******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/repo.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:18228950-18229070 1.0000 120 chr2L:869597-869717 1.0000 120 chr3L:639722-639842 1.0000 120 chr2R:8024376-8024496 1.0000 120 chr3L:2588142-2588262 1.0000 120 chr3R:16051477-16051597 1.0000 120 chr2L:7409072-7409192 1.0000 120 chr3R:16223343-16223463 1.0000 120 chr3R:25982864-25982984 1.0000 120 chr3R:17950405-17950525 1.0000 120 chr3R:29116587-29116707 1.0000 120 chr2R:18443038-18443158 1.0000 120 chr3L:17051306-17051426 1.0000 120 chr3L:1030975-1031095 1.0000 120 chr3R:18235909-18236029 1.0000 120 chr3R:21855582-21855702 1.0000 120 chr2R:22379389-22379509 1.0000 120 chr2R:14360126-14360246 1.0000 120 chr3L:2572191-2572311 1.0000 120 chr3R:24234036-24234156 1.0000 120 chr2R:19292008-19292128 1.0000 120 chr2L:21263066-21263186 1.0000 120 chr2R:18440111-18440231 1.0000 120 chr3L:18998222-18998342 1.0000 120 chr3L:9614074-9614194 1.0000 120 chr3R:6369111-6369231 1.0000 120 chrX:5894680-5894800 1.0000 120 chr2R:18351734-18351854 1.0000 120 chrX:4956044-4956164 1.0000 120 chr3R:14017780-14017900 1.0000 120 chr3R:14659617-14659737 1.0000 120 chr2R:17444184-17444304 1.0000 120 chr2R:17420065-17420185 1.0000 120 chr2R:9929511-9929631 1.0000 120 chr3R:27700861-27700981 1.0000 120 chr3L:17557090-17557210 1.0000 120 chr2L:7828873-7828993 1.0000 120 chrX:5564028-5564148 1.0000 120 chr2L:16324627-16324747 1.0000 120 chr3L:17055591-17055711 1.0000 120 chr3L:2377512-2377632 1.0000 120 chr2R:16150182-16150302 1.0000 120 chr2R:21091986-21092106 1.0000 120 chr3R:29757353-29757473 1.0000 120 chr3L:17651930-17652050 1.0000 120 chr3L:12037862-12037982 1.0000 120 chr3R:11950142-11950262 1.0000 120 chr2R:11593262-11593382 1.0000 120 chr2L:8334737-8334857 1.0000 120 chr2L:19200348-19200468 1.0000 120 chr2L:221941-222061 1.0000 120 chr3L:5753072-5753192 1.0000 120 chrX:17298031-17298151 1.0000 120 chr2R:21648259-21648379 1.0000 120 chr3R:29223368-29223488 1.0000 120 chr3L:1578724-1578844 1.0000 120 chr2R:13337250-13337370 1.0000 120 chr3R:15292476-15292596 1.0000 120 chr3R:27070094-27070214 1.0000 120 chr2L:7248244-7248364 1.0000 120 chr2L:19580958-19581078 1.0000 120 chr3L:8535080-8535200 1.0000 120 chr3L:15171938-15172058 1.0000 120 chr3R:10024125-10024245 1.0000 120 chr3L:1298621-1298741 1.0000 120 chr3L:11492619-11492739 1.0000 120 chr3L:692587-692707 1.0000 120 chr2R:15754434-15754554 1.0000 120 chr3R:16225857-16225977 1.0000 120 chr2R:23567437-23567557 1.0000 120 chr3L:7961313-7961433 1.0000 120 chr3L:17530718-17530838 1.0000 120 chr2L:14495150-14495270 1.0000 120 chrX:6868498-6868618 1.0000 120 chr2R:24780831-24780951 1.0000 120 chr2R:10838683-10838803 1.0000 120 chr2L:6795008-6795128 1.0000 120 chr2R:6938663-6938783 1.0000 120 chr3L:13845384-13845504 1.0000 120 chr2L:1118969-1119089 1.0000 120 chr2L:22121006-22121126 1.0000 120 chrX:19495431-19495551 1.0000 120 chr2R:14009201-14009321 1.0000 120 chr2R:7025026-7025146 1.0000 120 chrX:6110013-6110133 1.0000 120 chrX:17582813-17582933 1.0000 120 chrX:10067670-10067790 1.0000 120 chr3L:4227237-4227357 1.0000 120 chr3R:26005897-26006017 1.0000 120 chr2R:12916726-12916846 1.0000 120 chr3R:27244685-27244805 1.0000 120 chr2R:13506947-13507067 1.0000 120 chr3R:14625708-14625828 1.0000 120 chr3R:25215204-25215324 1.0000 120 chr3R:6816364-6816484 1.0000 120 chr3R:23888784-23888904 1.0000 120 chr2R:22640268-22640388 1.0000 120 chr3R:16948829-16948949 1.0000 120 chr3L:17009866-17009986 1.0000 120 chr2R:6652844-6652964 1.0000 120 chr2R:7141888-7142008 1.0000 120 chr3L:8449831-8449951 1.0000 120 chr2L:7277060-7277180 1.0000 120 chr3R:14020744-14020864 1.0000 120 chrX:4262830-4262950 1.0000 120 chrX:5420788-5420908 1.0000 120 chr3R:30099538-30099658 1.0000 120 chr2L:6956895-6957015 1.0000 120 chrX:5639246-5639366 1.0000 120 chr2R:9842450-9842570 1.0000 120 chrX:2159027-2159147 1.0000 120 chr3R:22639561-22639681 1.0000 120 chrX:10387801-10387921 1.0000 120 chr2R:10555441-10555561 1.0000 120 chr3R:21875173-21875293 1.0000 120 chr2R:23551465-23551585 1.0000 120 chr2L:18572174-18572294 1.0000 120 chr2R:8649595-8649715 1.0000 120 chr2R:15735465-15735585 1.0000 120 chr3R:28634947-28635067 1.0000 120 chr3L:12668098-12668218 1.0000 120 chr2L:3598596-3598716 1.0000 120 chr3L:9134491-9134611 1.0000 120 chr2R:11792788-11792908 1.0000 120 chr2L:14094776-14094896 1.0000 120 chr3R:27557157-27557277 1.0000 120 chr2R:7381780-7381900 1.0000 120 chr2L:17450147-17450267 1.0000 120 chr3L:9698319-9698439 1.0000 120 chrX:6279209-6279329 1.0000 120 chr3L:17846265-17846385 1.0000 120 chr2R:19141630-19141750 1.0000 120 chr2L:12351051-12351171 1.0000 120 chr3R:8190990-8191110 1.0000 120 chr2L:8610953-8611073 1.0000 120 chr3L:3765931-3766051 1.0000 120 chr2L:21051862-21051982 1.0000 120 chr3L:1463809-1463929 1.0000 120 chr2L:17784774-17784894 1.0000 120 chr2R:12586862-12586982 1.0000 120 chr3R:23760550-23760670 1.0000 120 chr2L:2494663-2494783 1.0000 120 chr2R:15922004-15922124 1.0000 120 chr2R:9971082-9971202 1.0000 120 chr3R:30814980-30815100 1.0000 120 chrX:1517694-1517814 1.0000 120 chr3L:3380470-3380590 1.0000 120 chr3R:24273220-24273340 1.0000 120 chr3L:4380382-4380502 1.0000 120 chrX:13822213-13822333 1.0000 120 chr2L:10437591-10437711 1.0000 120 chr3L:5922230-5922350 1.0000 120 chr2R:17430895-17431015 1.0000 120 chr2L:13878967-13879087 1.0000 120 chr3R:23028665-23028785 1.0000 120 chr3L:7368424-7368544 1.0000 120 chr3R:11948975-11949095 1.0000 120 chr2L:6339663-6339783 1.0000 120 chr2R:8018911-8019031 1.0000 120 chr3L:745588-745708 1.0000 120 chr2L:9613377-9613497 1.0000 120 chrX:1880400-1880520 1.0000 120 chr3R:16702978-16703098 1.0000 120 chrX:11854831-11854951 