******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/psq.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:13753899-13754019 1.0000 120 chr3R:10331931-10332051 1.0000 120 chr3L:9105663-9105783 1.0000 120 chr3R:30600028-30600148 1.0000 120 chr2R:12980240-12980360 1.0000 120 chr2R:10432942-10433062 1.0000 120 chrX:6859363-6859483 1.0000 120 chrX:10803799-10803919 1.0000 120 chr2L:1666951-1667071 1.0000 120 chr2L:16351871-16351991 1.0000 120 chr3L:20400363-20400483 1.0000 120 chr2R:21712723-21712843 1.0000 120 chr2R:14484182-14484302 1.0000 120 chr2L:247221-247341 1.0000 120 chr2R:13133479-13133599 1.0000 120 chr3R:30804655-30804775 1.0000 120 chr3R:22043413-22043533 1.0000 120 chr2L:15745174-15745294 1.0000 120 chr3L:3765497-3765617 1.0000 120 chr3R:640508-640628 1.0000 120 chr2R:21709971-21710091 1.0000 120 chrX:4687501-4687621 1.0000 120 chr2L:9494542-9494662 1.0000 120 chr3R:567339-567459 1.0000 120 chr3R:23155695-23155815 1.0000 120 chrX:13754222-13754342 1.0000 120 chr2L:21108003-21108123 1.0000 120 chr3L:20028574-20028694 1.0000 120 chrX:3686142-3686262 1.0000 120 chr2L:640795-640915 1.0000 120 chr2R:15092621-15092741 1.0000 120 chr3L:2765795-2765915 1.0000 120 chrX:4909807-4909927 1.0000 120 chrX:5918206-5918326 1.0000 120 chr2L:16350851-16350971 1.0000 120 chrX:4687214-4687334 1.0000 120 chr2L:16703194-16703314 1.0000 120 chrX:6858550-6858670 1.0000 120 chrX:2013380-2013500 1.0000 120 chrX:8559223-8559343 1.0000 120 chr2R:9094657-9094777 1.0000 120 chr3R:12627079-12627199 1.0000 120 chr3L:4103255-4103375 1.0000 120 chr3R:5670178-5670298 1.0000 120 chr2R:17436081-17436201 1.0000 120 chr3R:16230893-16231013 1.0000 120 chrX:2010891-2011011 1.0000 120 chr3R:30058599-30058719 1.0000 120 chr3R:10330866-10330986 1.0000 120 chrX:17709633-17709753 1.0000 120 chr3R:24047716-24047836 1.0000 120 chrX:3446558-3446678 1.0000 120 chrX:12575377-12575497 1.0000 120 chr2L:21108419-21108539 1.0000 120 chrX:10790566-10790686 1.0000 120 chr2R:10569417-10569537 1.0000 120 chr3L:2636089-2636209 1.0000 120 chr3R:10108897-10109017 1.0000 120 chr3R:21606413-21606533 1.0000 120 chr3R:5670463-5670583 1.0000 120 chr2R:12262195-12262315 1.0000 120 chr3L:1351107-1351227 1.0000 120 chr2L:16728107-16728227 1.0000 120 chrX:6857626-6857746 1.0000 120 chr3L:14003395-14003515 1.0000 120 chrX:7066668-7066788 1.0000 120 chr2L:248556-248676 1.0000 120 chr3L:20028970-20029090 1.0000 120 chrX:13753405-13753525 1.0000 120 chr3L:2635067-2635187 1.0000 120 chrX:17077255-17077375 1.0000 120 chr3R:19847648-19847768 1.0000 120 chr2L:19362528-19362648 1.0000 120 chr3L:19909735-19909855 1.0000 120 chrX:10602057-10602177 1.0000 120 chr2L:19362811-19362931 1.0000 120 chrX:10742498-10742618 1.0000 120 chr3L:20401258-20401378 1.0000 120 chrX:12754839-12754959 1.0000 120 chr3R:5668861-5668981 1.0000 120 chr3R:28332834-28332954 1.0000 120 chr3R:24220981-24221101 1.0000 120 chr2L:11805930-11806050 1.0000 120 chr2R:12261057-12261177 1.0000 120 chrX:16593665-16593785 1.0000 120 chr2L:10396605-10396725 1.0000 120 chrX:18479828-18479948 1.0000 120 chrX:10326465-10326585 1.0000 120 chr3L:9855416-9855536 1.0000 120 chr3R:13685126-13685246 1.0000 120 chr2L:16352259-16352379 1.0000 120 chr2R:14962686-14962806 1.0000 120 chrX:18864218-18864338 1.0000 120 chr2R:9712862-9712982 1.0000 120 chr2L:20800727-20800847 1.0000 120 chr3R:22726666-22726786 1.0000 120 chr2R:20997629-20997749 1.0000 120 chr3L:10516476-10516596 1.0000 120 chr2L:11806382-11806502 1.0000 120 chr3R:24565168-24565288 1.0000 120 chr3R:4804529-4804649 1.0000 120 chr2L:20735493-20735613 1.0000 120 chr3L:2766093-2766213 1.0000 120 chr3R:10761661-10761781 1.0000 120 chr2L:12974515-12974635 1.0000 120 chr2L:20734688-20734808 1.0000 120 chrX:4937848-4937968 1.0000 120 chrX:12739095-12739215 1.0000 120 chr3R:21592080-21592200 1.0000 120 chr3R:24221675-24221795 1.0000 120 chr3L:11789196-11789316 1.0000 120 chr2L:21156507-21156627 1.0000 120 chr2L:19547684-19547804 1.0000 120 chr3L:5184586-5184706 1.0000 120 chr3R:25472164-25472284 1.0000 120 chr3R:10133897-10134017 1.0000 120 chr2L:11807373-11807493 1.0000 120 chr3L:2632802-2632922 1.0000 120 chrX:2010432-2010552 1.0000 120 chr2R:19125898-19126018 1.0000 120 chr3R:9236120-9236240 1.0000 120 chrX:12575707-12575827 1.0000 120 chr2R:12338062-12338182 1.0000 120 chrX:10806586-10806706 1.0000 120 chr3L:14002417-14002537 1.0000 120 chrX:17710326-17710446 1.0000 120 chr2R:6168436-6168556 1.0000 120 chr3L:20006285-20006405 1.0000 120 chrX:3773098-3773218 1.0000 120 chr3R:13684814-13684934 1.0000 120 chr2R:12985611-12985731 1.0000 120 chr2R:22680853-22680973 1.0000 120 chr3L:11364687-11364807 1.0000 120 chr3R:6406268-6406388 1.0000 120 chrX:5880205-5880325 1.0000 120 chrX:11817817-11817937 1.0000 120 chrX:11154298-11154418 1.0000 120 chrX:11369449-11369569 1.0000 120 chr2R:6636074-6636194 1.0000 120 chr3R:24234209-24234329 1.0000 120 chr2R:12984455-12984575 1.0000 120 chrX:3965228-3965348 1.0000 120 chr3R:24231283-24231403 1.0000 120 chr3L:1329954-1330074 1.0000 120 chr3R:16231410-16231530 1.0000 120 chr2L:10396310-10396430 1.0000 120 chrX:22433021-22433141 1.0000 120 chrX:12736260-12736380 1.0000 120 chr3R:16232408-16232528 1.0000 120 chr2L:23512772-23512892 1.0000 120 chr2L:14689027-14689147 1.0000 120 chr3L:14003715-14003835 1.0000 120 chrX:6856467-6856587 1.0000 120 chrX:7710044-7710164 1.0000 120 chr2L:13165915-13166035 1.0000 120 chrX:12753629-12753749 1.0000 120 chr3L:11365177-11365297 1.0000 