******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/rgr.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23908285-23908405 1.0000 120 chr3R:12424136-12424256 1.0000 120 chrX:4551897-4552017 1.0000 120 chr3L:5565177-5565297 1.0000 120 chr3L:20778769-20778889 1.0000 120 chr2R:18819422-18819542 1.0000 120 chr3L:11083782-11083902 1.0000 120 chr3L:1639161-1639281 1.0000 120 chr2L:8004108-8004228 1.0000 120 chr2R:20327538-20327658 1.0000 120 chr3L:10878958-10879078 1.0000 120 chr3R:4654664-4654784 1.0000 120 chr3R:11761856-11761976 1.0000 120 chr2R:16720087-16720207 1.0000 120 chr2R:18126363-18126483 1.0000 120 chr2R:24616149-24616269 1.0000 120 chrX:10728187-10728307 1.0000 120 chr2R:6632326-6632446 1.0000 120 chr3L:7243969-7244089 1.0000 120 chr2L:13082325-13082445 1.0000 120 chr3R:17595219-17595339 1.0000 120 chrX:13840170-13840290 1.0000 120 chr2R:9915202-9915322 1.0000 120 chrX:1595871-1595991 1.0000 120 chr2R:23522590-23522710 1.0000 120 chr3L:7792365-7792485 1.0000 120 chr3R:25058735-25058855 1.0000 120 chr2R:18168295-18168415 1.0000 120 chr3L:15150179-15150299 1.0000 120 chr2R:8122878-8122998 1.0000 120 chr2L:7954719-7954839 1.0000 120 chr2L:10972389-10972509 1.0000 120 chr3L:3246916-3247036 1.0000 120 chrX:2196218-2196338 1.0000 120 chr3R:9240184-9240304 1.0000 120 chr2R:8607234-8607354 1.0000 120 chr3R:20765835-20765955 1.0000 120 chr2R:18178700-18178820 1.0000 120 chr2L:423312-423432 1.0000 120 chr3R:29076159-29076279 1.0000 120 chr2R:6144355-6144475 1.0000 120 chr3R:21260932-21261052 1.0000 120 chr2R:6147664-6147784 1.0000 120 chr2R:6969443-6969563 1.0000 120 chr2L:1668843-1668963 1.0000 120 chr3L:16159503-16159623 1.0000 120 chr3R:19603141-19603261 1.0000 120 chr3R:13372083-13372203 1.0000 120 chr2R:14161347-14161467 1.0000 120 chr2R:11096429-11096549 1.0000 120 chr2L:5904698-5904818 1.0000 120 chr3R:16154388-16154508 1.0000 120 chr3R:15896002-15896122 1.0000 120 chr3R:8142235-8142355 1.0000 120 chr3R:31878420-31878540 1.0000 120 chr2R:6517808-6517928 1.0000 120 chr3R:18742464-18742584 1.0000 120 chr2L:14599475-14599595 1.0000 120 chr3L:14564562-14564682 1.0000 120 chr3R:17404290-17404410 1.0000 120 chr3R:27092374-27092494 1.0000 120 chrX:11550183-11550303 1.0000 120 chr3R:30281398-30281518 1.0000 120 chr2L:856125-856245 1.0000 120 chr3L:21972464-21972584 1.0000 120 chr3L:15977718-15977838 1.0000 120 chr3R:5100476-5100596 1.0000 120 chr3L:12616506-12616626 1.0000 120 chr2L:17782065-17782185 1.0000 120 chrX:4548801-4548921 1.0000 120 chr3R:17053496-17053616 1.0000 120 chr3R:24039325-24039445 1.0000 120 chr2L:8859985-8860105 1.0000 120 chr3L:5183303-5183423 1.0000 120 chr3L:18143104-18143224 1.0000 120 chr3R:29283365-29283485 1.0000 120 chr2L:19364737-19364857 1.0000 120 chrX:14810644-14810764 1.0000 120 chr3R:30811319-30811439 1.0000 120 chr2R:22525182-22525302 1.0000 120 chr3R:31439299-31439419 1.0000 120 chr3R:31956423-31956543 1.0000 120 chr3R:22635896-22636016 1.0000 120 chr3L:3240427-3240547 1.0000 120 chr2R:19395978-19396098 1.0000 120 chr3R:25634002-25634122 1.0000 120 chr3L:3903407-3903527 1.0000 120 chr2L:19490216-19490336 1.0000 120 chr2L:13882071-13882191 1.0000 120 chr3R:23888790-23888910 1.0000 120 chrX:14802734-14802854 1.0000 120 chr3L:1336420-1336540 1.0000 120 chrX:8469164-8469284 1.0000 120 chr2R:14109817-14109937 1.0000 120 chr2R:6693194-6693314 1.0000 120 chrX:3390045-3390165 1.0000 120 chr3L:728056-728176 1.0000 120 chr3R:22628083-22628203 1.0000 120 chr3L:14055521-14055641 1.0000 120 chr2R:24629565-24629685 1.0000 120 chr2L:8672399-8672519 1.0000 120 chr3L:21108644-21108764 1.0000 120 chr3R:29866807-29866927 1.0000 120 chr2R:8952307-8952427 1.0000 120 chr3R:8154107-8154227 1.0000 120 chr2R:22529904-22530024 1.0000 120 chr2L:2221081-2221201 1.0000 120 chrX:17490009-17490129 1.0000 120 chr3R:30280437-30280557 1.0000 120 