******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/phol.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10230544-10230664 1.0000 120 chr3R:11819051-11819171 1.0000 120 chr2R:16179209-16179329 1.0000 120 chr2L:5055702-5055822 1.0000 120 chr2R:11368077-11368197 1.0000 120 chr2R:14870620-14870740 1.0000 120 chr3R:18385764-18385884 1.0000 120 chr2R:7962619-7962739 1.0000 120 chr3L:14003587-14003707 1.0000 120 chr2R:12140259-12140379 1.0000 120 chr2R:5663147-5663267 1.0000 120 chr2R:11970606-11970726 1.0000 120 chr3R:12627253-12627373 1.0000 120 chr2R:18135388-18135508 1.0000 120 chr3R:11222740-11222860 1.0000 120 chr3L:3148765-3148885 1.0000 120 chr2R:11452721-11452841 1.0000 120 chr2L:3711677-3711797 1.0000 120 chr3L:7339615-7339735 1.0000 120 chr2L:6000111-6000231 1.0000 120 chr2R:17027803-17027923 1.0000 120 chr3L:20241408-20241528 1.0000 120 chr2R:24186866-24186986 1.0000 120 chr3R:28812008-28812128 1.0000 120 chr2R:8068203-8068323 1.0000 120 chr2R:13249784-13249904 1.0000 120 chr3R:28811304-28811424 1.0000 120 chrX:9149269-9149389 1.0000 120 chr3R:24870493-24870613 1.0000 120 chr3R:21359692-21359812 1.0000 120 chr3R:8240450-8240570 1.0000 120 chr2R:14152587-14152707 1.0000 120 chr2L:12498697-12498817 1.0000 120 chr2R:8914508-8914628 1.0000 120 chr3L:21634410-21634530 1.0000 120 chr4:879129-879249 1.0000 120 chr3R:9258956-9259076 1.0000 120 chr2L:22247784-22247904 1.0000 120 chr3R:7080349-7080469 1.0000 120 chr3R:15972626-15972746 1.0000 120 chr3R:18918675-18918795 1.0000 120 chr3R:5659867-5659987 1.0000 120 chr2R:11853073-11853193 1.0000 120 chr2R:11892770-11892890 1.0000 120 chr3R:11949627-11949747 1.0000 120 chr3L:16595041-16595161 1.0000 120 chr3R:31061134-31061254 1.0000 120 chr3R:13011675-13011795 1.0000 120 chr2R:13502887-13503007 1.0000 120 chrX:10854844-10854964 1.0000 120 chr2R:6085378-6085498 1.0000 120 chr2R:12162930-12163050 1.0000 120 chr3R:16683025-16683145 1.0000 120 chr2R:5937595-5937715 1.0000 120 chr3R:16830147-16830267 1.0000 120 chr3R:26876549-26876669 1.0000 120 chr3R:7186947-7187067 1.0000 120 chr2L:6852473-6852593 1.0000 120 chr3R:21376989-21377109 1.0000 120 chr3L:3466359-3466479 1.0000 120 chrX:6534133-6534253 1.0000 120 chrX:5317248-5317368 1.0000 120 chr3L:20809581-20809701 1.0000 120 chr2R:9116574-9116694 1.0000 120 chrX:11137001-11137121 1.0000 120 chr3R:28600565-28600685 1.0000 120 chr2R:19266063-19266183 1.0000 120 chr2L:21221467-21221587 1.0000 120 chr3L:17644358-17644478 1.0000 120 chr2R:8131576-8131696 1.0000 120 chr3R:7892419-7892539 1.0000 120 chr3R:16899896-16900016 1.0000 120 chr2R:20327194-20327314 1.0000 120 chrX:8696471-8696591 1.0000 120 chr2L:12707808-12707928 1.0000 120 chr3R:4811737-4811857 