120 chr3R:21107896-21108016 1.0000 120 chrX:12751762-12751882 1.0000 120 chr3R:10761426-10761546 1.0000 120 chr3R:18398585-18398705 1.0000 120 chrX:8560215-8560335 1.0000 120 chrX:2633838-2633958 1.0000 120 chr3L:2553279-2553399 1.0000 120 chr3L:1534280-1534400 1.0000 120 chr2R:12261381-12261501 1.0000 120 chr2R:14604198-14604318 1.0000 120 chr2R:9692463-9692583 1.0000 120 chr2R:10604170-10604290 1.0000 120 chr3L:1802749-1802869 1.0000 120 chr2R:15129644-15129764 1.0000 120 chr3R:24585451-24585571 1.0000 120 chrX:11368328-11368448 1.0000 120 chr2R:12985812-12985932 1.0000 120 chr3R:4806165-4806285 1.0000 120 chr3L:5769253-5769373 1.0000 120 chrX:5689737-5689857 1.0000 120 chr3R:12460120-12460240 1.0000 120 chr3L:1802981-1803101 1.0000 120 chrX:12012288-12012408 1.0000 120 chrX:11368107-11368227 1.0000 120 chrX:6868387-6868507 1.0000 120 chr3L:14002988-14003108 1.0000 120 chr2R:16594237-16594357 1.0000 120 chr3R:10331419-10331539 1.0000 120 chr3R:23157382-23157502 1.0000 120 chr3R:14575702-14575822 1.0000 120 chr3R:13684276-13684396 1.0000 120 chr3R:15803968-15804088 1.0000 120 chr3R:24581983-24582103 1.0000 120 chr2R:13133032-13133152 1.0000 120 chr3R:24651228-24651348 1.0000 120 chr3R:24047381-24047501 1.0000 120 chr2R:12588642-12588762 1.0000 120 chr3R:30057927-30058047 1.0000 120 chr3R:6406966-6407086 1.0000 120 chrX:6862801-6862921 1.0000 120 chr3R:30794878-30794998 1.0000 120 chr3L:20403429-20403549 1.0000 120 chr3L:21026659-21026779 1.0000 120 chr3R:31748126-31748246 1.0000 120 chr3R:24649946-24650066 1.0000 120 chr3L:20518536-20518656 1.0000 120 chr3R:21064577-21064697 1.0000 120 chr3L:3811070-3811190 1.0000 120 chr2R:12593363-12593483 1.0000 120 chr2R:13935313-13935433 1.0000 120 chr2L:11807683-11807803 1.0000 120 chr2R:21713431-21713551 1.0000 120 chr2R:10564946-10565066 1.0000 120 chr2R:8067978-8068098 1.0000 120 chr3R:29229124-29229244 1.0000 120 chr2L:2236910-2237030 1.0000 120 chrX:18863884-18864004 1.0000 120 chr3L:5768757-5768877 1.0000 120 chr3L:14002046-14002166 1.0000 120 chr3R:31669331-31669451 1.0000 120 chr3R:6406579-6406699 1.0000 120 chrX:17709968-17710088 1.0000 120 chr2L:72938-73058 1.0000 120 chrX:10815730-10815850 1.0000 120 chr2L:16727779-16727899 1.0000 120 chrX:13404028-13404148 1.0000 120 chr2L:16534009-16534129 1.0000 120 chr3R:14904006-14904126 1.0000 120 chr2L:21156278-21156398 1.0000 120 chr3R:10331197-10331317 1.0000 120 chr2R:23697952-23698072 1.0000 120 chr2R:10429700-10429820 1.0000 120 chrX:17077752-17077872 1.0000 120 chrX:17887340-17887460 1.0000 120 chrX:19497006-19497126 1.0000 120 chr3R:9928617-9928737 1.0000 120 chr3L:20403733-20403853 1.0000 120 chr2R:15311442-15311562 1.0000 120 chr2R:9969133-9969253 1.0000 120 chr3L:9366860-9366980 1.0000 120 chr3R:29772199-29772319 1.0000 120 chr3R:12425989-12426109 1.0000 120 chr3R:24583078-24583198 1.0000 120 chr3R:29772568-29772688 1.0000 120 chr2R:21646512-21646632 1.0000 120 chr3L:14004083-14004203 1.0000 120 chr3L:20402710-20402830 1.0000 120 chr2R:14576182-14576302 1.0000 120 chr2R:10566921-10567041 1.0000 120 chrX:12575017-12575137 1.0000 120 chrX:12754034-12754154 1.0000 120 chrX:12750881-12751001 1.0000 120 chr3L:10515867-10515987 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_psq/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/psq.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.201 G 0.207 T 0.293 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.201 G 0.208 T 0.293 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-1 width = 8 sites = 34 llr = 334 E-value = 1.6e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 719:a:a: pos.-specific C :9:a:a:a probability G 3:1::::: matrix T 1::::::: bits 2.3 * * * 2.1 * * * 1.9 ***** 1.6 * ***** Relative 1.4 ******* Entropy 1.2 ******* (14.2 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10566921-10567041 18 1.30e-05 CTGCTcacac acacacac acacaGAGTC chrX:10815730-10815850 8 1.30e-05 gaaactc acacacac aaatgcacgc chr3L:21026659-21026779 65 1.30e-05 TTCCTCTCAC ACACACAC GCATCAACCA chr3R:24651228-24651348 81 1.30e-05 TCAGATTTGC ACACACAC agagaaagag chr2R:15129644-15129764 18 1.30e-05 CTTCGcagac acacacac acgcacacaG chr3R:18398585-18398705 11 1.30e-05 CGACTAACAC ACACACAC ACTGCGAACG chrX:12753629-12753749 28 1.30e-05 ATAGAAGTGC ACACACAC ATGTATGTGT chr2L:14689027-14689147 52 1.30e-05 ACGCACAAAA ACACACAC GGACGCCCGC chrX:5880205-5880325 44 1.30e-05 ataaatacat acacacac atacacacac chr2R:12985611-12985731 19 1.30e-05 tccagtacat acacacac gatgcatata chrX:17710326-17710446 111 1.30e-05 ACGCGCACGC ACACACAC AC chr3L:5184586-5184706 17 1.30e-05 AAGCTTACGC ACACACAC AATCACTTGG chrX:18864218-18864338 30 1.30e-05 cagcgcatat acacacac aAAGAAAAGA chr2R:12261057-12261177 32 1.30e-05 ATTTATGCAC ACACACAC TCGCATTCCT chr3R:5670463-5670583 51 1.30e-05 acgtacactc acacacac gcaacacaGT chr3L:2636089-2636209 30 1.30e-05 CAGAAAAAac acacacac atacgcaagc chr2L:16351871-16351991 21 1.30e-05 acaatcccac acacacac gcacgcacac chr2L:11807683-11807803 35 2.21e-05 Tcatacacaa gcacacac agatactctc chr2R:10604170-10604290 13 2.21e-05 CAAAAGTTAA GCACACAC ATTGGGCGTG chr2R:6168436-6168556 12 2.21e-05 agagCCGCAA GCACACAC CAATATACTT chr3R:9236120-9236240 28 2.21e-05 CTGGAAGCTC GCACACAC CCACACTTCT chr3L:2766093-2766213 106 2.21e-05 CACTAAACTC GCACACAC GCTCATT chr3R:13685126-13685246 29 2.21e-05 TTGCATACAT GCACACAC GCCTTCGGTT chr3R:24220981-24221101 10 2.21e-05 ggacgcgta gcacacac agaaacacTA chr3R:31748126-31748246 14 3.12e-05 CACGGCGATA ACGCACAC