chr2L:5003169-5003289 1.0000 120 chrX:5786642-5786762 1.0000 120 chr3L:7783504-7783624 1.0000 120 chr2L:9438373-9438493 1.0000 120 chr2L:651000-651120 1.0000 120 chr3L:4357844-4357964 1.0000 120 chr3L:20549495-20549615 1.0000 120 chr2L:11395784-11395904 1.0000 120 chrX:12596736-12596856 1.0000 120 chr2R:9839603-9839723 1.0000 120 chr2R:19849265-19849385 1.0000 120 chr3L:1087490-1087610 1.0000 120 chr2L:11328484-11328604 1.0000 120 chr3L:8157120-8157240 1.0000 120 chr3R:8893087-8893207 1.0000 120 chr3R:13841052-13841172 1.0000 120 chr3R:31225168-31225288 1.0000 120 chr2L:17750266-17750386 1.0000 120 chr3L:1388239-1388359 1.0000 120 chrX:263786-263906 1.0000 120 chr3L:19504874-19504994 1.0000 120 chr3L:15637779-15637899 1.0000 120 chr3L:17506120-17506240 1.0000 120 chr2L:11222199-11222319 1.0000 120 chr3R:19283686-19283806 1.0000 120 chrX:3411964-3412084 1.0000 120 chr2R:8603087-8603207 1.0000 120 chrX:4610572-4610692 1.0000 120 chr3R:12443291-12443411 1.0000 120 chrX:13570390-13570510 1.0000 120 chr3L:664004-664124 1.0000 120 chr3L:16796756-16796876 1.0000 120 chr3L:12270032-12270152 1.0000 120 chr2L:18678394-18678514 1.0000 120 chr3L:5633713-5633833 1.0000 120 chr2L:6461672-6461792 1.0000 120 chr2R:19913820-19913940 1.0000 120 chr4:132057-132177 1.0000 120 chr2L:20675994-20676114 1.0000 120 chrX:16103649-16103769 1.0000 120 chr3R:10579696-10579816 1.0000 120 chr2L:5242630-5242750 1.0000 120 chrX:13254659-13254779 1.0000 120 chrX:768048-768168 1.0000 120 chr3L:18672391-18672511 1.0000 120 chr2R:22666763-22666883 1.0000 120 chr2L:5972137-5972257 1.0000 120 chr2R:6994771-6994891 1.0000 120 chr3L:13994484-13994604 1.0000 120 chr3R:29096068-29096188 1.0000 120 chr2L:3880243-3880363 1.0000 120 chr3R:6397872-6397992 1.0000 120 chr2R:18256940-18257060 1.0000 120 chr2L:382902-383022 1.0000 120 chrX:8244421-8244541 1.0000 120 chr3R:18481138-18481258 1.0000 120 chr3L:12016311-12016431 1.0000 120 chr2L:5547259-5547379 1.0000 120 chrX:2648088-2648208 1.0000 120 chr3R:8858111-8858231 1.0000 120 chrX:6624486-6624606 1.0000 120 chr2L:15743709-15743829 1.0000 120 chrX:6791671-6791791 1.0000 120 chr3R:27171282-27171402 1.0000 120 chr2R:8600398-8600518 1.0000 120 chr3L:2835078-2835198 1.0000 120 chr2R:15513528-15513648 1.0000 120 chr3R:4403827-4403947 1.0000 120 chrX:10718068-10718188 1.0000 120 chr2R:21663199-21663319 1.0000 120 chr3L:8702663-8702783 1.0000 120 chr3L:10711463-10711583 1.0000 120 chr3R:5331924-5332044 1.0000 120 chr3R:14918395-14918515 1.0000 120 chrX:9352830-9352950 1.0000 120 chr3L:907827-907947 1.0000 120 chrX:3346690-3346810 1.0000 120 chr3L:17502334-17502454 1.0000 120 chrX:5025431-5025551 1.0000 120 chr2L:12823696-12823816 1.0000 120 chrX:18094887-18095007 1.0000 120 chr2L:5493113-5493233 1.0000 120 chr3L:8656796-8656916 1.0000 120 chr2R:19969838-19969958 1.0000 120 chr3L:660454-660574 1.0000 120 chr3L:511970-512090 1.0000 120 chrX:5923243-5923363 1.0000 120 chr3L:761845-761965 1.0000 120 chr3R:6395660-6395780 1.0000 120 chr2R:6556975-6557095 1.0000 120 chr3R:9768433-9768553 1.0000 120 chr3L:12410928-12411048 1.0000 120 chr3R:13849454-13849574 1.0000 120 chrX:8233332-8233452 1.0000 120 chr3R:22175813-22175933 1.0000 120 chr2L:11306248-11306368 1.0000 120 chr3R:14048845-14048965 1.0000 120 chrX:19164866-19164986 1.0000 120 chrX:2452880-2453000 1.0000 120 chrX:13679710-13679830 1.0000 120 chr2L:11044827-11044947 1.0000 120 chrX:3381129-3381249 1.0000 120 chr3R:29256905-29257025 1.0000 120 chr3R:6950224-6950344 1.0000 120 chr2L:20915453-20915573 1.0000 120 chr2R:9098460-9098580 1.0000 120 chr3R:4873879-4873999 1.0000 120 chr2L:1362358-1362478 1.0000 120 chr3L:13021827-13021947 1.0000 120 chr3L:14083485-14083605 1.0000 120 chr3R:14765471-14765591 1.0000 120 chr2L:5501467-5501587 1.0000 120 chrX:8141493-8141613 1.0000 120 chrX:3695159-3695279 1.0000 120 