******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pum.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:2731501-2731621 1.0000 120 chr3R:15644888-15645008 1.0000 120 chr3R:26859330-26859450 1.0000 120 chr3R:29699332-29699452 1.0000 120 chr3L:1167002-1167122 1.0000 120 chr2R:11134464-11134584 1.0000 120 chrX:5889130-5889250 1.0000 120 chrX:6615591-6615711 1.0000 120 chr3L:7243911-7244031 1.0000 120 chrX:11846482-11846602 1.0000 120 chr2R:20906665-20906785 1.0000 120 chrX:16105828-16105948 1.0000 120 chrX:16458707-16458827 1.0000 120 chr2R:11809465-11809585 1.0000 120 chr3L:13845359-13845479 1.0000 120 chrX:12221674-12221794 1.0000 120 chrX:8677600-8677720 1.0000 120 chr2R:20091256-20091376 1.0000 120 chr2L:10488677-10488797 1.0000 120 chr2L:7619373-7619493 1.0000 120 chr2L:14619766-14619886 1.0000 120 chr2R:13224882-13225002 1.0000 120 chr3R:16957909-16958029 1.0000 120 chr2L:14123714-14123834 1.0000 120 chr2L:19884579-19884699 1.0000 120 chr2L:7149095-7149215 1.0000 120 chr3R:9344904-9345024 1.0000 120 chr2R:16091907-16092027 1.0000 120 chrX:16650544-16650664 1.0000 120 chrX:7703110-7703230 1.0000 120 chr2R:19874689-19874809 1.0000 120 chrX:5516186-5516306 1.0000 120 chr2L:19233468-19233588 1.0000 120 chrX:15591872-15591992 1.0000 120 chr2R:20590721-20590841 1.0000 120 chr3L:7634846-7634966 1.0000 120 chr3L:1424613-1424733 1.0000 120 chr2R:14783012-14783132 1.0000 120 chr3L:5819429-5819549 1.0000 120 chrX:14738594-14738714 1.0000 120 chr2L:7617000-7617120 1.0000 120 chr3R:26436709-26436829 1.0000 120 chr3R:12712602-12712722 1.0000 120 chr3L:3875122-3875242 1.0000 120 chr3R:21214878-21214998 1.0000 120 chr2R:13617999-13618119 1.0000 120 chr2R:15835435-15835555 1.0000 120 chr2L:9448873-9448993 1.0000 120 chr2L:3600984-3601104 1.0000 120 chr3R:15292452-15292572 1.0000 120 chr3L:9864303-9864423 1.0000 120 chr3R:27440716-27440836 1.0000 120 chr3R:12591807-12591927 1.0000 120 chr2R:21909973-21910093 1.0000 120 chr3R:5065121-5065241 1.0000 120 chr3L:18357759-18357879 1.0000 120 chr3L:9898609-9898729 1.0000 120 chrX:13630453-13630573 1.0000 120 chr2L:9996826-9996946 1.0000 120 chrX:8417109-8417229 1.0000 120 chr2L:21156207-21156327 1.0000 120 chr3R:4846899-4847019 1.0000 120 chr3L:22277374-22277494 1.0000 120 chr2R:22379333-22379453 1.0000 120 chrX:771844-771964 1.0000 120 chrX:18837194-18837314 1.0000 120 chr3R:21188135-21188255 1.0000 120 chrX:19884408-19884528 1.0000 120 chrX:17510636-17510756 1.0000 120 chrX:12699250-12699370 1.0000 120 chr3R:6723970-6724090 1.0000 120 chrX:7975981-7976101 1.0000 120 chr3L:16768426-16768546 1.0000 120 chr2L:15741555-15741675 1.0000 120 chr3R:25489813-25489933 1.0000 120 chr3R:31805404-31805524 1.0000 120 chr3L:94204-94324 1.0000 120 chr3L:9468473-9468593 1.0000 120 chr3L:16486532-16486652 1.0000 120 chr2R:7054401-7054521 1.0000 120 chrX:1880397-1880517 1.0000 120 chrX:18405099-18405219 1.0000 120 chrX:4581872-4581992 1.0000 120 chr3L:9614078-9614198 1.0000 120 chr3R:23387076-23387196 1.0000 120 chr3R:5861557-5861677 1.0000 120 chr3R:31687963-31688083 1.0000 120 chr2L:8746354-8746474 1.0000 120 chr3R:4775438-4775558 1.0000 120 chrX:15739091-15739211 1.0000 120 chrX:18774887-18775007 1.0000 120 chr3L:1568951-1569071 1.0000 120 chrX:5639232-5639352 1.0000 120 chr3R:8469836-8469956 1.0000 120 chrX:15653658-15653778 1.0000 120 chr2R:22384471-22384591 1.0000 120 chr3R:26888435-26888555 1.0000 120 chr2L:3587464-3587584 1.0000 120 chrX:4322751-4322871 1.0000 120 chrX:18239428-18239548 1.0000 120 chr2L:3598607-3598727 1.0000 120 chr3L:16760382-16760502 1.0000 120 chr2R:22450489-22450609 1.0000 120 chr3R:16718090-16718210 1.0000 120 chrX:10363000-10363120 1.0000 120 chr3L:8440920-8441040 1.0000 120 chr3R:8563974-8564094 1.0000 120 chrX:4498358-4498478 1.0000 120 chr3R:14657213-14657333 1.0000 120 chrX:16103666-16103786 1.0000 120 chr3R:21850238-21850358 1.0000 120 chr2R:18277146-18277266 1.0000 120 chr3R:26235163-26235283 1.0000 120 chrX:5968241-5968361 1.0000 120 chr2R:12274359-12274479 1.0000 120 chr2R:24893770-24893890 1.0000 120 chr3R:28857441-28857561 1.0000 120 chr3R:18366422-18366542 1.0000 120 chrX:17830320-17830440 1.0000 120 chr3R:18663611-18663731 1.0000 120 chrX:6973428-6973548 1.0000 120 chr3R:19491126-19491246 1.0000 120 chr3L:1216562-1216682 1.0000 120 chrX:14622361-14622481 1.0000 120 chr2L:21658573-21658693 1.0000 120 chr3R:11735434-11735554 1.0000 120 chr3L:13964689-13964809 1.0000 120 chrX:17176719-17176839 1.0000 120 chr2L:19059040-19059160 1.0000 120 chrX:13128084-13128204 1.0000 120 chr3R:12997682-12997802 1.0000 120 chr2R:12437149-12437269 1.0000 120 chr3L:1702619-1702739 1.0000 120 chr3L:4353896-4354016 1.0000 120 chr3L:20630788-20630908 1.0000 120 chr3L:11334157-11334277 1.0000 120 chrX:19665970-19666090 1.0000 120 chrX:6037371-6037491 1.0000 120 chr2L:14024836-14024956 1.0000 120 chrX:14602682-14602802 1.0000 120 chr3R:22039627-22039747 1.0000 120 chr3R:11368838-11368958 1.0000 120 chrX:7571383-7571503 1.0000 120 chr2R:23176733-23176853 1.0000 120 chrX:9193780-9193900 1.0000 120 chr3R:28599625-28599745 1.0000 120 chr2L:5491343-5491463 1.0000 120 chrX:20631270-20631390 1.0000 120 chr3R:16991951-16992071 1.0000 120 chr2L:12351000-12351120 1.0000 120 chr3L:9028186-9028306 1.0000 120 chrX:13845873-13845993 1.0000 120 chr2R:21535558-21535678 1.0000 120 chrX:6110043-6110163 1.0000 120 chr3R:16948843-16948963 1.0000 120 chr3L:8751405-8751525 