******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pnt.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:29699354-29699474 1.0000 120 chr3L:8853017-8853137 1.0000 120 chr3R:26242595-26242715 1.0000 120 chr2L:5453265-5453385 1.0000 120 chrX:873839-873959 1.0000 120 chr2L:4292734-4292854 1.0000 120 chr2R:23997239-23997359 1.0000 120 chr2L:7149008-7149128 1.0000 120 chrX:16105841-16105961 1.0000 120 chr2L:23332458-23332578 1.0000 120 chrX:11846470-11846590 1.0000 120 chr3R:9675081-9675201 1.0000 120 chr3R:28904354-28904474 1.0000 120 chr3R:4052862-4052982 1.0000 120 chr2L:6553559-6553679 1.0000 120 chr3R:8784932-8785052 1.0000 120 chr3L:20276716-20276836 1.0000 120 chr3R:30501281-30501401 1.0000 120 chr2L:2731503-2731623 1.0000 120 chr3L:9614094-9614214 1.0000 120 chr3R:4962747-4962867 1.0000 120 chr3L:19190856-19190976 1.0000 120 chr2R:12229778-12229898 1.0000 120 chr3L:3455131-3455251 1.0000 120 chr3R:15816462-15816582 1.0000 120 chr3L:15252787-15252907 1.0000 120 chr2R:20641576-20641696 1.0000 120 chrX:8417153-8417273 1.0000 120 chr2L:3685306-3685426 1.0000 120 chr2R:14317151-14317271 1.0000 120 chr2R:22450420-22450540 1.0000 120 chrX:5889088-5889208 1.0000 120 chr2R:21851647-21851767 1.0000 120 chr3L:14969650-14969770 1.0000 120 chrX:8835197-8835317 1.0000 120 chr3R:23944040-23944160 1.0000 120 chrX:13630469-13630589 1.0000 120 chr3R:22719696-22719816 1.0000 120 chrX:10825500-10825620 1.0000 120 chr2L:20539334-20539454 1.0000 120 chr3R:29696489-29696609 1.0000 120 chr2R:6603123-6603243 1.0000 120 chrX:7415168-7415288 1.0000 120 chrX:6615610-6615730 1.0000 120 chr2L:1837822-1837942 1.0000 120 chrX:2037058-2037178 1.0000 120 chr3R:15644864-15644984 1.0000 120 chr3L:764429-764549 1.0000 120 chr2L:1316564-1316684 1.0000 120 chr2R:21771270-21771390 1.0000 120 chrX:5866284-5866404 1.0000 120 chr3R:30164200-30164320 1.0000 120 chrX:8677541-8677661 1.0000 120 chrX:5970007-5970127 1.0000 120 chr3L:7883447-7883567 1.0000 120 chrX:17229958-17230078 1.0000 120 chr3R:13469407-13469527 1.0000 120 chrX:6179560-6179680 1.0000 120 chr3R:13893019-13893139 1.0000 120 chr3L:1165858-1165978 1.0000 120 chr3L:2532546-2532666 1.0000 120 chr2L:19121058-19121178 1.0000 120 chrX:12221688-12221808 1.0000 120 chr3L:16768453-16768573 1.0000 120 chr2L:19200394-19200514 1.0000 120 chr4:1030999-1031119 1.0000 120 chr2L:3675900-3676020 1.0000 120 chr2R:21909947-21910067 1.0000 120 chrX:9119349-9119469 1.0000 120 chr3R:6229257-6229377 1.0000 120 chrX:8891048-8891168 1.0000 120 chrX:8542862-8542982 1.0000 120 chr2R:21514476-21514596 1.0000 120 chr2L:14499189-14499309 1.0000 120 chr3R:15293778-15293898 1.0000 120 chr3R:10648933-10649053 1.0000 120 chr2R:23202119-23202239 1.0000 120 chr2L:3587441-3587561 1.0000 120 chr3R:23526214-23526334 1.0000 120 chr3L:13845385-13845505 1.0000 120 chr3L:18357802-18357922 1.0000 120 chr2L:14160996-14161116 1.0000 120 chr2R:7077046-7077166 1.0000 120 chr2L:8732926-8733046 1.0000 120 chrX:16650567-16650687 1.0000 120 chr2L:15337357-15337477 1.0000 120 chr2L:14123811-14123931 1.0000 120 chr3R:13952448-13952568 1.0000 120 chr3R:27440684-27440804 1.0000 120 chr2L:3601028-3601148 1.0000 120 chr2L:6819464-6819584 1.0000 120 chr3L:19674456-19674576 1.0000 120 chrX:5671814-5671934 1.0000 120 chr3R:18988149-18988269 1.0000 120 chr2L:7635344-7635464 1.0000 120 chr3R:8744335-8744455 1.0000 120 chr3L:15234611-15234731 1.0000 120 chr2R:14783011-14783131 1.0000 120 chr3R:21887633-21887753 1.0000 120 chr3R:14356766-14356886 1.0000 120 chr2L:18441324-18441444 1.0000 120 chr2R:24893672-24893792 1.0000 120 chr3L:3875189-3875309 1.0000 120 chrX:18366699-18366819 1.0000 120 chrX:17465712-17465832 1.0000 120 chr3L:721152-721272 1.0000 120 