******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pita.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:12547089-12547209 1.0000 120 chr3L:6995079-6995199 1.0000 120 chr2R:11435670-11435790 1.0000 120 chrX:337021-337141 1.0000 120 chr3L:6103794-6103914 1.0000 120 chr3L:10320943-10321063 1.0000 120 chrX:8838003-8838123 1.0000 120 chr3L:4805935-4806055 1.0000 120 chrX:8407794-8407914 1.0000 120 chr3L:22616937-22617057 1.0000 120 chr3L:14513355-14513475 1.0000 120 chr2L:2724568-2724688 1.0000 120 chrX:16753249-16753369 1.0000 120 chr2L:5624182-5624302 1.0000 120 chr3L:15516098-15516218 1.0000 120 chr3L:10427478-10427598 1.0000 120 chr3L:15048271-15048391 1.0000 120 chr2L:16333955-16334075 1.0000 120 chr3R:11694864-11694984 1.0000 120 chr3R:5200788-5200908 1.0000 120 chr3L:10225461-10225581 1.0000 120 chr3L:21953152-21953272 1.0000 120 chr3L:16741789-16741909 1.0000 120 chr3L:714109-714229 1.0000 120 chrX:3841544-3841664 1.0000 120 chrX:4363463-4363583 1.0000 120 chrX:1560185-1560305 1.0000 120 chrX:1187098-1187218 1.0000 120 chr2L:16848885-16849005 1.0000 120 chr2R:18193256-18193376 1.0000 120 chr3R:5326318-5326438 1.0000 120 chr3L:5083408-5083528 1.0000 120 chrX:17884664-17884784 1.0000 120 chrX:20792210-20792330 1.0000 120 chr3L:6619198-6619318 1.0000 120 chrX:3252780-3252900 1.0000 120 chr3L:15264247-15264367 1.0000 120 chr3R:30121853-30121973 1.0000 120 chr3R:32006520-32006640 1.0000 120 chr3R:27547501-27547621 1.0000 120 chr2R:21972736-21972856 1.0000 120 chr3R:16620074-16620194 1.0000 120 chr2R:11407981-11408101 1.0000 120 chrX:6802511-6802631 1.0000 120 chr3R:23522440-23522560 1.0000 120 chrX:3285423-3285543 1.0000 120 chr2R:17927187-17927307 1.0000 120 chrX:14874773-14874893 1.0000 120 chr3L:6995498-6995618 1.0000 120 chr2L:9657460-9657580 1.0000 120 chr2R:25038623-25038743 1.0000 120 chr3L:868951-869071 1.0000 120 chr2L:20835646-20835766 1.0000 120 chr2R:25039009-25039129 1.0000 120 chr3L:22958327-22958447 1.0000 120 chrX:16063053-16063173 1.0000 120 chrX:12764774-12764894 1.0000 120 chrX:1821171-1821291 1.0000 120 chrX:1517219-1517339 1.0000 120 chr2R:6017012-6017132 1.0000 120 chr3L:9054920-9055040 1.0000 120 chr3L:10246528-10246648 1.0000 120 chr3R:20059082-20059202 1.0000 120 chrX:8721695-8721815 1.0000 120 chr2L:22179739-22179859 1.0000 120 chrX:8148700-8148820 1.0000 120 chrX:15840194-15840314 1.0000 120 chrX:945865-945985 1.0000 120 chrX:1010038-1010158 1.0000 120 chr3L:14445871-14445991 1.0000 120 chrX:9040998-9041118 1.0000 120 chrX:16063264-16063384 1.0000 120 chr2L:35605-35725 1.0000 120 chr3L:6995285-6995405 1.0000 120 chr2R:2079789-2079909 1.0000 120 chr3L:11041382-11041502 1.0000 120 chr2L:14972967-14973087 1.0000 120 chr2L:17715985-17716105 1.0000 120 chr2R:13043702-13043822 1.0000 120 chr3R:30870624-30870744 1.0000 120 chr2R:22297874-22297994 1.0000 120 chr2R:11408306-11408426 1.0000 120 chrX:351131-351251 1.0000 120 chr2L:21251324-21251444 1.0000 120 chrX:1286259-1286379 1.0000 120 chr2R:22596448-22596568 1.0000 120 chr2R:6089081-6089201 1.0000 120 chrX:8721896-8722016 1.0000 120 chr3L:14446072-14446192 1.0000 120 chr2L:6356804-6356924 1.0000 120 chrX:1819096-1819216 1.0000 120 chr2L:14094425-14094545 1.0000 120 chr2L:4852669-4852789 1.0000 120 chrX:17629476-17629596 1.0000 120 chr2L:18714244-18714364 1.0000 120 chr2R:17639691-17639811 1.0000 120 chr3L:22940377-22940497 1.0000 120 chr3R:4969385-4969505 1.0000 120 chrX:5817347-5817467 1.0000 120 chr2L:15306997-15307117 1.0000 120 chr3R:30527456-30527576 1.0000 120 chr3L:22634260-22634380 1.0000 120 chr2L:2195488-2195608 1.0000 120 chrX:6728865-6728985 1.0000 120 chrX:21605686-21605806 1.0000 120 chr2R:9094695-9094815 1.0000 120 chr2L:16859777-16859897 1.0000 120 chr2R:10252682-10252802 1.0000 120 chr2R:22298081-22298201 1.0000 120 chrX:3726136-3726256 1.0000 120 chr2L:11948618-11948738 1.0000 120 chrX:12202847-12202967 1.0000 120 chr3R:16180583-16180703 1.0000 120 chr3L:9751792-9751912 1.0000 120 chr3L:15146689-15146809 1.0000 120 chr3L:17669640-17669760 1.0000 120 chr2R:18754713-18754833 1.0000 120 chr3L:10321847-10321967 1.0000 120 chr2L:7811101-7811221 1.0000 120 chrX:21175001-21175121 1.0000 120 chr3L:9752009-9752129 1.0000 120 chrX:5954227-5954347 1.0000 120 chr2R:11410888-11411008 1.0000 120 chrX:4699525-4699645 1.0000 120 chr2L:19590743-19590863 1.0000 120 chrX:7162283-7162403 1.0000 120 chr3L:15637077-15637197 1.0000 120 chr3R:31231278-31231398 1.0000 120 chr3R:23522641-23522761 1.0000 120 chr2R:16783367-16783487 1.0000 120 chrX:1201023-1201143 1.0000 120 chr3R:27651836-27651956 1.0000 120 chrX:123946-124066 1.0000 120 chr2R:15424389-15424509 1.0000 120 chr3L:14212824-14212944 1.0000 120 chr3R:6706462-6706582 1.0000 120 chr2R:8992384-8992504 1.0000 120 chr2L:15096878-15096998 1.0000 120 chr3L:16051333-16051453 1.0000 120 chr2L:2957134-2957254 1.0000 120 chr3R:27657025-27657145 1.0000 120 chr3L:2885700-2885820 1.0000 120 chr2L:5270383-5270503 1.0000 120 chr2L:16852721-16852841 1.0000 120 chrX:11434090-11434210 1.0000 120 chr3R:12650669-12650789 1.0000 120 chr2L:20851722-20851842 1.0000 120 chr3R:20464475-20464595 1.0000 120 chrX:17790284-17790404 1.0000 120 chr3L:9047234-9047354 1.0000 120 chr3L:22470394-22470514 1.0000 120 chr3L:11224775-11224895 1.0000 120 chr2L:8326980-8327100 1.0000 120 chr3L:13860160-13860280 1.0000 120 chr3L:1971165-1971285 1.0000 120 chrX:8210754-8210874 1.0000 120 chrX:2112811-2112931 1.0000 120 chrX:1287145-1287265 1.0000 120 chrX:12035352-12035472 1.0000 120 chrX:843694-843814 1.0000 120 chr2L:576897-577017 1.0000 120 chr3L:20104059-20104179 1.0000 120 chr3L:6689077-6689197 1.0000 120 chrX:18621973-18622093 1.0000 120 chr2L:12133555-12133675 1.0000 120 chr2L:19378723-19378843 1.0000 120 chr3R:16351171-16351291 1.0000 120 chr3L:248209-248329 1.0000 120 chrX:18805127-18805247 1.0000 120 chr3R:4705253-4705373 1.0000 120 chr3R:15913281-15913401 1.0000 120 chr3R:15493364-15493484 1.0000 120 chr2L:1006698-1006818 1.0000 120 chr2L:11172099-11172219 1.0000 120 chr2L:17734796-17734916 1.0000 120 chr3L:4840265-4840385 1.0000 120 chrX:18137962-18138082 1.0000 120 chr2L:14288012-14288132 1.0000 120 chr3R:30467179-30467299 1.0000 120 chrX:10728650-10728770 1.0000 120 chrX:18018627-18018747 1.0000 120 chr3L:15268347-15268467 1.0000 