1.0000 120 chr2R:17869318-17869438 1.0000 120 chr3L:1139540-1139660 1.0000 120 chrX:1476968-1477088 1.0000 120 chr2R:24964899-24965019 1.0000 120 chr2L:6179105-6179225 1.0000 120 chr2R:19127960-19128080 1.0000 120 chr2R:13430023-13430143 1.0000 120 chrX:11548899-11549019 1.0000 120 chr2R:21183215-21183335 1.0000 120 chr3R:29089786-29089906 1.0000 120 chr2R:6524178-6524298 1.0000 120 chr2L:10756157-10756277 1.0000 120 chr2L:6343601-6343721 1.0000 120 chr2L:14376924-14377044 1.0000 120 chrX:3068390-3068510 1.0000 120 chr3R:10161302-10161422 1.0000 120 chr2L:4838570-4838690 1.0000 120 chr3R:20574832-20574952 1.0000 120 chr2R:13482276-13482396 1.0000 120 chr2R:22700882-22701002 1.0000 120 chr3L:21821901-21822021 1.0000 120 chr3R:21350141-21350261 1.0000 120 chrX:6352344-6352464 1.0000 120 chrX:6615586-6615706 1.0000 120 chr3R:12408347-12408467 1.0000 120 chr3R:11796945-11797065 1.0000 120 chr3R:23962996-23963116 1.0000 120 chr3R:23226777-23226897 1.0000 120 chr3L:4825709-4825829 1.0000 120 chr2L:868266-868386 1.0000 120 chr2L:20950823-20950943 1.0000 120 chr3R:24870823-24870943 1.0000 120 chr2R:11679317-11679437 1.0000 120 chr3R:31053889-31054009 1.0000 120 chr2L:21619222-21619342 1.0000 120 chrX:2166200-2166320 1.0000 120 chr3R:28859090-28859210 1.0000 120 chr3R:5686412-5686532 1.0000 120 chr3L:3090794-3090914 1.0000 120 chr3R:9055255-9055375 1.0000 120 chr2R:21049389-21049509 1.0000 120 chr2R:9440370-9440490 1.0000 120 chr3R:29556175-29556295 1.0000 120 chr2R:6707844-6707964 1.0000 120 chr3L:21536981-21537101 1.0000 120 chr2R:23818431-23818551 1.0000 120 chrX:19308102-19308222 1.0000 120 chrX:17176686-17176806 1.0000 120 chrX:22837505-22837625 1.0000 120 chr2R:14913202-14913322 1.0000 120 chr2R:7012341-7012461 1.0000 120 chr3R:25004912-25005032 1.0000 120 chr3R:5758978-5759098 1.0000 120 chr3L:1376163-1376283 1.0000 120 chr3L:18840626-18840746 1.0000 120 chr2R:25084315-25084435 1.0000 120 chr3R:25880260-25880380 1.0000 120 chr3R:4387625-4387745 1.0000 120 chr3L:1216532-1216652 1.0000 120 chr2L:901567-901687 1.0000 120 chr3R:26937607-26937727 1.0000 120 chr2L:12529387-12529507 1.0000 120 chr2R:11605080-11605200 1.0000 120 chr2L:3566714-3566834 1.0000 120 chr2L:5980845-5980965 1.0000 120 chrX:9664548-9664668 1.0000 120 chr2L:7307107-7307227 1.0000 120 chr3L:21509645-21509765 1.0000 120 chr3R:8801444-8801564 1.0000 120 chrX:16967578-16967698 1.0000 120 chr2R:10101694-10101814 1.0000 120 chrX:20257378-20257498 1.0000 120 chr2R:7525754-7525874 1.0000 120 chr3L:8720174-8720294 1.0000 120 chrX:5082980-5083100 1.0000 120 chr3L:5988752-5988872 1.0000 120 chr3R:21580207-21580327 1.0000 120 chr3R:4319574-4319694 1.0000 120 chrX:16320225-16320345 1.0000 120 chr3L:14190147-14190267 1.0000 120 chr3L:8425060-8425180 1.0000 120 chr3R:23922999-23923119 1.0000 120 chrX:15076117-15076237 1.0000 120 chrX:4010971-4011091 1.0000 120 chr3R:17002346-17002466 1.0000 120 chrX:4366280-4366400 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_repo/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/repo.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.228 G 0.224 T 0.267 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.228 G 0.224 T 0.267 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGCTGCC MEME-1 width = 8 sites = 8 llr = 90 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::8::aa probability G aaa3:a:: matrix T ::::a::: bits 2.2 *** *** 1.9 *** **** 1.7 *** **** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7525754-7525874 2 7.97e-06 T GGGCTGCC AACCATAAGA chr3R:10161302-10161422 28 7.97e-06 AAAAATACCA GGGCTGCC AGCTACACAA chr2R:8018911-8019031 106 7.97e-06 GTATGGCGGA GGGCTGCC AGGCAAG chr3R:22639561-22639681 25 7.97e-06 GATAAAAACA GGGCTGCC AGACTCATTG chrX:5420788-5420908 95 7.97e-06 TGCACAAACA GGGCTGCC CACGCTCATC chr2L:14495150-14495270 49 7.97e-06 CGCAGGGTCG GGGCTGCC AAGGGGTAGA chr2L:16324627-16324747 82 1.58e-05 TGTTCCTTTT GGGGTGCC GACTCCTGCT chr2R:8024376-8024496 24 1.58e-05 GGAGGGTAGC GGGGTGCC AAGTACGGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7525754-7525874 8e-06 1_[+1]_111 chr3R:10161302-10161422 8e-06 27_[+1]_85 chr2R:8018911-8019031 8e-06 105_[+1]_7 chr3R:22639561-22639681 8e-06 24_[+1]_88 chrX:5420788-5420908 8e-06 94_[+1]_18 chr2L:14495150-14495270 8e-06 48_[+1]_64 chr2L:16324627-16324747 1.6e-05 81_[+1]_31 chr2R:8024376-8024496 1.6e-05 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTGCC width=8 seqs=8 chr2R:7525754-7525874 ( 2) GGGCTGCC 1 chr3R:10161302-10161422 ( 28) GGGCTGCC 1 chr2R:8018911-8019031 ( 106) GGGCTGCC 1 chr3R:22639561-22639681 ( 25) GGGCTGCC 1 chrX:5420788-5420908 ( 95) GGGCTGCC 1 chr2L:14495150-14495270 ( 49) GGGCTGCC 1 chr2L:16324627-16324747 ( 82) GGGGTGCC 1 chr2R:8024376-8024496 ( 24) GGGGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 1.3e+003 -965 -965 216 -965 -965 -965 216 -965 -965 -965 216 -965 -965 172 16 -965 -965 -965 -965 190 -965 -965 216 -965 -965 213 -965 -965 -965 213 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGCC MEME-1 regular expression -------------------------------------------------------------------------------- GGG[CG]TGCC -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDGCWGC MEME-2 width = 8 sites = 36 llr = 305 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::6:3 pos.