1.0000 120 chr2L:15751110-15751230 1.0000 120 chr4:406956-407076 1.0000 120 chr2R:11095293-11095413 1.0000 120 chr2R:18994137-18994257 1.0000 120 chrX:5671808-5671928 1.0000 120 chrX:7015109-7015229 1.0000 120 chr3R:27239085-27239205 1.0000 120 chrX:10184860-10184980 1.0000 120 chr3L:15321066-15321186 1.0000 120 chr3L:199234-199354 1.0000 120 chrX:7162660-7162780 1.0000 120 chrX:2318512-2318632 1.0000 120 chr3R:16748713-16748833 1.0000 120 chr2L:901448-901568 1.0000 120 chrX:1859015-1859135 1.0000 120 chrX:6375816-6375936 1.0000 120 chr3L:9864517-9864637 1.0000 120 chrX:19308078-19308198 1.0000 120 chr2R:9693550-9693670 1.0000 120 chrX:4540704-4540824 1.0000 120 chr3R:8033160-8033280 1.0000 120 chrX:8720326-8720446 1.0000 120 chr2R:10066620-10066740 1.0000 120 chr2L:15254315-15254435 1.0000 120 chr3R:9055240-9055360 1.0000 120 chr2L:3775971-3776091 1.0000 120 chrX:19008954-19009074 1.0000 120 chrX:3068446-3068566 1.0000 120 chrX:18899946-18900066 1.0000 120 chr2R:20601170-20601290 1.0000 120 chr3R:23679911-23680031 1.0000 120 chr2R:9681937-9682057 1.0000 120 chr3L:13922454-13922574 1.0000 120 chr2L:1428506-1428626 1.0000 120 chr2L:9224565-9224685 1.0000 120 chr2R:7699132-7699252 1.0000 120 chr3L:1578655-1578775 1.0000 120 chr2R:21712042-21712162 1.0000 120 chr3L:15235325-15235445 1.0000 120 chr3L:10745673-10745793 1.0000 120 chr3L:10845152-10845272 1.0000 120 chr3R:8744363-8744483 1.0000 120 chr2R:21183183-21183303 1.0000 120 chrX:12463094-12463214 1.0000 120 chr2L:18688821-18688941 1.0000 120 chr3R:12426059-12426179 1.0000 120 chr2L:18921381-18921501 1.0000 120 chr2L:8573051-8573171 1.0000 120 chr3R:5076311-5076431 1.0000 120 chr2L:21260999-21261119 1.0000 120 chrX:3690691-3690811 1.0000 120 chr2L:4394008-4394128 1.0000 120 chr2R:23092253-23092373 1.0000 120 chr2R:9544833-9544953 1.0000 120 chr3R:8171680-8171800 1.0000 120 chrX:20257363-20257483 1.0000 120 chr2R:13054985-13055105 1.0000 120 chr2R:9971167-9971287 1.0000 120 chr2L:14245642-14245762 1.0000 120 chr3R:31793809-31793929 1.0000 120 chrX:1370156-1370276 1.0000 120 chr2L:7871914-7872034 1.0000 120 chr3R:25054622-25054742 1.0000 120 chrX:3968835-3968955 1.0000 120 chr3L:3197619-3197739 1.0000 120 chr2L:21163517-21163637 1.0000 120 chrX:16967566-16967686 1.0000 120 chrX:9137273-9137393 1.0000 120 chr3L:16806198-16806318 1.0000 120 chrX:17751874-17751994 1.0000 120 chr2L:19867100-19867220 1.0000 120 chr2R:9388593-9388713 1.0000 120 chrX:19505695-19505815 1.0000 120 chr2L:3566693-3566813 1.0000 120 chr2R:8951590-8951710 1.0000 120 chr2L:20950777-20950897 1.0000 120 chr3L:14977918-14978038 1.0000 120 chrX:11548832-11548952 1.0000 120 chrX:1052839-1052959 1.0000 120 chr2L:3852280-3852400 1.0000 120 chr2L:1473520-1473640 1.0000 120 chr2R:8914039-8914159 1.0000 120 chr2R:19669849-19669969 1.0000 120 chr2L:18900009-18900129 1.0000 120 chrX:5883513-5883633 1.0000 120 chr3R:22023324-22023444 1.0000 120 chr3R:21493773-21493893 1.0000 120 chrX:5285953-5286073 1.0000 120 chr3L:1350599-1350719 1.0000 120 chr3L:11534122-11534242 1.0000 120 chr3R:30304895-30305015 1.0000 120 chrX:5972161-5972281 1.0000 120 chr3R:5636900-5637020 1.0000 120 chr3L:8399197-8399317 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pum/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pum.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.18 G 0.179 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.18 G 0.179 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GRKGGCGC MEME-1 width = 8 sites = 18 llr = 183 E-value = 2.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4:::::: pos.-specific C 1:111a:a probability G 96498:a: matrix T :16:1::: bits 2.5 *** 2.2 * *** 2.0 * * *** 1.7 * * *** Relative 1.5 * ***** Entropy 1.2 * ***** (14.6 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16967566-16967686 66 1.07e-06 GCACTCGGCA GGGGGCGC CACAACGACG chrX:6110043-6110163 59 2.98e-06 GCGGACGCCA GGTGGCGC CACACATGTA chr2R:21535558-21535678 45 2.98e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chrX:18239428-18239548 112 2.98e-06 CAAGCCGCTA GGTGGCGC T chrX:17751874-17751994 53 4.88e-06 TTCAAGAGTA GAGGGCGC CGCTTACTTT chr4:406956-407076 79 4.88e-06 ATTTCCCACA GAGGGCGC CTGTAGTGGT chr3R:16748713-16748833 19 8.30e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:12274359-12274479 48 8.30e-06 ATTGCCGAAA GATGGCGC CCATGGCGCA chr2R:20906665-20906785 89 8.30e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chrX:19665970-19666090 54 1.04e-05 CTCGCGGGCA GGGGCCGC GTTTTTTAAT chr3L:199234-199354 41 1.15e-05 GCTCGTTTAA GGGCGCGC TTACTATGCG chr3L:94204-94324 103 1.15e-05 ATTTTAATGT GGGCGCGC ATTTTGTAGT chrX:15653658-15653778 97 2.18e-05 AACAGCCACA GGTGTCGC TACTGAGCAA chr2R:11134464-11134584 93 2.18e-05 TTCGCCGCTA GGTGTCGC AACAAATGTA chr2L:901448-901568 47 2.75e-05 CAGATGTCGG GACGGCGC GAACGCCATT chrX:9193780-9193900 101 2.75e-05 CAACTTTAGC GAGGCCGC ACTGCCTTAA chr3R:9055240-9055360 44 2.94e-05 TTCACTCAAA CGTGGCGC GCTGGGTATC chr2R:20601170-20601290 38 3.82e-05 CACGTTCTTT GTTGGCGC CTAAAAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16967566-16967686 1.1e-06 65_[+1]_47 chrX:6110043-6110163 3e-06 58_[+1]_54 chr2R:21535558-21535678 3e-06 44_[+1]_68 chrX:18239428-18239548 3e-06 111_[+1]_1 chrX:17751874-17751994 4.9e-06 52_[+1]_60 chr4:406956-407076 4.9e-06 78_[+1]_34 chr3R:16748713-16748833 8.3e-06 18_[+1]_94 chr2R:12274359-12274479 8.3e-06 47_[+1]_65 