120 chr2R:18553836-18553956 1.0000 120 chr3R:11344074-11344194 1.0000 120 chr2R:22293240-22293360 1.0000 120 chr3R:6709799-6709919 1.0000 120 chrX:17695752-17695872 1.0000 120 chr2R:8797790-8797910 1.0000 120 chr3L:12732876-12732996 1.0000 120 chr3L:5343438-5343558 1.0000 120 chr3R:21889333-21889453 1.0000 120 chr2L:16223878-16223998 1.0000 120 chrX:15292923-15293043 1.0000 120 chrX:20632265-20632385 1.0000 120 chr3L:6234315-6234435 1.0000 120 chr3L:4840551-4840671 1.0000 120 chrX:18704027-18704147 1.0000 120 chrX:10330091-10330211 1.0000 120 chr3R:30870825-30870945 1.0000 120 chr2L:19393891-19394011 1.0000 120 chrX:15175215-15175335 1.0000 120 chr3R:13674814-13674934 1.0000 120 chr2L:9612776-9612896 1.0000 120 chr2L:19915352-19915472 1.0000 120 chr2L:1118265-1118385 1.0000 120 chr3L:12857723-12857843 1.0000 120 chr3R:16898538-16898658 1.0000 120 chrX:3841745-3841865 1.0000 120 chr2R:8665388-8665508 1.0000 120 chr3R:6009715-6009835 1.0000 120 chr3L:4626446-4626566 1.0000 120 chrX:2113015-2113135 1.0000 120 chr2R:6037745-6037865 1.0000 120 chrX:19326876-19326996 1.0000 120 chr2R:7940567-7940687 1.0000 120 chr3L:9442685-9442805 1.0000 120 chr3R:4905936-4906056 1.0000 120 chrX:12764974-12765094 1.0000 120 chrX:2524605-2524725 1.0000 120 chrX:18321489-18321609 1.0000 120 chr3R:19017360-19017480 1.0000 120 chr2R:25190176-25190296 1.0000 120 chr3R:7644555-7644675 1.0000 120 chr3L:10463258-10463378 1.0000 120 chr3L:2228749-2228869 1.0000 120 chr3L:16930619-16930739 1.0000 120 chr3R:4969588-4969708 1.0000 120 chr3R:19014166-19014286 1.0000 120 chr2L:18776697-18776817 1.0000 120 chr2R:7186674-7186794 1.0000 120 chr3L:15268142-15268262 1.0000 120 chrX:11520408-11520528 1.0000 120 chrX:7967158-7967278 1.0000 120 chr2R:10252881-10253001 1.0000 120 chr3R:13833639-13833759 1.0000 120 chr2L:21397357-21397477 1.0000 120 chr3L:12067039-12067159 1.0000 120 chr3R:25591593-25591713 1.0000 120 chr4:90066-90186 1.0000 120 chr3L:18460452-18460572 1.0000 120 chr2R:18807667-18807787 1.0000 120 chrX:18805326-18805446 1.0000 120 chr4:89860-89980 1.0000 120 chr3L:332613-332733 1.0000 120 chr2R:16871988-16872108 1.0000 120 chr3L:12066800-12066920 1.0000 120 chr3L:710884-711004 1.0000 120 chrX:11347943-11348063 1.0000 120 chr2R:6810468-6810588 1.0000 120 chrX:19325893-19326013 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pita/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pita.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.195 G 0.187 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.195 G 0.187 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CWCAAACC MEME-1 width = 8 sites = 47 llr = 420 E-value = 3.9e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6:899:: pos.-specific C 9:a:11aa probability G :::2:::: matrix T 14:::::: bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * * ** Relative 1.4 * * ** Entropy 1.2 * ****** (12.9 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAAACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15175215-15175335 54 1.30e-05 TTAGCCGTGA CACAAACC GTCAGTCGGA chr3R:21889333-21889453 18 1.30e-05 ACAGCTTGGA CACAAACC AATTTACATG chr3R:30467179-30467299 62 1.30e-05 TTAGCACGGA CACAAACC TCATTTAGCC chr2L:11172099-11172219 76 1.30e-05 TTAGCGAGTA CACAAACC ACAATCTAGA chr3L:11224775-11224895 62 1.30e-05 TTAGCACGGA CACAAACC CATTTACAAA chr2R:18754713-18754833 64 1.30e-05 AACTTTTGGA CACAAACC TGTGTAAATT chrX:8721695-8721815 78 1.30e-05 CTTTCCAGGG CACAAACC AAATTTAGTG chr3L:868951-869071 93 1.30e-05 ccaccaatgc cacaaacc accaaaaccc chr3R:30121853-30121973 75 1.30e-05 TTATCGGAGA CACAAACC ATGGACAGTG chr3L:714109-714229 28 1.30e-05 GATCGCTGAG CACAAACC TTTTTTGGGA chrX:19325893-19326013 111 2.61e-05 GAACTTTAAA CTCAAACC CA chr2L:19915352-19915472 34 2.61e-05 GTATCTGGTA CTCAAACC TAAGTCTCCA chrX:17790284-17790404 48 2.61e-05 TTAGCACAGA CTCAAACC ACGAGCAACC chrX:123946-124066 41 2.61e-05 GTTTCGGAGA CTCAAACC ATATAGAACC chrX:17629476-17629596 82 2.61e-05 AAAGCTTGGA CTCAAACC ATTGGCGCCC chr2L:4852669-4852789 65 2.61e-05 TAAGTTCGGA CTCAAACC AAACCGGTTA chr2L:6356804-6356924 3 2.61e-05 GG CTCAAACC CCTTTAAATT chrX:12764774-12764894 23 2.61e-05 AAAGCTGAGA CTCAAACC CAATGCCAGC chr3L:10225461-10225581 106 2.61e-05 CCAGTAAAGA CTCAAACC TACGAGC chr3R:16898538-16898658 18 3.40e-05 GCAGTGAAGA CACGAACC CCAAGGACGC chrX:18137962-18138082 42 3.40e-05 CATTCAAAGG CACGAACC ACAGTGTCAA chr2L:7811101-7811221 3 3.40e-05 GA CACGAACC GCGATGTATT chr2L:15306997-15307117 11 3.40e-05 TCATCTTGTA CACGAACC TTTCCTTCAG chr2L:16848885-16849005 96 3.40e-05 TTAGCAAAGT CACGAACC AATACCAACC chr3R:11694864-11694984 63 3.40e-05 ACAGCCGTGA CACGAACC GTTTTCGGAA chr2L:11948618-11948738 62 4.20e-05 GCCTCATAGG CTCGAACC AAAACAGTTT chr2L:2724568-2724688 25 4.20e-05 ATAGCGTAGA CTCGAACC AAACCTTACG chr2L:18776697-18776817 85 5.02e-05 TAAGCCAAGA CACAACCC TCAAAAGTGT chr3L:15146689-15146809 44 5.02e-05 TTATCGAAGA CACAACCC ACAAGTAACG chrX:351131-351251 2 5.02e-05 A CACAACCC ATTATTTTCG chrX:1517219-1517339 97 5.02e-05 ATCAAGGACG CACAACCC GAAGCCCGAT chrX:19326876-19326996 91 5.84e-05 ACAGCCTAGA CACACACC AGTAAAACTG chr2L:14288012-14288132 85 5.84e-05 AAAGCCGGGG CACACACC AGCCAAGACA chr2L:19378723-19378843 92 5.84e-05 ACACCAAACC CACACACC AGCCAGATAC chr2L:19590743-19590863 33 6.67e-05 ATCCTTAGTT CTCAACCC CTAAGTATTC chrX:1819096-1819216 37 6.67e-05 GAAGCAAATA CTCAACCC TGGTGCGGAA chr3L:10463258-10463378 78 7.50e-05 TTAGCGAAGG CTCACACC AAGGTTGCTA chr2R:2079789-2079909 33 9.57e-05 cactactact tacaaacc gcgatcttta chr3R:16351171-16351291 34 1.06e-04 CACTATAGAC CACGCACC AGCAATAGGT chr3R:13833639-13833759 71 1.27e-04 TTAGCTAGTT TTCAAACC CAAAGTGATC chr2L:19393891-19394011 59 1.27e-04 AAAGAGAAGT TTCAAACC AATGGGAATA chrX:17695752-17695872 54 1.27e-04 TTAGCTGAGT TTCAAACC ACATTCCCGT chr3L:2885700-2885820 25 1.27e-04 ATATCATGTA TTCAAACC ATGCACGTTC chr2L:16859777-16859897 45 1.27e-04 CTAGCGAAGC TTCAAACC AGTTGTCGGC chrX:6802511-6802631 80 1.27e-04 TTATCCAGGT TTCAAACC ATATAAATTT chr2R:9094695-9094815 99 1.42e-04 GCACCtttgc cacacccc tccttataat chr2R:18193256-18193376 107 1.50e-04 TTAGCCAAGA CGCAAACC CTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15175215-15175335 1.3e-05 53_[+1]_59 chr3R:21889333-21889453 1.3e-05 17_[+1]_95 chr3R:30467179-30467299 1.3e-05 61_[+1]_51 chr2L:11172099-11172219 1.3e-05 75_[+1]_37 