CTGCGCTCCA CACCGCAA CTATAAATCA chr2R:13563709-13563829 87 3.72e-04 GGCCCATGAT CACCGCAA ATCCCCTGCA chr2L:14537205-14537325 23 3.72e-04 CACAGTCGAA AACCGCAT AAATTTAAAT chr2L:14540769-14540889 90 3.72e-04 AGCGCTAATG AGCAGCAA TTAATAAAGC chr2L:16711989-16712109 30 3.72e-04 TGGCCAAGCT AACCGCAT GCATAATGAT chr2R:11274409-11274529 62 3.72e-04 AGGGGTTCTC CACCGCAA CAAATTGATA chr3L:5855487-5855607 20 3.72e-04 AGAAATCATT AGCAGCAA ACGGCGGCGC chr3L:1708238-1708358 96 3.99e-04 AGAAACGAAA AACCAAAA ACCCAAAGCC chr2R:18329753-18329873 29 3.99e-04 caaaccaaac aaccaaAA GAAAGACGAT chr3R:13231324-13231444 33 3.99e-04 TAAAACTGAA AACCAAAA TTAGCTCCTA chr3L:12638521-12638641 105 3.99e-04 GGCAAACAAA AACCAAAA CAAAAACA chr2R:18229419-18229539 63 4.57e-04 CCACACAAAT AGCAACAA ATCAAAATGG chr2R:19230719-19230839 63 4.57e-04 AAGATAAGGC CACCACAA CAAAGGCCAG chr2R:19837687-19837807 27 4.57e-04 ATAAACCCAT AACCACAT AATTAGTTTT chrX:18547954-18548074 75 4.83e-04 ACACAGAAGA AACAGCAG AAGAATTTAG chr3L:6050475-6050595 45 4.83e-04 CAAGTCCGAT AACAGCAG ATACTTTTTT chr3L:424689-424809 62 5.34e-04 AAAATGCTGT AACAACAG GGAAAAGGAC chr2R:20889914-20890034 67 5.34e-04 CCTTGTGGCA GGCCGCAG ATATTAGCAC chr3L:4077028-4077148 59 5.34e-04 GGCAATTTCA GGCCGCAG CACTTTAATT chr2R:5736830-5736950 36 5.73e-04 GTCGCTGCAG AGCCACAC CGCATAATTT chr2R:15816346-15816466 87 5.97e-04 TAAGTTTAAA GACCGCAT CTCGGCGATC chr3L:17365236-17365356 25 5.97e-04 GAAAAATCCT GGCAGCAA GGAGTGGTTC chr3L:14640917-14641037 32 6.34e-04 GGGTTTTATT GACCAAAA GCTACCGGAA chr3R:24582410-24582530 110 6.88e-04 TTGGGGGCGG GGCAACAA ACA chr3L:6920374-6920494 105 6.88e-04 CGAGGACAAC GGCAACAA AGGATAAC chr3R:10648576-10648696 37 7.37e-04 CAGCGGCCCA AGCCAAAA AGTTCAAGAT chr3R:28573419-28573539 13 8.49e-04 caataacaaa aacaacac aacTCCTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23538744-23538864 1.6e-05 51_[+2]_61 chr2L:7577790-7577910 1.6e-05 103_[+2]_9 chr2R:7773873-7773993 1.6e-05 36_[+2]_76 chr2R:13621392-13621512 1.6e-05 25_[+2]_87 chr3R:18585385-18585505 1.6e-05 14_[+2]_98 chr2R:6560206-6560326 1.6e-05 109_[+2]_3 chr3L:17895979-17896099 1.6e-05 52_[+2]_60 chr2L:18621400-18621520 1.6e-05 52_[+2]_60 chr2L:2133090-2133210 1.6e-05 13_[+2]_99 chr2R:16800575-16800695 1.6e-05 103_[+2]_9 chr2R:16813895-16814015 1.6e-05 91_[+2]_21 chrX:20582987-20583107 1.6e-05 86_[+2]_26 chr2L:9620144-9620264 1.6e-05 59_[+2]_53 chr3R:15121976-15122096 1.6e-05 54_[+2]_58 chr3R:12329956-12330076 1.6e-05 33_[+2]_79 chr3R:26031888-26032008 3.8e-05 44_[+2]_68 chr3L:10857258-10857378 3.8e-05 91_[+2]_21 chrX:18505277-18505397 3.8e-05 52_[+2]_60 chr2L:3619106-3619226 3.8e-05 51_[+2]_61 chr2L:7216382-7216502 3.8e-05 37_[+2]_75 chr2R:12008918-12009038 3.8e-05 63_[+2]_49 chr3R:19499833-19499953 3.8e-05 35_[+2]_77 chr3L:5980669-5980789 3.8e-05 47_[+2]_65 chr3L:13071294-13071414 3.8e-05 65_[+2]_47 chr2R:11189373-11189493 3.8e-05 86_[+2]_26 chrX:20689717-20689837 3.8e-05 102_[+2]_10 chrX:19239535-19239655 3.8e-05 61_[+2]_51 chr2L:1071451-1071571 3.8e-05 24_[+2]_88 chr3L:4206027-4206147 3.8e-05 23_[+2]_89 chr2L:6194170-6194290 3.8e-05 41_[+2]_71 chr2L:12348675-12348795 3.8e-05 62_[+2]_50 chr3R:25549822-25549942 3.8e-05 61_[+2]_51 chr2L:2636299-2636419 5e-05 40_[+2]_72 chr3R:9142101-9142221 5e-05 44_[+2]_68 chr3L:10862372-10862492 5e-05 30_[+2]_82 chrX:17409989-17410109 5e-05 35_[+2]_77 chr3L:958780-958900 5e-05 65_[+2]_47 chrX:20694152-20694272 5e-05 8_[+2]_104 chr2R:9149399-9149519 5e-05 60_[+2]_52 chr3R:26332217-26332337 5e-05 85_[+2]_27 chr2R:16215934-16216054 5e-05 42_[+2]_70 chr3R:18783427-18783547 8e-05 110_[+2]_2 chr3R:29552946-29553066 8e-05 40_[+2]_72 chr2L:14267392-14267512 8e-05 32_[+2]_80 chr3L:19155715-19155835 8e-05 10_[+2]_102 chr3R:21501395-21501515 8e-05 38_[+2]_74 chr3R:9144411-9144531 8e-05 48_[+2]_64 chr3L:21261754-21261874 8e-05 63_[+2]_49 chr3L:12057589-12057709 9.6e-05 61_[+2]_51 chr2R:10734254-10734374 9.6e-05 48_[+2]_64 chr3R:29075651-29075771 9.6e-05 9_[+2]_103 chr2L:19482393-19482513 9.6e-05 15_[+2]_97 chr3R:13912166-13912286 9.6e-05 63_[+2]_49 chr2L:5445616-5445736 9.6e-05 29_[+2]_83 chr3R:9376961-9377081 9.6e-05 86_[+2]_26 chr2R:7417272-7417392 0.00011 18_[+2]_94 chr2L:14490111-14490231 0.00011 15_[+2]_97 chr3L:6336576-6336696 0.00011 14_[+2]_98 chr2R:12538827-12538947 0.00011 35_[+2]_77 chr2L:9142974-9143094 0.00011 49_[+2]_63 chrX:5885024-5885144 0.00013 4_[+2]_108 chr2L:8853939-8854059 0.00013 103_[+2]_9 chr2R:11638299-11638419 0.00015 79_[+2]_33 chr3L:1931427-1931547 0.00015 48_[+2]_64 chr2L:4038025-4038145 0.00018 88_[+2]_24 chr2R:21475037-21475157 0.00018 [+2]_112 chr3R:12717701-12717821 0.00018 5_[+2]_107 chr2L:14454474-14454594 0.00018 45_[+2]_67 chr2L:308324-308444 0.00018 64_[+2]_48 chr3L:8750246-8750366 0.00018 85_[+2]_27 chr3R:4903655-4903775 0.00018 70_[+2]_42 chr2R:9028253-9028373 0.00018 33_[+2]_79 chrX:20731655-20731775 0.0002 46_[+2]_66 chr3L:22390426-22390546 0.0002 4_[+2]_108 chr2R:15717726-15717846 0.0002 72_[+2]_40 chr2L:14537981-14538101 0.00022 43_[+2]_69 chr2L:12005878-12005998 0.00022 5_[+2]_107 chr3L:510996-511116 0.00026 97_[+2]_15 chr3L:19158441-19158561 0.00026 28_[+2]_84 chr2L:11296457-11296577 0.00026 48_[+2]_64 chr2L:16389302-16389422 0.00026 37_[+2]_75 chr3R:26655697-26655817 0.00026 65_[+2]_47 chr3R:12645042-12645162 0.00026 14_[+2]_98 chr2L:8715641-8715761 0.00026 107_[+2]_5 chr3L:7370458-7370578 0.00027 34_[+2]_78 chr3R:9473547-9473667 0.00031 60_[+2]_52 chr3L:14114133-14114253 0.00031 23_[+2]_89 chr2L:7133626-7133746 0.00031 64_[+2]_48 chr3L:3624979-3625099 0.00037 12_[+2]_100 chr3R:9352469-9352589 0.00037 80_[+2]_32 chr2R:13563709-13563829 0.00037 86_[+2]_26 chr2L:14537205-14537325 0.00037 22_[+2]_90 chr2L:14540769-14540889 0.00037 89_[+2]_23 chr2L:16711989-16712109 0.00037 29_[+2]_83 