-specific C :81:a::8 probability G a22a::a: matrix T ::3::4:: bits 2.2 * ** * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (12.2 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus GT T A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15735465-15735585 107 1.06e-05 aacagcagca gcagcagc agcaac chr2L:7409072-7409192 100 1.06e-05 AGCACCTGGT GCAGCAGC CACCGCGGGC chr3L:692587-692707 113 2.06e-05 TTGTTTTGCT GCTGCAGC chr3L:17051306-17051426 41 2.06e-05 TGCTGGCGTT GCTGCAGC GGAAAGCGGA chr3R:29116587-29116707 104 2.06e-05 CTGTGCCACA GCTGCAGC GCCAGCCGA chr3L:639722-639842 13 2.06e-05 AAATTTCATA GCTGCAGC CGCATGGTTG chr3R:25004912-25005032 107 3.07e-05 TTTTTCCAGT GCAGCTGC TAAGTC chr3R:28859090-28859210 89 3.07e-05 TCGAAAATGT GCAGCTGC TCTCAGCGGC chrX:20257378-20257498 38 3.91e-05 AGCTAATTAA GCGGCAGC ACTGATTAGC chr2L:10756157-10756277 53 3.91e-05 TGTTTATAAA GCGGCAGC GGATTGCCCG chr3R:27244685-27244805 79 3.91e-05 tgcagcagct gcggcagc agcagaagAT chr3R:27700861-27700981 28 3.91e-05 GAGAGTGCCA GCGGCAGC GCCAGTGGCA chr2R:17444184-17444304 70 3.91e-05 TGTTTTTGCG GCGGCAGC ACGTGCACGT chr3R:21580207-21580327 44 4.86e-05 ttgcttgaca gctgctgc tgttgctact chr3R:16702978-16703098 100 4.86e-05 TCTCTCGCTG GCTGCTGC TGTCTTGCTC chr3L:9134491-9134611 89 4.86e-05 TCCACTTGTT GCTGCTGC TGTATCTTTT chr3L:13845384-13845504 65 4.86e-05 TACGAGACAA GCTGCTGC TCGAACGCAT chr3R:23962996-23963116 112 6.69e-05 AGCGCCAGGC GGAGCAGC G chr2R:10555441-10555561 34 6.69e-05 TGCTTTTTTT GGAGCAGC GCGCTGTTTC chr3L:5753072-5753192 34 6.69e-05 TCAGGACGCA GGAGCAGC CGAGCAGGCC chr3L:4227237-4227357 67 8.86e-05 TGAATTGGTG GCCGCAGC GCTGTTCCAT chr3R:14017780-14017900 80 8.86e-05 agaaccaaca gcagcaga gctagggaga chr2L:19580958-19581078 81 9.85e-05 TTGAGCGTGT GGTGCAGC GAGGCCTTGC chr2R:10838683-10838803 23 1.21e-04 TGTGCCTGCT GGAGCTGC CACCCAGAAA chr2R:14360126-14360246 38 1.21e-04 ATCAGCTCGC GGAGCTGC TCGTTGGTCA chrX:16320225-16320345 56 1.50e-04 AATCTGAAAT GCCGCTGC CGACCTGTGC chr3L:21821901-21822021 92 1.50e-04 AAATTCGCCG GCAGCTGA GCAAGATGTA chrX:3068390-3068510 82 1.50e-04 AACAAAGAAA GGGGCAGC CATGTTAAGC chr2R:6524178-6524298 76 1.50e-04 CTCGATTAGA GCAGCTGA ATGCTCTCTT chrX:6279209-6279329 94 1.50e-04 GTATTTATAG GCAGCTGA CTGGAAAGTC chr2R:18443038-18443158 19 1.50e-04 TACCCACCCA GCAGCTGA GTGCGCGCGC chr3R:4387625-4387745 90 1.69e-04 AATCTAATAT GGTGCTGC GGTCCTCCTC chr3L:4825709-4825829 31 1.69e-04 TACCATAGTT GCGGCAGA TATCAGAATA chr2L:6956895-6957015 51 1.69e-04 CATCCGTTCT GCGGCAGA GTTCGACATC chr2L:7307107-7307227 7 1.81e-04 CGGGTC GCTGCTGA CAAACGCAGA chr2R:11605080-11605200 37 2.31e-04 GAAGAGAGCC GCCGCAGA GAGCAACGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15735465-15735585 1.1e-05 106_[+2]_6 chr2L:7409072-7409192 1.1e-05 99_[+2]_13 chr3L:692587-692707 2.1e-05 112_[+2] chr3L:17051306-17051426 2.1e-05 40_[+2]_72 chr3R:29116587-29116707 2.1e-05 103_[+2]_9 chr3L:639722-639842 2.1e-05 12_[+2]_100 chr3R:25004912-25005032 3.1e-05 106_[+2]_6 chr3R:28859090-28859210 3.1e-05 88_[+2]_24 chrX:20257378-20257498 3.9e-05 37_[+2]_75 chr2L:10756157-10756277 3.9e-05 52_[+2]_60 chr3R:27244685-27244805 3.9e-05 78_[+2]_34 chr3R:27700861-27700981 3.9e-05 27_[+2]_85 chr2R:17444184-17444304 3.9e-05 69_[+2]_43 chr3R:21580207-21580327 4.9e-05 43_[+2]_69 chr3R:16702978-16703098 4.9e-05 99_[+2]_13 chr3L:9134491-9134611 4.9e-05 88_[+2]_24 chr3L:13845384-13845504 4.9e-05 64_[+2]_48 chr3R:23962996-23963116 6.7e-05 111_[+2]_1 chr2R:10555441-10555561 6.7e-05 33_[+2]_79 chr3L:5753072-5753192 6.7e-05 33_[+2]_79 chr3L:4227237-4227357 8.9e-05 66_[+2]_46 chr3R:14017780-14017900 8.9e-05 79_[+2]_33 chr2L:19580958-19581078 9.8e-05 80_[+2]_32 chr2R:10838683-10838803 0.00012 22_[+2]_90 chr2R:14360126-14360246 0.00012 37_[+2]_75 chrX:16320225-16320345 0.00015 55_[+2]_57 chr3L:21821901-21822021 0.00015 91_[+2]_21 chrX:3068390-3068510 0.00015 81_[+2]_31 chr2R:6524178-6524298 0.00015 75_[+2]_37 chrX:6279209-6279329 0.00015 93_[+2]_19 chr2R:18443038-18443158 0.00015 18_[+2]_94 chr3R:4387625-4387745 0.00017 89_[+2]_23 chr3L:4825709-4825829 0.00017 30_[+2]_82 chr2L:6956895-6957015 0.00017 50_[+2]_62 chr2L:7307107-7307227 0.00018 6_[+2]_106 chr2R:11605080-11605200 0.00023 36_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDGCWGC width=8 seqs=36 chr2R:15735465-15735585 ( 107) GCAGCAGC 1 chr2L:7409072-7409192 ( 100) GCAGCAGC 1 chr3L:692587-692707 ( 113) GCTGCAGC 1 chr3L:17051306-17051426 ( 41) GCTGCAGC 1 chr3R:29116587-29116707 ( 104) GCTGCAGC 1 chr3L:639722-639842 ( 13) GCTGCAGC 1 chr3R:25004912-25005032 ( 107) GCAGCTGC 1 chr3R:28859090-28859210 ( 89) GCAGCTGC 1 chrX:20257378-20257498 ( 38) GCGGCAGC 1 chr2L:10756157-10756277 ( 53) GCGGCAGC 1 chr3R:27244685-27244805 ( 79) GCGGCAGC 1 chr3R:27700861-27700981 ( 28) GCGGCAGC 1 chr2R:17444184-17444304 ( 70) GCGGCAGC 1 chr3R:21580207-21580327 ( 44) GCTGCTGC 1 chr3R:16702978-16703098 ( 100) GCTGCTGC 1 chr3L:9134491-9134611 ( 89) GCTGCTGC 1 chr3L:13845384-13845504 ( 65) GCTGCTGC 1 chr3R:23962996-23963116 ( 112) GGAGCAGC 1 chr2R:10555441-10555561 ( 34) GGAGCAGC 1 chr3L:5753072-5753192 ( 34) GGAGCAGC 1 chr3L:4227237-4227357 ( 67) GCCGCAGC 1 chr3R:14017780-14017900 ( 80) GCAGCAGA 1 chr2L:19580958-19581078 ( 81) GGTGCAGC 1 chr2R:10838683-10838803 ( 23) GGAGCTGC 1 chr2R:14360126-14360246 ( 38) GGAGCTGC 1 chrX:16320225-16320345 ( 56) GCCGCTGC 1 chr3L:21821901-21822021 ( 92) GCAGCTGA 1 chrX:3068390-3068510 ( 82) GGGGCAGC 1 chr2R:6524178-6524298 ( 76) GCAGCTGA 1 chrX:6279209-6279329 ( 94) GCAGCTGA 1 chr2R:18443038-18443158 ( 19) GCAGCTGA 1 chr3R:4387625-4387745 ( 90) GGTGCTGC 1 chr3L:4825709-4825829 ( 31) GCGGCAGA 1 chr2L:6956895-6957015 ( 51) GCGGCAGA 1 chr2L:7307107-7307227 ( 7) GCTGCTGA 1 chr2R:11605080-11605200 ( 37) GCCGCAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.1e+001 -1181 -1181 216 -1181 -1181 177 -1 -1181 47 -145 -1 19 -1181 -1181 216 -1181 -1181 214 -1181 -1181 105 -1181 -1181 64 -1181 -1181 216 -1181 -17 172 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.388889 0.083333 0.222222 0.305556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][ATG]GC[AT]G[CA] -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TSTGTGTG