chr3L:11224775-11224895 1.3e-05 61_[+1]_51 chr2R:18754713-18754833 1.3e-05 63_[+1]_49 chrX:8721695-8721815 1.3e-05 77_[+1]_35 chr3L:868951-869071 1.3e-05 92_[+1]_20 chr3R:30121853-30121973 1.3e-05 74_[+1]_38 chr3L:714109-714229 1.3e-05 27_[+1]_85 chrX:19325893-19326013 2.6e-05 110_[+1]_2 chr2L:19915352-19915472 2.6e-05 33_[+1]_79 chrX:17790284-17790404 2.6e-05 47_[+1]_65 chrX:123946-124066 2.6e-05 40_[+1]_72 chrX:17629476-17629596 2.6e-05 81_[+1]_31 chr2L:4852669-4852789 2.6e-05 64_[+1]_48 chr2L:6356804-6356924 2.6e-05 2_[+1]_110 chrX:12764774-12764894 2.6e-05 22_[+1]_90 chr3L:10225461-10225581 2.6e-05 105_[+1]_7 chr3R:16898538-16898658 3.4e-05 17_[+1]_95 chrX:18137962-18138082 3.4e-05 41_[+1]_71 chr2L:7811101-7811221 3.4e-05 2_[+1]_110 chr2L:15306997-15307117 3.4e-05 10_[+1]_102 chr2L:16848885-16849005 3.4e-05 95_[+1]_17 chr3R:11694864-11694984 3.4e-05 62_[+1]_50 chr2L:11948618-11948738 4.2e-05 61_[+1]_51 chr2L:2724568-2724688 4.2e-05 24_[+1]_88 chr2L:18776697-18776817 5e-05 84_[+1]_28 chr3L:15146689-15146809 5e-05 43_[+1]_69 chrX:351131-351251 5e-05 1_[+1]_111 chrX:1517219-1517339 5e-05 96_[+1]_16 chrX:19326876-19326996 5.8e-05 90_[+1]_22 chr2L:14288012-14288132 5.8e-05 84_[+1]_28 chr2L:19378723-19378843 5.8e-05 91_[+1]_21 chr2L:19590743-19590863 6.7e-05 32_[+1]_80 chrX:1819096-1819216 6.7e-05 36_[+1]_76 chr3L:10463258-10463378 7.5e-05 77_[+1]_35 chr2R:2079789-2079909 9.6e-05 32_[+1]_80 chr3R:16351171-16351291 0.00011 33_[+1]_79 chr3R:13833639-13833759 0.00013 70_[+1]_42 chr2L:19393891-19394011 0.00013 58_[+1]_54 chrX:17695752-17695872 0.00013 53_[+1]_59 chr3L:2885700-2885820 0.00013 24_[+1]_88 chr2L:16859777-16859897 0.00013 44_[+1]_68 chrX:6802511-6802631 0.00013 79_[+1]_33 chr2R:9094695-9094815 0.00014 98_[+1]_14 chr2R:18193256-18193376 0.00015 106_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWCAAACC width=8 seqs=47 chrX:15175215-15175335 ( 54) CACAAACC 1 chr3R:21889333-21889453 ( 18) CACAAACC 1 chr3R:30467179-30467299 ( 62) CACAAACC 1 chr2L:11172099-11172219 ( 76) CACAAACC 1 chr3L:11224775-11224895 ( 62) CACAAACC 1 chr2R:18754713-18754833 ( 64) CACAAACC 1 chrX:8721695-8721815 ( 78) CACAAACC 1 chr3L:868951-869071 ( 93) CACAAACC 1 chr3R:30121853-30121973 ( 75) CACAAACC 1 chr3L:714109-714229 ( 28) CACAAACC 1 chrX:19325893-19326013 ( 111) CTCAAACC 1 chr2L:19915352-19915472 ( 34) CTCAAACC 1 chrX:17790284-17790404 ( 48) CTCAAACC 1 chrX:123946-124066 ( 41) CTCAAACC 1 chrX:17629476-17629596 ( 82) CTCAAACC 1 chr2L:4852669-4852789 ( 65) CTCAAACC 1 chr2L:6356804-6356924 ( 3) CTCAAACC 1 chrX:12764774-12764894 ( 23) CTCAAACC 1 chr3L:10225461-10225581 ( 106) CTCAAACC 1 chr3R:16898538-16898658 ( 18) CACGAACC 1 chrX:18137962-18138082 ( 42) CACGAACC 1 chr2L:7811101-7811221 ( 3) CACGAACC 1 chr2L:15306997-15307117 ( 11) CACGAACC 1 chr2L:16848885-16849005 ( 96) CACGAACC 1 chr3R:11694864-11694984 ( 63) CACGAACC 1 chr2L:11948618-11948738 ( 62) CTCGAACC 1 chr2L:2724568-2724688 ( 25) CTCGAACC 1 chr2L:18776697-18776817 ( 85) CACAACCC 1 chr3L:15146689-15146809 ( 44) CACAACCC 1 chrX:351131-351251 ( 2) CACAACCC 1 chrX:1517219-1517339 ( 97) CACAACCC 1 chrX:19326876-19326996 ( 91) CACACACC 1 chr2L:14288012-14288132 ( 85) CACACACC 1 chr2L:19378723-19378843 ( 92) CACACACC 1 chr2L:19590743-19590863 ( 33) CTCAACCC 1 chrX:1819096-1819216 ( 37) CTCAACCC 1 chr3L:10463258-10463378 ( 78) CTCACACC 1 chr2R:2079789-2079909 ( 33) TACAAACC 1 chr3R:16351171-16351291 ( 34) CACGCACC 1 chr3R:13833639-13833759 ( 71) TTCAAACC 1 chr2L:19393891-19394011 ( 59) TTCAAACC 1 chrX:17695752-17695872 ( 54) TTCAAACC 1 chr3L:2885700-2885820 ( 25) TTCAAACC 1 chr2L:16859777-16859897 ( 45) TTCAAACC 1 chrX:6802511-6802631 ( 80) TTCAAACC 1 chr2R:9094695-9094815 ( 99) CACACCCC 1 chr2R:18193256-18193376 ( 107) CGCAAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.65489 E= 3.9e-017 -1220 213 -1220 -106 84 -1220 -314 46 -1220 236 -1220 -1220 139 -1220 3 -1220 150 -61 -1220 -1220 146 -39 -1220 -1220 -1220 236 -1220 -1220 -1220 236 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 3.9e-017 0.000000 0.851064 0.000000 0.148936 0.553191 0.000000 0.021277 0.425532 0.000000 1.000000 0.000000 0.000000 0.808511 0.000000 0.191489 0.000000 0.872340 0.127660 0.000000 0.000000 0.851064 0.148936 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWCAAACC MEME-1 regular expression -------------------------------------------------------------------------------- C[AT]CAAACC -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCA MEME-2 width = 8 sites = 21 llr = 220 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::8 pos.-specific C :::9:aa1 probability G :aa:a::: matrix T 9::::::: bits 2.4 * * * 2.2 ** *** 1.9 ****** 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (15.1 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12066800-12066920 25 4.63e-06 ATATCGTATG TGGCGCCA TTAAAGTGTG chr2L:18776697-18776817 16 4.63e-06 AAATATCTGC TGGCGCCA TCTGTTGGCC chrX:18621973-18622093 4 4.63e-06 CAC TGGCGCCA TCTGTATGTT chrX:12035352-12035472 95 4.63e-06 GAACAACAGA TGGCGCCA GCTGAAGAAG chr3L:9751792-9751912 28 4.63e-06 TGGCTTACTA TGGCGCCA CCTAGCGGCT chr2R:22297874-22297994 90 4.63e-06 CATACCTATG TGGCGCCA TCTACACTTC chr3L:21953152-21953272 93 4.63e-06 GGCCAACAGA TGGCGCCA CCGGTTACAA chr3L:15048271-15048391 74 4.63e-06 ATTGAAATAG TGGCGCCA CTGTATTATA chr3L:10427478-10427598 6 4.63e-06 CACAT TGGCGCCA TCTGGAGGAT chr3L:4805935-4806055 51 4.63e-06 TGCTCGTAGA TGGCGCCA CATAATGGTT chr3L:22940377-22940497 81 7.56e-06 AAAATCCATC TGGCGCCC ATATTATGTA chrX:17629476-17629596 92 7.56e-06 CTCAAACCAT TGGCGCCC AGAATTACAA chr3L:9054920-9055040 70 7.56e-06 CACTAGCTTT TGGCGCCC TCTAGCAAAT chr3L:868951-869071 10 1.04e-05 TGTCCCCAG TGGCGCCG CCTTTCGGGG chrX:18704027-18704147 68 1.33e-05 GACCGCCAGG CGGCGCCA GGGCTGGGAT chr2R:7940567-7940687 14 2.53e-05 AGTCGCTAGG TGGAGCCA CTTATATACT chr3L:12732876-12732996 39 2.53e-05 GATTTAAAAT TGGCGCCT TACTTTTAGC chr2R:8992384-8992504 109 2.53e-05 CTGAAATAGG TGGAGCCA AAGA chr3R:15493364-15493484 49 3.43e-05 CGTGGCACAG TGGCGGCA CCTAACGTTC chr3L:22958327-22958447 64 3.43e-05 TTTTGACTGG AGGCGCCA CCGTAGGTTA chrX:19325893-19326013 28 4.19e-05 AGGTTTAACC TAGCGCCA CCTGTGTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12066800-12066920 4.6e-06 24_[+2]_88 chr2L:18776697-18776817 4.6e-06 15_[+2]_97 