chr2R:11274409-11274529 0.00037 61_[+2]_51 chr3L:5855487-5855607 0.00037 19_[+2]_93 chr3L:1708238-1708358 0.0004 95_[+2]_17 chr2R:18329753-18329873 0.0004 28_[+2]_84 chr3R:13231324-13231444 0.0004 32_[+2]_80 chr3L:12638521-12638641 0.0004 104_[+2]_8 chr2R:18229419-18229539 0.00046 62_[+2]_50 chr2R:19230719-19230839 0.00046 62_[+2]_50 chr2R:19837687-19837807 0.00046 26_[+2]_86 chrX:18547954-18548074 0.00048 74_[+2]_38 chr3L:6050475-6050595 0.00048 44_[+2]_68 chr3L:424689-424809 0.00053 61_[+2]_51 chr2R:20889914-20890034 0.00053 66_[+2]_46 chr3L:4077028-4077148 0.00053 58_[+2]_54 chr2R:5736830-5736950 0.00057 35_[+2]_77 chr2R:15816346-15816466 0.0006 86_[+2]_26 chr3L:17365236-17365356 0.0006 24_[+2]_88 chr3L:14640917-14641037 0.00063 31_[+2]_81 chr3R:24582410-24582530 0.00069 109_[+2]_3 chr3L:6920374-6920494 0.00069 104_[+2]_8 chr3R:10648576-10648696 0.00074 36_[+2]_76 chr3R:28573419-28573539 0.00085 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACCRCAA width=8 seqs=116 chr3R:23538744-23538864 ( 52) AACCGCAA 1 chr2L:7577790-7577910 ( 104) AACCGCAA 1 chr2R:7773873-7773993 ( 37) AACCGCAA 1 chr2R:13621392-13621512 ( 26) AACCGCAA 1 chr3R:18585385-18585505 ( 15) AACCGCAA 1 chr2R:6560206-6560326 ( 110) AACCGCAA 1 chr3L:17895979-17896099 ( 53) AACCGCAA 1 chr2L:18621400-18621520 ( 53) AACCGCAA 1 chr2L:2133090-2133210 ( 14) AACCGCAA 1 chr2R:16800575-16800695 ( 104) AACCGCAA 1 chr2R:16813895-16814015 ( 92) AACCGCAA 1 chrX:20582987-20583107 ( 87) AACCGCAA 1 chr2L:9620144-9620264 ( 60) AACCGCAA 1 chr3R:15121976-15122096 ( 55) AACCGCAA 1 chr3R:12329956-12330076 ( 34) AACCGCAA 1 chr3R:26031888-26032008 ( 45) AACCACAA 1 chr3L:10857258-10857378 ( 92) AACCACAA 1 chrX:18505277-18505397 ( 53) AACCACAA 1 chr2L:3619106-3619226 ( 52) AACCACAA 1 chr2L:7216382-7216502 ( 38) AACCACAA 1 chr2R:12008918-12009038 ( 64) AACCACAA 1 chr3R:19499833-19499953 ( 36) AACCACAA 1 chr3L:5980669-5980789 ( 48) AACCACAA 1 chr3L:13071294-13071414 ( 66) AACCACAA 1 chr2R:11189373-11189493 ( 87) AACCACAA 1 chrX:20689717-20689837 ( 103) AACCACAA 1 chrX:19239535-19239655 ( 62) AACCACAA 1 chr2L:1071451-1071571 ( 25) AACCACAA 1 chr3L:4206027-4206147 ( 24) AACCACAA 1 chr2L:6194170-6194290 ( 42) AACCACAA 1 chr2L:12348675-12348795 ( 63) AACCACAA 1 chr3R:25549822-25549942 ( 62) AACCACAA 1 chr2L:2636299-2636419 ( 41) GACCGCAA 1 chr3R:9142101-9142221 ( 45) GACCGCAA 1 chr3L:10862372-10862492 ( 31) GACCGCAA 1 chrX:17409989-17410109 ( 36) GACCGCAA 1 chr3L:958780-958900 ( 66) GACCGCAA 1 chrX:20694152-20694272 ( 9) GACCGCAA 1 chr2R:9149399-9149519 ( 61) GACCGCAA 1 chr3R:26332217-26332337 ( 86) GACCGCAA 1 chr2R:16215934-16216054 ( 43) GACCGCAA 1 chr3R:18783427-18783547 ( 111) GACCACAA 1 chr3R:29552946-29553066 ( 41) AGCCGCAA 1 chr2L:14267392-14267512 ( 33) GACCACAA 1 chr3L:19155715-19155835 ( 11) GACCACAA 1 chr3R:21501395-21501515 ( 39) GACCACAA 1 chr3R:9144411-9144531 ( 49) GACCACAA 1 chr3L:21261754-21261874 ( 64) GACCACAA 1 chr3L:12057589-12057709 ( 62) AGCCACAA 1 chr2R:10734254-10734374 ( 49) AGCCACAA 1 chr3R:29075651-29075771 ( 10) AGCCACAA 1 chr2L:19482393-19482513 ( 16) AGCCACAA 1 chr3R:13912166-13912286 ( 64) AGCCACAA 1 chr2L:5445616-5445736 ( 30) AGCCACAA 1 chr3R:9376961-9377081 ( 87) AGCCACAA 1 chr2R:7417272-7417392 ( 19) AACCGCAG 1 chr2L:14490111-14490231 ( 16) AACCGCAG 1 chr3L:6336576-6336696 ( 15) AACCGCAG 1 chr2R:12538827-12538947 ( 36) AACCGCAG 1 chr2L:9142974-9143094 ( 50) AACCGCAG 1 chrX:5885024-5885144 ( 5) AACCACAG 1 chr2L:8853939-8854059 ( 104) AACCACAG 1 chr2R:11638299-11638419 ( 80) AACAGCAA 1 chr3L:1931427-1931547 ( 49) AACAGCAA 1 chr2L:4038025-4038145 ( 89) AACAACAA 1 chr2R:21475037-21475157 ( 1) AACAACAA 1 chr3R:12717701-12717821 ( 6) AACAACAA 1 chr2L:14454474-14454594 ( 46) AACAACAA 1 chr2L:308324-308444 ( 65) AACAACAA 1 chr3L:8750246-8750366 ( 86) AACAACAA 1 chr3R:4903655-4903775 ( 71) GGCCGCAA 1 chr2R:9028253-9028373 ( 34) AACAACAA 1 chrX:20731655-20731775 ( 47) GGCCACAA 1 chr3L:22390426-22390546 ( 5) GGCCACAA 1 chr2R:15717726-15717846 ( 73) GGCCACAA 1 chr2L:14537981-14538101 ( 44) GACCGCAG 1 chr2L:12005878-12005998 ( 6) AACCGCAC 1 chr3L:510996-511116 ( 98) AGCCGCAG 1 chr3L:19158441-19158561 ( 29) AACCACAC 1 chr2L:11296457-11296577 ( 49) AGCCGCAG 1 chr2L:16389302-16389422 ( 38) AACCACAC 1 chr3R:26655697-26655817 ( 66) AACCACAC 1 chr3R:12645042-12645162 ( 15) AACCACAC 1 chr2L:8715641-8715761 ( 108) AGCCGCAG 1 chr3L:7370458-7370578 ( 35) GACAGCAA 1 chr3R:9473547-9473667 ( 61) AACCGAAA 1 chr3L:14114133-14114253 ( 24) AACCGAAA 1 chr2L:7133626-7133746 ( 65) AACCGAAA 1 chr3L:3624979-3625099 ( 13) AACCGCAT 1 chr3R:9352469-9352589 ( 81) CACCGCAA 1 chr2R:13563709-13563829 ( 87) CACCGCAA 1 chr2L:14537205-14537325 ( 23) AACCGCAT 1 chr2L:14540769-14540889 ( 90) AGCAGCAA 1 chr2L:16711989-16712109 ( 30) AACCGCAT 1 chr2R:11274409-11274529 ( 62) CACCGCAA 1 chr3L:5855487-5855607 ( 20) AGCAGCAA 1 chr3L:1708238-1708358 ( 96) AACCAAAA 1 chr2R:18329753-18329873 ( 29) AACCAAAA 1 chr3R:13231324-13231444 ( 33) AACCAAAA 1 chr3L:12638521-12638641 ( 105) AACCAAAA 1 chr2R:18229419-18229539 ( 63) AGCAACAA 1 chr2R:19230719-19230839 ( 63) CACCACAA 1 chr2R:19837687-19837807 ( 27) AACCACAT 1 chrX:18547954-18548074 ( 75) AACAGCAG 1 chr3L:6050475-6050595 ( 45) AACAGCAG 1 chr3L:424689-424809 ( 62) AACAACAG 1 chr2R:20889914-20890034 ( 67) GGCCGCAG 1 chr3L:4077028-4077148 ( 59) GGCCGCAG 1 chr2R:5736830-5736950 ( 36) AGCCACAC 1 chr2R:15816346-15816466 ( 87) GACCGCAT 1 chr3L:17365236-17365356 ( 25) GGCAGCAA 1 chr3L:14640917-14641037 ( 32) GACCAAAA 1 chr3R:24582410-24582530 ( 110) GGCAACAA 1 chr3L:6920374-6920494 ( 105) GGCAACAA 1 chr3R:10648576-10648696 ( 37) AGCCAAAA 1 chr3R:28573419-28573539 ( 13) AACAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 2.8e-048 135 -271 14 -1350 147 -1350 -3 -1350 -1350 215 -1350 -1350 -72 188 -1350 -1350 87 -1350 114 -1350 -187 203 -1350 -1350 182 -1350 -1350 -1350 142 -190 -67 -265 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 2.8e-048 0.724138 0.034483 0.241379 0.000000 0.784483 0.000000 0.215517 0.000000 0.000000 1.000000 0.000000 0.000000 0.172414 0.827586 0.000000 0.000000 0.517241 0.000000 0.482759 0.000000 0.077586 0.922414 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.758621 0.060345 0.137931 0.043103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACCRCAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][AG]CC[AG]CAA -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GGDGWKGG MEME-3 width = 8 sites = 24 llr = 223 E-value = 4.