chr2L:20700704-20700824 1.0000 120 chr2R:13476893-13477013 1.0000 120 chr2R:23668868-23668988 1.0000 120 chr3R:24298545-24298665 1.0000 120 chr2R:14247577-14247697 1.0000 120 chrX:2518470-2518590 1.0000 120 chr3L:3343454-3343574 1.0000 120 chr3R:8029773-8029893 1.0000 120 chr3R:31744170-31744290 1.0000 120 chr2L:8229759-8229879 1.0000 120 chr2L:7320078-7320198 1.0000 120 chr3L:16800178-16800298 1.0000 120 chr3R:14361762-14361882 1.0000 120 chr3R:10661239-10661359 1.0000 120 chrX:3408309-3408429 1.0000 120 chrX:4391520-4391640 1.0000 120 chr2L:19201989-19202109 1.0000 120 chr2L:530367-530487 1.0000 120 chr2R:18209839-18209959 1.0000 120 chrX:5026191-5026311 1.0000 120 chr3R:19858438-19858558 1.0000 120 chr3R:23508461-23508581 1.0000 120 chr2L:5249889-5250009 1.0000 120 chr2R:18811980-18812100 1.0000 120 chr3R:26508006-26508126 1.0000 120 chr3L:20649077-20649197 1.0000 120 chr2L:10615950-10616070 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_rgr/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/rgr.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.327 C 0.174 G 0.174 T 0.325 Background letter frequencies (from file dataset with add-one prior applied): A 0.327 C 0.174 G 0.174 T 0.325 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF STGSCAGC MEME-1 width = 8 sites = 16 llr = 160 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::7:: pos.-specific C 4::593:8 probability G 6:a51:a3 matrix T :a:::::: bits 2.5 * * 2.3 * * 2.0 * * * 1.8 * * ** Relative 1.5 ***** ** Entropy 1.3 ***** ** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGCCAGC consensus C G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:728056-728176 101 5.90e-06 TTCTGCTAGT GTGGCAGC CAACCCTTTT chr2L:8004108-8004228 38 5.90e-06 TCCCAGCCGG GTGGCAGC TCATCCTCGC chr3R:14361762-14361882 1 9.04e-06 . GTGCCCGC AAGCCAATTG chr3L:15637779-15637899 108 9.04e-06 GCGCGGCATG GTGGCCGC CTGTA chr2R:6632326-6632446 54 9.04e-06 CGAATTGCGA GTGGCCGC TCACGGAATA chr2R:18811980-18812100 27 1.49e-05 CTATAAAGAA CTGGCAGC AAAACATTAA chr3R:24298545-24298665 60 1.49e-05 ACGCAGCGTA CTGCCAGC AACAACAAAT chr2L:1362358-1362478 68 1.49e-05 CTTCGCACTT CTGCCAGC GCCATCTGTT chr3L:18672391-18672511 90 1.49e-05 CGCGAAAAAT CTGCCAGC CCCGAGAACT chr2R:24616149-24616269 36 1.49e-05 AATTTCCCGC CTGCCAGC GCGTCACCTG chr3L:14083485-14083605 16 2.40e-05 TTTAAGAAAA GTGGCAGG CATTTATATA chr3R:9768433-9768553 55 2.40e-05 AGTGTTTTGT GTGCCAGG ATCAGTGTTG chrX:263786-263906 79 3.30e-05 TACACACAGT CTGCCAGG CCCAGGCCTG chr3R:31878420-31878540 9 3.61e-05 CCCTTGGT CTGGCCGG ATTTTTACAC chr2L:5547259-5547379 88 4.20e-05 AAAAGCAGCA GTGCGAGC AAAAATCAAG chrX:8244421-8244541 40 4.52e-05 CGCCATCGTT GTGGGCGC CAAAAAGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:728056-728176 5.9e-06 100_[+1]_12 chr2L:8004108-8004228 5.9e-06 37_[+1]_75 chr3R:14361762-14361882 9e-06 [+1]_112 chr3L:15637779-15637899 9e-06 107_[+1]_5 chr2R:6632326-6632446 9e-06 53_[+1]_59 chr2R:18811980-18812100 1.5e-05 26_[+1]_86 chr3R:24298545-24298665 1.5e-05 59_[+1]_53 chr2L:1362358-1362478 1.5e-05 67_[+1]_45 chr3L:18672391-18672511 1.5e-05 89_[+1]_23 chr2R:24616149-24616269 1.5e-05 35_[+1]_77 chr3L:14083485-14083605 2.4e-05 15_[+1]_97 chr3R:9768433-9768553 2.4e-05 54_[+1]_58 chrX:263786-263906 3.3e-05 78_[+1]_34 chr3R:31878420-31878540 3.6e-05 8_[+1]_104 chr2L:5547259-5547379 4.2e-05 87_[+1]_25 chrX:8244421-8244541 4.5e-05 39_[+1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGSCAGC width=8 seqs=16 chr3L:728056-728176 ( 101) GTGGCAGC 1 chr2L:8004108-8004228 ( 38) GTGGCAGC 1 chr3R:14361762-14361882 ( 1) GTGCCCGC 1 chr3L:15637779-15637899 ( 108) GTGGCCGC 1 chr2R:6632326-6632446 ( 54) GTGGCCGC 1 chr2R:18811980-18812100 ( 27) CTGGCAGC 1 chr3R:24298545-24298665 ( 60) CTGCCAGC 1 chr2L:1362358-1362478 ( 68) CTGCCAGC 1 chr3L:18672391-18672511 ( 90) CTGCCAGC 1 chr2R:24616149-24616269 ( 36) CTGCCAGC 1 chr3L:14083485-14083605 ( 16) GTGGCAGG 1 chr3R:9768433-9768553 ( 55) GTGCCAGG 1 chrX:263786-263906 ( 79) CTGCCAGG 1 chr3R:31878420-31878540 ( 9) CTGGCCGG 1 chr2L:5547259-5547379 ( 88) GTGCGAGC 1 chrX:8244421-8244541 ( 40) GTGGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 3.0e+002 -1064 133 169 -1064 -1064 -1064 -1064 162 -1064 -1064 252 -1064 -1064 152 152 -1064 -1064 233 -47 -1064 107 84 -1064 -1064 -1064 -1064 252 -1064 -1064 211 52 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.0e+002 0.000000 0.437500 0.562500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.875000 0.125000 0.000000 0.687500 0.312500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSCAGC MEME-1 regular expression -------------------------------------------------------------------------------- [GC]TG[CG]C[AC]G[CG] -------------------------------------------------------------------------------- Time 9.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGCAA MEME-2 width = 8 sites = 11 llr = 115 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::3aa pos.-specific C :a2237:: probability G a:887::: matrix T :::::::: bits 2.5 ** 2.3 ** 2.0 ** 1.8 ***** Relative 1.5 ******** Entropy 1.3 ******** (15.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGGCAA consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1336420-1336540 23 2.97e-06 ACATACAGTA GCGGGCAA ATAATCAGCA chr2R:24616149-24616269 85 2.97e-06 GTAAATAAGG GCGGGCAA TTGTTTACTC chr3L:10878958-10879078 76 2.97e-06 CAGCGGGACA GCGGGCAA ATGCTTTGGG chr3R:4403827-4403947 90 5.94e-06 AATAGTTTTA GCGGCCAA TTCATACTTC chr3R:25058735-25058855 27 5.94e-06 GAACCCTAGA GCGGCCAA TTGAAGGGAG chrX:13254659-13254779 105 1.19e-05 AAAACAAAAG GCGCGCAA TAAACGAG chr3R:6950224-6950344 29 1.74e-05 TGGAATGATT GCGGGAAA GCATTCCAAT chr4:132057-132177 25 1.74e-05 GATCACCGCA GCGGGAAA TAAAATACAC chr3L:1639161-1639281 113 1.74e-05 TCTCTTCCGA GCGGGAAA chr2L:13082325-13082445 79 2.34e-05 TGCAAACAAA GCCGCCAA AGCATATGGA chrX:4551897-4552017 75 3.19e-05 ATTTAAGGGA GCCCGCAA CAAGGTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1336420-1336540 3e-06 22_[+2]_90 chr2R:24616149-24616269 3e-06 84_[+2]_28 chr3L:10878958-10879078 3e-06 75_[+2]_37 chr3R:4403827-4403947 5.9e-06 89_[+2]_23 chr3R:25058735-25058855 5.9e-06 26_[+2]_86 chrX:13254659-13254779 1.2e-05 104_[+2]_8 chr3R:6950224-6950344 1.7e-05 28_[+2]_84 chr4:132057-132177 1.7e-05 24_[+2]_88 chr3L:1639161-1639281 1.7e-05 112_[+2] chr2L:13082325-13082445 2.3e-05 78_[+2]_34 chrX:4551897-4552017 3.2e-05 74_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGCAA width=8 seqs=11 chr3L:1336420-1336540 ( 23) GCGGGCAA 1 chr2R:24616149-24616269 ( 85) GCGGGCAA 1 chr3L:10878958-10879078 ( 76) GCGGGCAA 1 chr3R:4403827-4403947 ( 90) GCGGCCAA 1 chr3R:25058735-25058855 ( 27) GCGGCCAA 1 chrX:13254659-13254779 ( 105) GCGCGCAA 1 chr3R:6950224-6950344 ( 29) GCGGGAAA 1 chr4:132057-132177 ( 25) GCGGGAAA 1 chr3L:1639161-1639281 ( 113) GCGGGAAA 1 chr2L:13082325-13082445 ( 79) GCCGCCAA 1 chrX:4551897-4552017 ( 75) GCCCGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.1e+004 -1010 -1010 252 -1010 -1010 252 -1010 -1010 -1010 6 223 -1010 -1010 6 223 -1010 -1010 65 206 -1010 -26 206 -1010 -1010 161 -1010 -1010 -1010 161 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.272727 0.727273 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCAA MEME-2 regular expression -------------------------------------------------------------------------------- GCGG[GC][CA]AA -------------------------------------------------------------------------------- Time 15.