chr2R:20906665-20906785 8.3e-06 88_[+1]_24 chrX:19665970-19666090 1e-05 53_[+1]_59 chr3L:199234-199354 1.2e-05 40_[+1]_72 chr3L:94204-94324 1.2e-05 102_[+1]_10 chrX:15653658-15653778 2.2e-05 96_[+1]_16 chr2R:11134464-11134584 2.2e-05 92_[+1]_20 chr2L:901448-901568 2.8e-05 46_[+1]_66 chrX:9193780-9193900 2.8e-05 100_[+1]_12 chr3R:9055240-9055360 2.9e-05 43_[+1]_69 chr2R:20601170-20601290 3.8e-05 37_[+1]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRKGGCGC width=8 seqs=18 chrX:16967566-16967686 ( 66) GGGGGCGC 1 chrX:6110043-6110163 ( 59) GGTGGCGC 1 chr2R:21535558-21535678 ( 45) GGTGGCGC 1 chrX:18239428-18239548 ( 112) GGTGGCGC 1 chrX:17751874-17751994 ( 53) GAGGGCGC 1 chr4:406956-407076 ( 79) GAGGGCGC 1 chr3R:16748713-16748833 ( 19) GATGGCGC 1 chr2R:12274359-12274479 ( 48) GATGGCGC 1 chr2R:20906665-20906785 ( 89) GATGGCGC 1 chrX:19665970-19666090 ( 54) GGGGCCGC 1 chr3L:199234-199354 ( 41) GGGCGCGC 1 chr3L:94204-94324 ( 103) GGGCGCGC 1 chrX:15653658-15653778 ( 97) GGTGTCGC 1 chr2R:11134464-11134584 ( 93) GGTGTCGC 1 chr2L:901448-901568 ( 47) GACGGCGC 1 chrX:9193780-9193900 ( 101) GAGGCCGC 1 chr3R:9055240-9055360 ( 44) CGTGGCGC 1 chr2R:20601170-20601290 ( 38) GTTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 2.7e-002 -1081 -169 240 -1081 28 -1081 163 -253 -1081 -169 112 79 -1081 -69 231 -1081 -1081 -69 212 -153 -1081 248 -1081 -1081 -1081 -1081 248 -1081 -1081 248 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.7e-002 0.000000 0.055556 0.944444 0.000000 0.388889 0.000000 0.555556 0.055556 0.000000 0.055556 0.388889 0.555556 0.000000 0.111111 0.888889 0.000000 0.000000 0.111111 0.777778 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRKGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- G[GA][TG]GGCGC -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CASTGBRN MEME-2 width = 8 sites = 65 llr = 495 E-value = 4.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::62 pos.-specific C a:31:414 probability G ::7:a232 matrix T :::9:4:2 bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** * Relative 1.5 *** * Entropy 1.2 ***** (11.0 bits) 1.0 ***** 0.7 ***** * 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CAGTGTAC consensus C CGG sequence G A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8171680-8171800 96 9.58e-06 TTTTTTTTTC CAGTGCAC CTCCAACAGT chrX:13128084-13128204 92 9.58e-06 GGGgtgagtg cagtgcac tgcttgctgg chr3R:15644888-15645008 103 9.58e-06 CTATTTCTCT CAGTGCAC AGATGGACAG chr3R:31687963-31688083 93 1.57e-05 TTTTATTTTC CAGTGTGC ATTGTGCGCT chr3R:26436709-26436829 112 1.57e-05 TATTTTCGCT CAGTGTGC G chr3R:26859330-26859450 3 1.57e-05 CG CAGTGTGC ACTGAGAGAA chr2L:5491343-5491463 10 3.69e-05 CGGAAAATA CACTGCGC GTAAATGCAG chr3R:21850238-21850358 13 3.69e-05 GTAATTAGAA CAGTGCGG ACTCGGCCAA chr3R:31805404-31805524 55 3.69e-05 TAATAGGCAA CAGTGTAC ACTTTTTCAA chr3R:25489813-25489933 56 3.69e-05 CTCAAAGATA CACTGCGC GAATAGAGAC chr2L:21156207-21156327 31 3.69e-05 TCTTCGTGCG CACTGCGC AGTGTGGCAA chrX:16458707-16458827 41 3.69e-05 TGTGCAAGAG CAGTGCGG AGCGCCATCT chrX:1052839-1052959 103 5.53e-05 TCATTTCTCT CAGTGCAG TCGCACCATA chrX:14622361-14622481 110 5.53e-05 TCATTTCTCA CAGTGCAG TCT chrX:4498358-4498478 32 5.53e-05 TTACCCCTTC CACTGCAC TGAGCAAAAT chrX:771844-771964 14 5.53e-05 AACCAACTCT CAGTGGAC TAAACCTATT chr3R:12712602-12712722 58 5.53e-05 ACCTTGTTCA CACTGCAC GCGCCTTTCT chr3L:15235325-15235445 70 6.76e-05 CTATTCGGCC CACTGTGC ACTGTGGGCC chrX:10184860-10184980 71 6.76e-05 CATTTCGGCC CACTGTGC AATGACGATA chr3R:27239085-27239205 111 6.76e-05 AGGGTGGCAA CACTGTGC CC chr3R:16948843-16948963 11 6.76e-05 GCAGCACATG CACTGTGC AAAATGGATA chr3L:1350599-1350719 30 1.12e-04 TCGGTATTTG CAGTGCGA TACCGAGTGA chr3R:21493773-21493893 69 1.12e-04 GCATTTCTCA CAGTGTAG TTTCGGCCTC chr3L:1578655-1578775 10 1.12e-04 ACCAGTGAC CACTGTAC ATGAGGCACA chr2R:11095293-11095413 101 1.12e-04 GCATTTCTCT CAGTGTAG TCAATGAAGT chrX:14602682-14602802 99 1.12e-04 CTGAACATTT CAGTGGGG AGTCAACTGT chrX:13630453-13630573 91 1.12e-04 TTGTTCTGAA CACTGTAC TTGTTTTTTT chr2L:21260999-21261119 96 1.56e-04 CTTATGAAGG CAGTGGAG TAGCACAGAA chr2L:15254315-15254435 57 1.56e-04 CAAACGCAAT CACTGcag aaacagaaaa chr2L:15751110-15751230 39 1.56e-04 attactcata cagtggag ggtatactag chr2R:19874689-19874809 74 1.56e-04 CAATTTCTTC CAGTGCAT CTTGTTATTG chr2R:20906665-20906785 97 1.56e-04 TAGATGGCGC CAGTGCAA CATTAAGGAC chrX:5889130-5889250 106 1.56e-04 AATTATTTTC CAGTGCAT TCCATCC chrX:13845873-13845993 10 1.84e-04 GCCAGCTCG CAGTGTGA CCAGAGCACG chr3L:1568951-1569071 109 1.84e-04 GCGTGATGCA CAGTGTGA ACAC chr3L:16806198-16806318 92 2.70e-04 TATATTTTCT CAGTGTAA TAAAGGACAC chrX:1370156-1370276 96 2.70e-04 ACTTCTTTCA CAGTGTAT TTAACTGCTC chr2R:9693550-9693670 88 2.70e-04 AAAGAATAGG CAGTGGGT TTAAAGCCCA chrX:6375816-6375936 107 2.70e-04 CTTTTTTTTG CAGTGTAA TTTTCG chrX:1859015-1859135 10 2.70e-04 ATCCATGCA CAGTGGGT ACTACTTGCA chr2R:12274359-12274479 73 2.70e-04 GCACTAAGGT CAGCGCGC CACCTGGCGA chrX:5639232-5639352 106 2.70e-04 ATTAAATTTT CAGTGTAA CGCCACG chr3L:22277374-22277494 107 2.70e-04 AGTGTTCTCG CAGTGTAT CACTCT chr2L:19233468-19233588 98 2.70e-04 TATTTTCATG CAGTGTAT GGATAAACAC chrX:16650544-16650664 4 2.70e-04 GCA CAGTGGGT CTCACATGTG chr2L:21163517-21163637 84 3.33e-04 GCATTGGCAG CACTGCCC ACAATTCAGC chr2L:9224565-9224685 98 3.33e-04 TTGGTACTGC CACTGCCC TGCTGCCCCT chr3R:16748713-16748833 35 3.33e-04 GCATGCAACT CAGTGCCG CCATCTGACG chr3R:28599625-28599745 