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3:4::: pos.-specific C :::::::: probability G aa5a:6aa matrix T ::3:64:: bits 2.2 ** * ** 2.0 ** * ** 1.8 ** * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.1 ** * *** (13.4 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGTGGG consensus T AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18329753-18329873 107 6.55e-06 GGTTTCGGGA GGGGTGGG AGGAAA chrX:20690632-20690752 105 2.15e-05 TTTCTGCGAG GGGGAGGG ATCTTGCG chr2L:307276-307396 24 2.15e-05 TGTGCTTGAT GGGGAGGG TGGTAGGAGG chr2L:11296457-11296577 105 2.15e-05 TTTACCTTAG GGGGTTGG TTTGATTT chr3L:14570391-14570511 46 2.15e-05 ttggcaagtt ggggttgg gcattgggcg chr2L:19235818-19235938 54 2.15e-05 TTCTGCCGAG GGGGTTGG TTGGTTATGA chrX:20689717-20689837 7 2.15e-05 CCAGCG GGGGAGGG GGATGGGGAG chr3L:4077028-4077148 8 2.15e-05 CTAATGG GGGGAGGG ATGCGGAAGG chr2L:5445616-5445736 113 2.15e-05 CCTCTAAGTG GGGGTTGG chr2R:11274409-11274529 42 2.15e-05 TGGTGTTAGT GGGGAGGG GTAGGGGTTC chr3R:9142101-9142221 105 2.96e-05 AGAGCGGGAA GGTGTGGG TGGAGCGA chr2R:12008918-12009038 108 2.96e-05 GTGGAGTGTG GGTGTGGG TAGGA chr2L:16389302-16389422 77 2.96e-05 GGATCCGGCG GGTGTGGG TGGTGATTTT chr2R:19768834-19768954 23 2.96e-05 TGTTTATTTG GGTGTGGG TCCCGGTTTG chr3R:4903655-4903775 57 3.81e-05 GGTAGGCGGT GGAGTGGG TGGCTCGGCC chr2L:19846604-19846724 71 3.81e-05 ACGTCGCCGT GGAGTGGG GCAGTTCTTA chr3R:29552946-29553066 105 4.66e-05 GGTTTTGCAA GGGGATGG TTTATTTA chr3L:7938613-7938733 99 6.51e-05 GGCTGCTACT GGTGTTGG AAAATGGGGG chr2R:18571137-18571257 22 6.51e-05 ATCGAGATTT GGTGTTGG GATCTCTAGA chr2R:22533120-22533240 9 8.45e-05 TGTGAGCG GGAGAGGG AGAGTGCGAC chr3L:1931427-1931547 101 8.45e-05 CGTGCCACTG GGAGTTGG GTGTTTCCAA chr2R:9028253-9028373 88 8.45e-05 GACTCGAAGC GGAGAGGG GGAAAAAAAT chr3L:11407596-11407716 105 8.45e-05 GACTGGGTGT GGAGTTGG CTACCGTG chr3R:23741205-23741325 113 9.50e-05 agttgctgat ggtgatgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18329753-18329873 6.5e-06 106_[+3]_6 chrX:20690632-20690752 2.2e-05 104_[+3]_8 chr2L:307276-307396 2.2e-05 23_[+3]_89 chr2L:11296457-11296577 2.2e-05 104_[+3]_8 chr3L:14570391-14570511 2.2e-05 45_[+3]_67 chr2L:19235818-19235938 2.2e-05 53_[+3]_59 chrX:20689717-20689837 2.2e-05 6_[+3]_106 chr3L:4077028-4077148 2.2e-05 7_[+3]_105 chr2L:5445616-5445736 2.2e-05 112_[+3] chr2R:11274409-11274529 2.2e-05 41_[+3]_71 chr3R:9142101-9142221 3e-05 104_[+3]_8 chr2R:12008918-12009038 3e-05 107_[+3]_5 chr2L:16389302-16389422 3e-05 76_[+3]_36 chr2R:19768834-19768954 3e-05 22_[+3]_90 chr3R:4903655-4903775 3.8e-05 56_[+3]_56 chr2L:19846604-19846724 3.8e-05 70_[+3]_42 chr3R:29552946-29553066 4.7e-05 104_[+3]_8 chr3L:7938613-7938733 6.5e-05 98_[+3]_14 chr2R:18571137-18571257 6.5e-05 21_[+3]_91 chr2R:22533120-22533240 8.5e-05 8_[+3]_104 chr3L:1931427-1931547 8.5e-05 100_[+3]_12 chr2R:9028253-9028373 8.5e-05 87_[+3]_25 chr3L:11407596-11407716 8.5e-05 104_[+3]_8 chr3R:23741205-23741325 9.5e-05 112_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGDGWKGG width=8 seqs=24 chr2R:18329753-18329873 ( 107) GGGGTGGG 1 chrX:20690632-20690752 ( 105) GGGGAGGG 1 chr2L:307276-307396 ( 24) GGGGAGGG 1 chr2L:11296457-11296577 ( 105) GGGGTTGG 1 chr3L:14570391-14570511 ( 46) GGGGTTGG 1 chr2L:19235818-19235938 ( 54) GGGGTTGG 1 chrX:20689717-20689837 ( 7) GGGGAGGG 1 chr3L:4077028-4077148 ( 8) GGGGAGGG 1 chr2L:5445616-5445736 ( 113) GGGGTTGG 1 chr2R:11274409-11274529 ( 42) GGGGAGGG 1 chr3R:9142101-9142221 ( 105) GGTGTGGG 1 chr2R:12008918-12009038 ( 108) GGTGTGGG 1 chr2L:16389302-16389422 ( 77) GGTGTGGG 1 chr2R:19768834-19768954 ( 23) GGTGTGGG 1 chr3R:4903655-4903775 ( 57) GGAGTGGG 1 chr2L:19846604-19846724 ( 71) GGAGTGGG 1 chr3R:29552946-29553066 ( 105) GGGGATGG 1 chr3L:7938613-7938733 ( 99) GGTGTTGG 1 chr2R:18571137-18571257 ( 22) GGTGTTGG 1 chr2R:22533120-22533240 ( 9) GGAGAGGG 1 chr3L:1931427-1931547 ( 101) GGAGTTGG 1 chr2R:9028253-9028373 ( 88) GGAGAGGG 1 chr3L:11407596-11407716 ( 105) GGAGTTGG 1 chr3R:23741205-23741325 ( 113) GGTGATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 4.5e+000 -1123 -1123 219 -1123 -1123 -1123 219 -1123 -18 -1123 106 10 -1123 -1123 219 -1123 40 -1123 -1123 120 -1123 -1123 141 62 -1123 -1123 219 -1123 -1123 -1123 219 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 4.5e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.458333 0.291667 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.000000 0.625000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGWKGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[GTA]G[TA][GT]GG -------------------------------------------------------------------------------- Time 19.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTKWTKK MEME-4 width = 8 sites = 61 llr = 470 E-value = 5.