1.0000 120 chrX:19190117-19190237 1.0000 120 chr2R:24402349-24402469 1.0000 120 chr2R:12916414-12916534 1.0000 120 chr3R:5659155-5659275 1.0000 120 chr3R:4403426-4403546 1.0000 120 chr3L:20771476-20771596 1.0000 120 chr2R:24787383-24787503 1.0000 120 chr3R:17719430-17719550 1.0000 120 chr2L:6663864-6663984 1.0000 120 chr3R:4645553-4645673 1.0000 120 chr2L:5542107-5542227 1.0000 120 chr2R:11149994-11150114 1.0000 120 chr3L:1568550-1568670 1.0000 120 chr3R:13660034-13660154 1.0000 120 chr3R:14655565-14655685 1.0000 120 chr2R:4728931-4729051 1.0000 120 chrX:12273081-12273201 1.0000 120 chr3R:30388002-30388122 1.0000 120 chr3L:224743-224863 1.0000 120 chrX:1289102-1289222 1.0000 120 chrX:2010087-2010207 1.0000 120 chr2L:10842353-10842473 1.0000 120 chr3R:13646881-13647001 1.0000 120 chrX:5594022-5594142 1.0000 120 chr2R:18133806-18133926 1.0000 120 chr2R:17592700-17592820 1.0000 120 chr2L:114562-114682 1.0000 120 chr3R:9003946-9004066 1.0000 120 chr2R:21168567-21168687 1.0000 120 chr2L:18934746-18934866 1.0000 120 chr4:68881-69001 1.0000 120 chr3R:24320463-24320583 1.0000 120 chr2L:1049465-1049585 1.0000 120 chr3L:9411197-9411317 1.0000 120 chr2L:3539393-3539513 1.0000 120 chr3L:1502528-1502648 1.0000 120 chr3R:17088224-17088344 1.0000 120 chr4:787519-787639 1.0000 120 chr3R:9510059-9510179 1.0000 120 chrX:9089452-9089572 1.0000 120 chr2R:17457864-17457984 1.0000 120 chr2R:24186659-24186779 1.0000 120 chr2L:21681593-21681713 1.0000 120 chr2R:9195019-9195139 1.0000 120 chrX:10082413-10082533 1.0000 120 chr3R:10052813-10052933 1.0000 120 chr3R:16948706-16948826 1.0000 120 chr2L:19263671-19263791 1.0000 120 chr3R:17718524-17718644 1.0000 120 chr3R:18156766-18156886 1.0000 120 chr2L:2364401-2364521 1.0000 120 chr2L:12436377-12436497 1.0000 120 chrX:4636262-4636382 1.0000 120 chr3R:20816129-20816249 1.0000 120 chrX:2603852-2603972 1.0000 120 chr3L:5366110-5366230 1.0000 120 chrX:5560612-5560732 1.0000 120 chr3L:14122233-14122353 1.0000 120 chr2R:23907273-23907393 1.0000 120 chrX:15834800-15834920 1.0000 120 chr2L:17557491-17557611 1.0000 120 chr2R:12870177-12870297 1.0000 120 chr3R:9637558-9637678 1.0000 120 chr3R:16783447-16783567 1.0000 120 chr3R:11590052-11590172 1.0000 120 chr3R:18199624-18199744 1.0000 120 chr2L:594959-595079 1.0000 120 chr3L:5765390-5765510 1.0000 120 chr2L:6477021-6477141 1.0000 120 chr2R:6741744-6741864 1.0000 120 chr3R:8820159-8820279 1.0000 120 chr2R:8922683-8922803 1.0000 120 chr2L:21105303-21105423 1.0000 120 chr2R:16856397-16856517 1.0000 120 chr3R:16913645-16913765 1.0000 120 chr3R:17682235-17682355 1.0000 120 chr2R:24844884-24845004 1.0000 120 chr3L:18672384-18672504 1.0000 120 chr3L:8449851-8449971 1.0000 120 chr2L:17477770-17477890 