MEME-3 width = 8 sites = 23 llr = 207 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :4:::2:: probability G 26:a:6:a matrix T 8:a:a2a: bits 2.2 * 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 * *** ** Entropy 1.1 ***** ** (13.0 bits) 0.9 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5082980-5083100 29 1.28e-05 ACTACGCTCG TGTGTGTG AGTTAGTGTT chrX:6352344-6352464 22 1.28e-05 TTTTTTTCTG TGTGTGTG TTTTTTTCTA chr3L:1463809-1463929 112 1.28e-05 CAAATTGTCG TGTGTGTG G chr2R:13337250-13337370 83 1.28e-05 GACGAACAAC TGTGTGTG CCGCGGAACT chr3L:1578724-1578844 98 1.28e-05 TTCTTCTCAG TGTGTGTG CGAGCGGGAT chr2R:17444184-17444304 44 1.28e-05 CATGCATGGG TGTGTGTG TGTCTGCGTG chrX:22837505-22837625 62 2.58e-05 ACAATTAACG TCTGTGTG TTGTTGACAT chr3R:26005897-26006017 93 2.58e-05 ACTCGGAGAC TCTGTGTG CACGCAACGA chr2R:16150182-16150302 81 2.58e-05 CGAATCGGTT TCTGTGTG CCAATTGCAA chrX:19308102-19308222 48 4.11e-05 ctttttCGCC TGTGTTTG CATTTGTTGT chr2R:14009201-14009321 28 4.11e-05 GCAGGCCAGT TGTGTTTG TTGTCAGTCT chrX:15076117-15076237 7 5.41e-05 TATGCG TGTGTCTG CGTTCTGGAA chr3R:20574832-20574952 3 5.41e-05 GT TGTGTCTG TCCCACGGCC chr2L:4838570-4838690 106 6.48e-05 TATTGACGTG GGTGTGTG TACATAT chr2R:9971082-9971202 73 6.48e-05 CGCAAGGTGT GGTGTGTG ACTTGGCTTC chr2R:12586862-12586982 61 6.48e-05 GCGGGCGGGT GGTGTGTG AGAGCTGCTG chr2R:7525754-7525874 43 8.04e-05 GGTTGCCACA TCTGTTTG TTGCTCACCT chr2R:11792788-11792908 44 8.04e-05 ACTTTTGTGC TCTGTTTG CACTGTGCCG chr2L:7277060-7277180 15 8.04e-05 GACGGTACTG TCTGTTTG CTTGAATCTG chr2R:21648259-21648379 79 9.36e-05 agtCCCTTCC TCTGTCTG TCCGCGTTAT chr3L:2377512-2377632 14 9.36e-05 AAAATGTGTT TCTGTCTG GCGTTGCCAA chr2R:14360126-14360246 82 1.05e-04 CATTTTCGCT GCTGTGTG AGGTTAGGTG chr2L:21263066-21263186 93 1.68e-04 ATTGTTCCAA TGTTTGTG CTGGTGTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5082980-5083100 1.3e-05 28_[+3]_84 chrX:6352344-6352464 1.3e-05 21_[+3]_91 chr3L:1463809-1463929 1.3e-05 111_[+3]_1 chr2R:13337250-13337370 1.3e-05 82_[+3]_30 chr3L:1578724-1578844 1.3e-05 97_[+3]_15 chr2R:17444184-17444304 1.3e-05 43_[+3]_69 chrX:22837505-22837625 2.6e-05 61_[+3]_51 chr3R:26005897-26006017 2.6e-05 92_[+3]_20 chr2R:16150182-16150302 2.6e-05 80_[+3]_32 chrX:19308102-19308222 4.1e-05 47_[+3]_65 chr2R:14009201-14009321 4.1e-05 27_[+3]_85 chrX:15076117-15076237 5.4e-05 6_[+3]_106 chr3R:20574832-20574952 5.4e-05 2_[+3]_110 chr2L:4838570-4838690 6.5e-05 105_[+3]_7 chr2R:9971082-9971202 6.5e-05 72_[+3]_40 chr2R:12586862-12586982 6.5e-05 60_[+3]_52 chr2R:7525754-7525874 8e-05 42_[+3]_70 chr2R:11792788-11792908 8e-05 43_[+3]_69 chr2L:7277060-7277180 8e-05 14_[+3]_98 chr2R:21648259-21648379 9.4e-05 78_[+3]_34 chr3L:2377512-2377632 9.4e-05 13_[+3]_99 chr2R:14360126-14360246 0.0001 81_[+3]_31 chr2L:21263066-21263186 0.00017 92_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTGTGTG width=8 seqs=23 chrX:5082980-5083100 ( 29) TGTGTGTG 1 chrX:6352344-6352464 ( 22) TGTGTGTG 1 chr3L:1463809-1463929 ( 112) TGTGTGTG 1 chr2R:13337250-13337370 ( 83) TGTGTGTG 1 chr3L:1578724-1578844 ( 98) TGTGTGTG 1 chr2R:17444184-17444304 ( 44) TGTGTGTG 1 chrX:22837505-22837625 ( 62) TCTGTGTG 1 chr3R:26005897-26006017 ( 93) TCTGTGTG 1 chr2R:16150182-16150302 ( 81) TCTGTGTG 1 chrX:19308102-19308222 ( 48) TGTGTTTG 1 chr2R:14009201-14009321 ( 28) TGTGTTTG 1 chrX:15076117-15076237 ( 7) TGTGTCTG 1 chr3R:20574832-20574952 ( 3) TGTGTCTG 1 chr2L:4838570-4838690 ( 106) GGTGTGTG 1 chr2R:9971082-9971202 ( 73) GGTGTGTG 1 chr2R:12586862-12586982 ( 61) GGTGTGTG 1 chr2R:7525754-7525874 ( 43) TCTGTTTG 1 chr2R:11792788-11792908 ( 44) TCTGTTTG 1 chr2L:7277060-7277180 ( 15) TCTGTTTG 1 chr2R:21648259-21648379 ( 79) TCTGTCTG 1 chr3L:2377512-2377632 ( 14) TCTGTCTG 1 chr2R:14360126-14360246 ( 82) GCTGTGTG 1 chr2L:21263066-21263186 ( 93) TGTTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 2.6e+004 -1117 -1117 -36 163 -1117 78 144 -1117 -1117 -1117 -1117 190 -1117 -1117 210 -262 -1117 -1117 -1117 190 -1117 -39 144 -30 -1117 -1117 -1117 190 -1117 -1117 216 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.6e+004 0.000000 0.000000 0.173913 0.826087 0.000000 0.391304 0.608696 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.000000 1.000000 0.000000 0.173913 0.608696 0.217391 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- T[GC]TGT[GT]TG -------------------------------------------------------------------------------- Time 19.88 secs. ******************************************************************************** ******************************************************************************** MOTIF WKTTKTTK MEME-4 width = 8 sites = 42 llr = 338 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4::::::: pos.-specific C :::::::: probability G :4::4::5 matrix T 66aa6aa5 bits 2.2 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ******* (11.