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GSTGSBGT MEME-3 width = 8 sites = 18 llr = 173 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :6::43:3 probability G a4:a63a: matrix T ::a::4:7 bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 ***** * Entropy 1.3 ***** * (13.9 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTGGTGT consensus G CC C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8122878-8122998 63 2.93e-06 ATTTTGTGCT GCTGGCGT CTCGCTGTTG chr3R:31744170-31744290 35 1.17e-05 CCTAGTTGCT GGTGGCGT TCGCCTCACT chrX:1595871-1595991 90 1.17e-05 GCCTTCTACC GCTGCCGT TCCGTACCGC chrX:2648088-2648208 105 2.46e-05 TAGTGTGACC GCTGGTGT TTGTGGTG chr2R:19913820-19913940 5 2.46e-05 TTTT GGTGGGGT TCATGTAGGG chr2R:8607234-8607354 107 2.46e-05 AAATTAGCCT GGTGGGGT ATATCA chr2R:20327538-20327658 20 2.46e-05 ATATATTGGT GCTGGTGT GAGTGTATGT chr3R:12424136-12424256 86 2.46e-05 CTATAAAAGC GCTGGTGT TCAAATGTGT chrX:2452880-2453000 100 2.91e-05 TTCAGCTAAA GGTGCCGT CATCATCATG chr3R:21260932-21261052 21 2.91e-05 GAGGATTTGG GCTGGGGC TGTGTTTAAT chr2L:8004108-8004228 3 2.91e-05 AC GGTGCCGT CATCGGTGGC chr2R:22525182-22525302 28 3.23e-05 GGTGGGATGA GGTGGCGC AAATGGGAGG chr2R:8952307-8952427 23 4.62e-05 CACTACTGCA GGTGCGGT CACACTGTTT chr3R:16154388-16154508 22 4.62e-05 AAACGAACTT GCTGCTGT TCTTTTTGCT chr2R:9915202-9915322 64 4.62e-05 GCCTTTTCGC GCTGCTGT ATAAAGTGCA chrX:13840170-13840290 105 5.22e-05 AGCAAACACG GCTGCGGC ACAAAGCT chr3L:511970-512090 59 6.67e-05 CTTTAATAGA GGTGGTGC TTTGCTATAT chr2R:6632326-6632446 27 6.67e-05 TGCGACCAAT GCTGCTGC GACGACGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8122878-8122998 2.9e-06 62_[+3]_50 chr3R:31744170-31744290 1.2e-05 34_[+3]_78 chrX:1595871-1595991 1.2e-05 89_[+3]_23 chrX:2648088-2648208 2.5e-05 104_[+3]_8 chr2R:19913820-19913940 2.5e-05 4_[+3]_108 chr2R:8607234-8607354 2.5e-05 106_[+3]_6 chr2R:20327538-20327658 2.5e-05 19_[+3]_93 chr3R:12424136-12424256 2.5e-05 85_[+3]_27 chrX:2452880-2453000 2.9e-05 99_[+3]_13 chr3R:21260932-21261052 2.9e-05 20_[+3]_92 chr2L:8004108-8004228 2.9e-05 2_[+3]_110 chr2R:22525182-22525302 3.2e-05 27_[+3]_85 chr2R:8952307-8952427 4.6e-05 22_[+3]_90 chr3R:16154388-16154508 4.6e-05 21_[+3]_91 chr2R:9915202-9915322 4.6e-05 63_[+3]_49 chrX:13840170-13840290 5.2e-05 104_[+3]_8 chr3L:511970-512090 6.7e-05 58_[+3]_54 chr2R:6632326-6632446 6.7e-05 26_[+3]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSTGSBGT width=8 seqs=18 chr2R:8122878-8122998 ( 63) GCTGGCGT 1 chr3R:31744170-31744290 ( 35) GGTGGCGT 1 chrX:1595871-1595991 ( 90) GCTGCCGT 1 chrX:2648088-2648208 ( 105) GCTGGTGT 1 chr2R:19913820-19913940 ( 5) GGTGGGGT 1 chr2R:8607234-8607354 ( 107) GGTGGGGT 1 chr2R:20327538-20327658 ( 20) GCTGGTGT 1 chr3R:12424136-12424256 ( 86) GCTGGTGT 1 chrX:2452880-2453000 ( 100) GGTGCCGT 1 chr3R:21260932-21261052 ( 21) GCTGGGGC 1 chr2L:8004108-8004228 ( 3) GGTGCCGT 1 chr2R:22525182-22525302 ( 28) GGTGGCGC 1 chr2R:8952307-8952427 ( 23) GGTGCGGT 1 chr3R:16154388-16154508 ( 22) GCTGCTGT 1 chr2R:9915202-9915322 ( 64) GCTGCTGT 1 chrX:13840170-13840290 ( 105) GCTGCGGC 1 chr3L:511970-512090 ( 59) GGTGGTGC 1 chr2R:6632326-6632446 ( 27) GCTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.1e+004 -1081 -1081 252 -1081 -1081 167 135 -1081 -1081 -1081 -1081 162 -1081 -1081 252 -1081 -1081 135 168 -1081 -1081 94 68 26 -1081 -1081 252 -1081 -1081 68 -1081 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 0.000000 0.333333 0.277778 0.388889 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.000000 0.722222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSTGSBGT MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]TG[GC][TCG]G[TC] -------------------------------------------------------------------------------- Time 22.14 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTTTTCC MEME-4 width = 8 sites = 14 llr = 139 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9:::17a probability G a1:::13: matrix T ::aaa8:: bits 2.5 * * 2.3 * * 2.0 ** * 1.8 ** ** Relative 1.5 ***** ** Entropy 1.3 ***** ** (14.4 