******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pros.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:11366454-11366574 1.0000 120 chrX:276708-276828 1.0000 120 chr3R:26870604-26870724 1.0000 120 chr2L:13244898-13245018 1.0000 120 chrX:525743-525863 1.0000 120 chrX:10940727-10940847 1.0000 120 chr3L:19564401-19564521 1.0000 120 chr3R:9000882-9001002 1.0000 120 chr3L:2819833-2819953 1.0000 120 chr3R:8209966-8210086 1.0000 120 chrX:10808865-10808985 1.0000 120 chr3L:16172484-16172604 1.0000 120 chr3R:29893430-29893550 1.0000 120 chr3R:4954580-4954700 1.0000 120 chr3R:24556442-24556562 1.0000 120 chr2R:8246938-8247058 1.0000 120 chr2R:8233323-8233443 1.0000 120 chr2L:14120829-14120949 1.0000 120 chrX:15147208-15147328 1.0000 120 chr2L:21630447-21630567 1.0000 120 chr3L:4464047-4464167 1.0000 120 chr3L:8363400-8363520 1.0000 120 chr3L:14945765-14945885 1.0000 120 chr3R:6861895-6862015 1.0000 120 chrX:1593800-1593920 1.0000 120 chr2L:21233564-21233684 1.0000 120 chr2R:17083608-17083728 1.0000 120 chr3L:6701088-6701208 1.0000 120 chrX:12927750-12927870 1.0000 120 chr3L:4357126-4357246 1.0000 120 chr2L:7174504-7174624 1.0000 120 chr2L:7272591-7272711 1.0000 120 chr3R:25437514-25437634 1.0000 120 chr4:481356-481476 1.0000 120 chr2L:8612370-8612490 1.0000 120 chr3L:2860570-2860690 1.0000 120 chr2L:2430350-2430470 1.0000 120 chrX:19364179-19364299 1.0000 120 chr3L:375809-375929 1.0000 120 chrX:12212905-12213025 1.0000 120 chr2L:4376521-4376641 1.0000 120 chr3R:4524317-4524437 1.0000 120 chr2L:16310144-16310264 1.0000 120 chrX:7082519-7082639 1.0000 120 chr3R:6806106-6806226 1.0000 120 chr3L:14170246-14170366 1.0000 120 chr3L:8560776-8560896 1.0000 120 chr2R:10833080-10833200 1.0000 120 chr3L:15047745-15047865 1.0000 120 chr2L:16683811-16683931 1.0000 120 chr3R:26952964-26953084 1.0000 120 chr2L:20802783-20802903 1.0000 120 chr3L:6812947-6813067 1.0000 120 chr3L:10809392-10809512 1.0000 120 chrX:10829869-10829989 1.0000 120 chr3R:22162188-22162308 1.0000 120 chr2L:1441146-1441266 1.0000 120 chr4:393551-393671 1.0000 120 chr3L:10684631-10684751 1.0000 120 chr3L:4441719-4441839 1.0000 120 chr3R:11345757-11345877 1.0000 120 chrX:1109419-1109539 1.0000 120 chr2R:11718086-11718206 1.0000 120 chr3L:13647046-13647166 1.0000 120 chr3R:8702474-8702594 1.0000 120 chr2L:2894230-2894350 1.0000 120 chr2L:15735948-15736068 1.0000 120 chr3R:7013386-7013506 1.0000 120 chr2R:13724356-13724476 1.0000 120 chr2R:9549567-9549687 1.0000 120 chr2L:1614518-1614638 1.0000 120 chr2L:182354-182474 1.0000 120 chrX:464047-464167 1.0000 120 chr2R:15332822-15332942 1.0000 120 chr3L:3972044-3972164 1.0000 120 chrX:595858-595978 1.0000 120 chr3L:18988199-18988319 1.0000 120 chr3L:4357333-4357453 1.0000 120 chr2R:17143617-17143737 1.0000 120 chr3L:154104-154224 1.0000 120 chr3R:8680664-8680784 1.0000 120 chr2R:14003264-14003384 1.0000 120 chrX:9995125-9995245 1.0000 120 chr2R:16846358-16846478 1.0000 120 chr2L:21233769-21233889 1.0000 120 chr2L:17584074-17584194 1.0000 120 chr2R:9795157-9795277 1.0000 120 chr2L:6851064-6851184 1.0000 120 chrX:19018535-19018655 1.0000 120 chr2L:13212063-13212183 1.0000 120 chr3R:9029495-9029615 1.0000 120 chr2L:4349785-4349905 1.0000 120 chr2L:19829508-19829628 1.0000 120 chrX:660024-660144 1.0000 120 chr3R:22712364-22712484 1.0000 120 chr3R:25174668-25174788 1.0000 120 chr3R:21340968-21341088 1.0000 120 chr3L:537641-537761 1.0000 120 chrX:2410951-2411071 1.0000 120 chr2L:9704514-9704634 1.0000 120 chr3R:9500742-9500862 1.0000 120 chr3L:10841062-10841182 1.0000 120 chr3R:6866864-6866984 1.0000 120 chr2R:13000735-13000855 1.0000 120 chrX:10823952-10824072 1.0000 120 chrX:14481369-14481489 1.0000 120 chr3L:16634255-16634375 1.0000 120 chr3L:14326426-14326546 1.0000 120 chr3R:17938886-17939006 1.0000 120 chr3L:14662313-14662433 1.0000 120 chr2R:12912255-12912375 1.0000 120 chrX:10681886-10682006 1.0000 120 chr3R:15426230-15426350 1.0000 120 chr3R:27189581-27189701 1.0000 120 chrX:460295-460415 1.0000 120 chr3L:15349019-15349139 1.0000 120 chr2L:14183019-14183139 1.0000 120 chr3R:11341447-11341567 1.0000 120 chr4:1084407-1084527 1.0000 120 chr3R:15660573-15660693 1.0000 120 chr3L:7087156-7087276 1.0000 120 chrX:12248324-12248444 1.0000 120 chr3L:22586510-22586630 1.0000 120 chr2L:17381216-17381336 1.0000 120 chr3R:17593597-17593717 1.0000 120 chrX:2122639-2122759 1.0000 120 chr2R:11649687-11649807 1.0000 120 chr2R:12456156-12456276 1.0000 120 chr2L:12553873-12553993 1.0000 120 chr3R:30216042-30216162 1.0000 120 chr3R:21642425-21642545 1.0000 120 chr2L:9442930-9443050 1.0000 120 chr3R:11370504-11370624 1.0000 120 chr3L:10197518-10197638 1.0000 120 chr3R:21654870-21654990 1.0000 120 chr2L:5725849-5725969 1.0000 120 chr3R:8878562-8878682 1.0000 120 chr2R:6558450-6558570 1.0000 120 chr2L:19167274-19167394 1.0000 120 chr3L:18411495-18411615 1.0000 120 chr3R:25587890-25588010 1.0000 120 chr2R:17335867-17335987 1.0000 120 chr4:813493-813613 1.0000 120 chr2L:16111305-16111425 1.0000 120 chr2R:18240359-18240479 1.0000 120 chr3R:17583797-17583917 1.0000 120 chr3L:4945067-4945187 1.0000 120 chrX:5530629-5530749 1.0000 120 chr3R:4354031-4354151 1.0000 120 chrX:10825890-10826010 1.0000 120 chr2L:15742106-15742226 1.0000 120 chr2R:12744145-12744265 1.0000 120 chr3R:22718002-22718122 1.0000 120 chr3L:17459257-17459377 1.0000 120 chr3L:15734180-15734300 1.0000 120 chr3R:22252292-22252412 1.0000 120 chr2L:1672355-1672475 1.0000 