CAACACGGGC chrX:10806586-10806706 57 3.12e-05 AACTGAAACA ACGCACAC TCAAACACTC chr3R:24221675-24221795 32 3.12e-05 cacacacaag acgcacac atacacacaa chr2R:13133032-13133152 84 5.06e-05 TTAACACTAG AAACACAC TAAAAAATAC chrX:6856467-6856587 65 5.06e-05 TTCAATGGAA AAACACAC AGGAATACCA chrX:17709633-17709753 62 5.06e-05 CTGAAAAACA AAACACAC GCCTGCTGTT chr2R:12261381-12261501 73 6.34e-05 CATAACCGTT TCACACAC TTTCTCGTCT chr2L:19362811-19362931 67 6.34e-05 TGCACTCTTA TCACACAC GGCTATTCGT chrX:11369449-11369569 33 8.32e-05 ACGCAACTTT GAACACAC AAATGTAGCT chr2R:21709971-21710091 7 8.32e-05 AAACAA GAACACAC AGCACATAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10566921-10567041 1.3e-05 17_[+1]_95 chrX:10815730-10815850 1.3e-05 7_[+1]_105 chr3L:21026659-21026779 1.3e-05 64_[+1]_48 chr3R:24651228-24651348 1.3e-05 80_[+1]_32 chr2R:15129644-15129764 1.3e-05 17_[+1]_95 chr3R:18398585-18398705 1.3e-05 10_[+1]_102 chrX:12753629-12753749 1.3e-05 27_[+1]_85 chr2L:14689027-14689147 1.3e-05 51_[+1]_61 chrX:5880205-5880325 1.3e-05 43_[+1]_69 chr2R:12985611-12985731 1.3e-05 18_[+1]_94 chrX:17710326-17710446 1.3e-05 110_[+1]_2 chr3L:5184586-5184706 1.3e-05 16_[+1]_96 chrX:18864218-18864338 1.3e-05 29_[+1]_83 chr2R:12261057-12261177 1.3e-05 31_[+1]_81 chr3R:5670463-5670583 1.3e-05 50_[+1]_62 chr3L:2636089-2636209 1.3e-05 29_[+1]_83 chr2L:16351871-16351991 1.3e-05 20_[+1]_92 chr2L:11807683-11807803 2.2e-05 34_[+1]_78 chr2R:10604170-10604290 2.2e-05 12_[+1]_100 chr2R:6168436-6168556 2.2e-05 11_[+1]_101 chr3R:9236120-9236240 2.2e-05 27_[+1]_85 chr3L:2766093-2766213 2.2e-05 105_[+1]_7 chr3R:13685126-13685246 2.2e-05 28_[+1]_84 chr3R:24220981-24221101 2.2e-05 9_[+1]_103 chr3R:31748126-31748246 3.1e-05 13_[+1]_99 chrX:10806586-10806706 3.1e-05 56_[+1]_56 chr3R:24221675-24221795 3.1e-05 31_[+1]_81 chr2R:13133032-13133152 5.1e-05 83_[+1]_29 chrX:6856467-6856587 5.1e-05 64_[+1]_48 chrX:17709633-17709753 5.1e-05 61_[+1]_51 chr2R:12261381-12261501 6.3e-05 72_[+1]_40 chr2L:19362811-19362931 6.3e-05 66_[+1]_46 chrX:11369449-11369569 8.3e-05 32_[+1]_80 chr2R:21709971-21710091 8.3e-05 6_[+1]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=34 chr2R:10566921-10567041 ( 18) ACACACAC 1 chrX:10815730-10815850 ( 8) ACACACAC 1 chr3L:21026659-21026779 ( 65) ACACACAC 1 chr3R:24651228-24651348 ( 81) ACACACAC 1 chr2R:15129644-15129764 ( 18) ACACACAC 1 chr3R:18398585-18398705 ( 11) ACACACAC 1 chrX:12753629-12753749 ( 28) ACACACAC 1 chr2L:14689027-14689147 ( 52) ACACACAC 1 chrX:5880205-5880325 ( 44) ACACACAC 1 chr2R:12985611-12985731 ( 19) ACACACAC 1 chrX:17710326-17710446 ( 111) ACACACAC 1 chr3L:5184586-5184706 ( 17) ACACACAC 1 chrX:18864218-18864338 ( 30) ACACACAC 1 chr2R:12261057-12261177 ( 32) ACACACAC 1 chr3R:5670463-5670583 ( 51) ACACACAC 1 chr3L:2636089-2636209 ( 30) ACACACAC 1 chr2L:16351871-16351991 ( 21) ACACACAC 1 chr2L:11807683-11807803 ( 35) GCACACAC 1 chr2R:10604170-10604290 ( 13) GCACACAC 1 chr2R:6168436-6168556 ( 12) GCACACAC 1 chr3R:9236120-9236240 ( 28) GCACACAC 1 chr3L:2766093-2766213 ( 106) GCACACAC 1 chr3R:13685126-13685246 ( 29) GCACACAC 1 chr3R:24220981-24221101 ( 10) GCACACAC 1 chr3R:31748126-31748246 ( 14) ACGCACAC 1 chrX:10806586-10806706 ( 57) ACGCACAC 1 chr3R:24221675-24221795 ( 32) ACGCACAC 1 chr2R:13133032-13133152 ( 84) AAACACAC 1 chrX:6856467-6856587 ( 65) AAACACAC 1 chrX:17709633-17709753 ( 62) AAACACAC 1 chr2R:12261381-12261501 ( 73) TCACACAC 1 chr2L:19362811-19362931 ( 67) TCACACAC 1 chrX:11369449-11369569 ( 33) GAACACAC 1 chr2R:21709971-21710091 ( 7) GAACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.6e-017 118 -1173 35 -231 -102 209 -1173 -1173 161 -1173 -123 -1173 -1173 232 -1173 -1173 174 -1173 -1173 -1173 -1173 232 -1173 -1173 174 -1173 -1173 -1173 -1173 232 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.6e-017 0.676471 0.000000 0.264706 0.058824 0.147059 0.852941 0.000000 0.000000 0.911765 0.000000 0.088235 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CACACAC -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-2 width = 8 sites = 57 llr = 475 E-value = 9.5e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::11:1:: pos.-specific C 1::2::11 probability G 9:9:9:9: matrix T :a:818:9 bits 2.3 2.1 1.9 ** * 1.6 *** * * Relative 1.4 *** * ** Entropy 1.2 *** **** (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12754034-12754154 85 1.38e-05 TGGGTTGTGT GTGTGTGT GTTGGGGGGG chrX:10815730-10815850 108 1.38e-05 GCACTTGTAT GTGTGTGT GCGTT chr2R:10564946-10565066 33 1.38e-05 TTCTGTGTTT GTGTGTGT ATGTGCGTGT chr3R:31748126-31748246 80 1.38e-05 CAAAATAACT GTGTGTGT ATATGGGCAC chr2R:16594237-16594357 105 1.38e-05 gcaactgcac gtgtgtgt gccacaac chrX:6868387-6868507 45 1.38e-05 CTGTAGGTTT GTGTGTGT GCCGTACACA chr2L:13165915-13166035 37 1.38e-05 CCGTGAGTCT GTGTGTGT GCGCGTGTGC chr3R:24231283-24231403 88 1.38e-05 TTACgtgtgt gtgtgtgt gtgtgcgtgc chr2R:22680853-22680973 74 1.38e-05 ATTCGTGCAT GTGTGTGT ATTATTCCCC chr3L:11789196-11789316 9 1.38e-05 GCACTAGT GTGTGTGT GAGTCCGTGT chr3R:10761661-10761781 73 1.38e-05 ttctatgcga gtgtgtgt gtgtgtgtat chr3R:4804529-4804649 4 1.38e-05 CAT GTGTGTGT GCCAAGCGTT chr3L:10516476-10516596 53 1.38e-05 ACATAtgtgt gtgtgtgt gtgtgAAATA chrX:17077255-17077375 33 1.38e-05 gtatgtgtgt gtgtgtgt gttgtggtct chr3L:2635067-2635187 100 1.38e-05 TAAGACGCTA GTGTGTGT GCTAGTATGA chr3L:14003395-14003515 36 1.38e-05 TAAAACTAGT GTGTGTGT TTGTATGTGA chr3R:30058599-30058719 108 1.38e-05 gtgtgcgagt gtgtgtgt gcgta chr3L:9105663-9105783 97 1.38e-05 ATATTTATAA