chrX:18621973-18622093 4.6e-06 3_[+2]_109 chrX:12035352-12035472 4.6e-06 94_[+2]_18 chr3L:9751792-9751912 4.6e-06 27_[+2]_85 chr2R:22297874-22297994 4.6e-06 89_[+2]_23 chr3L:21953152-21953272 4.6e-06 92_[+2]_20 chr3L:15048271-15048391 4.6e-06 73_[+2]_39 chr3L:10427478-10427598 4.6e-06 5_[+2]_107 chr3L:4805935-4806055 4.6e-06 50_[+2]_62 chr3L:22940377-22940497 7.6e-06 80_[+2]_32 chrX:17629476-17629596 7.6e-06 91_[+2]_21 chr3L:9054920-9055040 7.6e-06 69_[+2]_43 chr3L:868951-869071 1e-05 9_[+2]_103 chrX:18704027-18704147 1.3e-05 67_[+2]_45 chr2R:7940567-7940687 2.5e-05 13_[+2]_99 chr3L:12732876-12732996 2.5e-05 38_[+2]_74 chr2R:8992384-8992504 2.5e-05 108_[+2]_4 chr3R:15493364-15493484 3.4e-05 48_[+2]_64 chr3L:22958327-22958447 3.4e-05 63_[+2]_49 chrX:19325893-19326013 4.2e-05 27_[+2]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCA width=8 seqs=21 chr3L:12066800-12066920 ( 25) TGGCGCCA 1 chr2L:18776697-18776817 ( 16) TGGCGCCA 1 chrX:18621973-18622093 ( 4) TGGCGCCA 1 chrX:12035352-12035472 ( 95) TGGCGCCA 1 chr3L:9751792-9751912 ( 28) TGGCGCCA 1 chr2R:22297874-22297994 ( 90) TGGCGCCA 1 chr3L:21953152-21953272 ( 93) TGGCGCCA 1 chr3L:15048271-15048391 ( 74) TGGCGCCA 1 chr3L:10427478-10427598 ( 6) TGGCGCCA 1 chr3L:4805935-4806055 ( 51) TGGCGCCA 1 chr3L:22940377-22940497 ( 81) TGGCGCCC 1 chrX:17629476-17629596 ( 92) TGGCGCCC 1 chr3L:9054920-9055040 ( 70) TGGCGCCC 1 chr3L:868951-869071 ( 10) TGGCGCCG 1 chrX:18704027-18704147 ( 68) CGGCGCCA 1 chr2R:7940567-7940687 ( 14) TGGAGCCA 1 chr3L:12732876-12732996 ( 39) TGGCGCCT 1 chr2R:8992384-8992504 ( 109) TGGAGCCA 1 chr3R:15493364-15493484 ( 49) TGGCGGCA 1 chr3L:22958327-22958447 ( 64) AGGCGCCA 1 chrX:19325893-19326013 ( 28) TAGCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 1.3e-008 -269 -203 -1104 155 -269 -1104 235 -1104 -1104 -1104 242 -1104 -169 222 -1104 -1104 -1104 -1104 242 -1104 -1104 229 -197 -1104 -1104 236 -1104 -1104 130 -45 -197 -270 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.3e-008 0.047619 0.047619 0.000000 0.904762 0.047619 0.000000 0.952381 0.000000 0.000000 0.000000 1.000000 0.000000 0.095238 0.904762 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 1.000000 0.000000 0.000000 0.761905 0.142857 0.047619 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCA MEME-2 regular expression -------------------------------------------------------------------------------- TGGCGCCA -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTYGTG MEME-3 width = 8 sites = 44 llr = 385 E-value = 4.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C ::::321: probability G aa:2281a matrix T ::a85:6: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 *** * * Relative 1.4 *** * * Entropy 1.2 **** * * (12.6 bits) 1.0 **** * * 0.7 **** * * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel GGTTTGTG consensus C A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11347943-11348063 80 1.13e-05 GAATTACAAG GGTTTGTG TCCTAGCTAT chr3R:15913281-15913401 96 1.13e-05 TGCTGTGCGT GGTTTGTG TACGAGCTTT chr2L:17715985-17716105 80 1.13e-05 GTTACGTTTT GGTTTGTG TACTGAGTTT chr3L:16741789-16741909 53 1.13e-05 CGGTTAAAAC GGTTTGTG TATTGGATAA chr3L:22616937-22617057 64 1.13e-05 GCCTGCGGTG GGTTTGTG TCTATGCTGT chr2R:11435670-11435790 105 1.13e-05 ATTTTTGCAT GGTTTGTG TCTTGGCT chr2L:21397357-21397477 38 1.84e-05 agccctggct ggttcgtg tccacggtac chr2L:2195488-2195608 2 1.84e-05 G GGTTCGTG TCCTAACTTA chr2R:2079789-2079909 6 1.84e-05 tggct ggttcgtg tccacggtac chr3L:15516098-15516218 33 1.84e-05 ACTGTAAAAA GGTTCGTG AACTAGCTAA chr3L:18460452-18460572 82 2.52e-05 TGCTGATAGT GGTTGGTG TATTGGATAa chrX:8838003-8838123 17 2.52e-05 TTTGAGTACC GGTTGGTG TCTTAGCTAA chr2R:6810468-6810588 68 3.64e-05 AATACCGAGT GGTTTGAG GGATCGCTAA chrX:2524605-2524725 60 3.64e-05 TGACTGCTAA GGTTTGAG AGCAATTGTG chr2L:1118265-1118385 62 3.64e-05 GCTGCAGTTC GGTTTGAG TCTCGGTTGG chrX:18018627-18018747 42 3.64e-05 TTTCGTTTTT GGTTTGAG TACCTGCTTT chrX:8148700-8148820 84 3.64e-05 AATCAGTGCT GGTTTGAG TCTGCACTAA chr3L:6619198-6619318 63 3.64e-05 CTCACTACAG GGTTTGAG TCACAATAAG chr3L:332613-332733 77 5.03e-05 TCTACATGTA GGTGTGTG ACCTGGCTTG chrX:18321489-18321609 52 5.03e-05 ACTGTGACAG GGTGTGTG CCTGCGCTAC chr3L:17669640-17669760 60 5.03e-05 CCGTGCAATC GGTTCGAG TCCTCACTTT chrX:21605686-21605806 24 5.03e-05 tcagctaaat ggtgtgtg agcgaGATGA chr2L:4852669-4852789 23 5.03e-05 TCTGTCGAAA GGTTCGAG TCACCGCTAG chr2L:22179739-22179859 91 5.03e-05 GGTTCTGCCA GGTTCGAG TCTCCGATAA chr3L:15264247-15264367 64 5.03e-05 TGTGCCAAGG GGTGTGTG TCTTGGCTAA chr2L:5624182-5624302 11 5.03e-05 AACTCTACGC GGTTCGAG TTCGAAAAAG chr3R:15493364-15493484 94 5.46e-05 AATAGTTCAT GGTGCGTG TCAAAAAGGA chrX:18805127-18805247 70 7.53e-05 TTTGCATGAG GGTTTGCG GCGCGGCTAA chr3R:5326318-5326438 49 7.53e-05 CGAAAAACCA GGTTTGGG TCCCGGCTAA chr3L:4805935-4806055 65 7.53e-05 GCCACATAAT GGTTTGGG AATTTGCTTA chr3L:16930619-16930739 17 8.81e-05 GATCCCCAGT GGTTCGGG TCTTCACTGC chr3R:12650669-12650789 43 8.81e-05 cattacatGG GGTGGGTG TACTGGCTAC chrX:11434090-11434210 43 8.81e-05 TCCATATAAA GGTTCGCG TACAAGCTCA chr2L:576897-577017 61 9.99e-05 GACCAGGGTG GGTTTCTG GATTTTTGGT chr2R:13043702-13043822 88 9.99e-05 GGTAGTTTTT GGTTTCTG AAAGCGATAA chr2L:35605-35725 52 9.99e-05 AGGAGCACTT GGTTTCTG TATTCACTAA chr3R:16351171-16351291 12 1.15e-04 TCCTCGGACA GGTTGGCG TATTCACTAT chrX:15840194-15840314 96 1.15e-04 GACTGGAACC GGTTGGCG ATCGAACAGA chr2R:6017012-6017132 62 1.27e-04 TAATTTGCTT GGTGCGAG TGCTGGAGCT chr3L:12066800-12066920 74 1.34e-04 TACGACCATT GGTTGCTG ACCTGGCTAA chrX:6728865-6728985 41 1.34e-04 AAGGTCAAAT GGTTGCTG CCTTCGCTAA chr3R:30527456-30527576 26 1.34e-04 GATGGCTGTT GGTTGCTG TCCTCACAAA chr3L:10427478-10427598 61 1.34e-04 TTAACTTTAT GGTTGCTG TCTCTGCTAA chrX:3726136-3726256 79 1.46e-04 AAAGGAGAGA GGTGTGGG GATGGGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11347943-11348063 1.1e-05 79_[+3]_33 chr3R:15913281-15913401 1.1e-05 95_[+3]_17 chr2L:17715985-17716105 1.1e-05 79_[+3]_33 chr3L:16741789-16741909 1.1e-05 52_[+3]_60 chr3L:22616937-22617057 1.1e-05 63_[+3]_49 chr2R:11435670-11435790 1.1e-05 104_[+3]_8 chr2L:21397357-21397477 1.8e-05 37_[+3]_75 chr2L:2195488-2195608 1.8e-05 1_[+3]_111 chr2R:2079789-2079909 1.8e-05 5_[+3]_107 chr3L:15516098-15516218 1.8e-05 32_[+3]_80 chr3L:18460452-18460572 2.5e-05 81_[+3]_31 