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTG consensus AG G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4838570-4838690 56 2.17e-05 GTTAATCCCT TTTTTTTG TTGTTGATAT chrX:5639246-5639366 54 2.17e-05 TTAGGTACTT TTTTTTTG TTTTTACATT chr2R:11593262-11593382 24 2.17e-05 TGATTGCACT TTTTTTTG TCTTTACATG chr2R:13482276-13482396 96 3.98e-05 GTGCTCGCAC TTTTGTTG CGTAGTGTAA chr2L:13878967-13879087 108 3.98e-05 GGCTTCGCAA TTTTGTTG GATAC chrX:1517694-1517814 90 3.98e-05 AAACTAACGG TTTTGTTG AATTGATCTA chr3R:14625708-14625828 113 3.98e-05 TTGAAGTGAG TTTTGTTG chr2R:23567437-23567557 105 3.98e-05 TTCGCATTAG TTTTGTTG GAGTGTGG chr3R:24234036-24234156 98 3.98e-05 CTGCTGTTGT TTTTGTTG TTGCAGCAGT chr2R:6652844-6652964 3 6.57e-05 AC TTTTTTTT CGAATTTGGC chr3R:25215204-25215324 106 6.57e-05 TTTTTTGTTG TTTTTTTT AATTATA chr3R:26005897-26006017 18 6.57e-05 ttggttttgt tttttttt TATTGGGGGT chrX:17582813-17582933 17 6.57e-05 TTTTTCTTTA TTTTTTTT CATTATGCCA chr3L:17651930-17652050 105 6.57e-05 TTTGTATAGT TTTTTTTT ATATCTGT chr3R:31053889-31054009 77 1.06e-04 CAGGGCTGGT TGTTTTTG TATATTGGCG chr3R:6816364-6816484 77 1.06e-04 CGGTAAGCGG TGTTTTTG CCAACAGCCA chr3R:29223368-29223488 18 1.06e-04 TCGGAAAACT TGTTTTTG TGTTGCTATC chr3L:17055591-17055711 6 1.06e-04 GCCAC TTTTGTTT ATGACCAACA chr2R:17444184-17444304 60 1.06e-04 TGTGTCTGCG TGTTTTTG CGGCGGCAGC chr3L:692587-692707 98 1.21e-04 TCCCACTCAC TGTTGTTG TTTTGCTGCT chr2R:19141630-19141750 55 1.65e-04 ggacacggaC TGTTTTTT CCGGGAAAAA chr2L:6956895-6957015 11 1.65e-04 CAAATTGTAC ATTTTTTG CGGATGTCCA chr2R:10838683-10838803 72 1.65e-04 GCGGTCACAC TGTTTTTT TCACTGCGCA chrX:6868498-6868618 113 1.65e-04 CCAAACAAAT TGTTTTTT chr3R:14659617-14659737 31 1.65e-04 CTTATTGGAT TGTTTTTT TCTTTCCTTT chr2L:21619222-21619342 36 2.03e-04 cgcagcgaaa atttgttg actcatgttg chr3L:1298621-1298741 22 2.03e-04 CAAGAGAGAT TGTTGTTT TCGAAATATC chr2L:7248244-7248364 113 2.03e-04 GGCGTTCTCT ATTTGTTG chr3L:1578724-1578844 65 2.03e-04 TAATTGTCGC ATTTGTTG CGACCACACA chrX:6352344-6352464 11 2.30e-04 AGGAAAGCAA ATTTTTTT CTGTGTGTGT chrX:11854831-11854951 100 2.30e-04 TTAGTCACAT ATTTTTTT ATCGAATCGA chr3L:15171938-15172058 82 2.30e-04 GAATTTACTA ATTTTTTT CAGTGTAGAA chr2R:21091986-21092106 47 2.30e-04 TACATAGACC ATTTTTTT CGTCAGTGTA chr3L:18840626-18840746 89 2.72e-04 ACTCAGAAAA ATTTGTTT AGCTCAGCAT chr3R:20574832-20574952 108 2.72e-04 TCCATCGCAT ATTTGTTT ACCGT chr2R:6524178-6524298 106 2.72e-04 CCAGCTGTAT ATTTGTTT GCTCGAG chr2R:18351734-18351854 58 2.72e-04 ATGGGAATTA AGTTTTTG TATATTTGTG chr2L:2494663-2494783 100 2.88e-04 CAGAAAGCAT AGTTGTTG CAAGGGTCGA chr2R:8649595-8649715 3 2.88e-04 GA AGTTGTTG GCCTGGCTGG chr3R:8801444-8801564 7 3.11e-04 ATAGAT AGTTTTTT ATGAGTTAGG chr3L:9698319-9698439 98 3.11e-04 TGGAATAATA AGTTTTTT ATTTTCCGTG chr2L:868266-868386 113 3.30e-04 TGGCCTTTTG AGTTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4838570-4838690 2.2e-05 55_[+4]_57 chrX:5639246-5639366 2.2e-05 53_[+4]_59 chr2R:11593262-11593382 2.2e-05 23_[+4]_89 chr2R:13482276-13482396 4e-05 95_[+4]_17 chr2L:13878967-13879087 4e-05 107_[+4]_5 chrX:1517694-1517814 4e-05 89_[+4]_23 chr3R:14625708-14625828 4e-05 112_[+4] chr2R:23567437-23567557 4e-05 104_[+4]_8 chr3R:24234036-24234156 4e-05 97_[+4]_15 chr2R:6652844-6652964 6.6e-05 2_[+4]_110 chr3R:25215204-25215324 6.6e-05 105_[+4]_7 chr3R:26005897-26006017 6.6e-05 17_[+4]_95 chrX:17582813-17582933 6.6e-05 16_[+4]_96 chr3L:17651930-17652050 6.6e-05 104_[+4]_8 chr3R:31053889-31054009 0.00011 76_[+4]_36 chr3R:6816364-6816484 0.00011 76_[+4]_36 chr3R:29223368-29223488 0.00011 17_[+4]_95 chr3L:17055591-17055711 0.00011 5_[+4]_107 chr2R:17444184-17444304 0.00011 59_[+4]_53 chr3L:692587-692707 0.00012 97_[+4]_15 chr2R:19141630-19141750 0.00017 54_[+4]_58 chr2L:6956895-6957015 0.00017 10_[+4]_102 chr2R:10838683-10838803 0.00017 71_[+4]_41 chrX:6868498-6868618 0.00017 112_[+4] chr3R:14659617-14659737 0.00017 30_[+4]_82 chr2L:21619222-21619342 0.0002 35_[+4]_77 chr3L:1298621-1298741 0.0002 21_[+4]_91 chr2L:7248244-7248364 0.0002 112_[+4] chr3L:1578724-1578844 0.0002 64_[+4]_48 chrX:6352344-6352464 0.00023 10_[+4]_102 chrX:11854831-11854951 0.00023 99_[+4]_13 chr3L:15171938-15172058 0.00023 81_[+4]_31 chr2R:21091986-21092106 0.00023 46_[+4]_66 chr3L:18840626-18840746 0.00027 88_[+4]_24 chr3R:20574832-20574952 0.00027 107_[+4]_5 chr2R:6524178-6524298 0.00027 105_[+4]_7 chr2R:18351734-18351854 0.00027 57_[+4]_55 chr2L:2494663-2494783 0.00029 99_[+4]_13 chr2R:8649595-8649715 0.00029 2_[+4]_110 chr3R:8801444-8801564 0.00031 6_[+4]_106 chr3L:9698319-9698439 0.00031 97_[+4]_15 chr2L:868266-868386 0.00033 112_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKTTKTTK width=8 seqs=42 chr2L:4838570-4838690 ( 56) TTTTTTTG 1 chrX:5639246-5639366 ( 54) TTTTTTTG 1 chr2R:11593262-11593382 ( 24) TTTTTTTG 1 chr2R:13482276-13482396 ( 96) TTTTGTTG 1 chr2L:13878967-13879087 ( 108) TTTTGTTG 1 chrX:1517694-1517814 ( 90) TTTTGTTG 1 chr3R:14625708-14625828 ( 113) TTTTGTTG 1 chr2R:23567437-23567557 ( 105) TTTTGTTG 1 chr3R:24234036-24234156 ( 98) TTTTGTTG 1 chr2R:6652844-6652964 ( 3) TTTTTTTT 1 chr3R:25215204-25215324 ( 106) TTTTTTTT 1 chr3R:26005897-26006017 ( 18) TTTTTTTT 1 chrX:17582813-17582933 ( 17) TTTTTTTT 1 chr3L:17651930-17652050 ( 105) TTTTTTTT 1 chr3R:31053889-31054009 ( 77) TGTTTTTG 1 chr3R:6816364-6816484 ( 77) TGTTTTTG 1 chr3R:29223368-29223488 ( 18) TGTTTTTG 1 chr3L:17055591-17055711 ( 6) TTTTGTTT 1 chr2R:17444184-17444304 ( 60) TGTTTTTG 1 chr3L:692587-692707 ( 98) TGTTGTTG 1 chr2R:19141630-19141750 ( 55) TGTTTTTT 1 chr2L:6956895-6957015 ( 11) ATTTTTTG 1 chr2R:10838683-10838803 ( 72) TGTTTTTT 1 chrX:6868498-6868618 ( 113) TGTTTTTT 1 chr3R:14659617-14659737 ( 31) TGTTTTTT 1 chr2L:21619222-21619342 ( 36) ATTTGTTG 1 chr3L:1298621-1298741 ( 22) TGTTGTTT 1 chr2L:7248244-7248364 ( 113) ATTTGTTG 1 chr3L:1578724-1578844 ( 65) ATTTGTTG 1 chrX:6352344-6352464 ( 11) ATTTTTTT 1 chrX:11854831-11854951 ( 100) ATTTTTTT 1 chr3L:15171938-15172058 ( 82) ATTTTTTT 1 chr2R:21091986-21092106 ( 47) ATTTTTTT 1 chr3L:18840626-18840746 ( 89) ATTTGTTT 1 chr3R:20574832-20574952 ( 108) ATTTGTTT 1 chr2R:6524178-6524298 ( 106) ATTTGTTT 1 chr2R:18351734-18351854 ( 58) AGTTTTTG 1 chr2L:2494663-2494783 ( 100) AGTTGTTG 1 chr2R:8649595-8649715 ( 3) AGTTGTTG 1 chr3R:8801444-8801564 ( 7) AGTTTTTT 1 chr3L:9698319-9698439 ( 98) AGTTTTTT 1 chr2L:868266-868386 ( 113) AGTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 1.0e+005 52 -1204 -1204 116 -1204 -1204 77 121 -1204 -1204 -1204 190 -1204 -1204 -1204 190 -1204 -1204 94 110 -1204 -1204 -1204 190 -1204 -1204 -1204 190 -1204 -1204 116 90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.0e+005 0.404762 0.000000 0.000000 0.595238 0.000000 0.000000 0.380952 0.619048 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTKTTK MEME-4 regular expression -------------------------------------------------------------------------------- [TA][TG]TT[TG]TT[GT] -------------------------------------------------------------------------------- Time 26.