1.0000 120 chr2R:22415644-22415764 1.0000 120 chr2R:24278438-24278558 1.0000 120 chr2L:3540213-3540333 1.0000 120 chr2R:22641343-22641463 1.0000 120 chr2L:19453027-19453147 1.0000 120 chr3L:12861645-12861765 1.0000 120 chr3R:7920397-7920517 1.0000 120 chr3R:16811853-16811973 1.0000 120 chr3R:17540415-17540535 1.0000 120 chr3R:14308067-14308187 1.0000 120 chr3R:12422774-12422894 1.0000 120 chr3R:18981276-18981396 1.0000 120 chr4:205931-206051 1.0000 120 chr2R:19456050-19456170 1.0000 120 chr2L:10240052-10240172 1.0000 120 chr2L:5452231-5452351 1.0000 120 chr3L:16580274-16580394 1.0000 120 chrX:5312171-5312291 1.0000 120 chr2R:12200750-12200870 1.0000 120 chr2R:21128222-21128342 1.0000 120 chr3L:15140700-15140820 1.0000 120 chr3R:29868881-29869001 1.0000 120 chr3L:7225460-7225580 1.0000 120 chr3R:10856753-10856873 1.0000 120 chrX:796817-796937 1.0000 120 chrX:546758-546878 1.0000 120 chr2L:16743351-16743471 1.0000 120 chrX:17397181-17397301 1.0000 120 chr3L:15839596-15839716 1.0000 120 chr2R:6656314-6656434 1.0000 120 chrX:15471975-15472095 1.0000 120 chr2L:22168629-22168749 1.0000 120 chr3L:24976141-24976261 1.0000 120 chr2R:20903608-20903728 1.0000 120 chr2R:7917072-7917192 1.0000 120 chr3R:6992086-6992206 1.0000 120 chrX:11569785-11569905 1.0000 120 chr3L:6955285-6955405 1.0000 120 chr2L:8415646-8415766 1.0000 120 chr3L:8338946-8339066 1.0000 120 chr3R:16882598-16882718 1.0000 120 chr3L:833364-833484 1.0000 120 chrX:22444370-22444490 1.0000 120 chr3L:6752267-6752387 1.0000 120 chr3R:25249734-25249854 1.0000 120 chr3L:19598482-19598602 1.0000 120 chr3L:7510851-7510971 1.0000 120 chr2R:10540719-10540839 1.0000 120 chr3L:6807633-6807753 1.0000 120 chrX:17852635-17852755 1.0000 120 chr3R:14659511-14659631 1.0000 120 chrX:17768199-17768319 1.0000 120 chr2R:7278626-7278746 1.0000 120 chr2R:23851062-23851182 1.0000 120 chr3R:14901537-14901657 1.0000 120 chr2R:12884453-12884573 1.0000 120 chr3L:9854686-9854806 1.0000 120 chr2R:24099095-24099215 1.0000 120 chr3L:9455925-9456045 1.0000 120 chr3R:16847318-16847438 1.0000 120 chr3R:24817327-24817447 1.0000 120 chrX:15450170-15450290 1.0000 120 chr3L:3223514-3223634 1.0000 120 chr3R:14625902-14626022 1.0000 120 chr2L:5525937-5526057 1.0000 120 chr3R:6008279-6008399 1.0000 120 chr2R:17683450-17683570 1.0000 120 chr3R:23157936-23158056 1.0000 120 chr2R:11469582-11469702 1.0000 120 chr3R:29130952-29131072 1.0000 120 chr3R:25591612-25591732 1.0000 120 chr2L:14410382-14410502 1.0000 120 chr3L:2636573-2636693 1.0000 120 chr3R:12985981-12986101 1.0000 120 chr3R:16702961-16703081 1.0000 120 chr3L:9864520-9864640 1.0000 120 chr2L:22249588-22249708 1.0000 120 chr3L:16786983-16787103 1.0000 120 chr3L:15174988-15175108 