120 chr3L:2856864-2856984 1.0000 120 chr2L:6247611-6247731 1.0000 120 chr3L:14576617-14576737 1.0000 120 chr2R:19150527-19150647 1.0000 120 chr2R:21544684-21544804 1.0000 120 chrX:11631877-11631997 1.0000 120 chr3L:22952795-22952915 1.0000 120 chr2L:6077085-6077205 1.0000 120 chr2L:21034558-21034678 1.0000 120 chrX:7716475-7716595 1.0000 120 chr3R:11319469-11319589 1.0000 120 chr3R:15512355-15512475 1.0000 120 chr3L:15285681-15285801 1.0000 120 chr3L:18850813-18850933 1.0000 120 chr2R:13568621-13568741 1.0000 120 chrX:12259574-12259694 1.0000 120 chr3R:14447491-14447611 1.0000 120 chrX:3150769-3150889 1.0000 120 chr3L:18350643-18350763 1.0000 120 chr3L:5929667-5929787 1.0000 120 chr2L:6121660-6121780 1.0000 120 chr3L:18849879-18849999 1.0000 120 chr3R:11343074-11343194 1.0000 120 chr2R:22370510-22370630 1.0000 120 chr3R:6862706-6862826 1.0000 120 chr3R:9347843-9347963 1.0000 120 chr3R:7104462-7104582 1.0000 120 chr2R:11484391-11484511 1.0000 120 chr2L:4034465-4034585 1.0000 120 chr3R:6234310-6234430 1.0000 120 chr3R:4863052-4863172 1.0000 120 chr2R:23608878-23608998 1.0000 120 chrX:8660511-8660631 1.0000 120 chrX:7459575-7459695 1.0000 120 chr2L:15370617-15370737 1.0000 120 chr2L:7540000-7540120 1.0000 120 chrX:10822577-10822697 1.0000 120 chr2R:17145778-17145898 1.0000 120 chr2R:23576068-23576188 1.0000 120 chr2L:1247622-1247742 1.0000 120 chrX:1598416-1598536 1.0000 120 chr2R:24896406-24896526 1.0000 120 chrX:20555105-20555225 1.0000 120 chr2R:14430746-14430866 1.0000 120 chr3L:13660731-13660851 1.0000 120 chr3L:15281179-15281299 1.0000 120 chr3R:27825982-27826102 1.0000 120 chr2R:8860675-8860795 1.0000 120 chr2R:23586333-23586453 1.0000 120 chr3L:16634455-16634575 1.0000 120 chr3R:16525531-16525651 1.0000 120 chr3L:15624236-15624356 1.0000 120 chr3L:9053286-9053406 1.0000 120 chr3R:22536922-22537042 1.0000 120 chr4:426817-426937 1.0000 120 chr3R:29375758-29375878 1.0000 120 chrX:16157559-16157679 1.0000 120 chr3R:29264706-29264826 1.0000 120 chr2R:8015209-8015329 1.0000 120 chrX:19371268-19371388 1.0000 120 chr3L:16746739-16746859 1.0000 120 chr2L:13292607-13292727 1.0000 120 chr3L:12801683-12801803 1.0000 120 chr2L:6611523-6611643 1.0000 120 chr2L:1441982-1442102 1.0000 120 chr3L:14577564-14577684 1.0000 120 chr2R:17339941-17340061 1.0000 120 chr2L:14136362-14136482 1.0000 120 chr2R:24325464-24325584 1.0000 120 chr2L:13211858-13211978 1.0000 120 chr2L:6319258-6319378 1.0000 120 chrX:1381515-1381635 1.0000 120 chr3L:16978516-16978636 1.0000 120 chr3R:6953577-6953697 1.0000 120 chr3L:7510163-7510283 1.0000 120 chrX:11500425-11500545 1.0000 120 chr2R:23639046-23639166 1.0000 120 chr2L:7867217-7867337 1.0000 120 chr2R:9558382-9558502 1.0000 120 chr3L:12066500-12066620 1.0000 120 chr3L:3102753-3102873 1.0000 120 chr3L:22382871-22382991 1.0000 120 chr2L:14136562-14136682 1.0000 120 chr2L:10353965-10354085 1.0000 120 chrX:3883101-3883221 1.0000 120 chr2R:14348158-14348278 1.0000 120 chr3L:21040465-21040585 1.0000 120 chr3R:29266485-29266605 1.0000 120 chr3R:6991053-6991173 1.0000 120 chr3L:15248807-15248927 1.0000 120 chr2R:25119286-25119406 1.0000 120 chr3R:10490810-10490930 1.0000 120 chr3L:11407683-11407803 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pros/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pros.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.237 G 0.237 T 0.274 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.237 G 0.237 T 0.274 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGGTKGD MEME-1 width = 8 sites = 69 llr = 532 E-value = 3.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::2:32 pos.-specific C :::::::1 probability G a9aa:573 matrix T :1::85:4 bits 2.1 * ** 1.9 * ** 1.7 * ** 1.5 **** Relative 1.2 **** * Entropy 1.0 ******* (11.1 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel GGGGTTGT consensus AGAG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7459575-7459695 90 1.33e-05 TAGGCCAAAG Ggggtggt gggtggtctg chr2R:11649687-11649807 46 1.33e-05 ATGGCTAGAT GGGGTGGT TTTCGGGGGA chr3L:6701088-6701208 35 1.33e-05 CTACCTTTTC GGGGTGGT TTCCTGCCTC chr3R:26870604-26870724 22 1.33e-05 ACCAAACAAC GGGGTGGT TTTACATGCA chr2R:23586333-23586453 44 2.87e-05 ggaaCCAAAA GGGGTTGT CGGCGGCGTC chr3L:18850813-18850933 16 2.87e-05 ATGCAAATTA GGGGTTGT TATCCCTGCT chr3R:11319469-11319589 29 2.87e-05 ATGCCTTTTG GGGGTTGT GAGATGCAGG chr2R:12744145-12744265 62 2.87e-05 TTAAGTCTGT GGGGTTGT CCGGACATCT chr2L:9442930-9443050 23 2.87e-05 ACAGATTGAT GGGGTTGT TGGCTCGAAT chr3R:17593597-17593717 57 2.87e-05 GACGCTCCTG GGGGTTGT TGTTGTCCTG chrX:2410951-2411071 25 2.87e-05 tacggggcta ggggTTGT TGCGCAAGAG chr3R:25174668-25174788 52 2.87e-05 GGCTCAAGAC GGGGTTGT CAGGCGGACT chr2L:16683811-16683931 41 2.87e-05 TCTATTCGCC GGGGTTGT CAAGCAGAAG chr3R:29266485-29266605 76 4.02e-05 AGATGTCGCA GGGGTGGG TAGAGATGCA chr3L:17459257-17459377 74 4.02e-05 GAGGGGAGAT GGGGTGGG TTTTTCATTT chr3L:2819833-2819953 45 4.02e-05 GCCGCCCTTT GGGGTGGG AAATTCGATC chrX:10825890-10826010 109 5.35e-05 ctgcgtggtg ggggttgg ttgA chr2R:8246938-8247058 26 5.35e-05 GTACAATCAG GGGGTTGG TTGGAAAACC chr2R:9558382-9558502 77 6.57e-05 ATCAGCCTTA GGGGTGGA TGTTTTCACG chr3L:4945067-4945187 113 6.57e-05 TGTGGAATGT GGGGTGGA chr3R:21642425-21642545 108 6.57e-05 GAACGAACCA GGGGTGGA ACTTG chrX:660024-660144 74 7.99e-05 GGGGATCACA GGGGTTGA AATTGGCTGG chrX:595858-595978 70 7.99e-05 GGGATGGGCA GGGGTTGA TTTGACGCTG chr3L:13647046-13647166 37 7.99e-05 CTTCATTATC