90 3.33e-04 CATAGATTTT CAGTGGAA ACAAGTGGAA chr2L:21658573-21658693 55 3.33e-04 AAAATTTGTT CAGTGGAT CGGCGTTGAC chr2L:8746354-8746474 12 3.33e-04 GCTTCTGCTA CACTGCAA TTAAAACTCT chr3L:9614078-9614198 48 3.33e-04 CTATTGCAAG CAGTGGAT GCAAGCAGTA chr2L:1473520-1473640 17 4.34e-04 AACAACGGAA CAGCGGGC TCAGCAGGAG chr2L:14245642-14245762 107 4.34e-04 AGATTTTTCT CACTGTAT CTCTAT chrX:5671808-5671928 12 4.34e-04 AGAGATGGAC CACTGTAA CAGCAGCCTT chr2R:18994137-18994257 39 4.34e-04 ATTGCCAAAG CACTGTAA GGATTATGTC chr2R:7054401-7054521 110 4.34e-04 GTGTTTCTCT CAGTGTCG GGC chrX:17510636-17510756 56 4.34e-04 GTGAATAATA CACTGTAT TTGTTGTAAA chr3L:9898609-9898729 102 4.34e-04 CAAAACAATC CAGCGCGG CTTAAAACAA chr3R:15292452-15292572 81 4.34e-04 GAGCAAGCTT CACTGTAT TTTTCCGTTC chrX:3968835-3968955 35 4.89e-04 GCTGAGCCAT CAGTGCCA AAATACCCAA chr3R:23679911-23680031 54 4.89e-04 TCCCGCCCAG CAGTGGCG CCATCTATGA chrX:6110043-6110163 47 4.89e-04 TGGCTTCAGC CAGCGGAC GCCAGGTGGC chrX:6037371-6037491 80 4.89e-04 GAACTGGTCA CACCGCAC AGCGGGCCAA chr3R:5861557-5861677 30 4.89e-04 CGTCCTTCGA CACTGGAA CTATAAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8171680-8171800 9.6e-06 95_[+2]_17 chrX:13128084-13128204 9.6e-06 91_[+2]_21 chr3R:15644888-15645008 9.6e-06 102_[+2]_10 chr3R:31687963-31688083 1.6e-05 92_[+2]_20 chr3R:26436709-26436829 1.6e-05 111_[+2]_1 chr3R:26859330-26859450 1.6e-05 2_[+2]_110 chr2L:5491343-5491463 3.7e-05 9_[+2]_103 chr3R:21850238-21850358 3.7e-05 12_[+2]_100 chr3R:31805404-31805524 3.7e-05 54_[+2]_58 chr3R:25489813-25489933 3.7e-05 55_[+2]_57 chr2L:21156207-21156327 3.7e-05 30_[+2]_82 chrX:16458707-16458827 3.7e-05 40_[+2]_72 chrX:1052839-1052959 5.5e-05 102_[+2]_10 chrX:14622361-14622481 5.5e-05 109_[+2]_3 chrX:4498358-4498478 5.5e-05 31_[+2]_81 chrX:771844-771964 5.5e-05 13_[+2]_99 chr3R:12712602-12712722 5.5e-05 57_[+2]_55 chr3L:15235325-15235445 6.8e-05 69_[+2]_43 chrX:10184860-10184980 6.8e-05 70_[+2]_42 chr3R:27239085-27239205 6.8e-05 110_[+2]_2 chr3R:16948843-16948963 6.8e-05 10_[+2]_102 chr3L:1350599-1350719 0.00011 29_[+2]_83 chr3R:21493773-21493893 0.00011 68_[+2]_44 chr3L:1578655-1578775 0.00011 9_[+2]_103 chr2R:11095293-11095413 0.00011 100_[+2]_12 chrX:14602682-14602802 0.00011 98_[+2]_14 chrX:13630453-13630573 0.00011 90_[+2]_22 chr2L:21260999-21261119 0.00016 95_[+2]_17 chr2L:15254315-15254435 0.00016 56_[+2]_56 chr2L:15751110-15751230 0.00016 38_[+2]_74 chr2R:19874689-19874809 0.00016 73_[+2]_39 chr2R:20906665-20906785 0.00016 96_[+2]_16 chrX:5889130-5889250 0.00016 105_[+2]_7 chrX:13845873-13845993 0.00018 9_[+2]_103 chr3L:1568951-1569071 0.00018 108_[+2]_4 chr3L:16806198-16806318 0.00027 91_[+2]_21 chrX:1370156-1370276 0.00027 95_[+2]_17 chr2R:9693550-9693670 0.00027 87_[+2]_25 chrX:6375816-6375936 0.00027 106_[+2]_6 chrX:1859015-1859135 0.00027 9_[+2]_103 chr2R:12274359-12274479 0.00027 72_[+2]_40 chrX:5639232-5639352 0.00027 105_[+2]_7 chr3L:22277374-22277494 0.00027 106_[+2]_6 chr2L:19233468-19233588 0.00027 97_[+2]_15 chrX:16650544-16650664 0.00027 3_[+2]_109 chr2L:21163517-21163637 0.00033 83_[+2]_29 chr2L:9224565-9224685 0.00033 97_[+2]_15 chr3R:16748713-16748833 0.00033 34_[+2]_78 chr3R:28599625-28599745 0.00033 89_[+2]_23 chr2L:21658573-21658693 0.00033 54_[+2]_58 chr2L:8746354-8746474 0.00033 11_[+2]_101 chr3L:9614078-9614198 0.00033 47_[+2]_65 chr2L:1473520-1473640 0.00043 16_[+2]_96 chr2L:14245642-14245762 0.00043 106_[+2]_6 chrX:5671808-5671928 0.00043 11_[+2]_101 chr2R:18994137-18994257 0.00043 38_[+2]_74 chr2R:7054401-7054521 0.00043 109_[+2]_3 chrX:17510636-17510756 0.00043 55_[+2]_57 chr3L:9898609-9898729 0.00043 101_[+2]_11 chr3R:15292452-15292572 0.00043 80_[+2]_32 chrX:3968835-3968955 0.00049 34_[+2]_78 chr3R:23679911-23680031 0.00049 53_[+2]_59 chrX:6110043-6110163 0.00049 46_[+2]_66 chrX:6037371-6037491 0.00049 79_[+2]_33 chr3R:5861557-5861677 0.00049 29_[+2]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGBRN width=8 seqs=65 chr3R:8171680-8171800 ( 96) CAGTGCAC 1 chrX:13128084-13128204 ( 92) CAGTGCAC 1 chr3R:15644888-15645008 ( 103) CAGTGCAC 1 chr3R:31687963-31688083 ( 93) CAGTGTGC 1 chr3R:26436709-26436829 ( 112) CAGTGTGC 1 chr3R:26859330-26859450 ( 3) CAGTGTGC 1 chr2L:5491343-5491463 ( 10) CACTGCGC 1 chr3R:21850238-21850358 ( 13) CAGTGCGG 1 chr3R:31805404-31805524 ( 55) CAGTGTAC 1 chr3R:25489813-25489933 ( 56) CACTGCGC 1 chr2L:21156207-21156327 ( 31) CACTGCGC 1 chrX:16458707-16458827 ( 41) CAGTGCGG 1 chrX:1052839-1052959 ( 103) CAGTGCAG 1 chrX:14622361-14622481 ( 110) CAGTGCAG 1 chrX:4498358-4498478 ( 32) CACTGCAC 1 chrX:771844-771964 ( 14) CAGTGGAC 1 chr3R:12712602-12712722 ( 58) CACTGCAC 1 chr3L:15235325-15235445 ( 70) CACTGTGC 1 chrX:10184860-10184980 ( 71) CACTGTGC 1 chr3R:27239085-27239205 ( 111) CACTGTGC 1 chr3R:16948843-16948963 ( 11) CACTGTGC 1 chr3L:1350599-1350719 ( 30) CAGTGCGA 1 chr3R:21493773-21493893 ( 69) CAGTGTAG 1 chr3L:1578655-1578775 ( 10) CACTGTAC 1 chr2R:11095293-11095413 ( 101) CAGTGTAG 1 chrX:14602682-14602802 ( 99) CAGTGGGG 1 chrX:13630453-13630573 ( 91) CACTGTAC 1 chr2L:21260999-21261119 ( 96) CAGTGGAG 1 chr2L:15254315-15254435 ( 57) CACTGCAG 1 chr2L:15751110-15751230 ( 39) CAGTGGAG 1 chr2R:19874689-19874809 ( 74) CAGTGCAT 1 chr2R:20906665-20906785 ( 97) CAGTGCAA 1 chrX:5889130-5889250 ( 106) CAGTGCAT 1 chrX:13845873-13845993 ( 10) CAGTGTGA 1 chr3L:1568951-1569071 ( 109) CAGTGTGA 1 chr3L:16806198-16806318 ( 92) CAGTGTAA 1 