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :::::::: probability G :::52:44 matrix T aaa55a66 bits 2.2 2.0 *** * 1.8 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 **** *** (11.1 bits) 0.9 **** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus TA GG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7773873-7773993 106 2.35e-05 TTTGGATGGC TTTGTTTT TACTTTT chr2L:14403753-14403873 66 2.35e-05 TGATTGTTTA TTTGTTTT CCGCCCATTC chr3L:18237997-18238117 65 2.35e-05 GCATAACTAA TTTGTTTT ACTGGAAATA chr2R:15717726-15717846 43 2.35e-05 CGTTTGATGA TTTGTTTT AGCGATTTGT chr2R:19768834-19768954 37 2.35e-05 TGGGTCCCGG TTTGTTTT TATTTTTGTT chr3L:19289486-19289606 38 2.35e-05 AGGCAACTTA TTTGTTTT CCTGCGGATT chr3R:19803875-19803995 33 2.35e-05 tttttttttg tttgtttt ttGGGGGCTT chr3R:9891789-9891909 37 5.26e-05 GTTCTATGTT TTTTTTTT CGCTGATTTG chr3L:5980669-5980789 5 5.26e-05 CCTG TTTTTTTT CCGAGGCGCA chr3L:6498219-6498339 25 5.26e-05 TGGTTTTTCT TTTTTTTT CCCCGCTGCC chr3L:6050475-6050595 59 5.26e-05 GCAGATACTT TTTTTTTT GGCTTGGGTC chr2L:6194170-6194290 110 5.26e-05 GTTTGCCTCt tttttttt tgt chr2L:8715641-8715761 73 5.26e-05 TTAGGCTTAC TTTTTTTT GGAATTTTTA chr3R:15121976-15122096 113 5.26e-05 TTCTCCTCCT TTTTTTTT chr3R:25283292-25283412 67 5.26e-05 tttgtttttt tttttttt AACTAAGTGC chr2R:16211972-16212092 39 7.16e-05 CCACCCTTCG TTTGTTTG TTCGCCGCAT chr3R:21586132-21586252 93 7.16e-05 GCGCGGTTTG TTTGTTTG CACGTTCATT chr2R:20633697-20633817 85 7.16e-05 CGGTCATACT TTTGTTTG GGCCAGCTTT chr3L:21261754-21261874 30 7.16e-05 GTTGTGATTG TTTGTTTG GAAACCGCCA chr3R:8160253-8160373 66 7.16e-05 TGTTTAACAG TTTGTTTG TTTGTGGCCG chr2R:16209581-16209701 80 9.06e-05 AAGCCGAATG TTTGTTGT TTTCGCAGCT chr2R:6964601-6964721 71 9.06e-05 ACAGGCCGGC TTTGTTGT CGCtgttgtt chr2R:22230078-22230198 59 9.06e-05 ATGTCAGCAC TTTGTTGT GATTTCCGTT chr3R:31884935-31885055 16 9.06e-05 TTTGCCATTT TTTGTTGT AGTTGCAATT chr3R:22053288-22053408 39 9.06e-05 ACGAAGGCAA TTTGTTGT AAATTTATAA chr3R:14069723-14069843 4 1.14e-04 ATA TTTTTTTG GCCCAACATT chr3L:424689-424809 22 1.14e-04 TGTTCCACCC TTTTTTTG TTGCGGCTGA chr2L:7133626-7133746 86 1.38e-04 GTGTCACGCA TTTTTTGT GAATGAAAAA chr3L:10811251-10811371 51 1.72e-04 CGGGAATGAA TTTGTTGG GCCATCAAAA chr3R:10559212-10559332 32 1.72e-04 CCCCTCCTGA TTTGGTTT TGTGAGAGAA chr3R:30449556-30449676 31 1.72e-04 TGCCGGGTTA TTTGGTTT ATGGGTTTAC chr2L:11296457-11296577 113 1.97e-04 AGGGGGTTGG TTTGATTT chr3L:14114133-14114253 51 1.97e-04 TTTAATTTTA TTTGATTT GCAATACGTT chr2R:18571137-18571257 50 1.97e-04 ACTTGCTGCA TTTGATTT ACGGCAAATG chrX:19239535-19239655 96 1.97e-04 CGGTGGAAGA TTTGATTT GCGAGCAAGT chr3R:10699058-10699178 70 2.39e-04 CGTGCAGAGT TTTTGTTT AGTTGGATTA chrX:20729165-20729285 33 2.39e-04 TATATACCCA TTTTTTGG ATGTTTGGGG chr3R:23741205-23741325 3 2.39e-04 GG TTTTTTGG TAGCTTTTTG chr2L:16389302-16389422 91 2.39e-04 TGGGTGGTGA TTTTTTGG TGACTTTCTG chr2L:19063263-19063383 90 2.39e-04 AATTGTTTAT TTTTGTTT ACCTTTAAAT chr2R:23231461-23231581 32 2.39e-04 TCTTTTTATC TTTTGTTT CTGCTGCCGT chr2R:18375318-18375438 95 2.85e-04 TATTTATGCT TTTTATTT GAATTGATTT chrX:20643600-20643720 64 2.85e-04 TGTGCGAGTT TTTGGTTG GTGACCCAAA chr3R:18783427-18783547 17 3.20e-04 TATTTTTAGC TTTGATTG ACTTGGTATC chr3L:4720739-4720859 46 3.20e-04 ATTCTTGAAT TTTGGTGT TAACATATCG chr2R:19847596-19847716 40 3.20e-04 ATTCCACTTT TTTGATTG ACAGTGCGGT chr2R:25120903-25121023 31 3.59e-04 ATTGCCCACC TTTTGTTG CTGCTACCAA chr3R:21869760-21869880 79 3.59e-04 GCTGGGGGGC TTTTGTTG ACCGGCCCAT chr3R:19499833-19499953 58 4.03e-04 GCATTTAAAG TTTTGTGT CTGCGGCGGC chr2R:22197553-22197673 39 4.03e-04 ATTTCTTGAG TTTTGTGT TTATCGCGGT chr2R:18322911-18323031 21 4.03e-04 CAAATGTTAT TTTTATTG TTATTTCAGT chr3L:6336576-6336696 72 4.03e-04 AAACTTGGCG TTTTATTG CCAATTCAAA chr2R:10734254-10734374 61 4.40e-04 CCACAAAGAT TTTGGTGG TGGCACGCTT chr2R:22533120-22533240 86 4.40e-04 AATTCAGTGG TTTTATGT TTACTTATTC chr2R:15816346-15816466 111 4.40e-04 GATCTTTCGT TTTTATGT TT chr3R:16743312-16743432 43 4.40e-04 CAGGCCGAAG TTTTATGT TCTTTTTACG chr2L:12005878-12005998 72 4.40e-04 CCACACCCAT TTTGGTGG GTGGGTTGCG chr2L:9142974-9143094 68 4.40e-04 GCATTTTAAT TTTTATGT TTTAACATGA chr3R:16329949-16330069 37 4.56e-04 TTTTTGACAC TTTGATGG CGCTTTTGTG chr2R:12392762-12392882 96 4.91e-04 CATTCGTATA TTTTATGG TTCCGATTCT chr2L:16711989-16712109 15 4.91e-04 TGAAGCATGG TTTTATGG CCAAGCTAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7773873-7773993 2.4e-05 105_[+4]_7 chr2L:14403753-14403873 2.4e-05 65_[+4]_47 chr3L:18237997-18238117 2.4e-05 64_[+4]_48 chr2R:15717726-15717846 2.4e-05 42_[+4]_70 chr2R:19768834-19768954 2.4e-05 36_[+4]_76 chr3L:19289486-19289606 2.4e-05 37_[+4]_75 chr3R:19803875-19803995 2.4e-05 32_[+4]_80 chr3R:9891789-9891909 5.3e-05 36_[+4]_76 chr3L:5980669-5980789 5.3e-05 4_[+4]_108 chr3L:6498219-6498339 5.3e-05 24_[+4]_88 chr3L:6050475-6050595 5.3e-05 58_[+4]_54 chr2L:6194170-6194290 5.3e-05 109_[+4]_3 chr2L:8715641-8715761 5.3e-05 72_[+4]_40 chr3R:15121976-15122096 5.3e-05 112_[+4] chr3R:25283292-25283412 5.3e-05 66_[+4]_46 chr2R:16211972-16212092 7.2e-05 38_[+4]_74 chr3R:21586132-21586252 7.2e-05 92_[+4]_20 chr2R:20633697-20633817 7.2e-05 84_[+4]_28 chr3L:21261754-21261874 7.2e-05 29_[+4]_83 chr3R:8160253-8160373 7.2e-05 65_[+4]_47 chr2R:16209581-16209701 9.1e-05 79_[+4]_33 chr2R:6964601-6964721 9.1e-05 70_[+4]_42 chr2R:22230078-22230198 9.1e-05 58_[+4]_54 chr3R:31884935-31885055 9.1e-05 15_[+4]_97 chr3R:22053288-22053408 9.1e-05 38_[+4]_74 chr3R:14069723-14069843 0.00011 3_[+4]_109 chr3L:424689-424809 0.00011 21_[+4]_91 chr2L:7133626-7133746 0.00014 85_[+4]_27 chr3L:10811251-10811371 0.00017 50_[+4]_62 chr3R:10559212-10559332 0.00017 31_[+4]_81 chr3R:30449556-30449676 0.00017 30_[+4]_82 chr2L:11296457-11296577 0.0002 112_[+4] chr3L:14114133-14114253 0.0002 50_[+4]_62 chr2R:18571137-18571257 0.0002 49_[+4]_63 chrX:19239535-19239655 0.0002 95_[+4]_17 chr3R:10699058-10699178 0.00024 69_[+4]_43 chrX:20729165-20729285 0.00024 32_[+4]_80 chr3R:23741205-23741325 0.00024 2_[+4]_110 