1.0000 120 chr2L:10970326-10970446 1.0000 120 chr3R:23159455-23159575 1.0000 120 chr2R:20587439-20587559 1.0000 120 chr3R:9628770-9628890 1.0000 120 chr3L:17846404-17846524 1.0000 120 chr2R:9577934-9578054 1.0000 120 chr3L:6904109-6904229 1.0000 120 chr3L:19191004-19191124 1.0000 120 chr3R:14308836-14308956 1.0000 120 chr3R:4821494-4821614 1.0000 120 chr3R:23201160-23201280 1.0000 120 chr3R:20948699-20948819 1.0000 120 chrX:10899355-10899475 1.0000 120 chr3L:19910151-19910271 1.0000 120 chrX:8058516-8058636 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_phol/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/phol.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.221 G 0.222 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.221 G 0.222 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAATGGC MEME-1 width = 8 sites = 124 llr = 1079 E-value = 4.3e-120 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 995a:::: pos.-specific C ::1::::a probability G ::2::aa: matrix T ::1:a::: bits 2.2 2.0 * * 1.7 ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.6 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel AAAATGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19191004-19191124 83 1.72e-05 GCCATGTTGA AAAATGGC TGACTAAAGG chr3R:12985981-12986101 71 1.72e-05 ACCGATACCA AAAATGGC GTCGTGATTT chr3R:6008279-6008399 48 1.72e-05 AGGAGAAAAG AAAATGGC GACGTTGCGT chr3L:3223514-3223634 65 1.72e-05 CATGTACATA AAAATGGC CGCCCTGACG chr3R:16847318-16847438 37 1.72e-05 CGCTCCCACC AAAATGGC CGCACTAGCC chr3R:14901537-14901657 51 1.72e-05 TGTCACTTTC AAAATGGC CGCGACGTGC chrX:17768199-17768319 45 1.72e-05 CTCTCGCGGC AAAATGGC CACTCATGGC chr3L:19598482-19598602 33 1.72e-05 GCCTGCTTCT AAAATGGC GCCGTTTTCA chr3L:6752267-6752387 44 1.72e-05 TCTTGCAATA AAAATGGC GTTCACCATT chr2R:7917072-7917192 89 1.72e-05 TCGTGCTTTG AAAATGGC GAACAAAAGA chr2L:22168629-22168749 76 1.72e-05 CGACTGATTA AAAATGGC GACGGTGAGA chr3R:14308067-14308187 40 1.72e-05 CTGCTAAGAA AAAATGGC GTCGCGCTGT chr2L:3540213-3540333 79 1.72e-05 GCCATTTGCC AAAATGGC GGACGCCAAG chr3R:8820159-8820279 67 1.72e-05 AATCACTTTC AAAATGGC GACGGGCTGG chr3L:5765390-5765510 61 1.72e-05 TAATAATTTT AAAATGGC GACTTAATGA chr3R:11590052-11590172 17 1.72e-05 GGGCAGCGGA AAAATGGC CAAAACTAAA chrX:2603852-2603972 39 1.72e-05 AGTATTTTTA AAAATGGC GTTGTTATCG chrX:4636262-4636382 71 1.72e-05 GTGGATTTTC AAAATGGC ATTTGGTGTC chr2L:21681593-21681713 41 1.72e-05 TGCTGATTTA AAAATGGC GTCCATACAC chr2R:17457864-17457984 53 1.72e-05 ACGAGTAAAG AAAATGGC GTAATCACGC chr3R:9510059-9510179 37 1.72e-05 CCGCGAAAAC AAAATGGC GACCGCGTCA chr3L:9411197-9411317 76 1.72e-05 TGTGTATAAC AAAATGGC GTCCTCGCAA chr2L:18934746-18934866 112 1.72e-05 