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTTTTCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1388239-1388359 76 1.02e-05 CTTTTAAAGA GCTTTTCC ATATAAATAT chrX:12596736-12596856 110 1.02e-05 TTTAACTTTT GCTTTTCC GCT chr3R:30280437-30280557 65 1.02e-05 GTTTTGTTTA GCTTTTCC TTTGATAAAA chr3R:25058735-25058855 99 1.02e-05 ACCACCTTGA GCTTTTCC TTTTTGTATC chrX:1595871-1595991 112 1.02e-05 TACCGCTCTT GCTTTTCC G chr2R:18811980-18812100 46 2.05e-05 AAACATTAAA GCTTTTGC TAACCACAAG chr2R:23668868-23668988 109 2.05e-05 CAGACCGTTA GCTTTTGC CGCA chrX:3346690-3346810 17 2.05e-05 CTTTCGATCT GCTTTTGC TTTCTTTGCG chr2R:11096429-11096549 26 2.05e-05 GGTGTTGTTT GCTTTTGC CACTGCCATC chr3L:3903407-3903527 11 2.59e-05 AATCCACTGT GCTTTCCC CGTGTGTGGC chr2R:23908285-23908405 84 2.59e-05 TTAATACTAC GCTTTCCC CCACTCGCGA chr3R:17595219-17595339 77 3.14e-05 TCAATAAAGC GCTTTGCC ACAACTGCTA chr3R:8029773-8029893 41 4.16e-05 AATACTTCTC GGTTTTCC TTTTTAAATC chr3R:12443291-12443411 91 4.16e-05 ATTTTTTATG GGTTTTCC TTAACGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1388239-1388359 1e-05 75_[+4]_37 chrX:12596736-12596856 1e-05 109_[+4]_3 chr3R:30280437-30280557 1e-05 64_[+4]_48 chr3R:25058735-25058855 1e-05 98_[+4]_14 chrX:1595871-1595991 1e-05 111_[+4]_1 chr2R:18811980-18812100 2e-05 45_[+4]_67 chr2R:23668868-23668988 2e-05 108_[+4]_4 chrX:3346690-3346810 2e-05 16_[+4]_96 chr2R:11096429-11096549 2e-05 25_[+4]_87 chr3L:3903407-3903527 2.6e-05 10_[+4]_102 chr2R:23908285-23908405 2.6e-05 83_[+4]_29 chr3R:17595219-17595339 3.1e-05 76_[+4]_36 chr3R:8029773-8029893 4.2e-05 40_[+4]_72 chr3R:12443291-12443411 4.2e-05 90_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTTTTCC width=8 seqs=14 chr3L:1388239-1388359 ( 76) GCTTTTCC 1 chrX:12596736-12596856 ( 110) GCTTTTCC 1 chr3R:30280437-30280557 ( 65) GCTTTTCC 1 chr3R:25058735-25058855 ( 99) GCTTTTCC 1 chrX:1595871-1595991 ( 112) GCTTTTCC 1 chr2R:18811980-18812100 ( 46) GCTTTTGC 1 chr2R:23668868-23668988 ( 109) GCTTTTGC 1 chrX:3346690-3346810 ( 17) GCTTTTGC 1 chr2R:11096429-11096549 ( 26) GCTTTTGC 1 chr3L:3903407-3903527 ( 11) GCTTTCCC 1 chr2R:23908285-23908405 ( 84) GCTTTCCC 1 chr3R:17595219-17595339 ( 77) GCTTTGCC 1 chr3R:8029773-8029893 ( 41) GGTTTTCC 1 chr3R:12443291-12443411 ( 91) GGTTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8217 E= 2.0e+004 -1045 -1045 252 -1045 -1045 230 -28 -1045 -1045 -1045 -1045 162 -1045 -1045 -1045 162 -1045 -1045 -1045 162 -1045 -28 -128 127 -1045 204 72 -1045 -1045 252 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.071429 0.785714 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTTCC MEME-4 regular expression -------------------------------------------------------------------------------- GCTTTT[CG]C -------------------------------------------------------------------------------- Time 28.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCACCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.7e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :a:a:aaa probability G a:a::::: matrix T :::::::: bits 2.5 **** *** 2.3 **** *** 2.0 **** *** 1.8 **** *** Relative 1.5 ******** Entropy 1.3 ******** (19.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23668868-23668988 65 1.58e-06 CGCCTTATAA GCGCACCC AAAAGTATCT chr2R:24629565-24629685 92 1.58e-06 TAGTACTTAA GCGCACCC CTTTTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23668868-23668988 1.6e-06 64_[+5]_48 chr2R:24629565-24629685 1.6e-06 91_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCACCC width=8 seqs=2 chr2R:23668868-23668988 ( 65) GCGCACCC 1 chr2R:24629565-24629685 ( 92) GCGCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.7e+005 -765 -765 252 -765 -765 252 -765 -765 -765 -765 252 -765 -765 252 -765 -765 161 -765 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 regular expression -------------------------------------------------------------------------------- GCGCACCC -------------------------------------------------------------------------------- Time 34.