chr2L:16389302-16389422 0.00024 90_[+4]_22 chr2L:19063263-19063383 0.00024 89_[+4]_23 chr2R:23231461-23231581 0.00024 31_[+4]_81 chr2R:18375318-18375438 0.00028 94_[+4]_18 chrX:20643600-20643720 0.00028 63_[+4]_49 chr3R:18783427-18783547 0.00032 16_[+4]_96 chr3L:4720739-4720859 0.00032 45_[+4]_67 chr2R:19847596-19847716 0.00032 39_[+4]_73 chr2R:25120903-25121023 0.00036 30_[+4]_82 chr3R:21869760-21869880 0.00036 78_[+4]_34 chr3R:19499833-19499953 0.0004 57_[+4]_55 chr2R:22197553-22197673 0.0004 38_[+4]_74 chr2R:18322911-18323031 0.0004 20_[+4]_92 chr3L:6336576-6336696 0.0004 71_[+4]_41 chr2R:10734254-10734374 0.00044 60_[+4]_52 chr2R:22533120-22533240 0.00044 85_[+4]_27 chr2R:15816346-15816466 0.00044 110_[+4]_2 chr3R:16743312-16743432 0.00044 42_[+4]_70 chr2L:12005878-12005998 0.00044 71_[+4]_41 chr2L:9142974-9143094 0.00044 67_[+4]_45 chr3R:16329949-16330069 0.00046 36_[+4]_76 chr2R:12392762-12392882 0.00049 95_[+4]_17 chr2L:16711989-16712109 0.00049 14_[+4]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTKWTKK width=8 seqs=61 chr2R:7773873-7773993 ( 106) TTTGTTTT 1 chr2L:14403753-14403873 ( 66) TTTGTTTT 1 chr3L:18237997-18238117 ( 65) TTTGTTTT 1 chr2R:15717726-15717846 ( 43) TTTGTTTT 1 chr2R:19768834-19768954 ( 37) TTTGTTTT 1 chr3L:19289486-19289606 ( 38) TTTGTTTT 1 chr3R:19803875-19803995 ( 33) TTTGTTTT 1 chr3R:9891789-9891909 ( 37) TTTTTTTT 1 chr3L:5980669-5980789 ( 5) TTTTTTTT 1 chr3L:6498219-6498339 ( 25) TTTTTTTT 1 chr3L:6050475-6050595 ( 59) TTTTTTTT 1 chr2L:6194170-6194290 ( 110) TTTTTTTT 1 chr2L:8715641-8715761 ( 73) TTTTTTTT 1 chr3R:15121976-15122096 ( 113) TTTTTTTT 1 chr3R:25283292-25283412 ( 67) TTTTTTTT 1 chr2R:16211972-16212092 ( 39) TTTGTTTG 1 chr3R:21586132-21586252 ( 93) TTTGTTTG 1 chr2R:20633697-20633817 ( 85) TTTGTTTG 1 chr3L:21261754-21261874 ( 30) TTTGTTTG 1 chr3R:8160253-8160373 ( 66) TTTGTTTG 1 chr2R:16209581-16209701 ( 80) TTTGTTGT 1 chr2R:6964601-6964721 ( 71) TTTGTTGT 1 chr2R:22230078-22230198 ( 59) TTTGTTGT 1 chr3R:31884935-31885055 ( 16) TTTGTTGT 1 chr3R:22053288-22053408 ( 39) TTTGTTGT 1 chr3R:14069723-14069843 ( 4) TTTTTTTG 1 chr3L:424689-424809 ( 22) TTTTTTTG 1 chr2L:7133626-7133746 ( 86) TTTTTTGT 1 chr3L:10811251-10811371 ( 51) TTTGTTGG 1 chr3R:10559212-10559332 ( 32) TTTGGTTT 1 chr3R:30449556-30449676 ( 31) TTTGGTTT 1 chr2L:11296457-11296577 ( 113) TTTGATTT 1 chr3L:14114133-14114253 ( 51) TTTGATTT 1 chr2R:18571137-18571257 ( 50) TTTGATTT 1 chrX:19239535-19239655 ( 96) TTTGATTT 1 chr3R:10699058-10699178 ( 70) TTTTGTTT 1 chrX:20729165-20729285 ( 33) TTTTTTGG 1 chr3R:23741205-23741325 ( 3) TTTTTTGG 1 chr2L:16389302-16389422 ( 91) TTTTTTGG 1 chr2L:19063263-19063383 ( 90) TTTTGTTT 1 chr2R:23231461-23231581 ( 32) TTTTGTTT 1 chr2R:18375318-18375438 ( 95) TTTTATTT 1 chrX:20643600-20643720 ( 64) TTTGGTTG 1 chr3R:18783427-18783547 ( 17) TTTGATTG 1 chr3L:4720739-4720859 ( 46) TTTGGTGT 1 chr2R:19847596-19847716 ( 40) TTTGATTG 1 chr2R:25120903-25121023 ( 31) TTTTGTTG 1 chr3R:21869760-21869880 ( 79) TTTTGTTG 1 chr3R:19499833-19499953 ( 58) TTTTGTGT 1 chr2R:22197553-22197673 ( 39) TTTTGTGT 1 chr2R:18322911-18323031 ( 21) TTTTATTG 1 chr3L:6336576-6336696 ( 72) TTTTATTG 1 chr2R:10734254-10734374 ( 61) TTTGGTGG 1 chr2R:22533120-22533240 ( 86) TTTTATGT 1 chr2R:15816346-15816466 ( 111) TTTTATGT 1 chr3R:16743312-16743432 ( 43) TTTTATGT 1 chr2L:12005878-12005998 ( 72) TTTGGTGG 1 chr2L:9142974-9143094 ( 68) TTTTATGT 1 chr3R:16329949-16330069 ( 37) TTTGATGG 1 chr2R:12392762-12392882 ( 96) TTTTATGG 1 chr2L:16711989-16712109 ( 15) TTTTATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 5.6e-001 -1257 -1257 -1257 188 -1257 -1257 -1257 188 -1257 -1257 -1257 188 -1257 -1257 121 86 -11 -1257 -4 95 -1257 -1257 -1257 188 -1257 -1257 72 124 -1257 -1257 78 120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.6e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.508197 0.491803 0.262295 0.000000 0.213115 0.524590 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.360656 0.639344 0.000000 0.000000 0.377049 0.622951 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTKWTKK MEME-4 regular expression -------------------------------------------------------------------------------- TTT[GT][TAG]T[TG][TG] -------------------------------------------------------------------------------- Time 25.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CMACCMCC MEME-5 width = 8 sites = 32 llr = 279 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3a::4:: pos.-specific C a6:7a4aa probability G :1:2:2:: matrix T :::2:::: bits 2.2 * * ** 2.0 * * ** 1.8 * * * ** 1.5 * * * ** Relative 1.3 * * * ** Entropy 1.1 * * * ** (12.6 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCACC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14454474-14454594 91 8.55e-06 GCCGCAAAAA CCACCCCC TTCGACACAC chr3R:28572420-28572540 65 8.55e-06 CCTCCCAGCA CCACCCCC ACCCATCAGC chr2R:22230078-22230198 98 8.55e-06 CTCATCCTCG CCACCCCC CATCCTACCA chr3L:8024466-8024586 50 1.93e-05 TCCCCCCTGT CCACCACC TTTTCTCTTT chr3L:19158441-19158561 95 1.93e-05 tccaccacct ccaccacc tcctcctcct chr2R:16211972-16212092 26 1.93e-05 AAGGCCCTTC CCACCACC CTTCGTTTGT chr3R:22717663-22717783 86 1.93e-05 ATTGGGAAAC CCACCACC GCACTCGAAT chr2L:308324-308444 54 1.93e-05 CAAAGCAGCA CCACCACC CACAACAACA chr2L:4038025-4038145 11 3.00e-05 TAACCCTCTG CAACCCCC GTCTGGCTAA chr2R:23883006-23883126 60 3.00e-05 GGTGACCCTT CAACCCCC ATTCAAGTCC chr3R:9473547-9473667 95 3.00e-05 GACCACATCC CAACCCCC AAAAACTATC chr3L:4077028-4077148 96 3.00e-05 AGAGCGAGGA CAACCCCC TGCGGCACTG chr3R:16743312-16743432 69 3.83e-05 CGACTTGACG CCACCGCC ACTTGAGTGG chr2L:14463340-14463460 46 3.83e-05 AATTTGACAG CCACCGCC TCATCATCAT chr2R:22533120-22533240 111 5.18e-05 TTCAACTCCT CAACCACC CA chr3L:10861552-10861672 