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-5 width = 8 sites = 32 llr = 272 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a392a3a pos.-specific C a:8:8:6: probability G :::1:::: matrix T ::::::1: bits 2.2 * 1.9 * 1.7 ** * * 1.5 ** * * Relative 1.3 ****** * Entropy 1.1 ****** * (12.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6615586-6615706 108 1.71e-05 ATTTCCAACA CACACACA TATGC chrX:3068390-3068510 9 1.71e-05 CCAACGCT CACACACA CGCACCAAAA chr3L:7368424-7368544 50 1.71e-05 TGTacacaca cacacaca tgcacacgca chr2L:8610953-8611073 4 1.71e-05 AAG CACACACA GATACTAAAT chr2R:7381780-7381900 32 1.71e-05 CGCTCACACG CACACACA AATACTCGCA chr3L:4227237-4227357 111 1.71e-05 CTCACTcaca cacacaca ca chr3L:5753072-5753192 107 1.71e-05 AACCCACACT CACACACA AACGCA chr2L:221941-222061 65 1.71e-05 ACACTCCTCA CACACACA CATAGGTAGG chr2R:17444184-17444304 106 1.71e-05 ATGTATGTca cacacaca gtcacag chr3L:745588-745708 75 3.82e-05 TTGGCAAAAA CACACAAA AAAAATTTAT chr3R:11948975-11949095 27 3.82e-05 TTCTCGCACG CACACAAA TTTATTATAA chr3L:7961313-7961433 54 3.82e-05 TACAATTATG CACACAAA CAAGCCAAGA chr2L:2494663-2494783 53 5.94e-05 CGCCCTTGTG CAAACACA CGGAAAACCC chr2L:21051862-21051982 12 5.94e-05 TTTTCCGCTA CAAACACA AAAAATGCGA chr3R:29757353-29757473 101 5.94e-05 GCCTCCAAGG CAAACACA AAGAGCGATC chrX:5420788-5420908 87 8.05e-05 GCAGCACATG CACAAACA GGGCTGCCCA chr2L:7828873-7828993 2 8.05e-05 a cacaaaca aacagacaag chr3R:23962996-23963116 9 9.41e-05 TGGGCACG CACGCACA CAGGAATTCG chr3R:28634947-28635067 6 9.41e-05 TCGAT CACGCACA TTTAACTCGG chr3L:17009866-17009986 70 9.41e-05 AATCAGAGCC CACGCACA AGTTAAGCAA chr3R:18228950-18229070 40 9.41e-05 ACAATGCTCA CACGCACA CGTCCACACA chr2R:21049389-21049509 30 1.14e-04 tacatacata cacacata TGTATATGGC chr2R:12586862-12586982 11 1.14e-04 AATTCAGACG CACACATA GAAAATATTT chr3L:11492619-11492739 7 1.14e-04 GGGAGA CACACATA TGTGGACACA chr3L:21536981-21537101 5 1.40e-04 TAAT CAAACAAA AATATCGCAC chrX:6868498-6868618 104 1.40e-04 AAAAGAGAAC CAAACAAA TTGTTTTTT chr2L:19200348-19200468 99 1.40e-04 AATTATTCAC CAAACAAA ATAAACCCAT chrX:16320225-16320345 96 1.66e-04 ATCAGAGTTG CACAAAAA GAGACCATCG chr2R:7141888-7142008 108 1.66e-04 ATTTTACCAA CACAAAAA CTAAA chr3L:17055591-17055711 62 1.66e-04 AAGGTTTGCT CACAAAAA AGTGCCAAAT chr2L:12529387-12529507 34 2.09e-04 TGGAGAGAGG CAAAAACA TGAATTAAAT chr3R:5758978-5759098 105 2.09e-04 ATTAAGCGCC CAAAAACA ACGTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6615586-6615706 1.7e-05 107_[+5]_5 chrX:3068390-3068510 1.7e-05 8_[+5]_104 chr3L:7368424-7368544 1.7e-05 49_[+5]_63 chr2L:8610953-8611073 1.7e-05 3_[+5]_109 chr2R:7381780-7381900 1.7e-05 31_[+5]_81 chr3L:4227237-4227357 1.7e-05 110_[+5]_2 chr3L:5753072-5753192 1.7e-05 106_[+5]_6 chr2L:221941-222061 1.7e-05 64_[+5]_48 chr2R:17444184-17444304 1.7e-05 105_[+5]_7 chr3L:745588-745708 3.8e-05 74_[+5]_38 chr3R:11948975-11949095 3.8e-05 26_[+5]_86 chr3L:7961313-7961433 3.8e-05 53_[+5]_59 chr2L:2494663-2494783 5.9e-05 52_[+5]_60 chr2L:21051862-21051982 5.9e-05 11_[+5]_101 chr3R:29757353-29757473 5.9e-05 100_[+5]_12 chrX:5420788-5420908 8.1e-05 86_[+5]_26 chr2L:7828873-7828993 8.1e-05 1_[+5]_111 chr3R:23962996-23963116 9.4e-05 8_[+5]_104 chr3R:28634947-28635067 9.4e-05 5_[+5]_107 chr3L:17009866-17009986 9.4e-05 69_[+5]_43 chr3R:18228950-18229070 9.4e-05 39_[+5]_73 chr2R:21049389-21049509 0.00011 29_[+5]_83 chr2R:12586862-12586982 0.00011 10_[+5]_102 chr3L:11492619-11492739 0.00011 6_[+5]_106 chr3L:21536981-21537101 0.00014 4_[+5]_108 chrX:6868498-6868618 0.00014 103_[+5]_9 chr2L:19200348-19200468 0.00014 98_[+5]_14 chrX:16320225-16320345 0.00017 95_[+5]_17 chr2R:7141888-7142008 0.00017 107_[+5]_5 chr3L:17055591-17055711 0.00017 61_[+5]_51 chr2L:12529387-12529507 0.00021 33_[+5]_79 chr3R:5758978-5759098 0.00021 104_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=32 chrX:6615586-6615706 ( 108) CACACACA 1 chrX:3068390-3068510 ( 9) CACACACA 1 chr3L:7368424-7368544 ( 50) CACACACA 1 chr2L:8610953-8611073 ( 4) CACACACA 1 chr2R:7381780-7381900 ( 32) CACACACA 1 chr3L:4227237-4227357 ( 111) CACACACA 1 chr3L:5753072-5753192 ( 107) CACACACA 1 chr2L:221941-222061 ( 65) CACACACA 1 chr2R:17444184-17444304 ( 106) CACACACA 1 chr3L:745588-745708 ( 75) CACACAAA 1 chr3R:11948975-11949095 ( 27) CACACAAA 1 chr3L:7961313-7961433 ( 54) CACACAAA 1 chr2L:2494663-2494783 ( 53) CAAACACA 1 chr2L:21051862-21051982 ( 12) CAAACACA 1 chr3R:29757353-29757473 ( 101) CAAACACA 1 chrX:5420788-5420908 ( 87) CACAAACA 1 chr2L:7828873-7828993 ( 2) CACAAACA 1 chr3R:23962996-23963116 ( 9) CACGCACA 1 chr3R:28634947-28635067 ( 6) CACGCACA 1 chr3L:17009866-17009986 ( 70) CACGCACA 1 chr3R:18228950-18229070 ( 40) CACGCACA 1 chr2R:21049389-21049509 ( 30) CACACATA 1 chr2R:12586862-12586982 ( 11) CACACATA 1 chr3L:11492619-11492739 ( 7) CACACATA 1 chr3L:21536981-21537101 ( 5) CAAACAAA 1 chrX:6868498-6868618 ( 104) CAAACAAA 1 chr2L:19200348-19200468 ( 99) CAAACAAA 1 chrX:16320225-16320345 ( 96) CACAAAAA 1 chr2R:7141888-7142008 ( 108) CACAAAAA 1 chr3L:17055591-17055711 ( 62) CACAAAAA 1 chr2L:12529387-12529507 ( 34) CAAAAACA 1 chr3R:5758978-5759098 ( 105) CAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 1.3e+004 -1164 214 -1164 -1164 183 -1164 -1164 -1164 -17 172 -1164 -1164 164 -1164 -84 -1164 -36 178 -1164 -1164 183 -1164 -1164 -1164 0 146 -1164 -151 183 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.3e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.218750 0.781250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.281250 0.625000 0.000000 0.093750 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 regular expression -------------------------------------------------------------------------------- CA[CA]A[CA]A[CA]A -------------------------------------------------------------------------------- Time 32.