chrX:8838003-8838123 2.5e-05 16_[+3]_96 chr2R:6810468-6810588 3.6e-05 67_[+3]_45 chrX:2524605-2524725 3.6e-05 59_[+3]_53 chr2L:1118265-1118385 3.6e-05 61_[+3]_51 chrX:18018627-18018747 3.6e-05 41_[+3]_71 chrX:8148700-8148820 3.6e-05 83_[+3]_29 chr3L:6619198-6619318 3.6e-05 62_[+3]_50 chr3L:332613-332733 5e-05 76_[+3]_36 chrX:18321489-18321609 5e-05 51_[+3]_61 chr3L:17669640-17669760 5e-05 59_[+3]_53 chrX:21605686-21605806 5e-05 23_[+3]_89 chr2L:4852669-4852789 5e-05 22_[+3]_90 chr2L:22179739-22179859 5e-05 90_[+3]_22 chr3L:15264247-15264367 5e-05 63_[+3]_49 chr2L:5624182-5624302 5e-05 10_[+3]_102 chr3R:15493364-15493484 5.5e-05 93_[+3]_19 chrX:18805127-18805247 7.5e-05 69_[+3]_43 chr3R:5326318-5326438 7.5e-05 48_[+3]_64 chr3L:4805935-4806055 7.5e-05 64_[+3]_48 chr3L:16930619-16930739 8.8e-05 16_[+3]_96 chr3R:12650669-12650789 8.8e-05 42_[+3]_70 chrX:11434090-11434210 8.8e-05 42_[+3]_70 chr2L:576897-577017 0.0001 60_[+3]_52 chr2R:13043702-13043822 0.0001 87_[+3]_25 chr2L:35605-35725 0.0001 51_[+3]_61 chr3R:16351171-16351291 0.00012 11_[+3]_101 chrX:15840194-15840314 0.00012 95_[+3]_17 chr2R:6017012-6017132 0.00013 61_[+3]_51 chr3L:12066800-12066920 0.00013 73_[+3]_39 chrX:6728865-6728985 0.00013 40_[+3]_72 chr3R:30527456-30527576 0.00013 25_[+3]_87 chr3L:10427478-10427598 0.00013 60_[+3]_52 chrX:3726136-3726256 0.00015 78_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTYGTG width=8 seqs=44 chrX:11347943-11348063 ( 80) GGTTTGTG 1 chr3R:15913281-15913401 ( 96) GGTTTGTG 1 chr2L:17715985-17716105 ( 80) GGTTTGTG 1 chr3L:16741789-16741909 ( 53) GGTTTGTG 1 chr3L:22616937-22617057 ( 64) GGTTTGTG 1 chr2R:11435670-11435790 ( 105) GGTTTGTG 1 chr2L:21397357-21397477 ( 38) GGTTCGTG 1 chr2L:2195488-2195608 ( 2) GGTTCGTG 1 chr2R:2079789-2079909 ( 6) GGTTCGTG 1 chr3L:15516098-15516218 ( 33) GGTTCGTG 1 chr3L:18460452-18460572 ( 82) GGTTGGTG 1 chrX:8838003-8838123 ( 17) GGTTGGTG 1 chr2R:6810468-6810588 ( 68) GGTTTGAG 1 chrX:2524605-2524725 ( 60) GGTTTGAG 1 chr2L:1118265-1118385 ( 62) GGTTTGAG 1 chrX:18018627-18018747 ( 42) GGTTTGAG 1 chrX:8148700-8148820 ( 84) GGTTTGAG 1 chr3L:6619198-6619318 ( 63) GGTTTGAG 1 chr3L:332613-332733 ( 77) GGTGTGTG 1 chrX:18321489-18321609 ( 52) GGTGTGTG 1 chr3L:17669640-17669760 ( 60) GGTTCGAG 1 chrX:21605686-21605806 ( 24) GGTGTGTG 1 chr2L:4852669-4852789 ( 23) GGTTCGAG 1 chr2L:22179739-22179859 ( 91) GGTTCGAG 1 chr3L:15264247-15264367 ( 64) GGTGTGTG 1 chr2L:5624182-5624302 ( 11) GGTTCGAG 1 chr3R:15493364-15493484 ( 94) GGTGCGTG 1 chrX:18805127-18805247 ( 70) GGTTTGCG 1 chr3R:5326318-5326438 ( 49) GGTTTGGG 1 chr3L:4805935-4806055 ( 65) GGTTTGGG 1 chr3L:16930619-16930739 ( 17) GGTTCGGG 1 chr3R:12650669-12650789 ( 43) GGTGGGTG 1 chrX:11434090-11434210 ( 43) GGTTCGCG 1 chr2L:576897-577017 ( 61) GGTTTCTG 1 chr2R:13043702-13043822 ( 88) GGTTTCTG 1 chr2L:35605-35725 ( 52) GGTTTCTG 1 chr3R:16351171-16351291 ( 12) GGTTGGCG 1 chrX:15840194-15840314 ( 96) GGTTGGCG 1 chr2R:6017012-6017132 ( 62) GGTGCGAG 1 chr3L:12066800-12066920 ( 74) GGTTGCTG 1 chrX:6728865-6728985 ( 41) GGTTGCTG 1 chr3R:30527456-30527576 ( 26) GGTTGCTG 1 chr3L:10427478-10427598 ( 61) GGTTGCTG 1 chrX:3726136-3726256 ( 79) GGTGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 4.1e-011 -1210 -1210 242 -1210 -1210 -1210 242 -1210 -1210 -1210 -1210 169 -1210 -1210 -4 140 -1210 49 13 76 -1210 -29 217 -1210 -30 -110 -104 88 -1210 -1210 242 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.1e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.272727 0.204545 0.522727 0.000000 0.159091 0.840909 0.000000 0.250000 0.090909 0.090909 0.568182 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTYGTG MEME-3 regular expression -------------------------------------------------------------------------------- GGTT[TCG]G[TA]G -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGTGCD MEME-4 width = 8 sites = 19 llr = 183 E-value = 3.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::6::::2 pos.-specific C :a2:1:a1 probability G a::a:a:4 matrix T ::2:9::3 bits 2.4 ** * ** 2.2 ** * ** 1.9 ** * ** 1.7 ** * ** Relative 1.4 ** * ** Entropy 1.2 ** **** (13.9 bits) 1.0 ** **** 0.7 ** **** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GCAGTGCG consensus C T sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2195488-2195608 44 4.44e-06 CTGGCGTTTT GCAGTGCG GGTGATATCT chr3R:16898538-16898658 92 7.25e-06 TTGTTGTTGA GCCGTGCG ATTGCCCCAA chr3L:18460452-18460572 68 1.91e-05 TGAACAACAA GCAGTGCT GATAGTGGTT chr3R:6709799-6709919 7 1.91e-05 ggtggt gctgtgcg tggtggtggt chr3L:4840265-4840385 101 1.91e-05 TTGGCTTCCG GCTGTGCG TTGTGTCCGT chr3R:15913281-15913401 87 1.91e-05 TCATGCTCTT GCTGTGCG TGGTTTGTGT chrX:8210754-8210874 74 1.91e-05 CTTTCCGGTA GCAGTGCT TGTCAAACTG chrX:20792210-20792330 94 1.91e-05 TGGGAAATGG GCAGTGCT TTTAAGCTTT chr3L:22616937-22617057 77 1.91e-05 TTGTGTCTAT GCTGTGCG CTGCAACGGA chr3L:2228749-2228869 57 2.64e-05 GCATGCGAAA GCAGTGCA AGCAAGTGGT chr2R:6037745-6037865 106 2.64e-05 ATTATATAGA GCAGTGCA TGCTGGA chr3L:2885700-2885820 45 2.64e-05 GCACGTTCAA GCAGTGCA CAATACGATT chr3L:15268142-15268262 33 3.10e-05 TTAGAATTCG GCAGTGCC TTTTTCGGTA chr2L:16333955-16334075 80 3.10e-05 TGAATTAAGT GCAGTGCC ATTTTCCCTT chr3L:22470394-22470514 50 3.57e-05 TAGCTTTCAA GCCGTGCT CCGAACCCTT chr3L:4805935-4806055 37 3.57e-05 TAGTTTTTGA GCCGTGCT CGTAGATGGC chr2L:19915352-19915472 80 3.85e-05 AATCAGGGTG GCAGCGCG TGATATGTTT chrX:12764774-12764894 46 3.85e-05 CCAGCTCCAT GCAGCGCG GACGCACACA chr3L:17669640-17669760 49 4.31e-05 GATGTTAATC GCCGTGCA ATCGGTTCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2195488-2195608 4.4e-06 43_[+4]_69 chr3R:16898538-16898658 7.3e-06 91_[+4]_21 chr3L:18460452-18460572 1.9e-05 67_[+4]_45 chr3R:6709799-6709919 1.9e-05 6_[+4]_106 chr3L:4840265-4840385 1.9e-05 100_[+4]_12 chr3R:15913281-15913401 1.9e-05 86_[+4]_26 chrX:8210754-8210874 1.9e-05 73_[+4]_39 chrX:20792210-20792330 1.9e-05 93_[+4]_19 chr3L:22616937-22617057 1.9e-05 76_[+4]_36 chr3L:2228749-2228869 2.6e-05 56_[+4]_56 chr2R:6037745-6037865 2.6e-05 105_[+4]_7 chr3L:2885700-2885820 2.6e-05 44_[+4]_68 chr3L:15268142-15268262 3.1e-05 32_[+4]_80 chr2L:16333955-16334075 3.1e-05 79_[+4]_33 chr3L:22470394-22470514 3.6e-05 49_[+4]_63 chr3L:4805935-4806055 3.6e-05 36_[+4]_76 chr2L:19915352-19915472 3.8e-05 79_[+4]_33 