28 5.18e-05 GCCCATCAAG CAACCACC GTAAGGACTT chr3L:10862372-10862492 111 5.18e-05 AGATAACTGT CAACCACC GA chr2L:12005878-12005998 37 5.18e-05 CACCACCGTA CAACCACC GACCGCGTCA chr2L:2636299-2636419 19 7.04e-05 CATCAAACAG CCATCCCC ATTCCCCCCC chrX:20690632-20690752 45 7.04e-05 TGCGGTTACC CCAGCCCC TCGAGCGTAG chr2L:19480880-19481000 101 7.04e-05 ATTTAGCCGA CCAGCCCC GAGGGGAAAA chrX:20731655-20731775 18 7.04e-05 ATCCTGCACG CCATCCCC GCAAAGCCCA chr2L:7087694-7087814 53 7.04e-05 AGGCGGCGGC CCATCCCC TTTGTGGTTT chr3L:3708037-3708157 30 9.37e-05 CCCCTTTCCC CCATCACC AATCACCACC chr2R:18322911-18323031 93 9.37e-05 CTGTGGTTTT CCATCACC CATCTCGCCC chr3R:4903655-4903775 16 1.04e-04 TTAGCACGTG CAACCGCC GCCAGCAAGG chr2L:19482393-19482513 74 1.36e-04 CGTTGAAACT CGACCCCC TCTGGCCGTT chrX:20689717-20689837 80 1.54e-04 gGCAGCACTG CCAGCGCC ACAACCAAAA chr3L:12638521-12638641 12 1.54e-04 cacacactca cCATCGCC GGATGGAACA chr2L:14537205-14537325 64 1.93e-04 CGGGATCCCC CAAGCACC CCTCCACACA chr3L:5980669-5980789 86 1.93e-04 TGGAACACGA CGACCACC ACAGATCGTT chrX:20687335-20687455 89 1.93e-04 TCTGTTCGCC CAAGCACC AAAGGGCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14454474-14454594 8.6e-06 90_[+5]_22 chr3R:28572420-28572540 8.6e-06 64_[+5]_48 chr2R:22230078-22230198 8.6e-06 97_[+5]_15 chr3L:8024466-8024586 1.9e-05 49_[+5]_63 chr3L:19158441-19158561 1.9e-05 94_[+5]_18 chr2R:16211972-16212092 1.9e-05 25_[+5]_87 chr3R:22717663-22717783 1.9e-05 85_[+5]_27 chr2L:308324-308444 1.9e-05 53_[+5]_59 chr2L:4038025-4038145 3e-05 10_[+5]_102 chr2R:23883006-23883126 3e-05 59_[+5]_53 chr3R:9473547-9473667 3e-05 94_[+5]_18 chr3L:4077028-4077148 3e-05 95_[+5]_17 chr3R:16743312-16743432 3.8e-05 68_[+5]_44 chr2L:14463340-14463460 3.8e-05 45_[+5]_67 chr2R:22533120-22533240 5.2e-05 110_[+5]_2 chr3L:10861552-10861672 5.2e-05 27_[+5]_85 chr3L:10862372-10862492 5.2e-05 110_[+5]_2 chr2L:12005878-12005998 5.2e-05 36_[+5]_76 chr2L:2636299-2636419 7e-05 18_[+5]_94 chrX:20690632-20690752 7e-05 44_[+5]_68 chr2L:19480880-19481000 7e-05 100_[+5]_12 chrX:20731655-20731775 7e-05 17_[+5]_95 chr2L:7087694-7087814 7e-05 52_[+5]_60 chr3L:3708037-3708157 9.4e-05 29_[+5]_83 chr2R:18322911-18323031 9.4e-05 92_[+5]_20 chr3R:4903655-4903775 0.0001 15_[+5]_97 chr2L:19482393-19482513 0.00014 73_[+5]_39 chrX:20689717-20689837 0.00015 79_[+5]_33 chr3L:12638521-12638641 0.00015 11_[+5]_101 chr2L:14537205-14537325 0.00019 63_[+5]_49 chr3L:5980669-5980789 0.00019 85_[+5]_27 chrX:20687335-20687455 0.00019 88_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMACCMCC width=8 seqs=32 chr2L:14454474-14454594 ( 91) CCACCCCC 1 chr3R:28572420-28572540 ( 65) CCACCCCC 1 chr2R:22230078-22230198 ( 98) CCACCCCC 1 chr3L:8024466-8024586 ( 50) CCACCACC 1 chr3L:19158441-19158561 ( 95) CCACCACC 1 chr2R:16211972-16212092 ( 26) CCACCACC 1 chr3R:22717663-22717783 ( 86) CCACCACC 1 chr2L:308324-308444 ( 54) CCACCACC 1 chr2L:4038025-4038145 ( 11) CAACCCCC 1 chr2R:23883006-23883126 ( 60) CAACCCCC 1 chr3R:9473547-9473667 ( 95) CAACCCCC 1 chr3L:4077028-4077148 ( 96) CAACCCCC 1 chr3R:16743312-16743432 ( 69) CCACCGCC 1 chr2L:14463340-14463460 ( 46) CCACCGCC 1 chr2R:22533120-22533240 ( 111) CAACCACC 1 chr3L:10861552-10861672 ( 28) CAACCACC 1 chr3L:10862372-10862492 ( 111) CAACCACC 1 chr2L:12005878-12005998 ( 37) CAACCACC 1 chr2L:2636299-2636419 ( 19) CCATCCCC 1 chrX:20690632-20690752 ( 45) CCAGCCCC 1 chr2L:19480880-19481000 ( 101) CCAGCCCC 1 chrX:20731655-20731775 ( 18) CCATCCCC 1 chr2L:7087694-7087814 ( 53) CCATCCCC 1 chr3L:3708037-3708157 ( 30) CCATCACC 1 chr2R:18322911-18323031 ( 93) CCATCACC 1 chr3R:4903655-4903775 ( 16) CAACCGCC 1 chr2L:19482393-19482513 ( 74) CGACCCCC 1 chrX:20689717-20689837 ( 80) CCAGCGCC 1 chr3L:12638521-12638641 ( 12) CCATCGCC 1 chr2L:14537205-14537325 ( 64) CAAGCACC 1 chr3L:5980669-5980789 ( 86) CGACCACC 1 chrX:20687335-20687455 ( 89) CAAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 2.2e+001 -1164 215 -1164 -1164 28 140 -181 -1164 182 -1164 -1164 -1164 -1164 154 -49 -53 -1164 215 -1164 -1164 63 85 -49 -1164 -1164 215 -1164 -1164 -1164 215 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.2e+001 0.000000 1.000000 0.000000 0.000000 0.343750 0.593750 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.656250 0.156250 0.187500 0.000000 1.000000 0.000000 0.000000 0.437500 0.406250 0.156250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACCMCC MEME-5 regular expression -------------------------------------------------------------------------------- C[CA]ACC[AC]CC -------------------------------------------------------------------------------- Time 30.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9142974-9143094 1.98e-02 120 chr3R:12329956-12330076 1.01e-02 33_[+2(1.64e-05)]_79 chr3R:16800365-16800485 1.81e-01 72_[+1(2.35e-05)]_40 chr2R:6535200-6535320 5.24e-02 53_[+1(2.35e-05)]_59 chr2R:12538827-12538947 1.45e-01 120 chr3R:19803676-19803796 6.00e-02 61_[+1(3.88e-05)]_51 chr3R:23911452-23911572 4.38e-02 38_[+1(6.23e-05)]_74 chrX:20687335-20687455 6.62e-02 120 chr3R:25283292-25283412 2.75e-02 56_[+4(2.35e-05)]_[+4(5.26e-05)]_48 chr3R:9376961-9377081 4.85e-04 12_[+1(6.23e-05)]_66_[+2(9.60e-05)]_\ 26 chr3L:6336576-6336696 4.58e-02 120 chr3R:25549822-25549942 1.06e-02 61_[+2(3.78e-05)]_51 chr3L:473167-473287 1.21e-01 78_[+1(4.95e-05)]_34 chr2L:7087694-7087814 5.62e-04 52_[+5(7.04e-05)]_1_[+1(3.88e-05)]_\ 51 chr3R:22053288-22053408 1.56e-02 38_[+4(9.06e-05)]_74 chr3R:8160253-8160373 2.92e-02 65_[+4(7.16e-05)]_47 chr2L:14478957-14479077 1.52e-01 120 chr3R:19803875-19803995 5.60e-02 8_[+4(5.26e-05)]_[+4(5.26e-05)]_8_\ [+4(2.35e-05)]_80 chr2L:14374142-14374262 9.38e-02 120 chr3L:647659-647779 9.15e-01 120 chr3L:11407596-11407716 2.36e-01 104_[+3(8.45e-05)]_8 chr2R:19847596-19847716 