chr3R:27826355-27826475 1.0000 120 chr3R:16309455-16309575 1.0000 120 chrX:4498419-4498539 1.0000 120 chr2L:20721626-20721746 1.0000 120 chr2L:15432389-15432509 1.0000 120 chr3R:29265268-29265388 1.0000 120 chr2R:5663820-5663940 1.0000 120 chr3L:908521-908641 1.0000 120 chrX:15591963-15592083 1.0000 120 chrX:7703125-7703245 1.0000 120 chrX:9893005-9893125 1.0000 120 chr2R:10013325-10013445 1.0000 120 chrX:16781273-16781393 1.0000 120 chr3R:23787401-23787521 1.0000 120 chr3R:11806959-11807079 1.0000 120 chr3R:12712438-12712558 1.0000 120 chr3R:13885160-13885280 1.0000 120 chrX:11137681-11137801 1.0000 120 chr3R:26859319-26859439 1.0000 120 chr2L:11950016-11950136 1.0000 120 chrX:13789130-13789250 1.0000 120 chr3R:29089842-29089962 1.0000 120 chrX:11146928-11147048 1.0000 120 chr2L:3598586-3598706 1.0000 120 chrX:771796-771916 1.0000 120 chr3R:15292406-15292526 1.0000 120 chr3L:22277321-22277441 1.0000 120 chr3R:5076349-5076469 1.0000 120 chr2L:19193860-19193980 1.0000 120 chrX:14622378-14622498 1.0000 120 chrX:10184789-10184909 1.0000 120 chr2R:18273508-18273628 1.0000 120 chr3L:8029525-8029645 1.0000 120 chrX:19964339-19964459 1.0000 120 chrX:7945489-7945609 1.0000 120 chr3L:3449790-3449910 1.0000 120 chr3L:8748965-8749085 1.0000 120 chr2R:22384558-22384678 1.0000 120 chr2R:19874612-19874732 1.0000 120 chr3L:16873342-16873462 1.0000 120 chrX:10325970-10326090 1.0000 120 chr2L:7154995-7155115 1.0000 120 chr2R:20906648-20906768 1.0000 120 chrX:19665972-19666092 1.0000 120 chr2R:18451045-18451165 1.0000 120 chr3R:17231652-17231772 1.0000 120 chrX:17820320-17820440 1.0000 120 chrX:12699244-12699364 1.0000 120 chrX:1083277-1083397 1.0000 120 chr2R:15754384-15754504 1.0000 120 chr2L:7376310-7376430 1.0000 120 chrX:10463211-10463331 1.0000 120 chr2R:9132371-9132491 1.0000 120 chr3R:19491138-19491258 1.0000 120 chr2L:19884629-19884749 1.0000 120 chrX:618755-618875 1.0000 120 chr3R:26121935-26122055 1.0000 120 chrX:5923319-5923439 1.0000 120 chr2L:7412299-7412419 1.0000 120 chrX:18239469-18239589 1.0000 120 chr3R:28857402-28857522 1.0000 120 chrX:17510668-17510788 1.0000 120 chr2L:3852266-3852386 1.0000 120 chr3R:21188063-21188183 1.0000 120 chr2R:21527395-21527515 1.0000 120 chr3L:13015294-13015414 1.0000 120 chr3R:6908224-6908344 1.0000 120 chrX:2166250-2166370 1.0000 120 chr3R:21408521-21408641 1.0000 120 chr2L:2162732-2162852 1.0000 120 chrX:17125089-17125209 1.0000 120 chr2R:23092225-23092345 1.0000 120 chr3L:16760401-16760521 1.0000 120 chr3R:6818737-6818857 1.0000 120 chrX:8491893-8492013 1.0000 120 chr2L:5245735-5245855 1.0000 120 chrX:4581895-4582015 1.0000 120 chr3R:8171659-8171779 1.0000 120 chrX:2978170-2978290 1.0000 120 chrX:18921029-18921149 1.0000 120 chr2L:18328921-18329041 1.0000 120 chr3R:19113930-19114050 1.0000 120 chrX:2136558-2136678 1.0000 120 chr3L:8751474-8751594 1.0000 120 chr3L:3851962-3852082 1.0000 120 chr2L:17583156-17583276 1.0000 120 chr3L:10745724-10745844 1.0000 120 chr3L:11429958-11430078 1.0000 120 chr2R:11809499-11809619 1.0000 120 chr3R:14357555-14357675 1.0000 120 chr2R:7636586-7636706 1.0000 120 chrX:4011008-4011128 1.0000 120 chr3R:9055263-9055383 1.0000 120 chr3L:11303971-11304091 1.0000 120 chr3L:19071629-19071749 1.0000 120 chr2L:3856438-3856558 1.0000 120 chrX:10387807-10387927 1.0000 120 chrX:14602696-14602816 1.0000 120 chr3L:772305-772425 1.0000 120 chr2L:8610922-8611042 1.0000 120 chrX:15738977-15739097 1.0000 120 chr3R:26235192-26235312 1.0000 120 chr2R:14803450-14803570 1.0000 120 chrX:4262786-4262906 1.0000 120 chr3R:26436653-26436773 1.0000 120 chr3R:11920777-11920897 1.0000 120 chr2L:7617007-7617127 1.0000 120 chr2R:11738636-11738756 1.0000 120 chrX:5968287-5968407 1.0000 120 