gtgtgtgt tcgtcctgca chrX:17709968-17710088 46 2.33e-05 ACCCATACAG GTGCGTGT TACCCAGACA chr3L:5769253-5769373 95 2.33e-05 GTGCGTTAGT GTGCGTGT GTCGGTGTCG chrX:12575707-12575827 55 2.33e-05 GAGAGTACGT GTGCGTGT GTATTTATAG chrX:10602057-10602177 68 2.33e-05 TATGTCTTTT GTGCGTGT TAGTGTTATG chrX:6859363-6859483 110 2.33e-05 TCTCGGCTGT GTGCGTGT GTT chr3R:10761426-10761546 64 3.27e-05 CCCACTCAGC GTGTGTGC GTGCTTGCAG chrX:3773098-3773218 41 3.27e-05 GTGTATGAAT GTGTGTGC TGATTGTTTT chr3R:10330866-10330986 60 3.27e-05 TGTCCCATTC GTGTGTGC ATAGGTGTGA chr2R:21646512-21646632 35 4.68e-05 TTTTGACTAT GTGTGAGT GTGTAATTTC chr3L:11365177-11365297 19 4.68e-05 GCTTGTATCT GTGTGAGT GAGTAAGTGT chr3L:14002417-14002537 56 4.68e-05 tataatatTT GTGTGAGT GTAGGAGAGG chr2L:640795-640915 61 4.68e-05 ATTTAAATAA GTGTGAGT GTATCGATGT chr2L:20800727-20800847 92 6.01e-05 TGGGTTTTCG GTGTGTCT CCATATGAGC chr3R:5668861-5668981 45 6.01e-05 AGTAATATTT GTGTGTCT ATTACCAAGT chr2R:12588642-12588762 113 7.35e-05 TGATATTCGG Ctgtgtgt chr3R:21606413-21606533 25 7.35e-05 CTTATAAGCG CTGTGTGT TTGTTTTGGG chr3R:5670463-5670583 110 8.75e-05 AGAATATAAG GTGAGTGT GAG chrX:6858550-6858670 47 8.75e-05 AAATGTATAT GTGAGTGT GGAATTTAAG chr2L:72938-73058 107 1.13e-04 GTGTAAACAT GTGTTTGT ACGCAT chr3R:13685126-13685246 47 1.23e-04 GCCTTCGGTT GTGCGAGT GGTTTAGTGT chr3R:24581983-24582103 79 1.43e-04 GCGGAAGTGT GTATGTGT GTCAACGGGA chr2R:12985812-12985932 37 1.43e-04 atatatgtat gtatgtgt agttgtatgt chrX:12753629-12753749 38 1.43e-04 ACACACACAT GTATGTGT GTACATATGG chr2R:9712862-9712982 16 1.52e-04 GGCAAGAAAA GTGCGTCT CAAAACAGAG chrX:18863884-18864004 32 1.72e-04 CATATCGAGT GTGTGAGC ACTATCGCTG chr3R:10331419-10331539 10 1.72e-04 CGAGTGTAA GTGGGTGT GGCCACGTCA chr3R:13684814-13684934 100 1.81e-04 CGTTGTGTCT GTGTGCGT CCAAGTGTCT chrX:12575017-12575137 43 2.20e-04 ATGCAATAAT GTGTATGT ACCCCAGACa chrX:11817817-11817937 69 2.20e-04 TATGATTTTT GTTTGTGT TGTTGTTTTT chrX:16593665-16593785 106 2.20e-04 ACGGAACACC GTTTGTGT TTATTAT chr3R:30804655-30804775 59 2.20e-04 ATACAAAATA GTGTATGT AGAACTGAAG chr2R:8067978-8068098 41 2.52e-04 CAGGTATTGA GTGTGACT CCGTTTTGAA chr3R:30057927-30058047 35 2.52e-04 TAAGAGCTAG GTGTGACT TCGTACAAAA chr3R:24649946-24650066 107 2.75e-04 GGTTGTCAGG CTGTGTGC TCTAAA chr3R:6406966-6407086 43 2.75e-04 TACAATACTC GTGCTTGT TCTCGCAGCG chr3R:28332834-28332954 113 2.75e-04 TGCACCGCGT GTGCTTGT chr2R:15092621-15092741 101 2.75e-04 TTGTTAGTTT CTGTGTGC TCTGCAtcag chr3R:24651228-24651348 12 3.39e-04 TCTTTCGCAA GTGTTTGC CAGAGTAAAG chr3R:16232408-16232528 82 4.39e-04 AATGCAACAT GTGAGTCT GCCCAGTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12754034-12754154 1.4e-05 84_[+2]_28 chrX:10815730-10815850 1.4e-05 107_[+2]_5 chr2R:10564946-10565066 1.4e-05 32_[+2]_80 chr3R:31748126-31748246 1.4e-05 79_[+2]_33 chr2R:16594237-16594357 1.4e-05 104_[+2]_8 chrX:6868387-6868507 1.4e-05 44_[+2]_68 chr2L:13165915-13166035 1.4e-05 36_[+2]_76 chr3R:24231283-24231403 1.4e-05 87_[+2]_25 chr2R:22680853-22680973 1.4e-05 73_[+2]_39 chr3L:11789196-11789316 1.4e-05 8_[+2]_104 chr3R:10761661-10761781 1.4e-05 72_[+2]_40 chr3R:4804529-4804649 1.4e-05 3_[+2]_109 chr3L:10516476-10516596 1.4e-05 52_[+2]_60 chrX:17077255-17077375 1.4e-05 32_[+2]_80 chr3L:2635067-2635187 1.4e-05 99_[+2]_13 chr3L:14003395-14003515 1.4e-05 35_[+2]_77 chr3R:30058599-30058719 1.4e-05 107_[+2]_5 chr3L:9105663-9105783 1.4e-05 96_[+2]_16 chrX:17709968-17710088 2.3e-05 45_[+2]_67 chr3L:5769253-5769373 2.3e-05 94_[+2]_18 chrX:12575707-12575827 2.3e-05 54_[+2]_58 chrX:10602057-10602177 2.3e-05 67_[+2]_45 chrX:6859363-6859483 2.3e-05 109_[+2]_3 chr3R:10761426-10761546 3.3e-05 63_[+2]_49 chrX:3773098-3773218 3.3e-05 40_[+2]_72 chr3R:10330866-10330986 3.3e-05 59_[+2]_53 chr2R:21646512-21646632 4.7e-05 34_[+2]_78 chr3L:11365177-11365297 4.7e-05 18_[+2]_94 chr3L:14002417-14002537 4.7e-05 55_[+2]_57 chr2L:640795-640915 4.7e-05 60_[+2]_52 chr2L:20800727-20800847 6e-05 91_[+2]_21 chr3R:5668861-5668981 6e-05 44_[+2]_68 chr2R:12588642-12588762 7.3e-05 112_[+2] chr3R:21606413-21606533 7.3e-05 24_[+2]_88 chr3R:5670463-5670583 8.8e-05 109_[+2]_3 chrX:6858550-6858670 8.8e-05 46_[+2]_66 chr2L:72938-73058 0.00011 106_[+2]_6 chr3R:13685126-13685246 0.00012 46_[+2]_66 chr3R:24581983-24582103 0.00014 78_[+2]_34 chr2R:12985812-12985932 0.00014 36_[+2]_76 chrX:12753629-12753749 0.00014 37_[+2]_75 chr2R:9712862-9712982 0.00015 15_[+2]_97 chrX:18863884-18864004 0.00017 31_[+2]_81 chr3R:10331419-10331539 0.00017 9_[+2]_103 chr3R:13684814-13684934 0.00018 99_[+2]_13 chrX:12575017-12575137 0.00022 42_[+2]_70 chrX:11817817-11817937 0.00022 68_[+2]_44 chrX:16593665-16593785 0.00022 105_[+2]_7 chr3R:30804655-30804775 0.00022 58_[+2]_54 chr2R:8067978-8068098 0.00025 40_[+2]_72 chr3R:30057927-30058047 0.00025 34_[+2]_78 chr3R:24649946-24650066 0.00027 106_[+2]_6 chr3R:6406966-6407086 0.00027 42_[+2]_70 chr3R:28332834-28332954 0.00027 112_[+2] chr2R:15092621-15092741 0.00027 100_[+2]_12 chr3R:24651228-24651348 0.00034 11_[+2]_101 chr3R:16232408-16232528 0.00044 81_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=57 chrX:12754034-12754154 ( 85) GTGTGTGT 1 chrX:10815730-10815850 ( 108) GTGTGTGT 1 chr2R:10564946-10565066 ( 33) GTGTGTGT 1 chr3R:31748126-31748246 ( 80) GTGTGTGT 1 chr2R:16594237-16594357 ( 105) GTGTGTGT 1 chrX:6868387-6868507 ( 45) GTGTGTGT 1 chr2L:13165915-13166035 ( 37) GTGTGTGT 1 chr3R:24231283-24231403 ( 88) GTGTGTGT 1 chr2R:22680853-22680973 ( 74) GTGTGTGT 1 chr3L:11789196-11789316 ( 9) GTGTGTGT 