GGGGTTGA TTTCCGCATC chr3R:4524317-4524437 92 7.99e-05 TGCTGGTTTG GGGGTTGA AGATTGCGGC chr3L:15624236-15624356 99 9.14e-05 GATTGCGATT GGGGTGGC CGAAGGACGA chrX:12259574-12259694 27 9.14e-05 AAACTCGGGT GGGGTGGC AACTCTGATG chr3R:11370504-11370624 23 9.14e-05 GAAGAACGGA GGGGTGGC ATCCGTTGAC chr3L:7510163-7510283 110 1.19e-04 CAAAGGCGGT GGGGTGAT TAA chr2L:17381216-17381336 25 1.19e-04 TGCCATTTCG GGGGTTGC AAATGGCATG chr3L:14662313-14662433 7 1.19e-04 GACAAC GGGGTGAT TTTCACAGCG chr2L:17584074-17584194 80 1.19e-04 TCCCAAGGAC GGGGTGAT GGAAATCGTG chrX:19364179-19364299 14 1.19e-04 TTTATGTTAT GGGGTTGC AGACGAAACA chr2L:19829508-19829628 32 1.47e-04 AAACACCCCA GGGGAGGT GTTGGCTTAC chr3L:13660731-13660851 12 1.74e-04 CGCCCGAATG GGGGTGAG TTTTCCCGTT chr3L:2860570-2860690 71 1.74e-04 CCCCACGTTA GGGGATGT TTATGCGCTG chr3L:14945765-14945885 48 1.74e-04 CTCGATGGAG GGGGATGT CCCAGAAGAA chrX:276708-276828 100 1.74e-04 CGTCCTTATA GGGGATGT GAGCACGACC chr2L:1247622-1247742 48 1.99e-04 TATTTTCATA GGGGTTAG TTGCCGAAGA chrX:8660511-8660631 84 1.99e-04 CCCAAAACGT ggggaggg ggagagggta chr3R:4863052-4863172 87 1.99e-04 TGCTGTCGTC GGGGAGGG ACGCAGAAAT chr2L:16111305-16111425 77 1.99e-04 GTCAAGTTCA GGGGAGGG CTTAAATGTG chr3L:10684631-10684751 43 1.99e-04 TACACATTTA GGGGTTAG ACAGTCGTAC chr3L:14170246-14170366 10 1.99e-04 TGCCTGGCA GGGGAGGG CTAAAGTAGC chr3R:6861895-6862015 1 1.99e-04 . GGGGAGGG GTTCAAACTC chr2L:14136562-14136682 98 2.24e-04 CTGTGTGCGA GGGGTGAA CAAATCCGAA chrX:11500425-11500545 92 2.24e-04 TCATTTCgac ggggatgg gtatgggtat chrX:20555105-20555225 23 2.50e-04 GCGCATCGCG GGGGTTAA ACGCCAGCCC chr2R:13568621-13568741 83 2.50e-04 TTTTCGTTAA GGGGTTAA ATATTCTTTA chrX:11631877-11631997 50 2.50e-04 GTTTTTAGGG GGGGTTAA AACGCAGGGC chr3L:15734180-15734300 57 2.50e-04 TGTGCAGCAG GGGGTTAA GTCGGGTTGT chr2R:13724356-13724476 43 2.50e-04 CGTCCTGCGA GGGGAGGA CTTTTGCCAT chr3L:537641-537761 55 2.63e-04 TCAAAATGCA GGGGATGA ATTCCGAGAA chr2L:12553873-12553993 52 2.75e-04 GCCACTTTGA GGGGTGAC TTTTACCCAA chr2R:9549567-9549687 113 2.75e-04 AAAAAGCCCA GGGGTGAC chr3R:11366454-11366574 70 2.75e-04 GACGATCGAG GGGGTGAC TTATGCGGAA chr2R:11718086-11718206 32 3.00e-04 GGGATTTCGA GGGGTTAC CGAGGGATGA chr3L:16746739-16746859 14 3.41e-04 TGGCTGTGTG GTGGTGGT TGGTATCGAT chr3R:30216042-30216162 93 3.41e-04 TTACATTTTC GTGGTGGT TGATATTATG chr2L:6851064-6851184 66 3.41e-04 GGGTTGGCCA GTGGTGGT GGGTCATGGG chr3R:7013386-7013506 70 3.41e-04 CTTCGGGTGG GTGGTGGT GTTCATCTTC chr2L:4349785-4349905 56 3.74e-04 TTGTACAAAA GGGGATAT GCTGCTCGAT chr3L:15047745-15047865 65 3.74e-04 TTGTATCCTT GTGGTTGT CTGCGATCCT chr3R:9347843-9347963 37 4.26e-04 CATCATCGCG GTGGTTGG TTTCTGTCGG chr2R:14003264-14003384 77 4.26e-04 GCCTCAGCGA GTGGTTGG CCGTTAAATT chr3L:4357333-4357453 54 4.26e-04 TTTTCTTTTG GGggatag caaagaaatg chr3L:10809392-10809512 67 4.26e-04 ATTCAGCAAA GTGGTTGG ATGTGGAGCA chr3R:8702474-8702594 111 4.53e-04 GCGGATGTGC GGGGAGAA AT chrX:10940727-10940847 69 4.53e-04 TCGTCTCTTT GGGGAGAA AGTCCCCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7459575-7459695 1.3e-05 89_[+1]_23 chr2R:11649687-11649807 1.3e-05 45_[+1]_67 chr3L:6701088-6701208 1.3e-05 34_[+1]_78 chr3R:26870604-26870724 1.3e-05 21_[+1]_91 chr2R:23586333-23586453 2.9e-05 43_[+1]_69 chr3L:18850813-18850933 2.9e-05 15_[+1]_97 chr3R:11319469-11319589 2.9e-05 28_[+1]_84 chr2R:12744145-12744265 2.9e-05 61_[+1]_51 chr2L:9442930-9443050 2.9e-05 22_[+1]_90 chr3R:17593597-17593717 2.9e-05 56_[+1]_56 chrX:2410951-2411071 2.9e-05 24_[+1]_88 chr3R:25174668-25174788 2.9e-05 51_[+1]_61 chr2L:16683811-16683931 2.9e-05 40_[+1]_72 chr3R:29266485-29266605 4e-05 75_[+1]_37 chr3L:17459257-17459377 4e-05 73_[+1]_39 chr3L:2819833-2819953 4e-05 44_[+1]_68 chrX:10825890-10826010 5.3e-05 108_[+1]_4 chr2R:8246938-8247058 5.3e-05 25_[+1]_87 chr2R:9558382-9558502 6.6e-05 76_[+1]_36 chr3L:4945067-4945187 6.6e-05 112_[+1] chr3R:21642425-21642545 6.6e-05 107_[+1]_5 chrX:660024-660144 8e-05 73_[+1]_39 chrX:595858-595978 8e-05 69_[+1]_43 chr3L:13647046-13647166 8e-05 36_[+1]_76 chr3R:4524317-4524437 8e-05 91_[+1]_21 chr3L:15624236-15624356 9.1e-05 98_[+1]_14 chrX:12259574-12259694 9.1e-05 26_[+1]_86 chr3R:11370504-11370624 9.1e-05 22_[+1]_90 chr3L:7510163-7510283 0.00012 109_[+1]_3 chr2L:17381216-17381336 0.00012 24_[+1]_88 chr3L:14662313-14662433 0.00012 6_[+1]_106 chr2L:17584074-17584194 0.00012 79_[+1]_33 chrX:19364179-19364299 0.00012 13_[+1]_99 chr2L:19829508-19829628 0.00015 31_[+1]_81 chr3L:13660731-13660851 0.00017 11_[+1]_101 chr3L:2860570-2860690 0.00017 70_[+1]_42 chr3L:14945765-14945885 0.00017 47_[+1]_65 chrX:276708-276828 0.00017 99_[+1]_13 chr2L:1247622-1247742 0.0002 47_[+1]_65 chrX:8660511-8660631 0.0002 83_[+1]_29 chr3R:4863052-4863172 0.0002 86_[+1]_26 chr2L:16111305-16111425 0.0002 76_[+1]_36 chr3L:10684631-10684751 0.0002 42_[+1]_70 chr3L:14170246-14170366 0.0002 9_[+1]_103 chr3R:6861895-6862015 0.0002 [+1]_112 chr2L:14136562-14136682 0.00022 97_[+1]_15 chrX:11500425-11500545 0.00022 91_[+1]_21 chrX:20555105-20555225 0.00025 22_[+1]_90 chr2R:13568621-13568741 0.00025 82_[+1]_30 chrX:11631877-11631997 0.00025 49_[+1]_63 chr3L:15734180-15734300 0.00025 56_[+1]_56 chr2R:13724356-13724476 0.00025 42_[+1]_70 chr3L:537641-537761 0.00026 54_[+1]_58 chr2L:12553873-12553993 0.00028 51_[+1]_61 chr2R:9549567-9549687 0.00028 112_[+1] chr3R:11366454-11366574 0.00028 69_[+1]_43 chr2R:11718086-11718206 0.0003 31_[+1]_81 chr3L:16746739-16746859 0.00034 13_[+1]_99 