3.12e-02 120 chr2L:7133626-7133746 1.10e-03 19_[+1(1.28e-05)]_93 chr2L:12348675-12348795 2.48e-01 62_[+2(3.78e-05)]_50 chr3R:15121976-15122096 2.87e-03 54_[+2(1.64e-05)]_49_[+4(5.26e-05)]_\ 1 chr2L:8715641-8715761 1.72e-03 72_[+4(5.26e-05)]_40 chr3L:17358574-17358694 6.14e-01 120 chr2R:5736830-5736950 6.89e-02 120 chr3R:12645042-12645162 1.25e-01 120 chr3L:5855487-5855607 5.59e-03 45_[+1(4.95e-05)]_67 chr2R:11274409-11274529 1.65e-03 41_[+3(2.15e-05)]_71 chr2L:6194170-6194290 5.98e-03 41_[+2(3.78e-05)]_59_[+4(5.26e-05)]_\ 4 chr3R:16329949-16330069 2.15e-02 120 chr3L:4206027-4206147 7.76e-02 23_[+2(3.78e-05)]_89 chr2L:5445616-5445736 3.21e-03 29_[+2(9.60e-05)]_75_[+3(2.15e-05)] chr2L:1071451-1071571 9.64e-04 2_[+1(6.23e-05)]_14_[+2(3.78e-05)]_\ 88 chr3L:12638521-12638641 8.05e-02 120 chr3R:26655697-26655817 1.44e-01 120 chrX:3043028-3043148 5.86e-02 120 chr3R:13231324-13231444 2.15e-01 120 chr2L:16711989-16712109 7.25e-02 120 chr2L:9620144-9620264 1.73e-03 17_[+1(8.16e-05)]_34_[+2(1.64e-05)]_\ 53 chr3L:21261754-21261874 1.72e-03 29_[+4(7.16e-05)]_26_[+2(7.96e-05)]_\ 49 chr3R:16356347-16356467 5.74e-01 120 chr3R:13912166-13912286 1.19e-01 63_[+2(9.60e-05)]_49 chr2R:16215934-16216054 1.74e-01 42_[+2(5.05e-05)]_70 chr3R:9144411-9144531 2.45e-01 48_[+2(7.96e-05)]_64 chr3R:26332217-26332337 1.40e-02 85_[+2(5.05e-05)]_27 chr3R:21501395-21501515 4.04e-01 38_[+2(7.96e-05)]_74 chr2R:16806915-16807035 1.04e-02 83_[+1(6.23e-05)]_29 chr3L:4077028-4077148 9.07e-05 7_[+3(2.15e-05)]_80_[+5(3.00e-05)]_\ 17 chr2R:23231461-23231581 1.12e-01 120 chr3L:19155715-19155835 7.40e-02 10_[+2(7.96e-05)]_102 chr2R:9149399-9149519 2.15e-01 60_[+2(5.05e-05)]_52 chr2R:18329753-18329873 4.41e-05 73_[+1(3.88e-05)]_25_[+3(6.55e-06)]_\ 6 chrX:19239535-19239655 1.07e-02 61_[+2(3.78e-05)]_51 chr3R:4985783-4985903 7.73e-02 13_[+1(1.28e-05)]_99 chrX:20689717-20689837 2.43e-04 6_[+3(2.15e-05)]_88_[+2(3.78e-05)]_\ 10 chr3L:19289486-19289606 2.02e-03 37_[+4(2.35e-05)]_75 chr3L:6050475-6050595 1.05e-03 5_[+1(4.95e-05)]_43_[+4(5.26e-05)]_\ 56 chr2R:19768834-19768954 5.29e-04 22_[+3(2.96e-05)]_6_[+4(2.35e-05)]_\ 76 chr2R:11189373-11189493 5.63e-02 43_[+2(7.96e-05)]_35_[+2(3.78e-05)]_\ 26 chr3L:6920374-6920494 4.15e-01 120 chr2L:19063263-19063383 3.15e-03 55_[+1(1.28e-05)]_57 chr3L:1708238-1708358 5.44e-02 120 chr3R:21869760-21869880 1.80e-01 120 chrX:19326131-19326251 3.60e-02 25_[+1(1.28e-05)]_87 chr2R:20889914-20890034 2.18e-01 120 chrX:20694152-20694272 1.12e-03 8_[+2(5.05e-05)]_104 chr3R:31884935-31885055 1.03e-01 15_[+4(9.06e-05)]_97 chr2R:18571137-18571257 1.63e-02 21_[+3(6.51e-05)]_91 chrX:20582987-20583107 4.78e-04 78_[+1(1.28e-05)]_[+2(1.64e-05)]_26 chr2R:9028253-9028373 3.99e-02 87_[+3(8.45e-05)]_25 chr3L:7938613-7938733 6.63e-02 98_[+3(6.51e-05)]_14 chr2L:14463340-14463460 2.99e-03 45_[+5(3.83e-05)]_26_[+1(7.27e-05)]_\ 33 chr3R:28673985-28674105 3.41e-01 120 chr2L:14540769-14540889 2.21e-02 51_[+1(6.23e-05)]_61 chr2L:12458788-12458908 5.88e-02 80_[+1(3.88e-05)]_32 chr2R:19837687-19837807 1.02e-01 120 chr3L:17365236-17365356 1.54e-01 120 chr2L:19235818-19235938 5.48e-03 53_[+3(2.15e-05)]_59 chr3L:424689-424809 5.33e-03 120 chr2L:8853939-8854059 1.19e-01 120 chr3L:14640917-14641037 1.87e-02 120 chr2R:15717726-15717846 5.87e-03 42_[+4(2.35e-05)]_70 chr2R:22906974-22907094 1.67e-01 57_[+1(6.23e-05)]_55 chr3L:10773742-10773862 8.54e-02 109_[+1(8.16e-05)]_3 chr2R:22230078-22230198 1.58e-03 58_[+4(9.06e-05)]_31_[+5(8.55e-06)]_\ 15 chr3R:28899136-28899256 3.68e-02 53_[+1(6.23e-05)]_59 chr2L:19846604-19846724 5.15e-03 34_[+1(3.88e-05)]_28_[+3(3.81e-05)]_\ 42 chr2R:12392762-12392882 1.44e-01 120 chr2R:12439909-12440029 4.28e-02 120 chr3L:6498219-6498339 1.91e-02 23_[+4(5.26e-05)]_11_[+4(5.26e-05)]_\ 70 chr3R:7333263-7333383 1.32e-03 87_[+1(2.35e-05)]_25 chrX:18547954-18548074 1.90e-02 120 chr3L:14223499-14223619 8.71e-01 120 chr3L:14114133-14114253 4.51e-03 120 chr3R:29512858-29512978 1.39e-01 120 chr3L:3080170-3080290 4.82e-03 75_[+1(1.28e-05)]_37 chr3R:10648576-10648696 2.84e-02 120 chrX:20643600-20643720 6.51e-02 120 chr2R:20633697-20633817 1.27e-02 84_[+4(7.16e-05)]_28 chr3R:30449556-30449676 7.27e-03 120 chr2R:6964601-6964721 5.79e-03 37_[+1(3.88e-05)]_25_[+4(9.06e-05)]_\ 42 chr2L:19482393-19482513 6.81e-03 15_[+2(9.60e-05)]_97 chr2R:22615829-22615949 5.20e-01 120 chr2L:12005878-12005998 3.80e-06 36_[+5(5.18e-05)]_40_[+1(1.28e-05)]_\ 28 chr2L:11961352-11961472 2.64e-02 39_[+1(1.28e-05)]_73 chr2R:16813895-16814015 4.59e-04 91_[+2(1.64e-05)]_21 chr2L:16791537-16791657 1.19e-02 54_[+1(1.28e-05)]_58 chr3R:4903655-4903775 7.34e-04 56_[+3(3.81e-05)]_56 chr2R:19230719-19230839 1.36e-01 120 chr3L:14570391-14570511 1.10e-03 45_[+3(2.15e-05)]_43_[+1(1.28e-05)]_\ 16 chr3R:16743312-16743432 1.77e-04 12_[+1(1.28e-05)]_48_[+5(3.83e-05)]_\ 44 chr3L:22390426-22390546 6.27e-02 120 chrX:7666759-7666879 2.37e-01 120 chr3R:13909155-13909275 2.19e-01 120 chr3L:8750246-8750366 2.57e-01 120 chr3R:13018386-13018506 6.11e-01 120 chr2R:18311106-18311226 3.56e-02 43_[+1(3.88e-05)]_69 chr3R:21586132-21586252 6.56e-02 88_[+4(7.16e-05)]_24 chr3R:30531475-30531595 5.89e-01 120 chr2R:15816346-15816466 5.26e-03 9_[+1(1.28e-05)]_103 chr2R:18322911-18323031 5.28e-03 51_[+5(9.37e-05)]_33_[+5(9.37e-05)]_\ 20 chr3L:958780-958900 9.20e-02 65_[+2(5.05e-05)]_47 chr2R:22197553-22197673 3.02e-02 76_[+1(7.27e-05)]_36 chr3L:16489462-16489582 7.10e-01 120 chrX:17409989-17410109 1.05e-01 35_[+2(5.05e-05)]_77 chr2L:14537981-14538101 1.22e-01 120 chr2L:8884361-8884481 2.10e-01 120 chr3R:14069723-14069843 2.29e-01 120 chr2L:10615191-10615311 3.88e-02 37_[+1(4.95e-05)]_75 chr2R:9551724-9551844 2.79e-02 44_[+1(1.28e-05)]_68 chr2L:14267392-14267512 1.07e-01 32_[+2(7.96e-05)]_80 chr3L:13071294-13071414 