1 chr3R:10761661-10761781 ( 73) GTGTGTGT 1 chr3R:4804529-4804649 ( 4) GTGTGTGT 1 chr3L:10516476-10516596 ( 53) GTGTGTGT 1 chrX:17077255-17077375 ( 33) GTGTGTGT 1 chr3L:2635067-2635187 ( 100) GTGTGTGT 1 chr3L:14003395-14003515 ( 36) GTGTGTGT 1 chr3R:30058599-30058719 ( 108) GTGTGTGT 1 chr3L:9105663-9105783 ( 97) GTGTGTGT 1 chrX:17709968-17710088 ( 46) GTGCGTGT 1 chr3L:5769253-5769373 ( 95) GTGCGTGT 1 chrX:12575707-12575827 ( 55) GTGCGTGT 1 chrX:10602057-10602177 ( 68) GTGCGTGT 1 chrX:6859363-6859483 ( 110) GTGCGTGT 1 chr3R:10761426-10761546 ( 64) GTGTGTGC 1 chrX:3773098-3773218 ( 41) GTGTGTGC 1 chr3R:10330866-10330986 ( 60) GTGTGTGC 1 chr2R:21646512-21646632 ( 35) GTGTGAGT 1 chr3L:11365177-11365297 ( 19) GTGTGAGT 1 chr3L:14002417-14002537 ( 56) GTGTGAGT 1 chr2L:640795-640915 ( 61) GTGTGAGT 1 chr2L:20800727-20800847 ( 92) GTGTGTCT 1 chr3R:5668861-5668981 ( 45) GTGTGTCT 1 chr2R:12588642-12588762 ( 113) CTGTGTGT 1 chr3R:21606413-21606533 ( 25) CTGTGTGT 1 chr3R:5670463-5670583 ( 110) GTGAGTGT 1 chrX:6858550-6858670 ( 47) GTGAGTGT 1 chr2L:72938-73058 ( 107) GTGTTTGT 1 chr3R:13685126-13685246 ( 47) GTGCGAGT 1 chr3R:24581983-24582103 ( 79) GTATGTGT 1 chr2R:12985812-12985932 ( 37) GTATGTGT 1 chrX:12753629-12753749 ( 38) GTATGTGT 1 chr2R:9712862-9712982 ( 16) GTGCGTCT 1 chrX:18863884-18864004 ( 32) GTGTGAGC 1 chr3R:10331419-10331539 ( 10) GTGGGTGT 1 chr3R:13684814-13684934 ( 100) GTGTGCGT 1 chrX:12575017-12575137 ( 43) GTGTATGT 1 chrX:11817817-11817937 ( 69) GTTTGTGT 1 chrX:16593665-16593785 ( 106) GTTTGTGT 1 chr3R:30804655-30804775 ( 59) GTGTATGT 1 chr2R:8067978-8068098 ( 41) GTGTGACT 1 chr3R:30057927-30058047 ( 35) GTGTGACT 1 chr3R:24649946-24650066 ( 107) CTGTGTGC 1 chr3R:6406966-6407086 ( 43) GTGCTTGT 1 chr3R:28332834-28332954 ( 113) GTGCTTGT 1 chr2R:15092621-15092741 ( 101) CTGTGTGC 1 chr3R:24651228-24651348 ( 12) GTGTTTGC 1 chr3R:16232408-16232528 ( 82) GTGAGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1878 E= 9.5e-014 -1248 -152 216 -1248 -1248 -1248 -1248 177 -251 -1248 214 -306 -251 -35 -356 140 -309 -1248 211 -206 -109 -351 -1248 152 -1248 -93 211 -1248 -1248 -71 -1248 158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 9.5e-014 0.000000 0.070175 0.929825 0.000000 0.000000 0.000000 0.000000 1.000000 0.052632 0.000000 0.912281 0.035088 0.052632 0.157895 0.017544 0.771930 0.035088 0.000000 0.894737 0.070175 0.140351 0.017544 0.000000 0.842105 0.000000 0.105263 0.894737 0.000000 0.000000 0.122807 0.000000 0.877193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-2 regular expression -------------------------------------------------------------------------------- GTGTGTGT -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCACRCW MEME-3 width = 8 sites = 30 llr = 266 E-value = 5.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::7:7:6 pos.-specific C 5:a:a:a: probability G 3a:3:3:: matrix T 2::::::4 bits 2.3 ** * * 2.1 ** * * 1.9 ** * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.2 ** * * (12.8 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCACACA consensus G G G T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10815730-10815850 23 9.08e-06 cacaaatgca cgcacaca caAGGGCATG chr2L:11807683-11807803 58 9.08e-06 ctctcgcact cgcacaca aaaacactca chr2R:15129644-15129764 27 9.08e-06 cacacacaca cgcacaca GCGAGAAATC chrX:17710326-17710446 14 9.08e-06 CGGGCACACA CGCACACA AACATAAAAA chr3R:24221675-24221795 58 9.08e-06 aagacgcaca cgcacaca GATGGTCAAA chr2L:20735493-20735613 78 9.08e-06 TAGGGGCCTC CGCACACA TGTGCATCCA chr3R:5670463-5670583 8 9.08e-06 cacaccg cgcacaca accaggcaac chr3L:2636089-2636209 64 9.08e-06 ggcacacaca cgcacaca gggacaaaca chr3L:21026659-21026779 4 1.54e-05 ACA CGCACGCA AATATGTAGA chrX:18864218-18864338 68 1.54e-05 AATCGACAAG cgcacgca tgcacacaca chr2L:16351871-16351991 32 3.06e-05 cacacacgca cgcacacT TGTACGGATT chr2L:14689027-14689147 23 4.00e-05 TCTTAGCTTT GGCACACA TGCACACAAT chr2L:11807373-11807493 97 4.00e-05 ACAAAACACA GGCACACA TCTGAGCACA chr2R:14604198-14604318 106 5.06e-05 TTTAGAAAGA CGCACGCT TCAACAG chrX:10806586-10806706 76 5.68e-05 CAAACACTCA CGCGCACT TATAATATTT chr3R:6406268-6406388 110 7.90e-05 TCGCGGAATG GGCACACT GAA chr3L:10516476-10516596 112 7.90e-05 ATTCATTCAC GGCGCACA T chrX:13753899-13754019 86 7.90e-05 CGAACTATTA GGCGCACA TGAATTGCAT chrX:12754034-12754154 26 9.66e-05 CTTTGTTCAC CGCGCGCT CAATTCACAG chr3R:15803968-15804088 7 9.66e-05 AAGAAT TGCACACA ATTTACTCAA chr2L:13165915-13166035 54 9.66e-05 TGCGCGTGTG CGCGCGCT TGGGTTCGGA chrX:11817817-11817937 88 9.66e-05 GTTGTTTTTG CGCGCGCT CTGCGGAACG chr3R:13685126-13685246 83 9.66e-05 GCGCGTATTC TGCACACA TTGTCATGCA chr2R:15311442-15311562 66 1.08e-04 ATCGTGGGTG GGCGCGCA TCTCTACTGT chrX:17077255-17077375 10 1.08e-04 ACCTGCCAA GGCACGCT CGCTtgtatg chr3R:12460120-12460240 80 1.23e-04 GTTTACAGTG TGCACGCA TTTGCTTAAG chr2L:21156278-21156398 20 1.45e-04 AATCGATGCT TGCGCACA TTTCAACACT chrX:12736260-12736380 16 1.45e-04 CAAAAGTGCC TGCACACT TTAGTGCGAG chr2R:20997629-20997749 44 1.45e-04 CCTCTCCCGC TGCACACT CCCACTATTC chrX:6868387-6868507 3 1.50e-04 CC GGCGCGCT GCGCCAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10815730-10815850 9.1e-06 22_[+3]_90 chr2L:11807683-11807803 9.1e-06 57_[+3]_55 chr2R:15129644-15129764 9.1e-06 26_[+3]_86 chrX:17710326-17710446 9.1e-06 13_[+3]_99 chr3R:24221675-24221795 9.1e-06 57_[+3]_55 chr2L:20735493-20735613 9.1e-06 77_[+3]_35 chr3R:5670463-5670583 9.1e-06 7_[+3]_105 chr3L:2636089-2636209 9.1e-06 63_[+3]_49 chr3L:21026659-21026779 