chr3R:30216042-30216162 0.00034 92_[+1]_20 chr2L:6851064-6851184 0.00034 65_[+1]_47 chr3R:7013386-7013506 0.00034 69_[+1]_43 chr2L:4349785-4349905 0.00037 55_[+1]_57 chr3L:15047745-15047865 0.00037 64_[+1]_48 chr3R:9347843-9347963 0.00043 36_[+1]_76 chr2R:14003264-14003384 0.00043 76_[+1]_36 chr3L:4357333-4357453 0.00043 53_[+1]_59 chr3L:10809392-10809512 0.00043 66_[+1]_46 chr3R:8702474-8702594 0.00045 110_[+1]_2 chrX:10940727-10940847 0.00045 68_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGTKGD width=8 seqs=69 chrX:7459575-7459695 ( 90) GGGGTGGT 1 chr2R:11649687-11649807 ( 46) GGGGTGGT 1 chr3L:6701088-6701208 ( 35) GGGGTGGT 1 chr3R:26870604-26870724 ( 22) GGGGTGGT 1 chr2R:23586333-23586453 ( 44) GGGGTTGT 1 chr3L:18850813-18850933 ( 16) GGGGTTGT 1 chr3R:11319469-11319589 ( 29) GGGGTTGT 1 chr2R:12744145-12744265 ( 62) GGGGTTGT 1 chr2L:9442930-9443050 ( 23) GGGGTTGT 1 chr3R:17593597-17593717 ( 57) GGGGTTGT 1 chrX:2410951-2411071 ( 25) GGGGTTGT 1 chr3R:25174668-25174788 ( 52) GGGGTTGT 1 chr2L:16683811-16683931 ( 41) GGGGTTGT 1 chr3R:29266485-29266605 ( 76) GGGGTGGG 1 chr3L:17459257-17459377 ( 74) GGGGTGGG 1 chr3L:2819833-2819953 ( 45) GGGGTGGG 1 chrX:10825890-10826010 ( 109) GGGGTTGG 1 chr2R:8246938-8247058 ( 26) GGGGTTGG 1 chr2R:9558382-9558502 ( 77) GGGGTGGA 1 chr3L:4945067-4945187 ( 113) GGGGTGGA 1 chr3R:21642425-21642545 ( 108) GGGGTGGA 1 chrX:660024-660144 ( 74) GGGGTTGA 1 chrX:595858-595978 ( 70) GGGGTTGA 1 chr3L:13647046-13647166 ( 37) GGGGTTGA 1 chr3R:4524317-4524437 ( 92) GGGGTTGA 1 chr3L:15624236-15624356 ( 99) GGGGTGGC 1 chrX:12259574-12259694 ( 27) GGGGTGGC 1 chr3R:11370504-11370624 ( 23) GGGGTGGC 1 chr3L:7510163-7510283 ( 110) GGGGTGAT 1 chr2L:17381216-17381336 ( 25) GGGGTTGC 1 chr3L:14662313-14662433 ( 7) GGGGTGAT 1 chr2L:17584074-17584194 ( 80) GGGGTGAT 1 chrX:19364179-19364299 ( 14) GGGGTTGC 1 chr2L:19829508-19829628 ( 32) GGGGAGGT 1 chr3L:13660731-13660851 ( 12) GGGGTGAG 1 chr3L:2860570-2860690 ( 71) GGGGATGT 1 chr3L:14945765-14945885 ( 48) GGGGATGT 1 chrX:276708-276828 ( 100) GGGGATGT 1 chr2L:1247622-1247742 ( 48) GGGGTTAG 1 chrX:8660511-8660631 ( 84) GGGGAGGG 1 chr3R:4863052-4863172 ( 87) GGGGAGGG 1 chr2L:16111305-16111425 ( 77) GGGGAGGG 1 chr3L:10684631-10684751 ( 43) GGGGTTAG 1 chr3L:14170246-14170366 ( 10) GGGGAGGG 1 chr3R:6861895-6862015 ( 1) GGGGAGGG 1 chr2L:14136562-14136682 ( 98) GGGGTGAA 1 chrX:11500425-11500545 ( 92) GGGGATGG 1 chrX:20555105-20555225 ( 23) GGGGTTAA 1 chr2R:13568621-13568741 ( 83) GGGGTTAA 1 chrX:11631877-11631997 ( 50) GGGGTTAA 1 chr3L:15734180-15734300 ( 57) GGGGTTAA 1 chr2R:13724356-13724476 ( 43) GGGGAGGA 1 chr3L:537641-537761 ( 55) GGGGATGA 1 chr2L:12553873-12553993 ( 52) GGGGTGAC 1 chr2R:9549567-9549687 ( 113) GGGGTGAC 1 chr3R:11366454-11366574 ( 70) GGGGTGAC 1 chr2R:11718086-11718206 ( 32) GGGGTTAC 1 chr3L:16746739-16746859 ( 14) GTGGTGGT 1 chr3R:30216042-30216162 ( 93) GTGGTGGT 1 chr2L:6851064-6851184 ( 66) GTGGTGGT 1 chr3R:7013386-7013506 ( 70) GTGGTGGT 1 chr2L:4349785-4349905 ( 56) GGGGATAT 1 chr3L:15047745-15047865 ( 65) GTGGTTGT 1 chr3R:9347843-9347963 ( 37) GTGGTTGG 1 chr2R:14003264-14003384 ( 77) GTGGTTGG 1 chr3L:4357333-4357453 ( 54) GGGGATAG 1 chr3L:10809392-10809512 ( 67) GTGGTTGG 1 chr3R:8702474-8702594 ( 111) GGGGAGAA 1 chrX:10940727-10940847 ( 69) GGGGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 3.2e-008 -1275 -1275 207 -1275 -1275 -1275 190 -124 -1275 -1275 207 -1275 -1275 -1275 207 -1275 -12 -1275 -1275 149 -1275 -1275 105 89 13 -1275 161 -1275 -12 -86 14 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 3.2e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.884058 0.115942 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.231884 0.000000 0.000000 0.768116 0.000000 0.000000 0.492754 0.507246 0.275362 0.000000 0.724638 0.000000 0.231884 0.130435 0.260870 0.376812 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGTKGD MEME-1 regular expression -------------------------------------------------------------------------------- GGGG[TA][TG][GA][TGA] -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCCCC MEME-2 width = 8 sites = 28 llr = 255 E-value = 6.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::73::2: pos.-specific C aa36aa6a probability G :::::::: matrix T :::1::1: bits 2.1 ** ** * 1.9 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.2 *** ** * Entropy 1.0 *** ** * (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCC consensus CA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1247622-1247742 102 1.06e-05 TTCTGGTATT CCACCCCC GGGTGAACCA chr3R:22252292-22252412 37 1.06e-05 AGCGGAGTAG CCACCCCC TTGGGCGGTT chr3R:9029495-9029615 79 1.06e-05 CACAAGACAC CCACCCCC GCGATTCTCT chr3R:11345757-11345877 98 1.06e-05 CTTCAAATTA CCACCCCC AAACCCCGTT chr3L:2860570-2860690 57 1.06e-05 TGACTGCAAA CCACCCCC ACGTTAGGGG chr3L:16634455-16634575 3 3.18e-05 TT CCCCCCCC TTTGGCCACA chr2L:6077085-6077205 108 3.18e-05 AGATCTAAAA CCAACCCC CAAAT chrX:10825890-10826010 13 3.18e-05 GCATCAcccc cccccccc cccttccacc chr2L:17381216-17381336 86 3.18e-05 GTATACACCC CCCCCCCC TCCCACATtt chr2L:9704514-9704634 73 3.18e-05 ACGCCCCCTC CCCCCCCC ACCGATACTC chr3R:22712364-22712484 21 3.18e-05 CGGTACCATA CCAACCCC ATAGCTGCCG chr2L:7272591-7272711 11 3.18e-05 GAAACTGAAA CCAACCCC GTGGCTTCTA chr2L:14120829-14120949 82 3.18e-05 CACCCCATCT CCAACCCC TTTGCACACT chr2R:8233323-8233443 90 3.18e-05 CCGTGACAAC CCAACCCC CTTGCAAGGC chr3R:6991053-6991173 40 4.30e-05 