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23908285-23908405 2.06e-02 83_[+4(2.59e-05)]_29 chr3R:12424136-12424256 4.52e-02 85_[+3(2.46e-05)]_27 chrX:4551897-4552017 5.14e-03 74_[+2(3.19e-05)]_38 chr3L:5565177-5565297 1.95e-01 120 chr3L:20778769-20778889 3.98e-01 120 chr2R:18819422-18819542 4.79e-01 120 chr3L:11083782-11083902 1.08e-01 120 chr3L:1639161-1639281 1.06e-03 112_[+2(1.74e-05)] chr2L:8004108-8004228 7.18e-05 2_[+3(2.91e-05)]_27_[+1(5.90e-06)]_\ 75 chr2R:20327538-20327658 2.79e-03 19_[+3(2.46e-05)]_93 chr3L:10878958-10879078 8.07e-04 75_[+2(2.97e-06)]_37 chr3R:4654664-4654784 8.18e-02 120 chr3R:11761856-11761976 6.22e-03 120 chr2R:16720087-16720207 3.50e-01 120 chr2R:18126363-18126483 1.82e-03 42_[+5(5.73e-05)]_70 chr2R:24616149-24616269 3.40e-05 35_[+1(1.49e-05)]_41_[+2(2.97e-06)]_\ 28 chrX:10728187-10728307 5.28e-01 120 chr2R:6632326-6632446 2.76e-05 26_[+3(6.67e-05)]_19_[+1(9.04e-06)]_\ 59 chr3L:7243969-7244089 9.03e-02 120 chr2L:13082325-13082445 1.11e-03 78_[+2(2.34e-05)]_34 chr3R:17595219-17595339 6.72e-02 76_[+4(3.14e-05)]_36 chrX:13840170-13840290 7.04e-03 104_[+3(5.22e-05)]_8 chr2R:9915202-9915322 5.39e-03 63_[+3(4.62e-05)]_49 chrX:1595871-1595991 2.85e-05 89_[+3(1.17e-05)]_14_[+4(1.02e-05)]_\ 1 chr2R:23522590-23522710 1.21e-01 120 chr3L:7792365-7792485 5.29e-02 120 chr3R:25058735-25058855 6.52e-05 26_[+2(5.94e-06)]_64_[+4(1.02e-05)]_\ 14 chr2R:18168295-18168415 6.60e-01 120 chr3L:15150179-15150299 2.26e-01 120 chr2R:8122878-8122998 2.03e-02 62_[+3(2.93e-06)]_50 chr2L:7954719-7954839 5.82e-01 120 chr2L:10972389-10972509 3.02e-02 120 chr3L:3246916-3247036 1.00e+00 120 chrX:2196218-2196338 5.02e-01 120 chr3R:9240184-9240304 2.06e-02 48_[+5(5.73e-05)]_64 chr2R:8607234-8607354 3.63e-02 106_[+3(2.46e-05)]_6 chr3R:20765835-20765955 1.20e-01 120 chr2R:18178700-18178820 2.97e-02 120 chr2L:423312-423432 9.01e-01 120 chr3R:29076159-29076279 9.02e-01 120 chr2R:6144355-6144475 9.96e-01 120 chr3R:21260932-21261052 4.76e-02 20_[+3(2.91e-05)]_92 chr2R:6147664-6147784 6.97e-01 120 chr2R:6969443-6969563 9.79e-01 120 chr2L:1668843-1668963 3.33e-02 120 chr3L:16159503-16159623 1.17e-02 93_[+2(4.60e-05)]_19 chr3R:19603141-19603261 9.78e-01 120 chr3R:13372083-13372203 8.13e-01 120 chr2R:14161347-14161467 2.09e-01 120 chr2R:11096429-11096549 5.21e-03 25_[+4(2.05e-05)]_87 chr2L:5904698-5904818 8.38e-01 120 chr3R:16154388-16154508 3.18e-02 21_[+3(4.62e-05)]_91 chr3R:15896002-15896122 2.02e-02 120 chr3R:8142235-8142355 9.93e-01 120 chr3R:31878420-31878540 3.65e-02 8_[+1(3.61e-05)]_104 chr2R:6517808-6517928 2.47e-02 120 chr3R:18742464-18742584 9.70e-01 120 chr2L:14599475-14599595 5.68e-01 120 chr3L:14564562-14564682 2.10e-02 120 chr3R:17404290-17404410 3.73e-01 120 chr3R:27092374-27092494 3.78e-01 120 chrX:11550183-11550303 9.67e-01 120 chr3R:30281398-30281518 7.16e-01 120 chr2L:856125-856245 9.30e-02 120 chr3L:21972464-21972584 8.49e-01 120 chr3L:15977718-15977838 1.00e+00 120 chr3R:5100476-5100596 9.90e-01 120 chr3L:12616506-12616626 1.08e-01 120 chr2L:17782065-17782185 1.00e+00 120 chrX:4548801-4548921 2.82e-01 120 chr3R:17053496-17053616 9.34e-01 120 chr3R:24039325-24039445 4.43e-04 73_[+2(6.84e-05)]_39 chr2L:8859985-8860105 1.37e-01 120 chr3L:5183303-5183423 9.68e-01 120 chr3L:18143104-18143224 1.90e-01 120 chr3R:29283365-29283485 4.22e-01 120 chr2L:19364737-19364857 9.14e-01 120 chrX:14810644-14810764 9.06e-01 120 chr3R:30811319-30811439 8.44e-01 120 chr2R:22525182-22525302 2.38e-02 27_[+3(3.23e-05)]_85 chr3R:31439299-31439419 1.04e-01 120 chr3R:31956423-31956543 1.51e-01 120 chr3R:22635896-22636016 1.58e-01 101_[+2(5.72e-05)]_11 chr3L:3240427-3240547 9.57e-01 120 chr2R:19395978-19396098 6.28e-01 120 chr3R:25634002-25634122 