1.5e-05 3_[+3]_109 chrX:18864218-18864338 1.5e-05 67_[+3]_45 chr2L:16351871-16351991 3.1e-05 31_[+3]_81 chr2L:14689027-14689147 4e-05 22_[+3]_90 chr2L:11807373-11807493 4e-05 96_[+3]_16 chr2R:14604198-14604318 5.1e-05 105_[+3]_7 chrX:10806586-10806706 5.7e-05 75_[+3]_37 chr3R:6406268-6406388 7.9e-05 109_[+3]_3 chr3L:10516476-10516596 7.9e-05 111_[+3]_1 chrX:13753899-13754019 7.9e-05 85_[+3]_27 chrX:12754034-12754154 9.7e-05 25_[+3]_87 chr3R:15803968-15804088 9.7e-05 6_[+3]_106 chr2L:13165915-13166035 9.7e-05 53_[+3]_59 chrX:11817817-11817937 9.7e-05 87_[+3]_25 chr3R:13685126-13685246 9.7e-05 82_[+3]_30 chr2R:15311442-15311562 0.00011 65_[+3]_47 chrX:17077255-17077375 0.00011 9_[+3]_103 chr3R:12460120-12460240 0.00012 79_[+3]_33 chr2L:21156278-21156398 0.00015 19_[+3]_93 chrX:12736260-12736380 0.00015 15_[+3]_97 chr2R:20997629-20997749 0.00015 43_[+3]_69 chrX:6868387-6868507 0.00015 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCACRCW width=8 seqs=30 chrX:10815730-10815850 ( 23) CGCACACA 1 chr2L:11807683-11807803 ( 58) CGCACACA 1 chr2R:15129644-15129764 ( 27) CGCACACA 1 chrX:17710326-17710446 ( 14) CGCACACA 1 chr3R:24221675-24221795 ( 58) CGCACACA 1 chr2L:20735493-20735613 ( 78) CGCACACA 1 chr3R:5670463-5670583 ( 8) CGCACACA 1 chr3L:2636089-2636209 ( 64) CGCACACA 1 chr3L:21026659-21026779 ( 4) CGCACGCA 1 chrX:18864218-18864338 ( 68) CGCACGCA 1 chr2L:16351871-16351991 ( 32) CGCACACT 1 chr2L:14689027-14689147 ( 23) GGCACACA 1 chr2L:11807373-11807493 ( 97) GGCACACA 1 chr2R:14604198-14604318 ( 106) CGCACGCT 1 chrX:10806586-10806706 ( 76) CGCGCACT 1 chr3R:6406268-6406388 ( 110) GGCACACT 1 chr3L:10516476-10516596 ( 112) GGCGCACA 1 chrX:13753899-13754019 ( 86) GGCGCACA 1 chrX:12754034-12754154 ( 26) CGCGCGCT 1 chr3R:15803968-15804088 ( 7) TGCACACA 1 chr2L:13165915-13166035 ( 54) CGCGCGCT 1 chrX:11817817-11817937 ( 88) CGCGCGCT 1 chr3R:13685126-13685246 ( 83) TGCACACA 1 chr2R:15311442-15311562 ( 66) GGCGCGCA 1 chrX:17077255-17077375 ( 10) GGCACGCT 1 chr3R:12460120-12460240 ( 80) TGCACGCA 1 chr2L:21156278-21156398 ( 20) TGCGCACA 1 chrX:12736260-12736380 ( 16) TGCACACT 1 chr2R:20997629-20997749 ( 44) TGCACACT 1 chrX:6868387-6868507 ( 3) GGCGCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 5.2e+001 -1155 141 36 -55 -1155 -1155 227 -1155 -1155 232 -1155 -1155 123 -1155 53 -1155 -1155 232 -1155 -1155 116 -1155 68 -1155 -1155 232 -1155 -1155 108 -1155 -1155 32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.2e+001 0.000000 0.533333 0.266667 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.633333 0.000000 0.000000 0.366667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCACRCW MEME-3 regular expression -------------------------------------------------------------------------------- [CGT]GC[AG]C[AG]C[AT] -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCCC MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a:aaa probability G :::::::: matrix T a:a:a::: bits 2.3 * * *** 2.1 * * *** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19125898-19126018 84 8.25e-06 TCTGTATCTA TCTCTCCC AGTAAAGCTA chr3R:22726666-22726786 99 8.25e-06 ACAGATAGTG TCTCTCCC TCACTGTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19125898-19126018 8.3e-06 83_[+4]_29 chr3R:22726666-22726786 8.3e-06 98_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCCC width=8 seqs=2 chr2R:19125898-19126018 ( 84) TCTCTCCC 1 chr3R:22726666-22726786 ( 99) TCTCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.3e+005 -765 -765 -765 177 -765 231 -765 -765 -765 -765 -765 177 -765 231 -765 -765 -765 -765 -765 177 -765 231 -765 -765 -765 231 -765 -765 -765 231 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCCC MEME-4 regular expression -------------------------------------------------------------------------------- TCTCTCCC -------------------------------------------------------------------------------- Time 25.86 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCAGC MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:a:a::a probability G :a:a::a: matrix T :::::::: bits 2.3 ***** ** 2.1 ***** ** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11807683-11807803 17 4.39e-06 TGTGGATGTG CGCGCAGC Tcatacacaa chrX:18864218-18864338 16 4.39e-06 acaaacacaa cgcgcagc gcatatacac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11807683-11807803 4.4e-06 16_[+5]_96 chrX:18864218-18864338 4.4e-06 15_[+5]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCAGC width=8 seqs=2 chr2L:11807683-11807803 ( 17) CGCGCAGC 1 chrX:18864218-18864338 ( 16) CGCGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.0e+005 -765 231 -765 -765 -765 -765 226 -765 -765 231 -765 -765 -765 -765 226 -765 -765 231 -765 -765 174 -765 -765 -765 -765 -765 226 -765 -765 231 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCAGC MEME-5 regular expression -------------------------------------------------------------------------------- CGCGCAGC -------------------------------------------------------------------------------- Time 31.