chrX:12764774-12764894 3.8e-05 45_[+4]_67 chr3L:17669640-17669760 4.3e-05 48_[+4]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGTGCD width=8 seqs=19 chr2L:2195488-2195608 ( 44) GCAGTGCG 1 chr3R:16898538-16898658 ( 92) GCCGTGCG 1 chr3L:18460452-18460572 ( 68) GCAGTGCT 1 chr3R:6709799-6709919 ( 7) GCTGTGCG 1 chr3L:4840265-4840385 ( 101) GCTGTGCG 1 chr3R:15913281-15913401 ( 87) GCTGTGCG 1 chrX:8210754-8210874 ( 74) GCAGTGCT 1 chrX:20792210-20792330 ( 94) GCAGTGCT 1 chr3L:22616937-22617057 ( 77) GCTGTGCG 1 chr3L:2228749-2228869 ( 57) GCAGTGCA 1 chr2R:6037745-6037865 ( 106) GCAGTGCA 1 chr3L:2885700-2885820 ( 45) GCAGTGCA 1 chr3L:15268142-15268262 ( 33) GCAGTGCC 1 chr2L:16333955-16334075 ( 80) GCAGTGCC 1 chr3L:22470394-22470514 ( 50) GCCGTGCT 1 chr3L:4805935-4806055 ( 37) GCCGTGCT 1 chr2L:19915352-19915472 ( 80) GCAGCGCG 1 chrX:12764774-12764894 ( 46) GCAGCGCG 1 chr3L:17669640-17669760 ( 49) GCCGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 3.9e+001 -1089 -1089 242 -1089 -1089 236 -1089 -1089 91 11 -1089 -56 -1089 -1089 242 -1089 -1089 -89 -1089 153 -1089 -1089 242 -1089 -1089 236 -1089 -1089 -55 -89 117 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 3.9e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578947 0.210526 0.000000 0.210526 0.000000 0.000000 1.000000 0.000000 0.000000 0.105263 0.000000 0.894737 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.210526 0.105263 0.421053 0.263158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCD MEME-4 regular expression -------------------------------------------------------------------------------- GC[ACT]GTGC[GTA] -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCTTTT MEME-5 width = 8 sites = 30 llr = 266 E-value = 5.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9a2::::: pos.-specific C 1::a:::1 probability G ::8::1:: matrix T ::::a9a9 bits 2.4 * 2.2 * 1.9 * 1.7 **** * Relative 1.4 ****** Entropy 1.2 ******** (12.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGCTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16223878-16223998 49 3.19e-05 TCCTTTGGTT AAGCTTTT AGCACAACTT chr3L:5343438-5343558 11 3.19e-05 GCTCTCGGCA AAGCTTTT GGCTTAAATA chr2R:18553836-18553956 19 3.19e-05 ATTAAAAACA AAGCTTTT CAACCATTTT chrX:18018627-18018747 108 3.19e-05 AAGGAACCCG AAGCTTTT GCAAG chrX:12035352-12035472 28 3.19e-05 TTTTTGTTGA AAGCTTTT GAAGTTTGTC chr2L:8326980-8327100 67 3.19e-05 AACCGACTAA AAGCTTTT CTAACAAAAT chr3R:20464475-20464595 48 3.19e-05 AACAAGCTTG AAGCTTTT TACTTTACTA chr2L:20851722-20851842 9 3.19e-05 GGGAGGAA AAGCTTTT TGTGGCTGAC chr3R:30527456-30527576 70 3.19e-05 GCCTATTGAA AAGCTTTT CAAATAGAGC chr2R:22596448-22596568 102 3.19e-05 CCATGCTTTC AAGCTTTT GTGTAAAATA chrX:351131-351251 63 3.19e-05 ATAGGTCTAA AAGCTTTT AGATCAAACT chr2R:17927187-17927307 107 3.19e-05 TGACCTACAA AAGCTTTT ATTCAG chrX:20792210-20792330 105 3.19e-05 CAGTGCTTTT AAGCTTTT AACACAGT chrX:1560185-1560305 103 3.19e-05 CCCTCTGCAA AAGCTTTT GCCCTCTACA chr2L:5624182-5624302 58 3.19e-05 CGATGACGAA AAGCTTTT GGTGGTTGTT chr3L:14513355-14513475 75 3.19e-05 ATCTTAGCTA AAGCTTTT CATAAAATTC chr3L:16930619-16930739 90 5.20e-05 GTCATCAGCT AAGCTTTC GGGTCGGCCA chr2R:6089081-6089201 7 5.20e-05 TTTAAA AAGCTTTC TCTTTTTGTC chr2L:9657460-9657580 84 5.20e-05 TGTAGACTTC AAGCTTTC GAAATTTGTT chr2L:12133555-12133675 93 1.05e-04 ATATGTTTTG AAACTTTT TTATAGAACG chr2L:576897-577017 95 1.05e-04 AACGGCTCCG AAACTTTT TCCATAGCAT chr2L:16852721-16852841 25 1.05e-04 TATAAATTGC AAACTTTT TAGCGAAGCT chr2R:22297874-22297994 37 1.05e-04 TAAGCAACAT AAACTTTT AAGCTCCAAA chrX:1187098-1187218 67 1.05e-04 TAGTTTCTTT AAACTTTT CTGGGCATAA chrX:11520408-11520528 30 1.44e-04 acacTTGCGG AAGCTGTT GCTGCGATGA chr2R:8665388-8665508 51 1.44e-04 AGTCTCGGGT AAGCTGTT CTACACGGTG chr2R:9094695-9094815 3 1.44e-04 GT CAGCTTTT GAGTTTttac chrX:3285423-3285543 98 1.44e-04 ACTTTTCTCA CAGCTTTT CACCACACTT chr2R:2079789-2079909 96 1.83e-04 ctagaacttt aagctttg agctggttcg chr3L:6103794-6103914 37 1.83e-04 AGTGTCCTTT GAGCTTTT GACAGCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16223878-16223998 3.2e-05 48_[+5]_64 chr3L:5343438-5343558 3.2e-05 10_[+5]_102 chr2R:18553836-18553956 3.2e-05 18_[+5]_94 chrX:18018627-18018747 3.2e-05 107_[+5]_5 chrX:12035352-12035472 3.2e-05 27_[+5]_85 chr2L:8326980-8327100 3.2e-05 66_[+5]_46 chr3R:20464475-20464595 3.2e-05 47_[+5]_65 chr2L:20851722-20851842 3.2e-05 8_[+5]_104 chr3R:30527456-30527576 3.2e-05 69_[+5]_43 chr2R:22596448-22596568 3.2e-05 101_[+5]_11 chrX:351131-351251 3.2e-05 62_[+5]_50 chr2R:17927187-17927307 3.2e-05 106_[+5]_6 chrX:20792210-20792330 3.2e-05 104_[+5]_8 chrX:1560185-1560305 3.2e-05 102_[+5]_10 chr2L:5624182-5624302 3.2e-05 57_[+5]_55 chr3L:14513355-14513475 3.2e-05 74_[+5]_38 chr3L:16930619-16930739 5.2e-05 89_[+5]_23 chr2R:6089081-6089201 5.2e-05 6_[+5]_106 chr2L:9657460-9657580 5.2e-05 83_[+5]_29 chr2L:12133555-12133675 0.0001 92_[+5]_20 chr2L:576897-577017 0.0001 94_[+5]_18 chr2L:16852721-16852841 0.0001 24_[+5]_88 chr2R:22297874-22297994 0.0001 36_[+5]_76 chrX:1187098-1187218 0.0001 66_[+5]_46 chrX:11520408-11520528 0.00014 29_[+5]_83 chr2R:8665388-8665508 0.00014 50_[+5]_62 chr2R:9094695-9094815 0.00014 2_[+5]_110 chrX:3285423-3285543 0.00014 97_[+5]_15 chr2R:2079789-2079909 0.00018 95_[+5]_17 chr3L:6103794-6103914 0.00018 36_[+5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCTTTT width=8 seqs=30 chr2L:16223878-16223998 ( 49) AAGCTTTT 1 chr3L:5343438-5343558 ( 11) AAGCTTTT 1 chr2R:18553836-18553956 ( 19) AAGCTTTT 1 chrX:18018627-18018747 ( 108) AAGCTTTT 1 chrX:12035352-12035472 ( 28) AAGCTTTT 1 chr2L:8326980-8327100 ( 67) AAGCTTTT 1 chr3R:20464475-20464595 ( 48) AAGCTTTT 1 chr2L:20851722-20851842 ( 9) AAGCTTTT 1 chr3R:30527456-30527576 ( 70) AAGCTTTT 1 chr2R:22596448-22596568 ( 102) AAGCTTTT 1 chrX:351131-351251 ( 63) AAGCTTTT 1 chr2R:17927187-17927307 ( 107) AAGCTTTT 1 chrX:20792210-20792330 ( 105) AAGCTTTT 1 chrX:1560185-1560305 ( 103) AAGCTTTT 1 chr2L:5624182-5624302 ( 58) AAGCTTTT 1 chr3L:14513355-14513475 ( 75) AAGCTTTT 1 chr3L:16930619-16930739 ( 90) AAGCTTTC 1 chr2R:6089081-6089201 ( 7) AAGCTTTC 1 chr2L:9657460-9657580 ( 84) AAGCTTTC 1 chr2L:12133555-12133675 ( 93) AAACTTTT 1 chr2L:576897-577017 ( 95) AAACTTTT 1 chr2L:16852721-16852841 ( 25) AAACTTTT 1 chr2R:22297874-22297994 ( 37) AAACTTTT 1 chrX:1187098-1187218 ( 67) AAACTTTT 1 chrX:11520408-11520528 ( 30) AAGCTGTT 1 chr2R:8665388-8665508 ( 51) AAGCTGTT 1 chr2R:9094695-9094815 ( 3) CAGCTTTT 1 chrX:3285423-3285543 ( 98) CAGCTTTT 1 chr2R:2079789-2079909 ( 96) AAGCTTTG 1 chr3L:6103794-6103914 ( 37) GAGCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 5.7e+001 154 -154 -249 -1155 170 -1155 -1155 -1155 -89 -1155 215 -1155 -1155 236 -1155 -1155 -1155 -1155 -1155 169 -1155 -1155 -149 159 -1155 -1155 -1155 169 -1155 -96 -249 148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.7e+001 0.900000 0.066667 0.033333 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.033333 0.866667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCTTTT MEME-5 regular expression -------------------------------------------------------------------------------- AAGCTTTT -------------------------------------------------------------------------------- Time 32.