chr3L:800171-800291 1.0000 120 chr3R:11617510-11617630 1.0000 120 chr2R:8914036-8914156 1.0000 120 chr3L:8440858-8440978 1.0000 120 chrX:18899991-18900111 1.0000 120 chr2R:9388636-9388756 1.0000 120 chrX:20631279-20631399 1.0000 120 chrX:17175895-17176015 1.0000 120 chr3L:13411159-13411279 1.0000 120 chr2L:11517200-11517320 1.0000 120 chrX:10086343-10086463 1.0000 120 chrX:13253226-13253346 1.0000 120 chr2L:14377051-14377171 1.0000 120 chr2R:13054989-13055109 1.0000 120 chr3R:16991918-16992038 1.0000 120 chr2L:19866999-19867119 1.0000 120 chrX:4540740-4540860 1.0000 120 chr2R:6707770-6707890 1.0000 120 chrX:5883524-5883644 1.0000 120 chrX:5639240-5639360 1.0000 120 chr3L:4413244-4413364 1.0000 120 chrX:7571354-7571474 1.0000 120 chrX:3690725-3690845 1.0000 120 chr3L:15235334-15235454 1.0000 120 chr2L:2494669-2494789 1.0000 120 chr2R:16097159-16097279 1.0000 120 chrX:17176686-17176806 1.0000 120 chr3L:15565946-15566066 1.0000 120 chr3L:4353895-4354015 1.0000 120 chrX:18774877-18774997 1.0000 120 chr3R:21499660-21499780 1.0000 120 chr3R:25168375-25168495 1.0000 120 chr2L:3444912-3445032 1.0000 120 chrX:2318480-2318600 1.0000 120 chr3R:11368774-11368894 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pnt/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pnt.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.317 C 0.184 G 0.18 T 0.319 Background letter frequencies (from file dataset with add-one prior applied): A 0.317 C 0.184 G 0.18 T 0.318 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RTGCACTG MEME-1 width = 8 sites = 15 llr = 157 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:::a::: pos.-specific C 1::a:a:: probability G 51a::::a matrix T 19::::a: bits 2.5 ** * * 2.2 ** * * 2.0 ** * * 1.7 ****** Relative 1.5 ****** Entropy 1.2 ******* (15.1 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGCACTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:15235334-15235454 65 6.33e-06 TCGGCCCACT GTGCACTG TGGGCCATTA chr2R:11738636-11738756 8 6.33e-06 AGGCCAA GTGCACTG AAAGAAAAGG chrX:17820320-17820440 41 6.33e-06 TCAGAATCGT GTGCACTG GCGCCACCTA chrX:13789130-13789250 105 6.33e-06 CTTCTTTGGA GTGCACTG TATTGTTT chr3R:26859319-26859439 18 6.33e-06 GCAACGCAGT GTGCACTG AGAGAAAAGG chr2R:21771270-21771390 20 6.33e-06 GGATGTGTGG GTGCACTG GGAGAAAAGA chr2R:22450420-22450540 15 6.33e-06 AGTACGACAA GTGCACTG CGAGAAATCG chr3R:21408521-21408641 82 1.75e-05 GAAGCAGTTG ATGCACTG CTTGCACATT chr2L:19884629-19884749 80 1.75e-05 CAACACTAAT ATGCACTG CTTATTTCTC chr2R:15754384-15754504 13 1.75e-05 GTGGATTTAG ATGCACTG AGGAAAACAA chrX:5866284-5866404 94 1.75e-05 CTTACGCAGT ATGCACTG TAAATCCCAT chrX:5889088-5889208 37 1.75e-05 CCATAAGCAG ATGCACTG ACAGAAATCG chrX:2136558-2136678 39 2.75e-05 CTTGTTTTAA CTGCACTG CCTACGTCGC chr2R:23092225-23092345 25 2.75e-05 ATGGGGGTTG GGGCACTG CATGAACTAC chr3L:13845385-13845505 109 3.87e-05 CATTCAGCAT TTGCACTG CTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15235334-15235454 6.3e-06 64_[+1]_48 chr2R:11738636-11738756 6.3e-06 7_[+1]_105 chrX:17820320-17820440 6.3e-06 40_[+1]_72 chrX:13789130-13789250 6.3e-06 104_[+1]_8 chr3R:26859319-26859439 6.3e-06 17_[+1]_95 chr2R:21771270-21771390 6.3e-06 19_[+1]_93 chr2R:22450420-22450540 6.3e-06 14_[+1]_98 chr3R:21408521-21408641 1.7e-05 81_[+1]_31 chr2L:19884629-19884749 1.7e-05 79_[+1]_33 chr2R:15754384-15754504 1.7e-05 12_[+1]_100 chrX:5866284-5866404 1.7e-05 93_[+1]_19 chrX:5889088-5889208 1.7e-05 36_[+1]_76 chrX:2136558-2136678 2.8e-05 38_[+1]_74 chr2R:23092225-23092345 2.8e-05 24_[+1]_88 chr3L:13845385-13845505 3.9e-05 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGCACTG width=8 seqs=15 chr3L:15235334-15235454 ( 65) GTGCACTG 1 chr2R:11738636-11738756 ( 8) GTGCACTG 