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13753899-13754019 4.88e-02 85_[+3(7.90e-05)]_27 chr3R:10331931-10332051 5.77e-01 120 chr3L:9105663-9105783 3.43e-02 45_[+2(1.38e-05)]_43_[+2(1.38e-05)]_\ 16 chr3R:30600028-30600148 6.00e-02 120 chr2R:12980240-12980360 4.35e-02 120 chr2R:10432942-10433062 5.12e-01 120 chrX:6859363-6859483 4.76e-02 109_[+2(2.33e-05)]_3 chrX:10803799-10803919 7.20e-01 120 chr2L:1666951-1667071 2.78e-01 120 chr2L:16351871-16351991 1.17e-03 18_[+1(1.30e-05)]_1_[+3(1.54e-05)]_\ 85 chr3L:20400363-20400483 2.35e-01 120 chr2R:21712723-21712843 1.00e+00 120 chr2R:14484182-14484302 8.21e-02 120 chr2L:247221-247341 9.40e-01 120 chr2R:13133479-13133599 6.62e-01 120 chr3R:30804655-30804775 6.20e-01 120 chr3R:22043413-22043533 5.32e-01 120 chr2L:15745174-15745294 1.39e-02 120 chr3L:3765497-3765617 8.45e-01 120 chr3R:640508-640628 5.17e-01 120 chr2R:21709971-21710091 2.90e-02 6_[+1(8.32e-05)]_106 chrX:4687501-4687621 9.95e-01 120 chr2L:9494542-9494662 3.77e-01 120 chr3R:567339-567459 7.67e-01 120 chr3R:23155695-23155815 3.53e-01 120 chrX:13754222-13754342 8.89e-01 120 chr2L:21108003-21108123 5.30e-01 120 chr3L:20028574-20028694 9.66e-01 120 chrX:3686142-3686262 6.75e-01 120 chr2L:640795-640915 2.50e-01 60_[+2(4.68e-05)]_52 chr2R:15092621-15092741 6.71e-02 120 chr3L:2765795-2765915 9.47e-01 120 chrX:4909807-4909927 3.56e-02 120 chrX:5918206-5918326 2.00e-01 120 chr2L:16350851-16350971 5.17e-02 120 chrX:4687214-4687334 1.00e+00 120 chr2L:16703194-16703314 5.22e-01 120 chrX:6858550-6858670 6.49e-02 46_[+2(8.75e-05)]_66 chrX:2013380-2013500 3.50e-01 120 chrX:8559223-8559343 6.63e-01 120 chr2R:9094657-9094777 9.71e-01 120 chr3R:12627079-12627199 1.11e-01 120 chr3L:4103255-4103375 8.27e-01 120 chr3R:5670178-5670298 7.61e-01 120 chr2R:17436081-17436201 8.61e-01 120 chr3R:16230893-16231013 1.46e-01 9_[+1(9.67e-05)]_103 chrX:2010891-2011011 7.55e-01 120 chr3R:30058599-30058719 1.06e-01 95_[+2(3.27e-05)]_2_[+2(1.38e-05)]_\ 7 chr3R:10330866-10330986 8.04e-02 36_[+2(4.68e-05)]_15_[+2(3.27e-05)]_\ 53 chrX:17709633-17709753 1.67e-02 61_[+1(5.06e-05)]_51 chr3R:24047716-24047836 1.80e-01 120 chrX:3446558-3446678 5.00e-01 120 chrX:12575377-12575497 2.22e-01 120 chr2L:21108419-21108539 9.21e-01 120 chrX:10790566-10790686 9.31e-01 120 chr2R:10569417-10569537 1.79e-03 54_[+4(8.25e-06)]_58 chr3L:2636089-2636209 1.47e-04 27_[+1(1.30e-05)]_28_[+3(9.08e-06)]_\ 49 chr3R:10108897-10109017 4.13e-01 120 chr3R:21606413-21606533 2.64e-01 24_[+2(7.35e-05)]_88 chr3R:5670463-5670583 5.15e-06 7_[+3(9.08e-06)]_19_[+1(6.34e-05)]_\ 8_[+1(1.30e-05)]_51_[+2(8.75e-05)]_3 chr2R:12262195-12262315 6.26e-01 120 chr3L:1351107-1351227 9.49e-01 120 chr2L:16728107-16728227 8.75e-01 120 chrX:6857626-6857746 7.72e-01 120 chr3L:14003395-14003515 5.67e-03 33_[+2(1.38e-05)]_79 chrX:7066668-7066788 9.38e-01 120 chr2L:248556-248676 8.92e-01 120 chr3L:20028970-20029090 8.89e-01 120 chrX:13753405-13753525 6.44e-01 120 chr3L:2635067-2635187 1.83e-01 99_[+2(1.38e-05)]_13 chrX:17077255-17077375 2.75e-03 26_[+2(1.38e-05)]_[+2(1.38e-05)]_35_\ [+2(1.38e-05)]_35 chr3R:19847648-19847768 1.58e-01 120 chr2L:19362528-19362648 7.53e-01 120 chr3L:19909735-19909855 1.08e-01 120 chrX:10602057-10602177 5.98e-02 67_[+2(2.33e-05)]_45 chr2L:19362811-19362931 1.59e-02 66_[+1(6.34e-05)]_46 chrX:10742498-10742618 6.52e-01 120 chr3L:20401258-20401378 4.42e-01 120 chrX:12754839-12754959 8.49e-01 120 chr3R:5668861-5668981 8.73e-02 44_[+2(6.01e-05)]_68 chr3R:28332834-28332954 2.74e-01 120 chr3R:24220981-24221101 1.51e-03 9_[+1(2.21e-05)]_103 chr2L:11805930-11806050 8.66e-01 120 chr2R:12261057-12261177 9.53e-04 29_[+1(1.30e-05)]_83 chrX:16593665-16593785 3.06e-01 120 chr2L:10396605-10396725 6.54e-01 120 chrX:18479828-18479948 9.95e-01 120 chrX:10326465-10326585 8.47e-01 120 chr3L:9855416-9855536 7.34e-01 120 chr3R:13685126-13685246 2.72e-04 28_[+1(2.21e-05)]_46_[+3(9.66e-05)]_\ 30 chr2L:16352259-16352379 8.24e-01 120 chr2R:14962686-14962806 5.78e-02 120 chrX:18864218-18864338 1.06e-05 15_[+5(4.39e-06)]_6_[+1(1.30e-05)]_\ 30_[+3(1.54e-05)]_3_[+1(1.30e-05)]_34 chr2R:9712862-9712982 2.62e-01 120 chr2L:20800727-20800847 8.37e-03 91_[+2(6.01e-05)]_21 chr3R:22726666-22726786 4.39e-02 98_[+4(8.25e-06)]_14 chr2R:20997629-20997749 4.89e-04 33_[+4(6.81e-05)]_79 chr3L:10516476-10516596 5.42e-04 48_[+2(1.38e-05)]_[+2(1.38e-05)]_47_\ [+3(7.90e-05)]_1 chr2L:11806382-11806502 5.79e-01 120 chr3R:24565168-24565288 9.12e-01 120 chr3R:4804529-4804649 9.69e-02 3_[+2(1.38e-05)]_109 chr2L:20735493-20735613 2.98e-03 77_[+3(9.08e-06)]_35 chr3L:2766093-2766213 1.33e-04 104_[+3(9.08e-06)]_8 chr3R:10761661-10761781 1.77e-01 72_[+2(1.38e-05)]_[+2(1.38e-05)]_32 chr2L:12974515-12974635 7.41e-02 120 chr2L:20734688-20734808 9.21e-01 120 chrX:4937848-4937968 9.02e-01 120 chrX:12739095-12739215 7.85e-01 120 chr3R:21592080-21592200 4.71e-01 120 chr3R:24221675-24221795 2.18e-03 20_[+1(6.34e-05)]_4_[+3(9.08e-06)]_\ 17_[+3(9.08e-06)]_55 chr3L:11789196-11789316 2.16e-02 6_[+2(1.38e-05)]_106 chr2L:21156507-21156627 8.96e-01 120 chr2L:19547684-19547804 6.06e-01 120 chr3L:5184586-5184706 3.74e-04 13_[+3(9.08e-06)]_99 chr3R:25472164-25472284 5.60e-01 120 chr3R:10133897-10134017 3.44e-01 120 chr2L:11807373-11807493 4.31e-02 96_[+3(4.00e-05)]_16 chr3L:2632802-2632922 7.47e-01 120 chrX:2010432-2010552 1.25e-01 120 chr2R:19125898-19126018 2.27e-02 83_[+4(8.25e-06)]_29 chr3R:9236120-9236240 4.35e-04 26_[+3(9.08e-06)]_86 chrX:12575707-12575827 1.09e-01 54_[+2(2.33e-05)]_58 chr2R:12338062-12338182 8.73e-01 120 chrX:10806586-10806706 1.17e-03 57_[+3(3.06e-05)]_10_[+3(5.68e-05)]_\ 37 chr3L:14002417-14002537 2.03e-01 55_[+2(4.68e-05)]_57 chrX:17710326-17710446 5.35e-04 13_[+3(9.08e-06)]_86_[+3(9.08e-06)]_\ 5 chr2R:6168436-6168556 9.68e-03 11_[+1(2.21e-05)]_101 chr3L:20006285-20006405 6.50e-01 120 chrX:3773098-3773218 2.96e-01 40_[+2(3.27e-05)]_72 chr3R:13684814-13684934 4.74e-01 120 chr2R:12985611-12985731 2.68e-02 