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12547089-12547209 7.58e-01 120 chr3L:6995079-6995199 2.28e-01 120 chr2R:11435670-11435790 3.25e-02 17_[+3(8.81e-05)]_79_[+3(1.13e-05)]_\ 8 chrX:337021-337141 1.76e-01 120 chr3L:6103794-6103914 9.12e-02 120 chr3L:10320943-10321063 2.04e-01 6_[+4(9.45e-05)]_106 chrX:8838003-8838123 8.96e-02 16_[+3(2.52e-05)]_96 chr3L:4805935-4806055 3.14e-05 36_[+4(3.57e-05)]_6_[+2(4.63e-06)]_\ 6_[+3(7.53e-05)]_48 chrX:8407794-8407914 3.91e-01 120 chr3L:22616937-22617057 1.16e-04 63_[+3(1.13e-05)]_5_[+4(1.91e-05)]_\ 36 chr3L:14513355-14513475 5.80e-02 74_[+5(3.19e-05)]_38 chr2L:2724568-2724688 1.66e-01 24_[+1(4.20e-05)]_88 chrX:16753249-16753369 1.50e-01 120 chr2L:5624182-5624302 3.15e-03 10_[+3(5.03e-05)]_39_[+5(3.19e-05)]_\ 55 chr3L:15516098-15516218 1.58e-01 32_[+3(1.84e-05)]_80 chr3L:10427478-10427598 7.22e-04 5_[+2(4.63e-06)]_107 chr3L:15048271-15048391 4.48e-03 73_[+2(4.63e-06)]_39 chr2L:16333955-16334075 6.55e-02 79_[+4(3.10e-05)]_33 chr3R:11694864-11694984 1.40e-02 62_[+1(3.40e-05)]_50 chr3R:5200788-5200908 2.16e-01 120 chr3L:10225461-10225581 2.53e-02 105_[+1(2.61e-05)]_7 chr3L:21953152-21953272 6.54e-03 92_[+2(4.63e-06)]_20 chr3L:16741789-16741909 1.08e-01 52_[+3(1.13e-05)]_60 chr3L:714109-714229 6.93e-04 27_[+1(1.30e-05)]_85 chrX:3841544-3841664 6.96e-01 120 chrX:4363463-4363583 9.79e-01 120 chrX:1560185-1560305 5.28e-03 102_[+5(3.19e-05)]_10 chrX:1187098-1187218 5.47e-02 120 chr2L:16848885-16849005 8.17e-02 95_[+1(3.40e-05)]_17 chr2R:18193256-18193376 2.08e-01 120 chr3R:5326318-5326438 8.67e-02 48_[+3(7.53e-05)]_64 chr3L:5083408-5083528 3.91e-01 120 chrX:17884664-17884784 2.29e-01 67_[+2(7.82e-05)]_45 chrX:20792210-20792330 2.20e-03 93_[+4(1.91e-05)]_3_[+5(3.19e-05)]_\ 8 chr3L:6619198-6619318 1.17e-02 62_[+3(3.64e-05)]_50 chrX:3252780-3252900 7.57e-03 46_[+5(5.20e-05)]_66 chr3L:15264247-15264367 1.52e-02 63_[+3(5.03e-05)]_49 chr3R:30121853-30121973 6.81e-03 74_[+1(1.30e-05)]_38 chr3R:32006520-32006640 4.97e-01 120 chr3R:27547501-27547621 5.60e-01 120 chr2R:21972736-21972856 9.19e-01 120 chr3R:16620074-16620194 3.28e-01 120 chr2R:11407981-11408101 9.96e-01 120 chrX:6802511-6802631 1.42e-01 120 chr3R:23522440-23522560 2.41e-01 120 chrX:3285423-3285543 1.95e-02 120 chr2R:17927187-17927307 1.81e-01 106_[+5(3.19e-05)]_6 chrX:14874773-14874893 4.96e-01 120 chr3L:6995498-6995618 3.58e-01 120 chr2L:9657460-9657580 3.03e-01 83_[+5(5.20e-05)]_29 chr2R:25038623-25038743 1.42e-01 120 chr3L:868951-869071 6.95e-04 9_[+2(1.04e-05)]_75_[+1(1.30e-05)]_\ 20 chr2L:20835646-20835766 6.57e-01 120 chr2R:25039009-25039129 1.49e-01 120 chr3L:22958327-22958447 1.54e-01 63_[+2(3.43e-05)]_49 chrX:16063053-16063173 2.94e-01 120 chrX:12764774-12764894 3.21e-03 22_[+1(2.61e-05)]_15_[+4(3.85e-05)]_\ 4_[+1(5.84e-05)]_55 chrX:1821171-1821291 1.60e-01 120 chrX:1517219-1517339 6.78e-03 96_[+1(5.02e-05)]_16 chr2R:6017012-6017132 1.66e-02 120 chr3L:9054920-9055040 1.96e-02 69_[+2(7.56e-06)]_43 chr3L:10246528-10246648 2.63e-01 120 chr3R:20059082-20059202 9.33e-01 120 chrX:8721695-8721815 1.24e-02 77_[+1(1.30e-05)]_35 chr2L:22179739-22179859 1.48e-01 90_[+3(5.03e-05)]_22 chrX:8148700-8148820 3.87e-02 83_[+3(3.64e-05)]_29 chrX:15840194-15840314 6.13e-02 120 chrX:945865-945985 4.04e-01 120 chrX:1010038-1010158 5.78e-01 120 chr3L:14445871-14445991 1.30e-01 120 chrX:9040998-9041118 3.47e-01 120 chrX:16063264-16063384 9.82e-01 120 chr2L:35605-35725 2.28e-02 51_[+3(9.99e-05)]_61 chr3L:6995285-6995405 4.51e-01 120 chr2R:2079789-2079909 6.95e-04 5_[+3(1.84e-05)]_19_[+1(9.57e-05)]_\ 67_[+3(5.03e-05)]_5 chr3L:11041382-11041502 8.64e-01 120 chr2L:14972967-14973087 4.76e-01 120 chr2L:17715985-17716105 5.49e-02 79_[+3(1.13e-05)]_33 chr2R:13043702-13043822 2.02e-01 87_[+3(9.99e-05)]_25 chr3R:30870624-30870744 5.45e-01 120 chr2R:22297874-22297994 7.88e-04 89_[+2(4.63e-06)]_23 chr2R:11408306-11408426 5.14e-02 120 chrX:351131-351251 3.62e-03 1_[+1(5.02e-05)]_53_[+5(3.19e-05)]_\ 50 chr2L:21251324-21251444 5.43e-01 120 chrX:1286259-1286379 1.66e-01 120 chr2R:22596448-22596568 1.50e-01 101_[+5(3.19e-05)]_11 chr2R:6089081-6089201 8.57e-02 6_[+5(5.20e-05)]_106 chrX:8721896-8722016 8.30e-01 120 chr3L:14446072-14446192 8.10e-01 120 chr2L:6356804-6356924 1.84e-01 2_[+1(2.61e-05)]_110 chrX:1819096-1819216 6.34e-02 36_[+1(6.67e-05)]_76 chr2L:14094425-14094545 5.05e-01 120 chr2L:4852669-4852789 3.92e-03 22_[+3(5.03e-05)]_34_[+1(2.61e-05)]_\ 48 chrX:17629476-17629596 6.97e-04 81_[+1(2.61e-05)]_2_[+2(7.56e-06)]_\ 21 chr2L:18714244-18714364 4.30e-01 120 chr2R:17639691-17639811 1.37e-01 120 chr3L:22940377-22940497 6.56e-02 80_[+2(7.56e-06)]_32 chr3R:4969385-4969505 4.29e-01 120 chrX:5817347-5817467 3.61e-02 120 chr2L:15306997-15307117 1.21e-01 10_[+1(3.40e-05)]_102 chr3R:30527456-30527576 4.16e-03 69_[+5(3.19e-05)]_43 chr3L:22634260-22634380 8.53e-02 120 chr2L:2195488-2195608 1.28e-04 1_[+3(1.84e-05)]_34_[+4(4.44e-06)]_\ 69 chrX:6728865-6728985 8.89e-02 120 chrX:21605686-21605806 2.58e-02 23_[+3(5.03e-05)]_89 chr2R:9094695-9094815 3.83e-02 120 chr2L:16859777-16859897 5.83e-03 120 chr2R:10252682-10252802 1.22e-01 120 chr2R:22298081-22298201 8.73e-01 120 chrX:3726136-3726256 3.25e-01 120 chr2L:11948618-11948738 4.56e-03 61_[+1(4.20e-05)]_51 chrX:12202847-12202967 3.19e-01 120 chr3R:16180583-16180703 2.70e-01 120 chr3L:9751792-9751912 4.55e-02 27_[+2(4.63e-06)]_85 