chrX:1370156-1370276 ( 96) CAGTGTAT 1 chr2R:9693550-9693670 ( 88) CAGTGGGT 1 chrX:6375816-6375936 ( 107) CAGTGTAA 1 chrX:1859015-1859135 ( 10) CAGTGGGT 1 chr2R:12274359-12274479 ( 73) CAGCGCGC 1 chrX:5639232-5639352 ( 106) CAGTGTAA 1 chr3L:22277374-22277494 ( 107) CAGTGTAT 1 chr2L:19233468-19233588 ( 98) CAGTGTAT 1 chrX:16650544-16650664 ( 4) CAGTGGGT 1 chr2L:21163517-21163637 ( 84) CACTGCCC 1 chr2L:9224565-9224685 ( 98) CACTGCCC 1 chr3R:16748713-16748833 ( 35) CAGTGCCG 1 chr3R:28599625-28599745 ( 90) CAGTGGAA 1 chr2L:21658573-21658693 ( 55) CAGTGGAT 1 chr2L:8746354-8746474 ( 12) CACTGCAA 1 chr3L:9614078-9614198 ( 48) CAGTGGAT 1 chr2L:1473520-1473640 ( 17) CAGCGGGC 1 chr2L:14245642-14245762 ( 107) CACTGTAT 1 chrX:5671808-5671928 ( 12) CACTGTAA 1 chr2R:18994137-18994257 ( 39) CACTGTAA 1 chr2R:7054401-7054521 ( 110) CAGTGTCG 1 chrX:17510636-17510756 ( 56) CACTGTAT 1 chr3L:9898609-9898729 ( 102) CAGCGCGG 1 chr3R:15292452-15292572 ( 81) CACTGTAT 1 chrX:3968835-3968955 ( 35) CAGTGCCA 1 chr3R:23679911-23680031 ( 54) CAGTGGCG 1 chrX:6110043-6110163 ( 47) CAGCGGAC 1 chrX:6037371-6037491 ( 80) CACCGCAC 1 chr3R:5861557-5861677 ( 30) CACTGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0953 E= 4.9e-001 -1267 248 -1267 -1267 164 -1267 -1267 -1267 -1267 91 189 -1267 -1267 -122 -1267 152 -1267 -1267 248 -1267 -1267 110 27 32 83 -96 92 -1267 -68 110 27 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 4.9e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.338462 0.661538 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.384615 0.215385 0.400000 0.569231 0.092308 0.338462 0.000000 0.200000 0.384615 0.215385 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGBRN MEME-2 regular expression -------------------------------------------------------------------------------- CA[GC]TG[TCG][AG][CGAT] -------------------------------------------------------------------------------- Time 13.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCDGCAC MEME-3 width = 8 sites = 16 llr = 159 E-value = 4.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3::71 pos.-specific C :4a:1a:9 probability G a6:49::: matrix T :::3::3: bits 2.5 * * * 2.2 * * ** 2.0 * * ** * 1.7 * * ** * Relative 1.5 *** ** * Entropy 1.2 *** ** * (14.3 bits) 1.0 *** ** * 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCAC consensus C A T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5883513-5883633 74 1.92e-06 TCCGCCAGAT GGCGGCAC AGCATGAAAT chr3L:1702619-1702739 44 3.84e-06 CTTGTTGCTT GCCGGCAC ACTGAGAGAA chr2R:8914039-8914159 59 1.26e-05 ATCTCGATGT GGCAGCAC GCTCGGTGTT chrX:20257363-20257483 55 1.26e-05 CTAATTAAGC GGCAGCAC TGATTAGCTG chrX:19008954-19009074 37 1.26e-05 CGCTTTTATA GGCAGCAC GAAGGAACTT chrX:14602682-14602802 38 1.26e-05 CTGCGACACA GGCTGCAC TCGCTATGCG chr3R:11735434-11735554 90 1.26e-05 TGGGACGGGC GGCTGCAC AATGACGGCG chr2R:12274359-12274479 92 1.26e-05 ACCTGGCGAC GGCGGCTC GCACCGGCTG chr2L:9224565-9224685 42 2.15e-05 aaaaaTCTCA GCCGGCTC TGTTTGTTTG chrX:18774887-18775007 113 2.15e-05 TTTCCGAAAT GCCTGCAC chrX:15739091-15739211 111 2.15e-05 GCGGCCAACC GCCTGCAC TG chrX:3968835-3968955 109 2.83e-05 GTGCCCGTCT GGCAGCTC CAAA chrX:13845873-13845993 1 3.53e-05 . GCCAGCTC GCAGTGTGAC chrX:18405099-18405219 109 3.53e-05 TGATCGCGAT GCCTGCTC AGTG chrX:16967566-16967686 31 3.72e-05 TGGCGCTTGA GGCGCCAC TCCTTGAGCG chrX:18239428-18239548 45 4.25e-05 CATACTTTAG GGCGGCAA GTGCTGGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5883513-5883633 1.9e-06 73_[+3]_39 chr3L:1702619-1702739 3.8e-06 43_[+3]_69 chr2R:8914039-8914159 1.3e-05 58_[+3]_54 chrX:20257363-20257483 1.3e-05 54_[+3]_58 chrX:19008954-19009074 1.3e-05 36_[+3]_76 chrX:14602682-14602802 1.3e-05 37_[+3]_75 chr3R:11735434-11735554 1.3e-05 89_[+3]_23 chr2R:12274359-12274479 1.3e-05 91_[+3]_21 chr2L:9224565-9224685 2.1e-05 41_[+3]_71 chrX:18774887-18775007 2.1e-05 112_[+3] chrX:15739091-15739211 2.1e-05 110_[+3]_2 chrX:3968835-3968955 2.8e-05 108_[+3]_4 chrX:13845873-13845993 3.5e-05 [+3]_112 chrX:18405099-18405219 3.5e-05 108_[+3]_4 chrX:16967566-16967686 3.7e-05 30_[+3]_82 chrX:18239428-18239548 4.3e-05 44_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCDGCAC width=8 seqs=16 chrX:5883513-5883633 ( 74) GGCGGCAC 1 chr3L:1702619-1702739 ( 44) GCCGGCAC 1 chr2R:8914039-8914159 ( 59) GGCAGCAC 1 chrX:20257363-20257483 ( 55) GGCAGCAC 1 chrX:19008954-19009074 ( 37) GGCAGCAC 1 chrX:14602682-14602802 ( 38) GGCTGCAC 1 chr3R:11735434-11735554 ( 90) GGCTGCAC 1 chr2R:12274359-12274479 ( 92) GGCGGCTC 1 chr2L:9224565-9224685 ( 42) GCCGGCTC 1 chrX:18774887-18775007 ( 113) GCCTGCAC 1 chrX:15739091-15739211 ( 111) GCCTGCAC 1 chrX:3968835-3968955 ( 109) GGCAGCTC 1 chrX:13845873-13845993 ( 1) GCCAGCTC 1 chrX:18405099-18405219 ( 109) GCCTGCTC 1 chrX:16967566-16967686 ( 31) GGCGCCAC 1 chrX:18239428-18239548 ( 45) GGCGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 4.0e+002 -1064 -1064 248 -1064 -1064 106 180 -1064 -1064 248 -1064 -1064 -4 -1064 107 -4 -1064 -152 239 -1064 -1064 248 -1064 -1064 110 -1064 -1064 -4 -235 238 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.000000 0.375000 0.312500 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.687500 0.000000 0.000000 0.312500 0.062500 0.937500 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCDGCAC MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]C[GAT]GC[AT]C -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCGGYG MEME-4 width = 8 sites = 7 llr = 75 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:::::: pos.