18_[+1(1.30e-05)]_94 chr2R:22680853-22680973 8.82e-02 73_[+2(1.38e-05)]_39 chr3L:11364687-11364807 5.59e-01 120 chr3R:6406268-6406388 1.50e-01 109_[+3(7.90e-05)]_3 chrX:5880205-5880325 3.67e-03 43_[+1(1.30e-05)]_2_[+1(1.30e-05)]_\ 59 chrX:11817817-11817937 3.80e-03 87_[+3(9.66e-05)]_25 chrX:11154298-11154418 1.07e-01 120 chrX:11369449-11369569 1.42e-01 32_[+1(8.32e-05)]_80 chr2R:6636074-6636194 9.59e-01 120 chr3R:24234209-24234329 7.31e-01 120 chr2R:12984455-12984575 4.67e-01 120 chrX:3965228-3965348 1.21e-01 120 chr3R:24231283-24231403 2.37e-02 81_[+2(1.38e-05)]_[+2(1.38e-05)]_\ [+2(9.40e-05)]_4_[+2(1.38e-05)]_3 chr3L:1329954-1330074 1.41e-01 120 chr3R:16231410-16231530 3.70e-01 120 chr2L:10396310-10396430 9.99e-01 120 chrX:22433021-22433141 9.54e-01 120 chrX:12736260-12736380 1.05e-01 120 chr3R:16232408-16232528 4.36e-01 120 chr2L:23512772-23512892 1.00e+00 120 chr2L:14689027-14689147 9.04e-04 22_[+3(4.00e-05)]_[+3(9.66e-05)]_13_\ [+1(1.30e-05)]_61 chr3L:14003715-14003835 1.13e-01 120 chrX:6856467-6856587 5.81e-02 64_[+1(5.06e-05)]_48 chrX:7710044-7710164 3.16e-01 120 chr2L:13165915-13166035 3.23e-04 36_[+2(1.38e-05)]_9_[+3(9.66e-05)]_\ 59 chrX:12753629-12753749 3.39e-05 27_[+1(1.30e-05)]_85 chr3L:11365177-11365297 4.60e-02 18_[+2(4.68e-05)]_94 chr3R:21107896-21108016 6.55e-01 120 chrX:12751762-12751882 5.43e-01 120 chr3R:10761426-10761546 1.93e-02 63_[+2(3.27e-05)]_49 chr3R:18398585-18398705 1.82e-03 6_[+1(1.30e-05)]_106 chrX:8560215-8560335 9.86e-01 120 chrX:2633838-2633958 1.18e-01 120 chr3L:2553279-2553399 2.00e-02 27_[+4(6.81e-05)]_2_[+4(8.25e-06)]_\ 75 chr3L:1534280-1534400 9.91e-01 120 chr2R:12261381-12261501 1.16e-04 31_[+5(6.49e-05)]_33_[+1(6.34e-05)]_\ 40 chr2R:14604198-14604318 1.37e-02 105_[+3(5.06e-05)]_7 chr2R:9692463-9692583 8.55e-01 120 chr2R:10604170-10604290 1.14e-03 12_[+1(2.21e-05)]_100 chr3L:1802749-1802869 3.05e-01 120 chr2R:15129644-15129764 1.81e-05 15_[+1(1.30e-05)]_3_[+3(9.08e-06)]_\ 86 chr3R:24585451-24585571 6.04e-01 120 chrX:11368328-11368448 5.07e-01 120 chr2R:12985812-12985932 1.90e-01 120 chr3R:4806165-4806285 2.99e-01 120 chr3L:5769253-5769373 4.60e-02 94_[+2(2.33e-05)]_18 chrX:5689737-5689857 9.01e-01 120 chr3R:12460120-12460240 9.03e-02 120 chr3L:1802981-1803101 7.90e-01 120 chrX:12012288-12012408 2.05e-01 120 chrX:11368107-11368227 7.13e-01 120 chrX:6868387-6868507 1.84e-05 4_[+5(1.47e-05)]_32_[+2(1.38e-05)]_\ 68 chr3L:14002988-14003108 1.38e-01 120 chr2R:16594237-16594357 6.51e-02 104_[+2(1.38e-05)]_8 chr3R:10331419-10331539 2.16e-01 120 chr3R:23157382-23157502 3.62e-01 120 chr3R:14575702-14575822 7.17e-01 120 chr3R:13684276-13684396 5.52e-01 120 chr3R:15803968-15804088 4.44e-02 6_[+3(9.66e-05)]_106 chr3R:24581983-24582103 5.25e-01 120 chr2R:13133032-13133152 5.84e-02 83_[+1(5.06e-05)]_29 chr3R:24651228-24651348 2.55e-04 80_[+1(1.30e-05)]_32 chr3R:24047381-24047501 7.86e-01 120 chr2R:12588642-12588762 4.65e-03 112_[+2(7.35e-05)] chr3R:30057927-30058047 5.85e-02 120 chr3R:6406966-6407086 5.94e-02 51_[+5(6.49e-05)]_61 chrX:6862801-6862921 5.70e-01 120 chr3R:30794878-30794998 4.23e-01 120 chr3L:20403429-20403549 9.67e-01 120 chr3L:21026659-21026779 4.14e-05 3_[+3(1.54e-05)]_51_[+1(1.30e-05)]_\ 50 chr3R:31748126-31748246 4.27e-05 13_[+1(3.12e-05)]_58_[+2(1.38e-05)]_\ 33 chr3R:24649946-24650066 5.64e-01 120 chr3L:20518536-20518656 8.98e-01 120 chr3R:21064577-21064697 8.88e-01 120 chr3L:3811070-3811190 9.79e-01 120 chr2R:12593363-12593483 1.00e+00 120 chr2R:13935313-13935433 9.85e-01 120 chr2L:11807683-11807803 4.06e-07 16_[+5(4.39e-06)]_10_[+1(2.21e-05)]_\ 15_[+3(9.08e-06)]_7_[+1(6.34e-05)]_40 chr2R:21713431-21713551 8.79e-01 120 chr2R:10564946-10565066 1.54e-01 32_[+2(1.38e-05)]_2_[+2(2.33e-05)]_\ 70 chr2R:8067978-8068098 2.67e-01 120 chr3R:29229124-29229244 7.49e-01 120 chr2L:2236910-2237030 2.23e-01 120 chrX:18863884-18864004 1.91e-01 120 chr3L:5768757-5768877 3.11e-01 120 chr3L:14002046-14002166 9.42e-02 120 chr3R:31669331-31669451 8.78e-02 120 chr3R:6406579-6406699 9.26e-01 120 chrX:17709968-17710088 2.05e-02 45_[+2(2.33e-05)]_67 chr2L:72938-73058 2.18e-01 120 chrX:10815730-10815850 7.05e-06 7_[+1(1.30e-05)]_7_[+3(9.08e-06)]_\ 77_[+2(1.38e-05)]_5 chr2L:16727779-16727899 8.88e-01 120 chrX:13404028-13404148 5.74e-01 120 chr2L:16534009-16534129 6.29e-01 120 chr3R:14904006-14904126 2.41e-01 120 chr2L:21156278-21156398 2.24e-01 120 chr3R:10331197-10331317 6.86e-01 120 chr2R:23697952-23698072 9.77e-01 120 chr2R:10429700-10429820 9.97e-01 120 chrX:17077752-17077872 7.91e-01 120 chrX:17887340-17887460 8.47e-01 120 chrX:19497006-19497126 9.79e-02 120 chr3R:9928617-9928737 4.76e-04 83_[+4(6.81e-05)]_29 chr3L:20403733-20403853 9.13e-01 120 chr2R:15311442-15311562 4.54e-03 67_[+5(6.49e-05)]_45 chr2R:9969133-9969253 1.70e-01 120 chr3L:9366860-9366980 9.57e-02 120 chr3R:29772199-29772319 1.85e-01 47_[+5(6.49e-05)]_65 chr3R:12425989-12426109 9.38e-01 120 chr3R:24583078-24583198 2.65e-01 120 chr3R:29772568-29772688 8.37e-01 120 chr2R:21646512-21646632 2.00e-01 34_[+2(4.68e-05)]_21_[+2(6.01e-05)]_\ 49 chr3L:14004083-14004203 4.17e-01 120 chr3L:20402710-20402830 4.59e-01 120 chr2R:14576182-14576302 8.05e-01 120 chr2R:10566921-10567041 3.26e-03 13_[+1(1.30e-05)]_[+1(1.30e-05)]_91 chrX:12575017-12575137 5.95e-02 120 chrX:12754034-12754154 5.25e-03 25_[+3(9.66e-05)]_47_[+2(1.38e-05)]_\ 32 chrX:12750881-12751001 4.23e-02 58_[+5(6.49e-05)]_54 chr3L:10515867-10515987 8.60e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************