1 chrX:17820320-17820440 ( 41) GTGCACTG 1 chrX:13789130-13789250 ( 105) GTGCACTG 1 chr3R:26859319-26859439 ( 18) GTGCACTG 1 chr2R:21771270-21771390 ( 20) GTGCACTG 1 chr2R:22450420-22450540 ( 15) GTGCACTG 1 chr3R:21408521-21408641 ( 82) ATGCACTG 1 chr2L:19884629-19884749 ( 80) ATGCACTG 1 chr2R:15754384-15754504 ( 13) ATGCACTG 1 chrX:5866284-5866404 ( 94) ATGCACTG 1 chrX:5889088-5889208 ( 37) ATGCACTG 1 chrX:2136558-2136678 ( 39) CTGCACTG 1 chr2R:23092225-23092345 ( 25) GGGCACTG 1 chr3L:13845385-13845505 ( 109) TTGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 2.1e+000 7 -146 156 -225 -1055 -1055 -143 155 -1055 -1055 247 -1055 -1055 244 -1055 -1055 166 -1055 -1055 -1055 -1055 244 -1055 -1055 -1055 -1055 -1055 165 -1055 -1055 247 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.1e+000 0.333333 0.066667 0.533333 0.066667 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGCACTG MEME-1 regular expression -------------------------------------------------------------------------------- [GA]TGCACTG -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF RKGGCGGC MEME-2 width = 8 sites = 17 llr = 164 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::11::: pos.-specific C :21:912a probability G 6599:98: matrix T :3:::::: bits 2.5 * 2.2 * * 2.0 * * * 1.7 ****** Relative 1.5 ****** Entropy 1.2 * ****** (13.9 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGGC consensus AT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4962747-4962867 80 1.15e-06 CTTCACTGTA GGGGCGGC GCCTAAAAGT chrX:8491893-8492013 93 6.39e-06 GGTGCCCACA GTGGCGGC GAGAAAAATG chrX:18239469-18239589 2 6.39e-06 T AGGGCGGC AAGTGCTGGC chrX:10463211-10463331 18 6.39e-06 TGCGAGGGAT GCGGCGGC GTTGCCACCC chr3L:9614094-9614214 81 7.57e-06 CCACACTTTT GGGGCGCC ACTAAGGTAA chrX:2136558-2136678 90 8.75e-06 GCTCCACTGT GGCGCGGC ATCACTTTTT chr3R:17231652-17231772 63 8.75e-06 TCGAGTCCGA GGCGCGGC AAGCTTAAGT chrX:5883524-5883644 61 1.44e-05 AGTCCGCCAG ATGGCGGC ACAGCATGAA chrX:11146928-11147048 32 1.44e-05 CGGAAAACCC ACGGCGGC TCTGACCCAC chr2L:18441324-18441444 93 1.98e-05 ACATGACACT GTGGCGCC ATTGCGGAGA chr3L:15234611-15234731 32 2.38e-05 GGGAAACGGC GGGGAGGC ACATAGTGCG chr2L:23332458-23332578 62 2.38e-05 ggcctataaa gggacggc gcaagtgcaa chrX:19665972-19666092 52 2.49e-05 CTCGCGGGCA GGGGCCGC GTTTTTTAAT chr2R:20906648-20906768 107 3.73e-05 CCAACGGTAG ATGGCGCC AGTGCA chr2L:14160996-14161116 44 3.73e-05 TCACACAGAG ATGGCGCC AACACTTAAC chr3L:1165858-1165978 12 5.55e-05 AAGAATTAAT GCGACGGC TGCCGTTGTC chr3L:3455131-3455251 28 5.55e-05 TAAACATACG AGGGAGGC TAAGTAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4962747-4962867 1.2e-06 79_[+2]_33 chrX:8491893-8492013 6.4e-06 92_[+2]_20 chrX:18239469-18239589 6.4e-06 1_[+2]_111 chrX:10463211-10463331 6.4e-06 17_[+2]_95 chr3L:9614094-9614214 7.6e-06 80_[+2]_32 chrX:2136558-2136678 8.7e-06 89_[+2]_23 chr3R:17231652-17231772 8.7e-06 62_[+2]_50 chrX:5883524-5883644 1.4e-05 60_[+2]_52 chrX:11146928-11147048 1.4e-05 31_[+2]_81 chr2L:18441324-18441444 2e-05 92_[+2]_20 chr3L:15234611-15234731 2.4e-05 31_[+2]_81 chr2L:23332458-23332578 2.4e-05 61_[+2]_51 chrX:19665972-19666092 2.5e-05 51_[+2]_61 chr2R:20906648-20906768 3.7e-05 106_[+2]_6 chr2L:14160996-14161116 3.7e-05 43_[+2]_69 chr3L:1165858-1165978 5.6e-05 11_[+2]_101 chr3L:3455131-3455251 5.6e-05 27_[+2]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RKGGCGGC width=8 seqs=17 chr3R:4962747-4962867 ( 80) GGGGCGGC 1 chrX:8491893-8492013 ( 93) GTGGCGGC 1 chrX:18239469-18239589 ( 2) AGGGCGGC 1 chrX:10463211-10463331 ( 18) GCGGCGGC 1 chr3L:9614094-9614214 ( 81) GGGGCGCC 1 chrX:2136558-2136678 ( 90) GGCGCGGC 1 chr3R:17231652-17231772 ( 63) GGCGCGGC 1 chrX:5883524-5883644 ( 61) ATGGCGGC 1 