CAAAAAccac ccacccac ccaaacagtc chr3L:2856864-2856984 15 4.30e-05 ATGCCGCACT CCACCCAC TCTGTTCTTC chr3R:11341447-11341567 11 4.30e-05 aaccgcccat ccacccac tgaccacctc chr2R:17083608-17083728 57 4.30e-05 atcTTTTCCG CCACCCAC TCATGTCATT chr2R:22370510-22370630 83 5.53e-05 ACAGGCAGTG ccaccctc ccggccatcc chr3R:6806106-6806226 10 5.53e-05 GCTCGTCAG CCACCCTC ACCCTCTGAT chr3L:19564401-19564521 8 5.53e-05 accacca ccaccCTC CAATGCctcc chrX:525743-525863 26 5.53e-05 GCATGTGTTT CCACCCTC CCTCCTTGCC chr3L:18350643-18350763 17 6.59e-05 AGGTCCAAAA CCCACCCC TCGGAAGTCT chr2L:15735948-15736068 81 6.59e-05 TTTGGAAAAA CCCACCCC TGGAGAACTC chr2R:12912255-12912375 45 8.84e-05 TTCCTTCCTG CCCCCCAC CATTCGAAAT chr3L:4464047-4464167 16 8.84e-05 atctccatct ccaaccac atcgccattg chr3R:22718002-22718122 56 1.01e-04 CTTTAGTTTC CCATCCCC GGAGAACCAC chr3L:15285681-15285801 23 1.48e-04 AGCTGAAAAT CCCTCCCC TTGGCAGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1247622-1247742 1.1e-05 101_[+2]_11 chr3R:22252292-22252412 1.1e-05 36_[+2]_76 chr3R:9029495-9029615 1.1e-05 78_[+2]_34 chr3R:11345757-11345877 1.1e-05 97_[+2]_15 chr3L:2860570-2860690 1.1e-05 56_[+2]_56 chr3L:16634455-16634575 3.2e-05 2_[+2]_110 chr2L:6077085-6077205 3.2e-05 107_[+2]_5 chrX:10825890-10826010 3.2e-05 12_[+2]_100 chr2L:17381216-17381336 3.2e-05 85_[+2]_27 chr2L:9704514-9704634 3.2e-05 72_[+2]_40 chr3R:22712364-22712484 3.2e-05 20_[+2]_92 chr2L:7272591-7272711 3.2e-05 10_[+2]_102 chr2L:14120829-14120949 3.2e-05 81_[+2]_31 chr2R:8233323-8233443 3.2e-05 89_[+2]_23 chr3R:6991053-6991173 4.3e-05 39_[+2]_73 chr3L:2856864-2856984 4.3e-05 14_[+2]_98 chr3R:11341447-11341567 4.3e-05 10_[+2]_102 chr2R:17083608-17083728 4.3e-05 56_[+2]_56 chr2R:22370510-22370630 5.5e-05 82_[+2]_30 chr3R:6806106-6806226 5.5e-05 9_[+2]_103 chr3L:19564401-19564521 5.5e-05 7_[+2]_105 chrX:525743-525863 5.5e-05 25_[+2]_87 chr3L:18350643-18350763 6.6e-05 16_[+2]_96 chr2L:15735948-15736068 6.6e-05 80_[+2]_32 chr2R:12912255-12912375 8.8e-05 44_[+2]_68 chr3L:4464047-4464167 8.8e-05 15_[+2]_97 chr3R:22718002-22718122 0.0001 55_[+2]_57 chr3L:15285681-15285801 0.00015 22_[+2]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCCCC width=8 seqs=28 chr2L:1247622-1247742 ( 102) CCACCCCC 1 chr3R:22252292-22252412 ( 37) CCACCCCC 1 chr3R:9029495-9029615 ( 79) CCACCCCC 1 chr3R:11345757-11345877 ( 98) CCACCCCC 1 chr3L:2860570-2860690 ( 57) CCACCCCC 1 chr3L:16634455-16634575 ( 3) CCCCCCCC 1 chr2L:6077085-6077205 ( 108) CCAACCCC 1 chrX:10825890-10826010 ( 13) CCCCCCCC 1 chr2L:17381216-17381336 ( 86) CCCCCCCC 1 chr2L:9704514-9704634 ( 73) CCCCCCCC 1 chr3R:22712364-22712484 ( 21) CCAACCCC 1 chr2L:7272591-7272711 ( 11) CCAACCCC 1 chr2L:14120829-14120949 ( 82) CCAACCCC 1 chr2R:8233323-8233443 ( 90) CCAACCCC 1 chr3R:6991053-6991173 ( 40) CCACCCAC 1 chr3L:2856864-2856984 ( 15) CCACCCAC 1 chr3R:11341447-11341567 ( 11) CCACCCAC 1 chr2R:17083608-17083728 ( 57) CCACCCAC 1 chr2R:22370510-22370630 ( 83) CCACCCTC 1 chr3R:6806106-6806226 ( 10) CCACCCTC 1 chr3L:19564401-19564521 ( 8) CCACCCTC 1 chrX:525743-525863 ( 26) CCACCCTC 1 chr3L:18350643-18350763 ( 17) CCCACCCC 1 chr2L:15735948-15736068 ( 81) CCCACCCC 1 chr2R:12912255-12912375 ( 45) CCCCCCAC 1 chr3L:4464047-4464167 ( 16) CCAACCAC 1 chr3R:22718002-22718122 ( 56) CCATCCCC 1 chr3L:15285681-15285801 ( 23) CCCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 6.1e-001 -1145 208 -1145 -1145 -1145 208 -1145 -1145 150 27 -1145 -1145 18 144 -1145 -194 -1145 208 -1145 -1145 -1145 208 -1145 -1145 -23 144 -1145 -94 -1145 208 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.1e-001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.285714 0.642857 0.000000 0.071429 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.214286 0.642857 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCCC MEME-2 regular expression -------------------------------------------------------------------------------- CC[AC][CA]CC[CA]C -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-3 width = 8 sites = 10 llr = 108 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::2:: pos.-specific C :a::a::a probability G a::a::a: matrix T :::::8:: bits 2.1 ***** ** 1.9 ***** ** 1.7 ***** ** 1.5 ***** ** Relative 1.2 ******** Entropy 1.0 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11500425-11500545 53 1.22e-05 TGATAAAGCT GCAGCTGC ATTTAATGAG chr3L:16978516-16978636 55 1.22e-05 AATGCCAGGT GCAGCTGC AGCTTAGCCT chr4:426817-426937 23 1.22e-05 ACTCGGTCTT GCAGCTGC GCTCCGGTCT chr3L:15624236-15624356 26 1.22e-05 ACAACCAGAG gcagctgc tgctgctgct chr3R:21654870-21654990 21 1.22e-05 ATTTCCAGGG GCAGCTGC TCGATCGCTC chr3R:26952964-26953084 2 1.22e-05 A GCAGCTGC AGGACCAAAA chr2R:8233323-8233443 64 1.22e-05 ATTGTTCGGC GCAGCTGC CGCAACCCCC chr3R:4954580-4954700 12 1.22e-05 TAGGCATTAC GCAGCTGC GACTCAGTCT chr4:813493-813613 52 2.35e-05 GGCGGTTTTT GCAGCAGC CACACCGCCT chr3L:10809392-10809512 82 2.35e-05 TGGATGTGGA GCAGCAGC ATCTTTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11500425-11500545 1.2e-05 52_[+3]_60 chr3L:16978516-16978636 1.2e-05 54_[+3]_58 chr4:426817-426937 1.2e-05 22_[+3]_90 chr3L:15624236-15624356 1.2e-05 25_[+3]_87 chr3R:21654870-21654990 1.2e-05 20_[+3]_92 chr3R:26952964-26953084 1.2e-05 1_[+3]_111 chr2R:8233323-8233443 1.2e-05 63_[+3]_49 chr3R:4954580-4954700 1.2e-05 11_[+3]_101 chr4:813493-813613 2.3e-05 51_[+3]_61 chr3L:10809392-10809512 2.3e-05 81_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=10 