-specific C 9::91:6: probability G 11a19a:a matrix T ::::::4: bits 2.5 * * * 2.2 * * * 2.0 * **** * 1.7 * **** * Relative 1.5 * **** * Entropy 1.2 ******** (15.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16948843-16948963 86 1.92e-06 ACCGATGAAT CAGCGGCG AAATGTCAAA chr3R:12426059-12426179 110 5.33e-06 TACTCTATTT CAGCGGTG TGG chr3R:31805404-31805524 23 5.33e-06 AAACGGAGAG CAGCGGTG GCTCAAAACC chrX:6110043-6110163 2 6.40e-06 T CGGCGGCG TCTCTCGCGA chrX:16967566-16967686 44 1.02e-05 GCCACTCCTT GAGCGGCG AACTGCACTC chrX:19665970-19666090 22 1.02e-05 GAGAGCCACA CAGGGGCG GAACGGTCTG chr2L:20950777-20950897 60 2.43e-05 GCGTGTGCTT CAGCCGTG TATACAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16948843-16948963 1.9e-06 85_[+4]_27 chr3R:12426059-12426179 5.3e-06 109_[+4]_3 chr3R:31805404-31805524 5.3e-06 22_[+4]_90 chrX:6110043-6110163 6.4e-06 1_[+4]_111 chrX:16967566-16967686 1e-05 43_[+4]_69 chrX:19665970-19666090 1e-05 21_[+4]_91 chr2L:20950777-20950897 2.4e-05 59_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGGYG width=8 seqs=7 chr3R:16948843-16948963 ( 86) CAGCGGCG 1 chr3R:12426059-12426179 ( 110) CAGCGGTG 1 chr3R:31805404-31805524 ( 23) CAGCGGTG 1 chrX:6110043-6110163 ( 2) CGGCGGCG 1 chrX:16967566-16967686 ( 44) GAGCGGCG 1 chrX:19665970-19666090 ( 22) CAGGGGCG 1 chr2L:20950777-20950897 ( 60) CAGCCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 8.3e+004 -945 225 -32 -945 142 -945 -32 -945 -945 -945 248 -945 -945 225 -32 -945 -945 -33 226 -945 -945 -945 248 -945 -945 167 -945 42 -945 -945 248 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.3e+004 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGGYG MEME-4 regular expression -------------------------------------------------------------------------------- CAGCGG[CT]G -------------------------------------------------------------------------------- Time 25.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRVCSCY MEME-5 width = 8 sites = 16 llr = 155 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::65:::: pos.-specific C :a:3a5a5 probability G a:43:5:: matrix T :::::::5 bits 2.5 ** * * 2.2 ** * * 2.0 ** * * 1.7 ** * * Relative 1.5 ** *** Entropy 1.2 ** *** (14.0 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAACCCC consensus GC G T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16458707-16458827 12 3.86e-06 TGCATACTTT GCGACGCC ACTGTGCGAA chrX:5972161-5972281 38 1.51e-05 AGGGGTTTCA GCAACCCC TCCGAAATCG chrX:19308078-19308198 91 1.51e-05 ATTTGTTGTT GCGCCGCC TTGCCGCGTT chrX:10184860-10184980 97 1.51e-05 TAACCTCAAT GCGGCGCC CACTTGAGAG chr2L:3598607-3598727 109 1.51e-05 CGATTCATTC GCAACCCC ACTT chrX:17751874-17751994 1 2.29e-05 . GCACCGCC GATGTAAGAT chr2L:21163517-21163637 108 2.29e-05 CAGCAGCGTG GCAGCCCC GTTGA chrX:14738594-14738714 75 2.29e-05 ATTAGCGTAT GCAGCCCC CCCATTTCGC chr2L:21156207-21156327 50 2.97e-05 GTGTGGCAAA GCGACGCT GCCACGACGA chrX:19505695-19505815 99 4.98e-05 GGCTGAGCTG GCAACCCT GATGCCATCG chrX:3968835-3968955 20 4.98e-05 CGTCGATGCG GCAACGCT GAGCCATCAG chr2R:21712042-21712162 92 4.98e-05 AATCCTGCAA GCGCCCCT GTAAGCTTGT chrX:6973428-6973548 38 4.98e-05 TAGTGATGAC GCAACCCT AAAGATTTAG chr3L:9898609-9898729 8 4.98e-05 TTCAGTT GCGGCCCT GCCAGGGAGT chrX:16105828-16105948 2 4.98e-05 G GCAACGCT CGTAAGAAAT chr3R:19491126-19491246 40 6.36e-05 AGCCATGTAT GCACCGCT TGACAAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16458707-16458827 3.9e-06 11_[+5]_101 chrX:5972161-5972281 1.5e-05 37_[+5]_75 chrX:19308078-19308198 1.5e-05 90_[+5]_22 chrX:10184860-10184980 1.5e-05 96_[+5]_16 chr2L:3598607-3598727 1.5e-05 108_[+5]_4 chrX:17751874-17751994 2.3e-05 [+5]_112 chr2L:21163517-21163637 2.3e-05 107_[+5]_5 chrX:14738594-14738714 2.3e-05 74_[+5]_38 chr2L:21156207-21156327 3e-05 49_[+5]_63 chrX:19505695-19505815 5e-05 98_[+5]_14 chrX:3968835-3968955 5e-05 19_[+5]_93 chr2R:21712042-21712162 5e-05 91_[+5]_21 chrX:6973428-6973548 5e-05 37_[+5]_75 chr3L:9898609-9898729 5e-05 7_[+5]_105 chrX:16105828-16105948 5e-05 1_[+5]_111 chr3R:19491126-19491246 6.4e-05 39_[+5]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRVCSCY width=8 seqs=16 chrX:16458707-16458827 ( 12) GCGACGCC 1 chrX:5972161-5972281 ( 38) GCAACCCC 1 chrX:19308078-19308198 ( 91) GCGCCGCC 1 chrX:10184860-10184980 ( 97) GCGGCGCC 1 chr2L:3598607-3598727 ( 109) GCAACCCC 1 chrX:17751874-17751994 ( 1) GCACCGCC 1 chr2L:21163517-21163637 ( 108) GCAGCCCC 1 chrX:14738594-14738714 ( 75) GCAGCCCC 1 chr2L:21156207-21156327 ( 50) GCGACGCT 1 chrX:19505695-19505815 ( 99) GCAACCCT 1 chrX:3968835-3968955 ( 20) GCAACGCT 1 chr2R:21712042-21712162 ( 92) GCGCCCCT 1 chrX:6973428-6973548 ( 38) GCAACCCT 1 chr3L:9898609-9898729 ( 8) GCGGCCCT 1 chrX:16105828-16105948 ( 2) GCAACGCT 1 chr3R:19491126-19491246 ( 40) GCACCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 8.3e+004 -1064 -1064 248 -1064 -1064 248 -1064 -1064 96 -1064 107 -1064 64 48 48 -1064 -1064 248 -1064 -1064 -1064 148 148 -1064 -1064 248 -1064 -1064 -1064 148 -1064 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.500000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRVCSCY MEME-5 regular expression -------------------------------------------------------------------------------- GC[AG][ACG]C[CG]C[CT] -------------------------------------------------------------------------------- Time 32.