chrX:11146928-11147048 ( 32) ACGGCGGC 1 chr2L:18441324-18441444 ( 93) GTGGCGCC 1 chr3L:15234611-15234731 ( 32) GGGGAGGC 1 chr2L:23332458-23332578 ( 62) GGGACGGC 1 chrX:19665972-19666092 ( 52) GGGGCCGC 1 chr2R:20906648-20906768 ( 107) ATGGCGCC 1 chr2L:14160996-14161116 ( 44) ATGGCGCC 1 chr3L:1165858-1165978 ( 12) GCGACGGC 1 chr3L:3455131-3455251 ( 28) AGGGAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.3e+002 15 -1073 184 -1073 -1073 -6 155 -11 -1073 -64 229 -1073 -143 -1073 229 -1073 -143 226 -1073 -1073 -1073 -164 238 -1073 -1073 36 208 -1073 -1073 244 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.3e+002 0.352941 0.000000 0.647059 0.000000 0.000000 0.176471 0.529412 0.294118 0.000000 0.117647 0.882353 0.000000 0.117647 0.000000 0.882353 0.000000 0.117647 0.882353 0.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.235294 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RKGGCGGC MEME-2 regular expression -------------------------------------------------------------------------------- [GA][GT]GGCG[GC]C -------------------------------------------------------------------------------- Time 13.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCTGC MEME-3 width = 8 sites = 10 llr = 107 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C 1a::a::8 probability G 9::a::92 matrix T ::3::a1: bits 2.5 * ** 2.2 * ** 2.0 ** ** * 1.7 ** ***** Relative 1.5 ** ***** Entropy 1.2 ** ***** (15.4 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2978170-2978290 8 3.66e-06 TTAAAAA GCAGCTGC CTGCGAATGC chr3R:23787401-23787521 18 3.66e-06 TTTTCCAGGT GCAGCTGC ATCCGTTGGA chr2R:5663820-5663940 34 3.66e-06 AACACAAACG GCAGCTGC TCAGGTGGCG chrX:2037058-2037178 70 3.66e-06 TTGCTCATTT GCAGCTGC GGTGCTGCCT chr2R:12229778-12229898 67 3.66e-06 AAAAAAAAAA GCAGCTGC CAAGTTCAAG chr3L:13845385-13845505 64 7.34e-06 TACGAGACAA GCTGCTGC TCGAACGCAT chr3R:18988149-18988269 19 1.83e-05 AAAGATACAA GCTGCTGG TATCCAGAGA chr2L:3601028-3601148 36 1.83e-05 GAAATCCATT GCTGCTGG AAAACAGCTG chr2R:21909947-21910067 21 1.83e-05 GTTTGCTACT CCAGCTGC TGTCCATTGC chr3R:14357555-14357675 73 2.47e-05 ATTTTACTTT GCAGCTTC GCACATTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2978170-2978290 3.7e-06 7_[+3]_105 chr3R:23787401-23787521 3.7e-06 17_[+3]_95 chr2R:5663820-5663940 3.7e-06 33_[+3]_79 chrX:2037058-2037178 3.7e-06 69_[+3]_43 chr2R:12229778-12229898 3.7e-06 66_[+3]_46 chr3L:13845385-13845505 7.3e-06 63_[+3]_49 chr3R:18988149-18988269 1.8e-05 18_[+3]_94 chr2L:3601028-3601148 1.8e-05 35_[+3]_77 chr2R:21909947-21910067 1.8e-05 20_[+3]_92 chr3R:14357555-14357675 2.5e-05 72_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCTGC width=8 seqs=10 chrX:2978170-2978290 ( 8) GCAGCTGC 1 chr3R:23787401-23787521 ( 18) GCAGCTGC 1 chr2R:5663820-5663940 ( 34) GCAGCTGC 1 chrX:2037058-2037178 ( 70) GCAGCTGC 1 chr2R:12229778-12229898 ( 67) GCAGCTGC 1 chr3L:13845385-13845505 ( 64) GCTGCTGC 1 chr3R:18988149-18988269 ( 19) GCTGCTGG 1 chr2L:3601028-3601148 ( 36) GCTGCTGG 1 chr2R:21909947-21910067 ( 21) CCAGCTGC 1 chr3R:14357555-14357675 ( 73) GCAGCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 1.3e+003 -997 -88 232 -997 -997 244 -997 -997 114 -997 -997 -9 -997 -997 247 -997 -997 244 -997 -997 -997 -997 -997 165 -997 -997 232 -167 -997 212 15 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.3e+003 0.000000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCTGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[AT]GCTG[CG] -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CASTGYAS MEME-4 width = 8 sites = 23 llr = 211 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::7: pos.-specific C a:5::4:7 probability G ::5:a:33 matrix T :::a:6:: bits 2.5 * * 2.2 * * 2.0 * * 1.7 ** ** Relative 1.5 ***** * Entropy 1.2 ***** * (13.