chrX:11500425-11500545 ( 53) GCAGCTGC 1 chr3L:16978516-16978636 ( 55) GCAGCTGC 1 chr4:426817-426937 ( 23) GCAGCTGC 1 chr3L:15624236-15624356 ( 26) GCAGCTGC 1 chr3R:21654870-21654990 ( 21) GCAGCTGC 1 chr3R:26952964-26953084 ( 2) GCAGCTGC 1 chr2R:8233323-8233443 ( 64) GCAGCTGC 1 chr3R:4954580-4954700 ( 12) GCAGCTGC 1 chr4:813493-813613 ( 52) GCAGCAGC 1 chr3L:10809392-10809512 ( 82) GCAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 6.1e+002 -997 -997 207 -997 -997 208 -997 -997 199 -997 -997 -997 -997 -997 207 -997 -997 208 -997 -997 -33 -997 -997 155 -997 -997 207 -997 -997 208 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 regular expression -------------------------------------------------------------------------------- GCAGC[TA]GC -------------------------------------------------------------------------------- Time 19.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CRTCTTSG MEME-4 width = 8 sites = 31 llr = 272 E-value = 4.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4:::::3 pos.-specific C a::a::6: probability G :6::1:47 matrix T ::a:9a:: bits 2.1 * * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.2 * **** * Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTCTTCG consensus A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3102753-3102873 76 1.54e-05 GGCACAACGA CGTCTTCG CTGGACGATA chr2R:8860675-8860795 89 1.54e-05 AACGGCTCCG CGTCTTCG GGTCTTCTTC chr2R:24896406-24896526 9 1.54e-05 AAGATGTG CGTCTTCG TTGCATCTGA chr3R:6234310-6234430 64 1.54e-05 GAAGAAGACT CGTCTTCG CATGCTCATG chr3R:15426230-15426350 48 1.54e-05 GCCAACTCTT CGTCTTCG GATTTTGCAT chr2L:21233769-21233889 42 1.54e-05 TCCGTCTTCG CGTCTTCG GTGTGGGCCT chr4:393551-393671 63 1.54e-05 ATCTTCGTCC CGTCTTCG GGTTTACCAA chr3L:6812947-6813067 42 1.54e-05 AATTTTGGTT CGTCTTCG ATTTCGTCTC chr3L:19564401-19564521 31 1.54e-05 Cctccgtctt cgtcttcg ccttcgtcac chrX:19371268-19371388 74 4.71e-05 GTACACACAA CATCTTCG GCGATCTGAG chr2R:8015209-8015329 112 4.71e-05 GGTCGAGCAG CGTCTTGG G chr2R:11484391-11484511 57 4.71e-05 TTGGCGTCGG CGTCTTGG ACGTCGTCTT chr3R:7013386-7013506 81 4.71e-05 TGGTGGTGTT CATCTTCG CTACGTGCGA chr3L:4441719-4441839 37 4.71e-05 GTCGTCTTGT CGTCTTGG CCAGCGTGAA chr2R:21544684-21544804 84 7.98e-05 TGGGTCGGGG CATCTTGG AATCTCAGAA chrX:10681886-10682006 93 7.98e-05 GATTAGATGT CATCTTGG TCCTGTGTTA chr3L:14326426-14326546 11 7.98e-05 AATGTAATGT CGTCTTCA GGGTGAGTTC chr2L:2430350-2430470 9 7.98e-05 tcaatctt catctTGG CCTGGCAAAT chr2L:7174504-7174624 84 7.98e-05 TTTTGAATAT CATCTTGG AAAATGGGGA chr2L:14120829-14120949 56 7.98e-05 GGTTCACCTG CATCTTGG TTTTCCAGCA chr3R:11366454-11366574 51 7.98e-05 TTTCCCAGAG CGTCTTCA AGACGATCGA chrX:2122639-2122759 73 1.14e-04 GGCACAGCAG CATCTTCA ACTTGCAACC chrX:14481369-14481489 109 1.14e-04 tcagcatctc catcttca tcat chr2L:19829508-19829628 15 1.14e-04 TCTTATTATG CATCTTCA AACACCCCAG chr2L:182354-182474 8 1.14e-04 GTTTTTG CGTCTTGA ATTGAATGTC chr2R:17083608-17083728 34 1.14e-04 GCCAcattat catcttca tcatcatcTT chr3R:29893430-29893550 48 1.14e-04 ACCAGTAGTC CGTCTTga agacagaaaa chr2L:6319258-6319378 23 1.27e-04 tcgtactcgt cgtcgtcg cactcgcact chr3L:18411495-18411615 10 1.27e-04 CGTGCCCGC CGTCGTCG TCCAGCGCCC chr3L:15248807-15248927 37 1.72e-04 TTTGGGCCAT CATCGTCG TCTTTGGCCA chrX:10825890-10826010 49 1.72e-04 CACATTGTCC CGTCGTGG GACAAGGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3102753-3102873 1.5e-05 75_[+4]_37 chr2R:8860675-8860795 1.5e-05 88_[+4]_24 chr2R:24896406-24896526 1.5e-05 8_[+4]_104 chr3R:6234310-6234430 1.5e-05 63_[+4]_49 chr3R:15426230-15426350 1.5e-05 47_[+4]_65 chr2L:21233769-21233889 1.5e-05 41_[+4]_71 chr4:393551-393671 1.5e-05 62_[+4]_50 chr3L:6812947-6813067 1.5e-05 41_[+4]_71 chr3L:19564401-19564521 1.5e-05 30_[+4]_82 chrX:19371268-19371388 4.7e-05 73_[+4]_39 chr2R:8015209-8015329 4.7e-05 111_[+4]_1 chr2R:11484391-11484511 4.7e-05 56_[+4]_56 chr3R:7013386-7013506 4.7e-05 80_[+4]_32 chr3L:4441719-4441839 4.7e-05 36_[+4]_76 chr2R:21544684-21544804 8e-05 83_[+4]_29 chrX:10681886-10682006 8e-05 92_[+4]_20 chr3L:14326426-14326546 8e-05 10_[+4]_102 chr2L:2430350-2430470 8e-05 8_[+4]_104 chr2L:7174504-7174624 8e-05 83_[+4]_29 chr2L:14120829-14120949 8e-05 55_[+4]_57 chr3R:11366454-11366574 8e-05 50_[+4]_62 chrX:2122639-2122759 0.00011 72_[+4]_40 chrX:14481369-14481489 0.00011 108_[+4]_4 chr2L:19829508-19829628 0.00011 14_[+4]_98 chr2L:182354-182474 0.00011 7_[+4]_105 chr2R:17083608-17083728 0.00011 33_[+4]_79 chr3R:29893430-29893550 0.00011 47_[+4]_65 chr2L:6319258-6319378 0.00013 22_[+4]_90 chr3L:18411495-18411615 0.00013 9_[+4]_103 chr3L:15248807-15248927 0.00017 36_[+4]_76 chrX:10825890-10826010 0.00017 48_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRTCTTSG width=8 seqs=31 chr3L:3102753-3102873 ( 76) CGTCTTCG 1 chr2R:8860675-8860795 ( 89) CGTCTTCG 1 chr2R:24896406-24896526 ( 9) CGTCTTCG 1 chr3R:6234310-6234430 ( 64) CGTCTTCG 1 chr3R:15426230-15426350 ( 48) CGTCTTCG 1 chr2L:21233769-21233889 ( 42) CGTCTTCG 1 chr4:393551-393671 ( 63) CGTCTTCG 1 chr3L:6812947-6813067 ( 42) CGTCTTCG 1 chr3L:19564401-19564521 ( 31) CGTCTTCG 1 chrX:19371268-19371388 ( 74) CATCTTCG 1 chr2R:8015209-8015329 ( 112) CGTCTTGG 1 chr2R:11484391-11484511 ( 57) CGTCTTGG 1 chr3R:7013386-7013506 ( 81) CATCTTCG 1 chr3L:4441719-4441839 ( 37) CGTCTTGG 1 chr2R:21544684-21544804 ( 84) CATCTTGG 1 chrX:10681886-10682006 ( 93) CATCTTGG 1 chr3L:14326426-14326546 ( 11) CGTCTTCA 1 chr2L:2430350-2430470 ( 9) CATCTTGG 1 chr2L:7174504-7174624 ( 84) CATCTTGG 1 chr2L:14120829-14120949 ( 56) CATCTTGG 1 chr3R:11366454-11366574 ( 51) CGTCTTCA 1 chrX:2122639-2122759 ( 73) CATCTTCA 1 chrX:14481369-14481489 ( 109) CATCTTCA 1 chr2L:19829508-19829628 ( 15) CATCTTCA 1 chr2L:182354-182474 ( 8) CGTCTTGA 1 chr2R:17083608-17083728 ( 34) CATCTTCA 1 chr3R:29893430-29893550 ( 48) CGTCTTGA 1 chr2L:6319258-6319378 ( 23) CGTCGTCG 1 chr3L:18411495-18411615 ( 10) CGTCGTCG 1 chr3L:15248807-15248927 ( 37) CATCGTCG 1 chrX:10825890-10826010 ( 49) CGTCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.13 E= 4.6e+001 -1160 208 -1160 -1160 62 -1160 137 -1160 -1160 -1160 -1160 187 -1160 208 -1160 -1160 -1160 -1160 -88 167 -1160 -1160 -1160 187 -1160 145 58 -1160 3 -1160 164 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.6e+001 0.000000 1.000000 0.000000 0.000000 0.387097 0.000000 0.612903 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.129032 0.870968 0.000000 0.000000 0.000000 1.000000 0.000000 0.645161 0.354839 0.000000 0.258065 0.000000 0.741935 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTCTTSG MEME-4 regular expression -------------------------------------------------------------------------------- C[GA]TCTT[CG][GA] -------------------------------------------------------------------------------- Time 25.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKCWTTT MEME-5 width = 8 sites = 21 llr = 194 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C :::a:::: probability G ::4::::: matrix T aa6:5aaa bits 2.1 * 1.9 ** * *** 1.7 ** * *** 1.5 ** * *** Relative 1.2 ** * *** Entropy 1.0 **** *** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCATTT consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15281179-15281299 66 2.53e-05 CTCCAAGATA TTTCATTT GCCTTAACCC chr3L:17459257-17459377 84 2.53e-05 GGGGTGGGTT TTTCATTT GTTTTGTCCT chrX:14481369-14481489 28 2.53e-05 TCGATTTCGC TTTCATTT GCATTTCTTG chr3L:6701088-6701208 90 2.53e-05 TTGGCGTAGA TTTCATTT TTGGCTTGAT chrX:5530629-5530749 75 4.71e-05 CGTGTGCATT TTGCATTT ATTAAGCGAT chr2L:19167274-19167394 69 4.71e-05 CGTGCGTTTA TTGCATTT GTGTCCGTCT chr3R:21654870-21654990 88 4.71e-05 TTATCTAGGG TTGCATTT TTCATGTCGT chr3R:15426230-15426350 60 4.71e-05 TCTTCGGATT TTGCATTT CGGCTCTTCG chr3R:9029495-9029615 46 4.71e-05 ACCATACAAC TTGCATTT CCTCGCACTT chr3L:3972044-3972164 2 4.71e-05 T TTGCATTT GCCTCCGTAC chr2L:20802783-20802903 25 4.71e-05 GTGTTATGTC TTGCATTT GACTTTGACT chr3L:11407683-11407803 76 7.46e-05 GAGTTTGGCT TTTCTTTT GGGCTGGGAC chr3L:7510163-7510283 32 7.46e-05 TTTTCCGTGT TTTCTTTT CTTTATTATT chr3L:16978516-16978636 94 7.46e-05 GCTCATCAAG TTTCTTTT TTATTATTCC chrX:10823952-10824072 3 7.46e-05 AT TTTCTTTT CCCAATCCCA chr3L:4357333-4357453 45 7.46e-05 TACACCCATT TTTCTTTT GGGggatagc chr2L:1614518-1614638 58 7.46e-05 GAAAACTACC TTTCTTTT CAATTGGAAA chr3L:375809-375929 3 7.46e-05 GG TTTCTTTT TAATTATCAA chr3L:2860570-2860690 13 7.46e-05 TCTTTAATTC TTTCTTTT TGCGTTTCCT chr2R:12912255-12912375 71 9.84e-05 ATTCTCTTAT TTGCTTTT TAATAAAACA chr3L:4464047-4464167 75 9.84e-05 TGTCAGTGCG TTGCTTTT GTCTCTGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15281179-15281299 2.5e-05 65_[+5]_47 chr3L:17459257-17459377 2.5e-05 83_[+5]_29 chrX:14481369-14481489 2.5e-05 27_[+5]_85 chr3L:6701088-6701208 2.5e-05 89_[+5]_23 chrX:5530629-5530749 4.7e-05 74_[+5]_38 chr2L:19167274-19167394 4.7e-05 68_[+5]_44 chr3R:21654870-21654990 4.7e-05 87_[+5]_25 chr3R:15426230-15426350 4.7e-05 59_[+5]_53 chr3R:9029495-9029615 4.7e-05 45_[+5]_67 chr3L:3972044-3972164 4.7e-05 1_[+5]_111 chr2L:20802783-20802903 4.7e-05 24_[+5]_88 chr3L:11407683-11407803 7.5e-05 75_[+5]_37 chr3L:7510163-7510283 7.5e-05 31_[+5]_81 chr3L:16978516-16978636 7.5e-05 93_[+5]_19 chrX:10823952-10824072 7.5e-05 2_[+5]_110 chr3L:4357333-4357453 7.5e-05 44_[+5]_68 chr2L:1614518-1614638 7.5e-05 57_[+5]_55 chr3L:375809-375929 7.5e-05 2_[+5]_110 chr3L:2860570-2860690 7.5e-05 12_[+5]_100 chr2R:12912255-12912375 9.8e-05 70_[+5]_42 chr3L:4464047-4464167 9.8e-05 74_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCWTTT width=8 seqs=21 chr3L:15281179-15281299 ( 66) TTTCATTT 1 chr3L:17459257-17459377 ( 84) TTTCATTT 1 chrX:14481369-14481489 ( 28) TTTCATTT 1 chr3L:6701088-6701208 ( 90) TTTCATTT 1 chrX:5530629-5530749 ( 75) TTGCATTT 1 chr2L:19167274-19167394 ( 69) TTGCATTT 1 chr3R:21654870-21654990 ( 88) TTGCATTT 1 chr3R:15426230-15426350 ( 60) TTGCATTT 1 chr3R:9029495-9029615 ( 46) TTGCATTT 1 chr3L:3972044-3972164 ( 2) TTGCATTT 1 chr2L:20802783-20802903 ( 25) TTGCATTT 1 chr3L:11407683-11407803 ( 76) TTTCTTTT 1 chr3L:7510163-7510283 ( 32) TTTCTTTT 1 chr3L:16978516-16978636 ( 94) TTTCTTTT 1 chrX:10823952-10824072 ( 3) TTTCTTTT 1 chr3L:4357333-4357453 ( 45) TTTCTTTT 1 chr2L:1614518-1614638 ( 58) TTTCTTTT 1 chr3L:375809-375929 ( 3) TTTCTTTT 1 chr3L:2860570-2860690 ( 13) TTTCTTTT 1 chr2R:12912255-12912375 ( 71) TTGCTTTT 1 chr3L:4464047-4464167 ( 75) TTGCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 2.7e+003 -1104 -1104 -1104 187 -1104 -1104 -1104 187 -1104 -1104 85 106 -1104 208 -1104 -1104 106 -1104 -1104 80 -1104 -1104 -1104 187 -1104 -1104 -1104 187 -1104 -1104 -1104 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.7e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 1.000000 0.000000 0.000000 0.523810 0.000000 0.000000 0.476190 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCWTTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TG]C[AT]TTT -------------------------------------------------------------------------------- Time 32.