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2731501-2731621 2.64e-01 120 chr3R:15644888-15645008 8.49e-03 102_[+2(9.58e-06)]_10 chr3R:26859330-26859450 8.66e-02 2_[+2(1.57e-05)]_110 chr3R:29699332-29699452 9.68e-01 120 chr3L:1167002-1167122 9.99e-01 120 chr2R:11134464-11134584 5.57e-02 92_[+1(2.18e-05)]_20 chrX:5889130-5889250 2.22e-01 120 chrX:6615591-6615711 9.98e-01 120 chr3L:7243911-7244031 2.06e-01 120 chrX:11846482-11846602 9.00e-01 120 chr2R:20906665-20906785 5.11e-05 88_[+1(8.30e-06)]_24 chrX:16105828-16105948 4.74e-03 1_[+5(4.98e-05)]_111 chrX:16458707-16458827 8.06e-07 11_[+5(3.86e-06)]_21_[+2(3.69e-05)]_\ 39_[+4(9.52e-05)]_25 chr2R:11809465-11809585 4.39e-01 120 chr3L:13845359-13845479 5.79e-02 120 chrX:12221674-12221794 4.79e-01 120 chrX:8677600-8677720 7.86e-01 120 chr2R:20091256-20091376 8.37e-01 120 chr2L:10488677-10488797 9.79e-01 120 chr2L:7619373-7619493 9.01e-01 120 chr2L:14619766-14619886 9.84e-01 120 chr2R:13224882-13225002 8.81e-01 120 chr3R:16957909-16958029 1.39e-01 120 chr2L:14123714-14123834 1.65e-01 120 chr2L:19884579-19884699 9.99e-01 120 chr2L:7149095-7149215 7.76e-01 120 chr3R:9344904-9345024 9.36e-01 120 chr2R:16091907-16092027 8.47e-01 120 chrX:16650544-16650664 3.34e-01 120 chrX:7703110-7703230 1.00e+00 120 chr2R:19874689-19874809 8.86e-02 120 chrX:5516186-5516306 9.92e-01 120 chr2L:19233468-19233588 1.32e-01 120 chrX:15591872-15591992 3.06e-02 120 chr2R:20590721-20590841 2.89e-01 120 chr3L:7634846-7634966 9.20e-01 120 chr3L:1424613-1424733 9.97e-01 120 chr2R:14783012-14783132 1.87e-01 120 chr3L:5819429-5819549 9.97e-01 120 chrX:14738594-14738714 4.11e-02 74_[+5(2.29e-05)]_38 chr2L:7617000-7617120 9.56e-01 120 chr3R:26436709-26436829 2.11e-01 111_[+2(1.57e-05)]_1 chr3R:12712602-12712722 4.99e-02 57_[+2(5.53e-05)]_55 chr3L:3875122-3875242 3.63e-01 120 chr3R:21214878-21214998 2.93e-01 120 chr2R:13617999-13618119 9.99e-01 120 chr2R:15835435-15835555 9.69e-01 120 chr2L:9448873-9448993 1.09e-01 120 chr2L:3600984-3601104 9.94e-01 120 chr3R:15292452-15292572 3.82e-01 120 chr3L:9864303-9864423 2.40e-01 120 chr3R:27440716-27440836 9.87e-01 120 chr3R:12591807-12591927 2.42e-01 120 chr2R:21909973-21910093 1.96e-01 120 chr3R:5065121-5065241 3.24e-01 120 chr3L:18357759-18357879 6.44e-02 120 chr3L:9898609-9898729 2.92e-03 7_[+5(4.98e-05)]_105 chrX:13630453-13630573 5.06e-01 120 chr2L:9996826-9996946 9.02e-01 120 chrX:8417109-8417229 1.00e+00 120 chr2L:21156207-21156327 2.86e-04 30_[+2(3.69e-05)]_11_[+5(2.97e-05)]_\ 63 chr3R:4846899-4847019 5.24e-01 120 chr3L:22277374-22277494 3.33e-02 120 chr2R:22379333-22379453 1.64e-01 120 chrX:771844-771964 1.36e-01 13_[+2(5.53e-05)]_99 chrX:18837194-18837314 6.64e-02 120 chr3R:21188135-21188255 6.21e-01 120 chrX:19884408-19884528 9.92e-01 120 chrX:17510636-17510756 7.75e-01 120 chrX:12699250-12699370 9.95e-01 120 chr3R:6723970-6724090 9.09e-01 120 chrX:7975981-7976101 9.90e-01 120 chr3L:16768426-16768546 8.41e-01 120 chr2L:15741555-15741675 2.31e-01 120 chr3R:25489813-25489933 2.36e-02 55_[+2(3.69e-05)]_57 chr3R:31805404-31805524 7.83e-06 22_[+4(5.33e-06)]_24_[+2(3.69e-05)]_\ 58 chr3L:94204-94324 1.89e-02 102_[+1(1.15e-05)]_10 chr3L:9468473-9468593 9.94e-01 120 chr3L:16486532-16486652 2.66e-01 120 chr2R:7054401-7054521 2.18e-01 120 chrX:1880397-1880517 4.82e-01 120 chrX:18405099-18405219 1.07e-03 108_[+3(3.53e-05)]_4 chrX:4581872-4581992 9.89e-01 120 chr3L:9614078-9614198 1.17e-04 98_[+3(3.72e-05)]_14 chr3R:23387076-23387196 9.97e-01 120 chr3R:5861557-5861677 1.45e-03 120 chr3R:31687963-31688083 8.54e-02 92_[+2(1.57e-05)]_20 chr2L:8746354-8746474 1.75e-01 120 chr3R:4775438-4775558 6.20e-01 120 chrX:15739091-15739211 5.83e-02 110_[+3(2.15e-05)]_2 chrX:18774887-18775007 1.39e-02 112_[+3(2.15e-05)] chr3L:1568951-1569071 2.32e-02 120 chrX:5639232-5639352 7.97e-02 120 chr3R:8469836-8469956 7.57e-01 120 chrX:15653658-15653778 2.61e-03 96_[+1(2.18e-05)]_16 chr2R:22384471-22384591 7.63e-01 120 chr3R:26888435-26888555 6.61e-01 120 chr2L:3587464-3587584 9.82e-01 120 chrX:4322751-4322871 5.93e-02 120 chrX:18239428-18239548 6.74e-05 44_[+3(4.25e-05)]_59_[+1(2.98e-06)]_\ 1 chr2L:3598607-3598727 1.16e-01 108_[+5(1.51e-05)]_4 chr3L:16760382-16760502 9.74e-01 120 chr2R:22450489-22450609 7.30e-01 120 chr3R:16718090-16718210 7.49e-01 120 chrX:10363000-10363120 1.00e+00 120 chr3L:8440920-8441040 9.77e-01 120 chr3R:8563974-8564094 1.52e-02 120 chrX:4498358-4498478 4.88e-02 31_[+2(5.53e-05)]_81 chr3R:14657213-14657333 7.61e-01 120 chrX:16103666-16103786 6.53e-01 120 chr3R:21850238-21850358 2.60e-02 12_[+2(3.69e-05)]_100 chr2R:18277146-18277266 1.37e-01 120 chr3R:26235163-26235283 9.53e-01 120 chrX:5968241-5968361 2.66e-01 120 chr2R:12274359-12274479 4.24e-07 47_[+1(8.30e-06)]_1_[+1(5.98e-05)]_\ 27_[+3(1.26e-05)]_21 chr2R:24893770-24893890 9.89e-01 120 chr3R:28857441-28857561 3.50e-01 120 chr3R:18366422-18366542 4.21e-01 120 chrX:17830320-17830440 3.75e-01 120 chr3R:18663611-18663731 7.61e-02 120 chrX:6973428-6973548 1.12e-02 37_[+5(4.98e-05)]_75 chr3R:19491126-19491246 4.86e-03 39_[+5(6.36e-05)]_52_[+1(5.31e-05)]_\ 13 chr3L:1216562-1216682 4.25e-01 120 chrX:14622361-14622481 6.17e-02 109_[+2(5.53e-05)]_3 chr2L:21658573-21658693 7.32e-02 120 chr3R:11735434-11735554 1.99e-03 89_[+3(1.26e-05)]_23 chr3L:13964689-13964809 4.15e-01 120 chrX:17176719-17176839 8.35e-01 120 chr2L:19059040-19059160 8.96e-01 120 chrX:13128084-13128204 2.50e-05 