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACTGTAC consensus G CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3598586-3598706 8 6.59e-06 GGGATCA CACTGCAC GAAAAGAAAA chr3R:12712438-12712558 93 6.59e-06 ACCTTGTTCA CACTGCAC GCGCCTTTCT chr2L:2731503-2731623 113 1.30e-05 TCATTTCTCC CAGTGCAC chr2R:16097159-16097279 95 2.44e-05 CACCAGGTTC CACTGTAC TGAAACATTG chrX:17175895-17176015 112 2.44e-05 TTAACTTGAG CACTGTAC G chrX:13630469-13630589 75 2.44e-05 TTGTTCTGAA CACTGTAC TTGTTTTTTT chrX:4011008-4011128 100 3.56e-05 TCATTTCGCG CAGTGTAC AAACCGCCTT chr2L:18328921-18329041 81 3.56e-05 CAATTTTATG CAGTGTAC TACTACTGGA chr3R:13885160-13885280 96 3.56e-05 TCTGTTTTTT CAGTGTAC CTTATGCCAG chrX:16781273-16781393 84 3.56e-05 ATATTTTTTG CAGTGTAC GTAGGTTTCT chr3L:3875189-3875309 96 3.56e-05 AGTTTTCTCT CAGTGTAC ATTTAGATTT chrX:2166250-2166370 9 3.93e-05 CGCCGCAA CACTGCGC GAAAATGTGC chr2L:19866999-19867119 45 4.94e-05 TCTACCTTTC CACTGCAG TCGGTGTGAA chr2R:9132371-9132491 112 4.94e-05 AGTCTGGTCT CACTGCAG T chr2L:14499189-14499309 76 4.94e-05 GTATATATTC CAGTGCGC CTCAACATTT chrX:14622378-14622498 93 5.57e-05 TCATTTCTCA CAGTGCAG TCTTCCCAAG chr3R:14357555-14357675 96 6.22e-05 TTTGAGTGGC CACTGTGC TTGTGTGCCC chr3L:11429958-11430078 79 7.97e-05 AACACGATTG CAGTGTGC CTTTTGATCT chr3L:2532546-2532666 84 7.97e-05 ACTGTGTCTT CACTGTAG ATGTAGATGT chr3L:7883447-7883567 107 7.97e-05 CTTTTTTTTC CACTGTAG AGATAG chrX:12221688-12221808 108 9.06e-05 ATTTTTTTGC CAGTGTAG CAAGC chr3R:29696489-29696609 4 9.43e-05 CTA CACTGCGG AAAAATGTGA chrX:17465712-17465832 77 9.78e-05 TTTTTTCTCG CAGTGCGG CTAGAAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3598586-3598706 6.6e-06 7_[+4]_105 chr3R:12712438-12712558 6.6e-06 92_[+4]_20 chr2L:2731503-2731623 1.3e-05 112_[+4] chr2R:16097159-16097279 2.4e-05 94_[+4]_18 chrX:17175895-17176015 2.4e-05 111_[+4]_1 chrX:13630469-13630589 2.4e-05 74_[+4]_38 chrX:4011008-4011128 3.6e-05 99_[+4]_13 chr2L:18328921-18329041 3.6e-05 80_[+4]_32 chr3R:13885160-13885280 3.6e-05 95_[+4]_17 chrX:16781273-16781393 3.6e-05 83_[+4]_29 chr3L:3875189-3875309 3.6e-05 95_[+4]_17 chrX:2166250-2166370 3.9e-05 8_[+4]_104 chr2L:19866999-19867119 4.9e-05 44_[+4]_68 chr2R:9132371-9132491 4.9e-05 111_[+4]_1 chr2L:14499189-14499309 4.9e-05 75_[+4]_37 chrX:14622378-14622498 5.6e-05 92_[+4]_20 chr3R:14357555-14357675 6.2e-05 95_[+4]_17 chr3L:11429958-11430078 8e-05 78_[+4]_34 chr3L:2532546-2532666 8e-05 83_[+4]_29 chr3L:7883447-7883567 8e-05 106_[+4]_6 chrX:12221688-12221808 9.1e-05 107_[+4]_5 chr3R:29696489-29696609 9.4e-05 3_[+4]_109 chrX:17465712-17465832 9.8e-05 76_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGYAS width=8 seqs=23 chr2L:3598586-3598706 ( 8) CACTGCAC 1 chr3R:12712438-12712558 ( 93) CACTGCAC 1 chr2L:2731503-2731623 ( 113) CAGTGCAC 1 chr2R:16097159-16097279 ( 95) CACTGTAC 1 chrX:17175895-17176015 ( 112) CACTGTAC 1 chrX:13630469-13630589 ( 75) CACTGTAC 1 chrX:4011008-4011128 ( 100) CAGTGTAC 1 chr2L:18328921-18329041 ( 81) CAGTGTAC 1 chr3R:13885160-13885280 ( 96) CAGTGTAC 1 chrX:16781273-16781393 ( 84) CAGTGTAC 1 chr3L:3875189-3875309 ( 96) CAGTGTAC 1 chrX:2166250-2166370 ( 9) CACTGCGC 1 chr2L:19866999-19867119 ( 45) CACTGCAG 1 chr2R:9132371-9132491 ( 112) CACTGCAG 1 chr2L:14499189-14499309 ( 76) CAGTGCGC 1 chrX:14622378-14622498 ( 93) CAGTGCAG 1 chr3R:14357555-14357675 ( 96) CACTGTGC 1 chr3L:11429958-11430078 ( 79) CAGTGTGC 1 chr3L:2532546-2532666 ( 84) CACTGTAG 1 chr3L:7883447-7883567 ( 107) CACTGTAG 1 chrX:12221688-12221808 ( 108) CAGTGTAG 1 chr3R:29696489-29696609 ( 4) CACTGCGG 1 chrX:17465712-17465832 ( 77) CAGTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 4.2e+003 -1117 244 -1117 -1117 166 -1117 -1117 -1117 -1117 150 141 -1117 -1117 -1117 -1117 165 -1117 -1117 247 -1117 -1117 124 -1117 83 122 -1117 53 -1117 -1117 183 95 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.2e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.521739 0.478261 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.434783 0.000000 0.565217 0.739130 0.000000 0.260870 0.000000 0.000000 0.652174 0.347826 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYAS MEME-4 regular expression -------------------------------------------------------------------------------- CA[CG]TG[TC][AG][CG] -------------------------------------------------------------------------------- Time 26.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGGCGC MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:a probability G aa:aa:a: matrix T ::a::::: bits 2.5 ** ***** 2.2 ** ***** 2.0 ** ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTGGCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18239469-18239589 71 2.03e-06 CAAGCCGCTA GGTGGCGC TATGCAGTCA chr3L:8748965-8749085 60 2.03e-06 CTCACACATA GGTGGCGC ATTCTGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18239469-18239589 2e-06 70_[+5]_42 chr3L:8748965-8749085 2e-06 59_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCGC width=8 seqs=2 chrX:18239469-18239589 ( 71) GGTGGCGC 1 chr3L:8748965-8749085 ( 60) GGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.1e+004 -765 -765 246 -765 -765 -765 246 -765 -765 -765 -765 165 -765 -765 246 -765 -765 -765 246 -765 -765 244 -765 -765 -765 -765 246 -765 -765 244 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-5 regular expression -------------------------------------------------------------------------------- GGTGGCGC -------------------------------------------------------------------------------- Time 32.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29699354-29699474 9.92e-01 120 chr3L:8853017-8853137 3.21e-01 120 chr3R:26242595-26242715 4.50e-01 120 chr2L:5453265-5453385 4.16e-03 109_[+5(7.07e-05)]_3 chrX:873839-873959 6.78e-01 120 chr2L:4292734-4292854 1.00e+00 120 chr2R:23997239-23997359 2.95e-02 120 chr2L:7149008-7149128 5.48e-01 120 chrX:16105841-16105961 5.88e-01 120 chr2L:23332458-23332578 1.75e-03 61_[+2(2.38e-05)]_51 chrX:11846470-11846590 9.65e-01 120 chr3R:9675081-9675201 5.10e-01 120 chr3R:28904354-28904474 6.26e-01 120 chr3R:4052862-4052982 9.98e-01 120 chr2L:6553559-6553679 9.95e-01 120 chr3R:8784932-8785052 9.79e-01 120 chr3L:20276716-20276836 1.22e-01 120 chr3R:30501281-30501401 5.74e-01 120 chr2L:2731503-2731623 4.78e-03 112_[+4(1.30e-05)] chr3L:9614094-9614214 1.20e-03 80_[+2(7.57e-06)]_32 chr3R:4962747-4962867 1.40e-07 79_[+2(1.15e-06)]_33 chr3L:19190856-19190976 9.83e-01 120 chr2R:12229778-12229898 3.40e-02 66_[+3(3.66e-06)]_46 chr3L:3455131-3455251 8.40e-02 27_[+2(5.55e-05)]_85 chr3R:15816462-15816582 1.41e-01 120 chr3L:15252787-15252907 6.64e-01 120 chr2R:20641576-20641696 7.59e-01 120 chrX:8417153-8417273 6.72e-01 120 chr2L:3685306-3685426 9.73e-01 120 chr2R:14317151-14317271 9.09e-01 120 chr2R:22450420-22450540 2.24e-02 14_[+1(6.33e-06)]_98 chrX:5889088-5889208 4.39e-03 36_[+1(1.75e-05)]_76 chr2R:21851647-21851767 4.80e-01 120 chr3L:14969650-14969770 5.20e-03 120 chrX:8835197-8835317 6.88e-01 120 chr3R:23944040-23944160 5.32e-02 22_[+3(2.47e-05)]_90 chrX:13630469-13630589 2.70e-02 74_[+4(2.44e-05)]_38 chr3R:22719696-22719816 6.82e-01 120 chrX:10825500-10825620 8.42e-01 120 chr2L:20539334-20539454 7.52e-01 120 chr3R:29696489-29696609 5.29e-02 3_[+4(9.43e-05)]_109 chr2R:6603123-6603243 1.70e-01 120 chrX:7415168-7415288 7.74e-01 120 chrX:6615610-6615730 9.51e-01 120 chr2L:1837822-1837942 8.20e-01 