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11366454-11366574 3.77e-02 50_[+4(7.98e-05)]_62 chrX:276708-276828 9.86e-02 120 chr3R:26870604-26870724 2.42e-02 21_[+1(1.33e-05)]_91 chr2L:13244898-13245018 8.69e-02 120 chrX:525743-525863 2.62e-02 25_[+2(5.53e-05)]_87 chrX:10940727-10940847 3.24e-01 120 chr3L:19564401-19564521 4.67e-03 7_[+2(5.53e-05)]_9_[+4(1.54e-05)]_\ 16_[+4(4.71e-05)]_64 chr3R:9000882-9001002 6.44e-01 120 chr3L:2819833-2819953 1.52e-01 44_[+1(4.02e-05)]_68 chr3R:8209966-8210086 5.19e-02 120 chrX:10808865-10808985 8.78e-01 120 chr3L:16172484-16172604 8.12e-01 120 chr3R:29893430-29893550 2.26e-01 120 chr3R:4954580-4954700 2.00e-02 11_[+3(1.22e-05)]_101 chr3R:24556442-24556562 9.28e-01 120 chr2R:8246938-8247058 1.12e-01 25_[+1(5.35e-05)]_87 chr2R:8233323-8233443 7.76e-04 63_[+3(1.22e-05)]_18_[+2(3.18e-05)]_\ 23 chr2L:14120829-14120949 3.54e-03 55_[+4(7.98e-05)]_18_[+2(3.18e-05)]_\ 31 chrX:15147208-15147328 5.00e-01 120 chr2L:21630447-21630567 6.40e-01 120 chr3L:4464047-4464167 6.38e-03 15_[+2(8.84e-05)]_51_[+5(9.84e-05)]_\ 38 chr3L:8363400-8363520 7.55e-01 120 chr3L:14945765-14945885 5.61e-01 120 chr3R:6861895-6862015 3.81e-01 120 chrX:1593800-1593920 2.10e-01 120 chr2L:21233564-21233684 5.45e-01 120 chr2R:17083608-17083728 1.79e-02 56_[+2(4.30e-05)]_56 chr3L:6701088-6701208 7.57e-04 34_[+1(1.33e-05)]_47_[+5(2.53e-05)]_\ 23 chrX:12927750-12927870 5.59e-01 120 chr3L:4357126-4357246 6.75e-01 120 chr2L:7174504-7174624 4.39e-02 83_[+4(7.98e-05)]_29 chr2L:7272591-7272711 8.35e-02 10_[+2(3.18e-05)]_102 chr3R:25437514-25437634 7.99e-01 120 chr4:481356-481476 3.13e-02 120 chr2L:8612370-8612490 5.33e-01 120 chr3L:2860570-2860690 9.43e-05 12_[+5(7.46e-05)]_36_[+2(1.06e-05)]_\ 56 chr2L:2430350-2430470 1.41e-01 8_[+4(7.98e-05)]_104 chrX:19364179-19364299 8.46e-02 120 chr3L:375809-375929 2.24e-01 2_[+5(7.46e-05)]_110 chrX:12212905-12213025 3.75e-01 120 chr2L:4376521-4376641 4.83e-01 120 chr3R:4524317-4524437 8.73e-02 30_[+1(7.99e-05)]_53_[+1(7.99e-05)]_\ 21 chr2L:16310144-16310264 7.71e-01 120 chrX:7082519-7082639 7.66e-01 120 chr3R:6806106-6806226 4.87e-02 9_[+2(5.53e-05)]_103 chr3L:14170246-14170366 7.29e-02 120 chr3L:8560776-8560896 7.73e-01 120 chr2R:10833080-10833200 4.76e-01 120 chr3L:15047745-15047865 2.38e-02 23_[+3(4.47e-05)]_89 chr2L:16683811-16683931 7.30e-02 40_[+1(2.87e-05)]_72 chr3R:26952964-26953084 2.79e-02 1_[+3(1.22e-05)]_111 chr2L:20802783-20802903 6.13e-03 24_[+5(4.71e-05)]_88 chr3L:6812947-6813067 9.70e-02 41_[+4(1.54e-05)]_71 chr3L:10809392-10809512 1.03e-02 81_[+3(2.35e-05)]_31 chrX:10829869-10829989 2.73e-01 120 chr3R:22162188-22162308 2.60e-01 120 chr2L:1441146-1441266 3.61e-01 120 chr4:393551-393671 5.34e-02 10_[+4(1.54e-05)]_44_[+4(1.54e-05)]_\ 50 chr3L:10684631-10684751 5.47e-01 120 chr3L:4441719-4441839 2.74e-01 36_[+4(4.71e-05)]_76 chr3R:11345757-11345877 1.36e-02 97_[+2(1.06e-05)]_15 chrX:1109419-1109539 7.25e-01 120 chr2R:11718086-11718206 4.01e-01 120 chr3L:13647046-13647166 1.04e-01 36_[+1(7.99e-05)]_76 chr3R:8702474-8702594 3.34e-01 120 chr2L:2894230-2894350 8.64e-01 120 chr2L:15735948-15736068 8.83e-02 80_[+2(6.59e-05)]_32 chr3R:7013386-7013506 1.96e-02 80_[+4(4.71e-05)]_32 chr2R:13724356-13724476 2.18e-01 120 chr2R:9549567-9549687 3.12e-01 120 chr2L:1614518-1614638 1.95e-02 57_[+5(7.46e-05)]_55 chr2L:182354-182474 2.36e-01 120 chrX:464047-464167 2.69e-01 120 chr2R:15332822-15332942 6.82e-01 120 chr3L:3972044-3972164 1.31e-01 1_[+5(4.71e-05)]_111 chrX:595858-595978 4.33e-02 69_[+1(7.99e-05)]_43 chr3L:18988199-18988319 5.20e-01 120 chr3L:4357333-4357453 8.09e-02 44_[+5(7.46e-05)]_68 chr2R:17143617-17143737 7.52e-01 120 chr3L:154104-154224 1.82e-01 120 chr3R:8680664-8680784 7.97e-01 120 chr2R:14003264-14003384 6.96e-02 120 chrX:9995125-9995245 9.40e-01 120 chr2R:16846358-16846478 5.86e-01 120 chr2L:21233769-21233889 5.12e-02 33_[+4(1.54e-05)]_[+4(1.54e-05)]_71 chr2L:17584074-17584194 4.01e-01 120 chr2R:9795157-9795277 2.91e-01 120 chr2L:6851064-6851184 5.11e-02 120 chrX:19018535-19018655 1.22e-01 120 chr2L:13212063-13212183 9.48e-01 120 chr3R:9029495-9029615 5.06e-03 45_[+5(4.71e-05)]_25_[+2(1.06e-05)]_\ 34 chr2L:4349785-4349905 8.23e-02 120 chr2L:19829508-19829628 2.27e-03 120 chrX:660024-660144 1.54e-01 73_[+1(7.99e-05)]_39 chr3R:22712364-22712484 1.99e-02 20_[+2(3.18e-05)]_92 chr3R:25174668-25174788 1.63e-01 51_[+1(2.87e-05)]_61 chr3R:21340968-21341088 5.42e-01 120 chr3L:537641-537761 2.01e-01 120 chrX:2410951-2411071 9.65e-02 24_[+1(2.87e-05)]_88 chr2L:9704514-9704634 2.88e-02 71_[+2(3.18e-05)]_41 chr3R:9500742-9500862 6.83e-01 120 chr3L:10841062-10841182 9.25e-01 120 chr3R:6866864-6866984 3.76e-02 28_[+3(8.10e-05)]_84 chr2R:13000735-13000855 7.59e-01 120 chrX:10823952-10824072 3.15e-02 2_[+5(7.46e-05)]_110 chrX:14481369-14481489 2.56e-03 27_[+5(2.53e-05)]_85 chr3L:16634255-16634375 8.40e-01 120 chr3L:14326426-14326546 2.38e-01 10_[+4(7.98e-05)]_102 chr3R:17938886-17939006 7.66e-01 120 chr3L:14662313-14662433 6.93e-02 120 chr2R:12912255-12912375 4.04e-03 44_[+2(8.84e-05)]_18_[+5(9.84e-05)]_\ 42 chrX:10681886-10682006 1.51e-02 92_[+4(7.98e-05)]_20 chr3R:15426230-15426350 2.20e-03 28_[+4(1.54e-05)]_11_[+4(1.54e-05)]_\ 4_[+5(4.71e-05)]_53 chr3R:27189581-27189701 2.15e-01 120 chrX:460295-460415 9.47e-01 120 chr3L:15349019-15349139 7.57e-01 120 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************