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18228950-18229070 2.02e-01 24_[+5(5.94e-05)]_7_[+5(9.41e-05)]_\ 73 chr2L:869597-869717 7.81e-01 120 chr3L:639722-639842 1.78e-02 12_[+2(2.06e-05)]_100 chr2R:8024376-8024496 2.11e-01 23_[+1(1.58e-05)]_89 chr3L:2588142-2588262 1.43e-01 120 chr3R:16051477-16051597 8.74e-01 120 chr2L:7409072-7409192 1.73e-03 48_[+2(8.86e-05)]_43_[+2(1.06e-05)]_\ 13 chr3R:16223343-16223463 8.96e-01 120 chr3R:25982864-25982984 9.52e-01 120 chr3R:17950405-17950525 8.57e-01 120 chr3R:29116587-29116707 3.14e-02 103_[+2(2.06e-05)]_9 chr2R:18443038-18443158 8.02e-02 120 chr3L:17051306-17051426 1.43e-01 40_[+2(2.06e-05)]_72 chr3L:1030975-1031095 5.90e-01 120 chr3R:18235909-18236029 3.98e-01 120 chr3R:21855582-21855702 6.96e-01 120 chr2R:22379389-22379509 3.71e-02 120 chr2R:14360126-14360246 1.47e-02 120 chr3L:2572191-2572311 3.71e-02 120 chr3R:24234036-24234156 1.30e-03 97_[+4(3.98e-05)]_15 chr2R:19292008-19292128 6.12e-02 120 chr2L:21263066-21263186 2.37e-02 120 chr2R:18440111-18440231 9.91e-01 120 chr3L:18998222-18998342 9.26e-01 120 chr3L:9614074-9614194 5.02e-01 120 chr3R:6369111-6369231 4.29e-01 120 chrX:5894680-5894800 8.93e-02 120 chr2R:18351734-18351854 3.41e-02 120 chrX:4956044-4956164 9.67e-01 120 chr3R:14017780-14017900 4.67e-01 12_[+2(8.86e-05)]_59_[+2(8.86e-05)]_\ 33 chr3R:14659617-14659737 2.07e-01 120 chr2R:17444184-17444304 1.54e-06 7_[+5(9.41e-05)]_28_[+3(1.28e-05)]_\ 18_[+2(3.91e-05)]_26_[+5(1.71e-05)]_9 chr2R:17420065-17420185 7.78e-01 120 chr2R:9929511-9929631 2.94e-01 120 chr3R:27700861-27700981 1.21e-01 27_[+2(3.91e-05)]_85 chr3L:17557090-17557210 5.14e-01 120 chr2L:7828873-7828993 6.57e-02 1_[+5(8.05e-05)]_111 chrX:5564028-5564148 1.85e-01 120 chr2L:16324627-16324747 6.02e-02 81_[+1(1.58e-05)]_31 chr3L:17055591-17055711 1.45e-02 120 chr3L:2377512-2377632 1.06e-02 13_[+3(9.36e-05)]_99 chr2R:16150182-16150302 7.48e-02 80_[+3(2.58e-05)]_32 chr2R:21091986-21092106 3.40e-01 120 chr3R:29757353-29757473 1.42e-01 100_[+5(5.94e-05)]_12 chr3L:17651930-17652050 4.43e-02 103_[+4(6.57e-05)]_9 chr3L:12037862-12037982 4.15e-01 120 chr3R:11950142-11950262 8.70e-01 120 chr2R:11593262-11593382 8.47e-02 23_[+4(2.17e-05)]_89 chr2L:8334737-8334857 9.14e-02 120 chr2L:19200348-19200468 3.75e-01 120 chr2L:221941-222061 2.95e-02 62_[+5(1.71e-05)]_50 chr3L:5753072-5753192 2.82e-03 33_[+2(6.69e-05)]_65_[+5(1.71e-05)]_\ 6 chrX:17298031-17298151 9.35e-01 120 chr2R:21648259-21648379 1.01e-01 78_[+3(9.36e-05)]_34 chr3R:29223368-29223488 3.08e-02 120 chr3L:1578724-1578844 8.24e-05 97_[+3(1.28e-05)]_5_[+1(3.50e-05)]_\ 2 chr2R:13337250-13337370 1.58e-02 82_[+3(1.28e-05)]_30 chr3R:15292476-15292596 9.86e-01 120 chr3R:27070094-27070214 2.64e-01 120 chr2L:7248244-7248364 2.09e-01 120 chr2L:19580958-19581078 8.04e-02 80_[+2(9.85e-05)]_32 chr3L:8535080-8535200 4.81e-01 120 chr3L:15171938-15172058 3.52e-01 120 chr3R:10024125-10024245 8.71e-01 120 chr3L:1298621-1298741 4.01e-02 120 chr3L:11492619-11492739 3.66e-02 120 chr3L:692587-692707 5.71e-03 112_[+2(2.06e-05)] chr2R:15754434-15754554 9.79e-01 120 chr3R:16225857-16225977 3.81e-01 120 chr2R:23567437-23567557 5.44e-02 104_[+4(3.98e-05)]_8 chr3L:7961313-7961433 1.58e-01 53_[+5(3.82e-05)]_59 chr3L:17530718-17530838 2.70e-01 120 chr2L:14495150-14495270 9.08e-03 48_[+1(7.97e-06)]_64 chrX:6868498-6868618 8.96e-03 120 chr2R:24780831-24780951 2.94e-01 120 chr2R:10838683-10838803 2.66e-04 120 chr2L:6795008-6795128 1.93e-01 120 chr2R:6938663-6938783 5.69e-01 120 chr3L:13845384-13845504 2.57e-01 64_[+2(4.86e-05)]_48 chr2L:1118969-1119089 3.72e-01 120 chr2L:22121006-22121126 9.40e-01 120 chrX:19495431-19495551 6.57e-02 120 chr2R:14009201-14009321 4.58e-02 27_[+3(4.11e-05)]_85 chr2R:7025026-7025146 9.01e-01 120 chrX:6110013-6110133 7.48e-02 120 chrX:17582813-17582933 2.88e-01 16_[+4(6.57e-05)]_96 chrX:10067670-10067790 7.16e-01 120 chr3L:4227237-4227357 8.41e-03 66_[+2(8.86e-05)]_32_[+5(1.71e-05)]_\ 6 chr3R:26005897-26006017 7.64e-03 16_[+4(6.57e-05)]_68_[+3(2.58e-05)]_\ 20 chr2R:12916726-12916846 8.36e-02 120 chr3R:27244685-27244805 4.98e-02 69_[+2(1.06e-05)]_4_[+2(1.06e-05)]_\ 31 chr2R:13506947-13507067 2.99e-01 120 chr3R:14625708-14625828 2.88e-02 112_[+4(3.98e-05)] chr3R:25215204-25215324 1.11e-01 97_[+4(3.98e-05)]_[+4(6.57e-05)]_7 chr3R:6816364-6816484 4.93e-02 120 chr3R:23888784-23888904 4.87e-01 120 chr2R:22640268-22640388 8.91e-01 120 chr3R:16948829-16948949 5.33e-01 120 chr3L:17009866-17009986 3.86e-01 69_[+5(9.41e-05)]_43 chr2R:6652844-6652964 8.08e-03 2_[+4(6.57e-05)]_110 chr2R:7141888-7142008 1.14e-01 120 chr3L:8449831-8449951 5.75e-01 120 chr2L:7277060-7277180 2.59e-01 14_[+3(8.04e-05)]_98 chr3R:14020744-14020864 6.89e-01 120 chrX:4262830-4262950 2.17e-01 120 chrX:5420788-5420908 2.34e-03 86_[+5(8.05e-05)]_[+1(7.97e-06)]_18 chr3R:30099538-30099658 7.05e-01 120 chr2L:6956895-6957015 4.24e-02 120 chrX:5639246-5639366 4.08e-02 53_[+4(2.17e-05)]_59 chr2R:9842450-9842570 8.80e-01 120 chrX:2159027-2159147 6.43e-01 120 chr3R:22639561-22639681 3.95e-02 24_[+1(7.97e-06)]_88 chrX:10387801-10387921 6.44e-01 120 chr2R:10555441-10555561 3.45e-03 26_[+4(2.17e-05)]_86 chr3R:21875173-21875293 3.57e-01 120 