120 chrX:2037058-2037178 5.65e-04 69_[+3(3.66e-06)]_43 chr3R:15644864-15644984 2.89e-01 120 chr3L:764429-764549 1.20e-01 120 chr2L:1316564-1316684 9.98e-01 120 chr2R:21771270-21771390 1.90e-02 19_[+1(6.33e-06)]_93 chrX:5866284-5866404 1.00e-02 93_[+1(1.75e-05)]_19 chr3R:30164200-30164320 9.09e-01 120 chrX:8677541-8677661 6.89e-01 120 chrX:5970007-5970127 9.95e-01 120 chr3L:7883447-7883567 1.38e-01 106_[+4(7.97e-05)]_6 chrX:17229958-17230078 9.00e-01 120 chr3R:13469407-13469527 7.50e-01 120 chrX:6179560-6179680 8.23e-01 120 chr3R:13893019-13893139 8.63e-01 120 chr3L:1165858-1165978 3.52e-02 11_[+2(5.55e-05)]_101 chr3L:2532546-2532666 8.61e-02 83_[+4(7.97e-05)]_29 chr2L:19121058-19121178 9.90e-01 120 chrX:12221688-12221808 9.31e-02 107_[+4(9.06e-05)]_5 chr3L:16768453-16768573 8.53e-02 120 chr2L:19200394-19200514 8.19e-01 120 chr4:1030999-1031119 6.12e-01 120 chr2L:3675900-3676020 7.10e-01 120 chr2R:21909947-21910067 1.18e-04 20_[+3(1.83e-05)]_15_[+1(4.50e-05)]_\ 69 chrX:9119349-9119469 9.65e-01 120 chr3R:6229257-6229377 7.40e-01 120 chrX:8891048-8891168 8.61e-02 120 chrX:8542862-8542982 8.79e-01 120 chr2R:21514476-21514596 6.40e-01 120 chr2L:14499189-14499309 6.71e-02 75_[+4(4.94e-05)]_37 chr3R:15293778-15293898 6.25e-01 120 chr3R:10648933-10649053 1.88e-01 120 chr2R:23202119-23202239 5.05e-01 120 chr2L:3587441-3587561 9.78e-01 120 chr3R:23526214-23526334 4.30e-01 120 chr3L:13845385-13845505 2.85e-04 63_[+3(7.34e-06)]_37_[+1(3.87e-05)]_\ 4 chr3L:18357802-18357922 7.17e-01 120 chr2L:14160996-14161116 3.13e-03 43_[+2(3.73e-05)]_69 chr2R:7077046-7077166 3.73e-02 120 chr2L:8732926-8733046 9.91e-01 120 chrX:16650567-16650687 5.82e-01 120 chr2L:15337357-15337477 8.63e-01 120 chr2L:14123811-14123931 2.27e-01 120 chr3R:13952448-13952568 9.35e-01 120 chr3R:27440684-27440804 5.51e-01 120 chr2L:3601028-3601148 7.40e-02 35_[+3(1.83e-05)]_77 chr2L:6819464-6819584 3.09e-01 120 chr3L:19674456-19674576 6.38e-01 120 chrX:5671814-5671934 9.15e-02 120 chr3R:18988149-18988269 8.44e-02 18_[+3(1.83e-05)]_94 chr2L:7635344-7635464 3.81e-01 120 chr3R:8744335-8744455 9.37e-01 120 chr3L:15234611-15234731 1.99e-05 31_[+2(2.38e-05)]_53_[+3(4.86e-05)]_\ 20 chr2R:14783011-14783131 7.87e-01 120 chr3R:21887633-21887753 1.89e-01 120 chr3R:14356766-14356886 9.02e-01 120 chr2L:18441324-18441444 1.21e-04 92_[+2(1.98e-05)]_20 chr2R:24893672-24893792 6.52e-01 120 chr3L:3875189-3875309 1.70e-01 95_[+4(3.56e-05)]_17 chrX:18366699-18366819 4.99e-01 120 chrX:17465712-17465832 4.12e-02 76_[+4(9.78e-05)]_36 chr3L:721152-721272 9.42e-01 120 chr3R:27826355-27826475 5.56e-01 120 chr3R:16309455-16309575 6.38e-01 120 chrX:4498419-4498539 9.11e-01 120 chr2L:20721626-20721746 6.50e-01 120 chr2L:15432389-15432509 9.46e-01 120 chr3R:29265268-29265388 7.60e-01 120 chr2R:5663820-5663940 5.35e-05 33_[+3(3.66e-06)]_3_[+5(7.07e-05)]_\ 68 chr3L:908521-908641 7.82e-01 120 chrX:15591963-15592083 9.32e-01 120 chrX:7703125-7703245 1.00e+00 120 chrX:9893005-9893125 5.10e-01 120 chr2R:10013325-10013445 3.25e-01 120 chrX:16781273-16781393 2.19e-03 83_[+4(3.56e-05)]_29 chr3R:23787401-23787521 1.76e-04 17_[+3(3.66e-06)]_95 chr3R:11806959-11807079 1.47e-01 120 chr3R:12712438-12712558 1.62e-02 92_[+4(6.59e-06)]_20 chr3R:13885160-13885280 1.17e-02 52_[+3(4.50e-05)]_35_[+4(3.56e-05)]_\ 17 chrX:11137681-11137801 2.66e-01 120 chr3R:26859319-26859439 4.11e-03 17_[+1(6.33e-06)]_95 chr2L:11950016-11950136 1.79e-01 120 chrX:13789130-13789250 5.11e-03 104_[+1(6.33e-06)]_8 chr3R:29089842-29089962 5.95e-01 120 chrX:11146928-11147048 1.37e-03 31_[+2(1.44e-05)]_81 chr2L:3598586-3598706 6.00e-02 7_[+4(6.59e-06)]_105 chrX:771796-771916 2.14e-01 120 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************