chr3L:15146689-15146809 2.01e-02 43_[+1(5.02e-05)]_69 chr3L:17669640-17669760 7.08e-03 48_[+4(4.31e-05)]_3_[+3(5.03e-05)]_\ 53 chr2R:18754713-18754833 7.97e-03 63_[+1(1.30e-05)]_49 chr3L:10321847-10321967 1.22e-01 120 chr2L:7811101-7811221 7.48e-02 2_[+1(3.40e-05)]_110 chrX:21175001-21175121 7.50e-02 120 chr3L:9752009-9752129 8.89e-01 120 chrX:5954227-5954347 2.74e-01 120 chr2R:11410888-11411008 1.89e-02 32_[+2(5.89e-05)]_80 chrX:4699525-4699645 8.23e-01 120 chr2L:19590743-19590863 4.83e-02 32_[+1(6.67e-05)]_80 chrX:7162283-7162403 6.92e-01 120 chr3L:15637077-15637197 3.41e-01 120 chr3R:31231278-31231398 2.22e-01 120 chr3R:23522641-23522761 1.00e+00 120 chr2R:16783367-16783487 3.65e-01 120 chrX:1201023-1201143 5.20e-01 120 chr3R:27651836-27651956 4.44e-02 120 chrX:123946-124066 7.06e-03 40_[+1(2.61e-05)]_72 chr2R:15424389-15424509 8.84e-01 120 chr3L:14212824-14212944 6.36e-01 120 chr3R:6706462-6706582 6.85e-01 120 chr2R:8992384-8992504 1.85e-02 108_[+2(2.53e-05)]_4 chr2L:15096878-15096998 2.41e-01 120 chr3L:16051333-16051453 9.58e-01 120 chr2L:2957134-2957254 1.22e-01 120 chr3R:27657025-27657145 3.10e-01 120 chr3L:2885700-2885820 1.13e-02 44_[+4(2.64e-05)]_68 chr2L:5270383-5270503 9.91e-01 120 chr2L:16852721-16852841 3.49e-03 120 chrX:11434090-11434210 1.07e-02 42_[+3(8.81e-05)]_70 chr3R:12650669-12650789 2.14e-01 42_[+3(8.81e-05)]_70 chr2L:20851722-20851842 6.93e-03 8_[+5(3.19e-05)]_104 chr3R:20464475-20464595 6.19e-02 47_[+5(3.19e-05)]_65 chrX:17790284-17790404 4.98e-03 47_[+1(2.61e-05)]_65 chr3L:9047234-9047354 9.76e-01 120 chr3L:22470394-22470514 2.48e-02 49_[+4(3.57e-05)]_63 chr3L:11224775-11224895 1.10e-01 61_[+1(1.30e-05)]_51 chr2L:8326980-8327100 2.14e-02 22_[+5(3.19e-05)]_36_[+5(3.19e-05)]_\ 46 chr3L:13860160-13860280 4.31e-01 120 chr3L:1971165-1971285 1.33e-01 120 chrX:8210754-8210874 3.05e-02 73_[+4(1.91e-05)]_39 chrX:2112811-2112931 5.20e-01 120 chrX:1287145-1287265 2.96e-01 120 chrX:12035352-12035472 9.96e-04 27_[+5(3.19e-05)]_59_[+2(4.63e-06)]_\ 18 chrX:843694-843814 2.67e-01 120 chr2L:576897-577017 4.03e-03 60_[+3(9.99e-05)]_52 chr3L:20104059-20104179 7.30e-01 120 chr3L:6689077-6689197 2.41e-01 120 chrX:18621973-18622093 6.32e-03 3_[+2(4.63e-06)]_109 chr2L:12133555-12133675 4.94e-01 120 chr2L:19378723-19378843 2.28e-02 91_[+1(5.84e-05)]_21 chr3R:16351171-16351291 1.77e-02 120 chr3L:248209-248329 2.77e-01 120 chrX:18805127-18805247 1.59e-02 69_[+3(7.53e-05)]_43 chr3R:4705253-4705373 5.38e-01 120 chr3R:15913281-15913401 3.04e-04 40_[+3(5.46e-05)]_38_[+4(1.91e-05)]_\ 1_[+3(1.13e-05)]_17 chr3R:15493364-15493484 1.14e-02 48_[+2(3.43e-05)]_37_[+3(5.46e-05)]_\ 19 chr2L:1006698-1006818 7.23e-02 120 chr2L:11172099-11172219 3.76e-02 75_[+1(1.30e-05)]_37 chr2L:17734796-17734916 6.71e-02 120 chr3L:4840265-4840385 1.35e-03 100_[+4(1.91e-05)]_12 chrX:18137962-18138082 1.06e-01 41_[+1(3.40e-05)]_71 chr2L:14288012-14288132 1.35e-01 84_[+1(5.84e-05)]_28 chr3R:30467179-30467299 4.13e-02 61_[+1(1.30e-05)]_51 chrX:10728650-10728770 5.57e-01 120 chrX:18018627-18018747 4.23e-04 41_[+3(3.64e-05)]_58_[+5(3.19e-05)]_\ 5 chr3L:15268347-15268467 9.48e-01 120 chr2R:18553836-18553956 1.37e-01 18_[+5(3.19e-05)]_94 chr3R:11344074-11344194 5.03e-01 120 chr2R:22293240-22293360 4.99e-01 120 chr3R:6709799-6709919 3.44e-02 6_[+4(1.91e-05)]_106 chrX:17695752-17695872 1.45e-02 120 chr2R:8797790-8797910 9.53e-01 120 chr3L:12732876-12732996 4.94e-02 38_[+2(2.53e-05)]_74 chr3L:5343438-5343558 5.40e-03 10_[+5(3.19e-05)]_102 chr3R:21889333-21889453 6.54e-02 17_[+1(1.30e-05)]_95 chr2L:16223878-16223998 2.33e-01 21_[+5(3.19e-05)]_19_[+5(3.19e-05)]_\ 64 chrX:15292923-15293043 6.10e-01 120 chrX:20632265-20632385 4.36e-01 120 chr3L:6234315-6234435 4.39e-01 120 chr3L:4840551-4840671 1.45e-01 120 chrX:18704027-18704147 8.78e-03 67_[+2(1.33e-05)]_45 chrX:10330091-10330211 2.47e-01 120 chr3R:30870825-30870945 8.57e-01 120 chr2L:19393891-19394011 6.36e-02 120 chrX:15175215-15175335 7.38e-03 53_[+1(1.30e-05)]_59 chr3R:13674814-13674934 8.42e-01 120 chr2L:9612776-9612896 1.64e-01 120 chr2L:19915352-19915472 1.46e-04 33_[+1(2.61e-05)]_38_[+4(3.85e-05)]_\ 33 chr2L:1118265-1118385 4.59e-04 33_[+3(7.53e-05)]_20_[+3(3.64e-05)]_\ 51 chr3L:12857723-12857843 8.85e-01 120 chr3R:16898538-16898658 6.33e-04 17_[+1(3.40e-05)]_66_[+4(7.25e-06)]_\ 21 chrX:3841745-3841865 1.95e-02 120 chr2R:8665388-8665508 1.57e-01 120 chr3R:6009715-6009835 5.38e-01 120 chr3L:4626446-4626566 6.26e-01 120 chrX:2113015-2113135 9.11e-01 120 chr2R:6037745-6037865 3.61e-02 105_[+4(2.64e-05)]_7 chrX:19326876-19326996 4.87e-02 90_[+1(5.84e-05)]_22 chr2R:7940567-7940687 3.45e-02 13_[+2(2.53e-05)]_99 chr3L:9442685-9442805 1.90e-01 120 chr3R:4905936-4906056 4.02e-01 120 chrX:12764974-12765094 8.86e-01 120 chrX:2524605-2524725 2.99e-02 59_[+3(3.64e-05)]_53 chrX:18321489-18321609 2.54e-02 51_[+3(5.03e-05)]_61 chr3R:19017360-19017480 4.82e-02 120 chr2R:25190176-25190296 6.78e-01 120 chr3R:7644555-7644675 6.81e-01 120 chr3L:10463258-10463378 6.71e-02 77_[+1(7.50e-05)]_35 chr3L:2228749-2228869 6.06e-02 56_[+4(2.64e-05)]_56 chr3L:16930619-16930739 3.29e-04 16_[+3(8.81e-05)]_65_[+5(5.20e-05)]_\ 23 chr3R:4969588-4969708 2.87e-01 120 chr3R:19014166-19014286 6.06e-02 120 chr2L:18776697-18776817 4.23e-04 15_[+2(4.63e-06)]_61_[+1(5.02e-05)]_\ 28 chr2R:7186674-7186794 8.37e-01 120 chr3L:15268142-15268262 3.92e-03 32_[+4(3.10e-05)]_80 chrX:11520408-11520528 1.28e-02 120 chrX:7967158-7967278 6.39e-02 120 chr2R:10252881-10253001 9.52e-01 120 chr3R:13833639-13833759 2.74e-01 120 chr2L:21397357-21397477 6.80e-02 37_[+3(1.84e-05)]_75 chr3L:12067039-12067159 9.65e-01 120 chr3R:25591593-25591713 8.56e-01 120 chr4:90066-90186 9.09e-01 120 chr3L:18460452-18460572 1.91e-03 67_[+4(1.91e-05)]_6_[+3(2.52e-05)]_\ 31 chr2R:18807667-18807787 8.98e-01 120 chrX:18805326-18805446 1.37e-01 10_[+2(6.52e-05)]_102 chr4:89860-89980 8.85e-01 120 chr3L:332613-332733 1.39e-01 76_[+3(5.03e-05)]_36 chr2R:16871988-16872108 3.45e-01 120 chr3L:12066800-12066920 1.98e-03 24_[+2(4.63e-06)]_88 chr3L:710884-711004 7.13e-01 120 chrX:11347943-11348063 4.70e-03 79_[+3(1.13e-05)]_33 chr2R:6810468-6810588 4.92e-02 67_[+3(3.64e-05)]_45 chrX:19325893-19326013 5.41e-03 27_[+2(4.19e-05)]_75_[+1(2.61e-05)]_\ 2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************