51_[+3(7.93e-05)]_20_[+4(5.62e-05)]_\ 4_[+2(9.58e-06)]_11_[+2(5.53e-05)]_2 chr3R:12997682-12997802 1.00e+00 120 chr2R:12437149-12437269 7.46e-01 120 chr3L:1702619-1702739 1.90e-02 43_[+3(3.84e-06)]_69 chr3L:4353896-4354016 2.53e-02 120 chr3L:20630788-20630908 9.85e-01 120 chr3L:11334157-11334277 9.90e-01 120 chrX:19665970-19666090 6.39e-06 21_[+4(1.02e-05)]_24_[+1(1.04e-05)]_\ 59 chrX:6037371-6037491 2.59e-03 42_[+4(2.94e-05)]_70 chr2L:14024836-14024956 6.63e-01 120 chrX:14602682-14602802 3.23e-04 37_[+3(1.26e-05)]_75 chr3R:22039627-22039747 9.02e-01 120 chr3R:11368838-11368958 9.85e-01 120 chrX:7571383-7571503 4.62e-01 120 chr2R:23176733-23176853 2.64e-02 120 chrX:9193780-9193900 4.36e-04 100_[+1(2.75e-05)]_12 chr3R:28599625-28599745 2.30e-01 120 chr2L:5491343-5491463 1.68e-01 9_[+2(3.69e-05)]_103 chrX:20631270-20631390 9.45e-01 120 chr3R:16991951-16992071 9.27e-01 120 chr2L:12351000-12351120 7.36e-01 120 chr3L:9028186-9028306 9.86e-01 120 chrX:13845873-13845993 1.19e-03 [+3(3.53e-05)]_112 chr2R:21535558-21535678 6.39e-04 44_[+1(2.98e-06)]_58_[+1(5.31e-05)]_\ 2 chrX:6110043-6110163 8.58e-08 1_[+4(6.40e-06)]_49_[+1(2.98e-06)]_\ 54 chr3R:16948843-16948963 2.34e-04 10_[+2(6.76e-05)]_67_[+4(1.92e-06)]_\ 27 chr3L:8751405-8751525 4.43e-01 120 chr2L:15751110-15751230 5.50e-02 120 chr4:406956-407076 1.59e-03 21_[+1(5.31e-05)]_49_[+1(4.88e-06)]_\ 34 chr2R:11095293-11095413 3.18e-01 120 chr2R:18994137-18994257 2.72e-01 120 chrX:5671808-5671928 1.33e-02 120 chrX:7015109-7015229 3.88e-01 120 chr3R:27239085-27239205 2.97e-03 110_[+2(6.76e-05)]_2 chrX:10184860-10184980 1.44e-04 70_[+2(6.76e-05)]_18_[+5(1.51e-05)]_\ 16 chr3L:15321066-15321186 8.42e-01 120 chr3L:199234-199354 8.84e-04 40_[+1(1.15e-05)]_72 chrX:7162660-7162780 3.38e-02 120 chrX:2318512-2318632 5.29e-01 120 chr3R:16748713-16748833 2.38e-04 18_[+1(8.30e-06)]_94 chr2L:901448-901568 1.30e-02 46_[+1(2.75e-05)]_66 chrX:1859015-1859135 5.21e-01 120 chrX:6375816-6375936 2.28e-01 120 chr3L:9864517-9864637 5.13e-01 120 chrX:19308078-19308198 2.14e-03 18_[+5(9.74e-05)]_64_[+5(1.51e-05)]_\ 22 chr2R:9693550-9693670 2.21e-01 120 chrX:4540704-4540824 7.09e-01 120 chr3R:8033160-8033280 8.38e-01 120 chrX:8720326-8720446 5.23e-01 120 chr2R:10066620-10066740 9.92e-01 120 chr2L:15254315-15254435 2.98e-01 120 chr3R:9055240-9055360 1.46e-02 43_[+1(2.94e-05)]_69 chr2L:3775971-3776091 4.05e-01 120 chrX:19008954-19009074 1.82e-02 36_[+3(1.26e-05)]_76 chrX:3068446-3068566 4.17e-02 120 chrX:18899946-18900066 9.88e-01 120 chr2R:20601170-20601290 3.96e-04 37_[+1(3.82e-05)]_75 chr3R:23679911-23680031 4.71e-04 53_[+4(9.52e-05)]_59 chr2R:9681937-9682057 8.63e-01 120 chr3L:13922454-13922574 9.01e-01 120 chr2L:1428506-1428626 9.75e-03 98_[+4(6.63e-05)]_14 chr2L:9224565-9224685 4.73e-04 41_[+3(2.15e-05)]_57_[+5(9.74e-05)]_\ 6 chr2R:7699132-7699252 6.50e-02 120 chr3L:1578655-1578775 4.84e-02 120 chr2R:21712042-21712162 1.02e-01 91_[+5(4.98e-05)]_21 chr3L:15235325-15235445 1.01e-01 69_[+2(6.76e-05)]_43 chr3L:10745673-10745793 9.99e-01 120 chr3L:10845152-10845272 1.59e-01 120 chr3R:8744363-8744483 9.52e-01 120 chr2R:21183183-21183303 8.58e-01 120 chrX:12463094-12463214 2.41e-01 120 chr2L:18688821-18688941 3.60e-01 120 chr3R:12426059-12426179 1.24e-03 109_[+4(5.33e-06)]_3 chr2L:18921381-18921501 9.98e-01 120 chr2L:8573051-8573171 3.94e-01 120 chr3R:5076311-5076431 7.84e-01 120 chr2L:21260999-21261119 8.58e-02 120 chrX:3690691-3690811 9.32e-01 120 chr2L:4394008-4394128 7.54e-01 120 chr2R:23092253-23092373 5.49e-01 120 chr2R:9544833-9544953 6.69e-01 120 chr3R:8171680-8171800 5.33e-03 95_[+2(9.58e-06)]_17 chrX:20257363-20257483 2.61e-04 54_[+3(1.26e-05)]_15_[+1(7.99e-05)]_\ 35 chr2R:13054985-13055105 8.90e-01 120 chr2R:9971167-9971287 6.09e-01 120 chr2L:14245642-14245762 7.12e-01 120 chr3R:31793809-31793929 8.35e-02 120 chrX:1370156-1370276 1.18e-01 120 chr2L:7871914-7872034 5.05e-01 120 chr3R:25054622-25054742 2.62e-01 120 chrX:3968835-3968955 8.59e-05 19_[+5(4.98e-05)]_81_[+3(2.83e-05)]_\ 4 chr3L:3197619-3197739 4.62e-01 120 chr2L:21163517-21163637 3.45e-06 78_[+3(1.26e-05)]_11_[+4(9.52e-05)]_\ 2_[+5(2.29e-05)]_5 chrX:16967566-16967686 6.05e-08 30_[+3(3.72e-05)]_5_[+4(1.02e-05)]_\ 14_[+1(1.07e-06)]_47 chrX:9137273-9137393 9.98e-01 120 chr3L:16806198-16806318 5.15e-01 120 chrX:17751874-17751994 6.56e-06 [+5(2.29e-05)]_44_[+1(4.88e-06)]_60 chr2L:19867100-19867220 9.79e-01 120 chr2R:9388593-9388713 7.30e-01 120 chrX:19505695-19505815 1.79e-02 98_[+5(4.98e-05)]_14 chr2L:3566693-3566813 8.96e-01 120 chr2R:8951590-8951710 3.76e-01 120 chr2L:20950777-20950897 8.01e-04 59_[+4(2.43e-05)]_14_[+3(7.93e-05)]_\ 31 chr3L:14977918-14978038 7.17e-01 120 chrX:11548832-11548952 4.31e-01 120 chrX:1052839-1052959 2.23e-02 102_[+2(5.53e-05)]_10 chr2L:3852280-3852400 9.75e-01 120 chr2L:1473520-1473640 2.07e-02 120 chr2R:8914039-8914159 2.05e-03 58_[+3(1.26e-05)]_54 chr2R:19669849-19669969 9.03e-01 120 chr2L:18900009-18900129 2.08e-01 120 chrX:5883513-5883633 7.91e-04 73_[+3(1.92e-06)]_39 chr3R:22023324-22023444 7.19e-01 120 chr3R:21493773-21493893 7.05e-02 120 chrX:5285953-5286073 9.99e-01 120 chr3L:1350599-1350719 1.50e-01 120 chr3L:11534122-11534242 6.31e-01 120 chr3R:30304895-30305015 7.72e-01 120 chrX:5972161-5972281 2.98e-04 37_[+5(1.51e-05)]_54_[+5(4.98e-05)]_\ 13 chr3R:5636900-5637020 6.60e-01 120 chr3L:8399197-8399317 1.89e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************