9.97e-01 120 chr3L:3903407-3903527 9.47e-03 10_[+4(2.59e-05)]_102 chr2L:19490216-19490336 1.00e+00 120 chr2L:13882071-13882191 9.62e-01 120 chr3R:23888790-23888910 8.38e-01 120 chrX:14802734-14802854 3.55e-01 120 chr3L:1336420-1336540 1.15e-02 22_[+2(2.97e-06)]_90 chrX:8469164-8469284 9.02e-02 120 chr2R:14109817-14109937 2.45e-02 120 chr2R:6693194-6693314 6.82e-01 120 chrX:3390045-3390165 9.52e-01 120 chr3L:728056-728176 2.99e-04 100_[+1(5.90e-06)]_12 chr3R:22628083-22628203 2.05e-02 92_[+4(7.38e-05)]_20 chr3L:14055521-14055641 5.18e-01 120 chr2R:24629565-24629685 5.69e-03 91_[+5(1.58e-06)]_21 chr2L:8672399-8672519 9.86e-01 120 chr3L:21108644-21108764 9.99e-01 120 chr3R:29866807-29866927 1.30e-01 120 chr2R:8952307-8952427 2.10e-03 22_[+3(4.62e-05)]_90 chr3R:8154107-8154227 9.34e-01 120 chr2R:22529904-22530024 8.67e-02 120 chr2L:2221081-2221201 2.38e-04 56_[+2(6.28e-05)]_3_[+4(6.83e-05)]_\ 45 chrX:17490009-17490129 9.65e-01 120 chr3R:30280437-30280557 2.88e-02 64_[+4(1.02e-05)]_48 chr2L:5003169-5003289 6.97e-01 120 chrX:5786642-5786762 9.13e-01 120 chr3L:7783504-7783624 7.11e-01 120 chr2L:9438373-9438493 4.18e-01 120 chr2L:651000-651120 1.50e-01 120 chr3L:4357844-4357964 5.36e-01 120 chr3L:20549495-20549615 9.61e-01 120 chr2L:11395784-11395904 9.99e-01 120 chrX:12596736-12596856 5.99e-04 54_[+1(6.01e-05)]_47_[+4(1.02e-05)]_\ 3 chr2R:9839603-9839723 4.89e-01 120 chr2R:19849265-19849385 9.79e-01 120 chr3L:1087490-1087610 3.79e-02 120 chr2L:11328484-11328604 9.79e-01 120 chr3L:8157120-8157240 4.52e-01 120 chr3R:8893087-8893207 9.99e-01 120 chr3R:13841052-13841172 9.00e-01 120 chr3R:31225168-31225288 9.27e-03 42_[+5(5.73e-05)]_70 chr2L:17750266-17750386 3.76e-01 120 chr3L:1388239-1388359 4.77e-04 75_[+4(1.02e-05)]_37 chrX:263786-263906 1.59e-01 78_[+1(3.30e-05)]_34 chr3L:19504874-19504994 1.55e-01 120 chr3L:15637779-15637899 2.08e-03 95_[+1(6.33e-05)]_4_[+1(9.04e-06)]_\ 5 chr3L:17506120-17506240 8.09e-01 120 chr2L:11222199-11222319 9.98e-01 120 chr3R:19283686-19283806 9.41e-01 120 chrX:3411964-3412084 5.14e-02 120 chr2R:8603087-8603207 2.56e-02 120 chrX:4610572-4610692 3.89e-01 120 chr3R:12443291-12443411 9.13e-02 90_[+4(4.16e-05)]_22 chrX:13570390-13570510 2.35e-01 120 chr3L:664004-664124 9.60e-02 120 chr3L:16796756-16796876 2.55e-01 120 chr3L:12270032-12270152 1.30e-01 120 chr2L:18678394-18678514 6.49e-01 120 chr3L:5633713-5633833 9.32e-01 120 chr2L:6461672-6461792 2.75e-01 120 chr2R:19913820-19913940 2.00e-01 4_[+3(2.46e-05)]_108 chr4:132057-132177 6.03e-02 24_[+2(1.74e-05)]_88 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chr2L:20700704-20700824 7.44e-01 120 chr2R:13476893-13477013 3.34e-02 120 chr2R:23668868-23668988 1.53e-05 64_[+5(1.58e-06)]_36_[+4(2.05e-05)]_\ 4 chr3R:24298545-24298665 3.90e-03 59_[+1(1.49e-05)]_53 chr2R:14247577-14247697 8.87e-01 120 chrX:2518470-2518590 3.60e-01 120 chr3L:3343454-3343574 9.16e-01 120 chr3R:8029773-8029893 4.81e-02 40_[+4(4.16e-05)]_72 chr3R:31744170-31744290 7.49e-04 34_[+3(1.17e-05)]_78 chr2L:8229759-8229879 1.00e+00 120 chr2L:7320078-7320198 8.39e-02 18_[+2(4.31e-05)]_94 chr3L:16800178-16800298 2.10e-03 50_[+2(4.60e-05)]_62 chr3R:14361762-14361882 1.12e-06 [+1(9.04e-06)]_51_[+3(7.97e-05)]_20_\ [+4(8.47e-05)]_25 chr3R:10661239-10661359 9.19e-01 120 chrX:3408309-3408429 8.30e-02 120 chrX:4391520-4391640 2.98e-01 120 chr2L:19201989-19202109 7.84e-01 120 chr2L:530367-530487 2.04e-01 120 chr2R:18209839-18209959 2.30e-01 111_[+5(5.73e-05)]_1 chrX:5026191-5026311 9.16e-01 120 chr3R:19858438-19858558 2.80e-02 120 chr3R:23508461-23508581 7.97e-01 120 chr2L:5249889-5250009 1.39e-01 120 chr2R:18811980-18812100 4.08e-04 26_[+1(1.49e-05)]_11_[+4(2.05e-05)]_\ 67 chr3R:26508006-26508126 3.38e-01 120 chr3L:20649077-20649197 1.00e+00 120 chr2L:10615950-10616070 8.42e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************