chr2R:23551465-23551585 3.78e-01 120 chr2L:18572174-18572294 7.03e-01 120 chr2R:8649595-8649715 5.07e-02 120 chr2R:15735465-15735585 9.31e-02 73_[+2(1.06e-05)]_19_[+2(1.06e-05)]_\ 1_[+2(1.06e-05)]_3 chr3R:28634947-28635067 9.86e-02 5_[+5(9.41e-05)]_107 chr3L:12668098-12668218 9.83e-01 120 chr2L:3598596-3598716 6.62e-01 120 chr3L:9134491-9134611 5.16e-03 88_[+2(4.86e-05)]_24 chr2R:11792788-11792908 4.21e-02 43_[+3(8.04e-05)]_69 chr2L:14094776-14094896 8.57e-01 120 chr3R:27557157-27557277 7.84e-01 120 chr2R:7381780-7381900 8.21e-02 31_[+5(1.71e-05)]_81 chr2L:17450147-17450267 2.81e-01 120 chr3L:9698319-9698439 1.59e-01 120 chrX:6279209-6279329 8.42e-02 120 chr3L:17846265-17846385 5.22e-01 120 chr2R:19141630-19141750 2.61e-02 120 chr2L:12351051-12351171 8.63e-01 120 chr3R:8190990-8191110 8.52e-02 120 chr2L:8610953-8611073 5.86e-02 3_[+5(1.71e-05)]_109 chr3L:3765931-3766051 5.69e-01 120 chr2L:21051862-21051982 1.95e-01 11_[+5(5.94e-05)]_101 chr3L:1463809-1463929 7.32e-02 111_[+3(1.28e-05)]_1 chr2L:17784774-17784894 1.33e-01 120 chr2R:12586862-12586982 2.07e-03 60_[+3(6.48e-05)]_52 chr3R:23760550-23760670 3.86e-01 120 chr2L:2494663-2494783 1.40e-02 52_[+5(5.94e-05)]_60 chr2R:15922004-15922124 1.02e-01 120 chr2R:9971082-9971202 4.68e-02 72_[+3(6.48e-05)]_40 chr3R:30814980-30815100 5.15e-01 120 chrX:1517694-1517814 1.09e-01 89_[+4(3.98e-05)]_23 chr3L:3380470-3380590 1.53e-01 120 chr3R:24273220-24273340 1.35e-01 120 chr3L:4380382-4380502 3.66e-01 120 chrX:13822213-13822333 2.61e-01 120 chr2L:10437591-10437711 9.06e-02 120 chr3L:5922230-5922350 1.06e-01 120 chr2R:17430895-17431015 4.36e-01 120 chr2L:13878967-13879087 6.37e-02 107_[+4(3.98e-05)]_5 chr3R:23028665-23028785 5.36e-01 120 chr3L:7368424-7368544 7.48e-02 43_[+5(1.71e-05)]_69 chr3R:11948975-11949095 4.40e-02 26_[+5(3.82e-05)]_86 chr2L:6339663-6339783 9.63e-01 120 chr2R:8018911-8019031 2.31e-02 105_[+1(7.97e-06)]_7 chr3L:745588-745708 3.97e-02 74_[+5(3.82e-05)]_38 chr2L:9613377-9613497 1.43e-01 120 chrX:1880400-1880520 1.73e-01 120 chr3R:16702978-16703098 2.90e-02 99_[+2(4.86e-05)]_13 chrX:11854831-11854951 5.12e-01 120 chr2R:17869318-17869438 5.74e-01 120 chr3L:1139540-1139660 5.14e-01 120 chrX:1476968-1477088 7.78e-01 120 chr2R:24964899-24965019 4.92e-01 120 chr2L:6179105-6179225 4.73e-01 120 chr2R:19127960-19128080 5.72e-01 120 chr2R:13430023-13430143 5.16e-01 120 chrX:11548899-11549019 5.69e-01 120 chr2R:21183215-21183335 6.84e-01 120 chr3R:29089786-29089906 8.41e-01 120 chr2R:6524178-6524298 1.10e-02 120 chr2L:10756157-10756277 1.29e-03 52_[+2(3.91e-05)]_60 chr2L:6343601-6343721 1.65e-01 120 chr2L:14376924-14377044 8.42e-01 120 chrX:3068390-3068510 2.68e-05 8_[+5(1.71e-05)]_66_[+1(5.69e-05)]_\ 30 chr3R:10161302-10161422 4.06e-03 27_[+1(7.97e-06)]_85 chr2L:4838570-4838690 1.20e-02 55_[+4(2.17e-05)]_42_[+3(6.48e-05)]_\ 7 chr3R:20574832-20574952 2.20e-02 2_[+3(5.41e-05)]_110 chr2R:13482276-13482396 3.03e-01 95_[+4(3.98e-05)]_17 chr2R:22700882-22701002 1.20e-01 120 chr3L:21821901-21822021 9.08e-03 120 chr3R:21350141-21350261 1.35e-01 120 chrX:6352344-6352464 5.82e-03 19_[+3(1.28e-05)]_93 chrX:6615586-6615706 5.40e-02 105_[+5(1.71e-05)]_7 chr3R:12408347-12408467 4.97e-01 120 chr3R:11796945-11797065 1.38e-01 120 chr3R:23962996-23963116 6.99e-03 8_[+5(9.41e-05)]_95_[+2(6.69e-05)]_\ 1 chr3R:23226777-23226897 8.94e-01 120 chr3L:4825709-4825829 1.92e-01 120 chr2L:868266-868386 4.32e-01 120 chr2L:20950823-20950943 3.89e-01 120 chr3R:24870823-24870943 2.62e-01 120 chr2R:11679317-11679437 6.96e-02 120 chr3R:31053889-31054009 8.67e-04 120 chr2L:21619222-21619342 1.44e-01 120 chrX:2166200-2166320 3.39e-01 120 chr3R:28859090-28859210 4.54e-02 88_[+2(3.07e-05)]_24 chr3R:5686412-5686532 7.81e-01 120 chr3L:3090794-3090914 7.24e-01 120 chr3R:9055255-9055375 2.69e-01 120 chr2R:21049389-21049509 2.58e-01 120 chr2R:9440370-9440490 7.84e-01 120 chr3R:29556175-29556295 9.28e-01 120 chr2R:6707844-6707964 6.29e-01 120 chr3L:21536981-21537101 2.24e-01 120 chr2R:23818431-23818551 3.61e-01 120 chrX:19308102-19308222 2.27e-03 20_[+4(2.17e-05)]_19_[+3(4.11e-05)]_\ 65 chrX:17176686-17176806 9.96e-01 120 chrX:22837505-22837625 2.77e-03 61_[+3(2.58e-05)]_51 chr2R:14913202-14913322 5.03e-01 120 chr2R:7012341-7012461 4.21e-01 120 chr3R:25004912-25005032 5.44e-02 106_[+2(3.07e-05)]_6 chr3R:5758978-5759098 8.67e-02 120 chr3L:1376163-1376283 6.67e-01 120 chr3L:18840626-18840746 6.02e-02 120 chr2R:25084315-25084435 1.56e-01 120 chr3R:25880260-25880380 1.08e-02 66_[+3(1.28e-05)]_46 chr3R:4387625-4387745 1.31e-01 120 chr3L:1216532-1216652 8.77e-01 120 chr2L:901567-901687 8.34e-01 120 chr3R:26937607-26937727 3.06e-01 120 chr2L:12529387-12529507 2.71e-01 120 chr2R:11605080-11605200 1.51e-01 120 chr2L:3566714-3566834 9.93e-01 120 chr2L:5980845-5980965 3.13e-01 120 chrX:9664548-9664668 9.81e-01 120 chr2L:7307107-7307227 6.85e-02 120 chr3L:21509645-21509765 7.90e-01 120 chr3R:8801444-8801564 2.51e-01 120 chrX:16967578-16967698 5.10e-01 120 chr2R:10101694-10101814 2.48e-01 120 chrX:20257378-20257498 1.41e-01 37_[+2(3.91e-05)]_75 chr2R:7525754-7525874 2.99e-04 1_[+1(7.97e-06)]_22_[+1(3.50e-05)]_\ 3_[+3(8.04e-05)]_70 chr3L:8720174-8720294 9.05e-01 120 chrX:5082980-5083100 4.39e-02 28_[+3(1.28e-05)]_84 chr3L:5988752-5988872 2.16e-01 120 chr3R:21580207-21580327 2.27e-02 43_[+2(4.86e-05)]_69 chr3R:4319574-4319694 5.53e-01 120 chrX:16320225-16320345 8.50e-03 120 chr3L:14190147-14190267 5.55e-01 120 chr3L:8425060-8425180 6.61e-01 120 chr3R:23922999-23923119 4.37e-01 120 chrX:15076117-15076237 1.33e-02 6_[+3(5.41e-05)]_106 chrX:4010971-4011091 9.31e-01 120 chr3R:17002346-17002466 9.38e-01 120 chrX:4366280-4366400 9.94e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************