9.11e-03 65_[+2(3.78e-05)]_47 chr2L:6411307-6411427 7.45e-03 80_[+1(1.28e-05)]_32 chr2R:18229419-18229539 2.28e-01 120 chr2L:13906001-13906121 1.83e-01 120 chr2L:16389302-16389422 2.35e-04 76_[+3(2.96e-05)]_36 chr3R:29075651-29075771 6.63e-03 9_[+2(9.60e-05)]_27_[+1(6.23e-05)]_\ 68 chr3R:13930414-13930534 3.36e-02 85_[+1(4.95e-05)]_27 chr3L:10862372-10862492 2.34e-02 30_[+2(5.05e-05)]_45_[+2(9.60e-05)]_\ 19_[+5(5.18e-05)]_2 chr3R:15873093-15873213 1.26e-01 120 chr3R:23741205-23741325 1.59e-03 34_[+1(6.23e-05)]_70_[+3(9.50e-05)] chr3L:5980669-5980789 2.25e-04 4_[+4(5.26e-05)]_35_[+2(3.78e-05)]_\ 65 chr2R:25120903-25121023 8.63e-02 120 chr2R:16800575-16800695 1.98e-03 103_[+2(1.64e-05)]_9 chr3L:8851867-8851987 2.72e-01 120 chr2L:6155688-6155808 7.68e-02 120 chr2R:14858607-14858727 1.99e-02 66_[+1(1.28e-05)]_46 chr3R:9891789-9891909 8.42e-03 34_[+4(5.26e-05)]_9_[+1(3.88e-05)]_\ 61 chr2R:13438987-13439107 4.00e-02 40_[+1(3.88e-05)]_72 chrX:20724330-20724450 8.84e-01 120 chr3L:10861552-10861672 1.45e-01 27_[+5(5.18e-05)]_85 chrX:20729165-20729285 1.64e-03 120 chr2L:19784083-19784203 6.04e-01 120 chr2L:20322213-20322333 8.10e-01 120 chrX:20731655-20731775 6.15e-02 17_[+5(7.04e-05)]_95 chr2L:2133090-2133210 8.84e-02 13_[+2(1.64e-05)]_99 chr3R:9473547-9473667 4.73e-02 94_[+5(3.00e-05)]_18 chr2L:14539557-14539677 1.63e-01 120 chr3R:29552946-29553066 3.78e-03 40_[+2(7.96e-05)]_56_[+3(4.66e-05)]_\ 8 chr3R:10559212-10559332 2.60e-03 120 chr2L:18621400-18621520 1.34e-01 52_[+2(1.64e-05)]_60 chr2L:14490111-14490231 9.98e-02 120 chr2L:14537205-14537325 4.41e-02 120 chr3R:23130284-23130404 5.19e-01 120 chr3L:1931427-1931547 7.80e-03 100_[+3(8.45e-05)]_12 chr2L:19480880-19481000 3.54e-02 100_[+5(7.04e-05)]_12 chr2R:16209581-16209701 1.40e-02 55_[+1(8.16e-05)]_16_[+4(9.06e-05)]_\ 33 chr2R:13563709-13563829 3.59e-03 58_[+1(1.28e-05)]_54 chr3R:9530083-9530203 9.14e-01 120 chr3L:18237997-18238117 2.36e-02 64_[+4(2.35e-05)]_48 chr3R:19499833-19499953 5.24e-03 35_[+2(3.78e-05)]_77 chr3L:12085463-12085583 8.81e-01 120 chr3L:17895979-17896099 2.21e-02 52_[+2(1.64e-05)]_60 chr4:495806-495926 9.57e-01 120 chr2R:6560206-6560326 1.77e-02 109_[+2(1.64e-05)]_3 chr2R:23883006-23883126 1.80e-02 59_[+5(3.00e-05)]_53 chr3R:28572420-28572540 4.64e-02 64_[+5(8.55e-06)]_48 chr2L:308324-308444 1.83e-02 53_[+5(1.93e-05)]_59 chr3R:9352469-9352589 2.06e-01 120 chr3R:22717663-22717783 4.84e-02 85_[+5(1.93e-05)]_27 chr3L:7811009-7811129 8.41e-01 120 chr2L:14454474-14454594 1.62e-02 90_[+5(8.55e-06)]_22 chr2R:12008918-12009038 7.41e-04 63_[+2(3.78e-05)]_36_[+3(2.96e-05)]_\ 5 chr3L:3624979-3625099 6.59e-02 120 chr2R:10598219-10598339 6.76e-03 37_[+1(3.88e-05)]_75 chr2R:22533120-22533240 9.44e-05 8_[+3(8.45e-05)]_94_[+5(5.18e-05)]_\ 2 chr2L:14449952-14450072 4.71e-01 120 chr3L:4720739-4720859 2.12e-01 120 chr3R:18585385-18585505 6.12e-02 14_[+2(1.64e-05)]_98 chr2L:14422328-14422448 2.18e-01 120 chr2L:14403753-14403873 5.66e-02 65_[+4(2.35e-05)]_47 chr2L:11296457-11296577 1.99e-03 104_[+3(2.15e-05)]_8 chr3L:15741020-15741140 3.88e-01 120 chr3R:5125820-5125940 5.11e-01 120 chr2R:13621392-13621512 3.29e-02 25_[+2(1.64e-05)]_87 chr3R:22449987-22450107 8.28e-01 120 chr2R:7773873-7773993 1.62e-03 36_[+2(1.64e-05)]_61_[+4(2.35e-05)]_\ 7 chr2R:18604004-18604124 3.26e-01 120 chr3R:12717701-12717821 2.16e-02 120 chr2R:11638299-11638419 1.11e-01 120 chr2L:7216382-7216502 2.00e-01 37_[+2(3.78e-05)]_75 chr2R:18564349-18564469 8.23e-01 120 chr2L:307276-307396 4.30e-03 23_[+3(2.15e-05)]_89 chr3R:9142101-9142221 4.80e-04 44_[+2(5.05e-05)]_52_[+3(2.96e-05)]_\ 8 chr2L:7577790-7577910 2.49e-03 103_[+2(1.64e-05)]_9 chr3R:23877969-23878089 6.28e-02 120 chrX:20690632-20690752 2.89e-04 33_[+1(4.95e-05)]_3_[+5(7.04e-05)]_\ 52_[+3(2.15e-05)]_8 chr3L:10811251-10811371 5.23e-02 120 chr3L:3708037-3708157 1.72e-02 29_[+5(9.37e-05)]_83 chrX:5885024-5885144 3.56e-01 120 chr3R:8225669-8225789 1.56e-01 120 chr3R:10699058-10699178 8.50e-03 49_[+1(1.28e-05)]_63 chr2R:17716652-17716772 4.70e-02 83_[+1(1.28e-05)]_29 chr3L:15598109-15598229 2.98e-01 120 chr3R:28573419-28573539 2.22e-01 120 chr2R:18375318-18375438 3.72e-02 120 chr2R:10734254-10734374 1.44e-03 48_[+2(9.60e-05)]_64 chr2R:21475037-21475157 3.22e-01 120 chr2L:8588026-8588146 1.73e-02 48_[+1(1.28e-05)]_64 chr2R:16211972-16212092 3.30e-04 25_[+5(1.93e-05)]_5_[+4(7.16e-05)]_\ 74 chr2R:7071169-7071289 2.47e-03 77_[+1(1.28e-05)]_35 chr3R:18783427-18783547 6.30e-02 110_[+2(7.96e-05)]_2 chr3R:24798806-24798926 8.44e-01 120 chr2L:3619106-3619226 3.13e-02 51_[+2(3.78e-05)]_61 chr2L:5095578-5095698 5.01e-03 76_[+1(2.35e-05)]_36 chr2L:12589052-12589172 5.95e-02 120 chr3L:12057589-12057709 1.17e-01 61_[+2(9.60e-05)]_51 chr3R:21343267-21343387 8.81e-01 120 chr3R:23538744-23538864 3.91e-02 51_[+2(1.64e-05)]_61 chr3R:4984803-4984923 8.78e-01 120 chr2R:20914048-20914168 1.17e-03 16_[+1(4.95e-05)]_96 chr3L:19158441-19158561 2.23e-03 35_[+5(7.04e-05)]_42_[+5(1.93e-05)]_\ 1_[+5(1.93e-05)]_18 chr2R:7417272-7417392 3.99e-02 120 chr3R:5096357-5096477 9.72e-01 120 chr2R:11496542-11496662 2.83e-01 120 chr2L:4038025-4038145 5.80e-03 10_[+5(3.00e-05)]_102 chrX:18505277-18505397 6.66e-02 52_[+2(3.78e-05)]_60 chr3L:10857258-10857378 1.15e-01 91_[+2(3.78e-05)]_21 chr2R:8603511-8603631 3.69e-01 120 chr3L:7370458-7370578 2.64e-03 69_[+1(1.28e-05)]_43 chr3R:26031888-26032008 5.28e-02 44_[+2(3.78e-05)]_68 chr3L:8024466-8024586 6.46e-02 36_[+5(7.04e-05)]_5_[+5(1.93e-05)]_\ 63 chr3L:510996-511116 4.97e-01 120 chr2L:2636299-2636419 2.63e-04 18_[+5(7.04e-05)]_14_[+2(5.05e-05)]_\ 72 chr3R:10154404-10154524 7.58e-01 120 chr3R:24582410-24582530 4.15e-05 70_[+1(3.88e-05)]_42 chr3L:6975875-6975995 7.61e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************