TTTTCAAGGC AAAATGGC G chr2R:21168567-21168687 52 1.72e-05 AAGCGTGAAA AAAATGGC TGCCCTAAAG chr2R:17592700-17592820 105 1.72e-05 ACCACTAATA AAAATGGC GTTCGAAG chr3L:224743-224863 84 1.72e-05 CTATATAAAC AAAATGGC GTCAGGATGG chrX:12273081-12273201 24 1.72e-05 GCGGCTACTG AAAATGGC AACCACACAC chr3R:17719430-17719550 45 1.72e-05 TATCGAGTGC AAAATGGC GGCATTTTAA chr2R:12916414-12916534 56 1.72e-05 TTTGCGCCAC AAAATGGC GTCGGCACGT chr2R:24402349-24402469 69 1.72e-05 GCGCCGGCGA AAAATGGC CGTTTAGGTC chrX:8696471-8696591 82 1.72e-05 AAACAGAAAC AAAATGGC GTCTGCTCGT chr2L:21221467-21221587 82 1.72e-05 GGACGCATGA AAAATGGC GGCGTCCTCA chr3L:20809581-20809701 97 1.72e-05 ACCACTACAA AAAATGGC CGCTGAGCTG chr2R:5937595-5937715 39 1.72e-05 GAGCGACTTG AAAATGGC GCACGGCATG chr3R:11949627-11949747 72 1.72e-05 GCTGAGCAAG AAAATGGC GTAGAAGGCG chr2R:11892770-11892890 48 1.72e-05 TGGTTTTGGT AAAATGGC TGCCGCTGCA chr3L:21634410-21634530 40 1.72e-05 CCAAAACAAC AAAATGGC TGATCCTTCA chr3R:21359692-21359812 68 1.72e-05 AACTACAACA AAAATGGC GTGCCAACAG chrX:9149269-9149389 80 1.72e-05 ACGCCGACAG AAAATGGC GTCTGTCTGA chr2R:13249784-13249904 55 1.72e-05 cacggctgat aaaatggc ggacaacatg chr3L:20241408-20241528 88 1.72e-05 AACAATCTCC AAAATGGC CGCTCTGCTG chr2L:6000111-6000231 43 1.72e-05 AAGATTGAAC AAAATGGC GGTTTTCTTG chr2L:3711677-3711797 26 1.72e-05 TTTTCGCGCC AAAATGGC AAACATTAAC chr3R:11222740-11222860 69 1.72e-05 ACACACACAC AAAATGGC AGCCGACACG chr2R:18135388-18135508 60 1.72e-05 CATATGTTGA AAAATGGC TGACACAAAT chr2L:10230544-10230664 78 1.72e-05 TGATAACCAC AAAATGGC GAAGATACAG chrX:10899355-10899475 98 3.13e-05 ACGGCTGTCA AAGATGGC ATATGGCTAC chr2R:10540719-10540839 48 3.13e-05 GGGAAAAACC AAGATGGC GGCCACCAAG chr3R:16882598-16882718 52 3.13e-05 AGATAAATCC AAGATGGC CGACCGGCAG chr2R:22641343-22641463 73 3.13e-05 ATTAGAAAGG AAGATGGC CGTTTCAGAG chr2R:8922683-8922803 59 3.13e-05 TGTGAATGGC AAGATGGC ACGGCTTGGC chr2L:594959-595079 79 3.13e-05 GTCCAGGATA AAGATGGC GCTACAGAGA chr2L:17557491-17557611 51 3.13e-05 CAGCAGCGCA AAGATGGC GTCGCCCGCT chrX:5594022-5594142 99 3.13e-05 TACGCTCGCA AAGATGGC GCTGCAAGTT chrX:1289102-1289222 56 3.13e-05 ATCCTTTTTC AAGATGGC TGCACCTTAC chr3R:14655565-14655685 101 3.13e-05 TCGGGCTGAC AAGATGGC GGACAATACA chr3R:7892419-7892539 58 3.13e-05 GCAGTTTTCC AAGATGGC CGGCGGCGGT chr3L:17644358-17644478 76 3.13e-05 GAGTGGAAAA AAGATGGC GGCCCAGACG chr2R:19266063-19266183 36 3.13e-05 TGGGAAAGCC AAGATGGC GACCTCGCTA chr3R:16830147-16830267 11 3.13e-05 GGCAATAAGA AAGATGGC AGCGCAGCCA chr2L:22247784-22247904 45 3.13e-05 AAAAGAAAGA AAGATGGC TACTTGAATA chr2R:8914508-8914628 77 3.13e-05 AACTCGCTAA AAGATGGC GACGCGCACT chr2R:12140259-12140379 37 3.13e-05 ATGGCTTTAA AAGATGGC GCCTATTACA chr2R:16179209-16179329 51 3.13e-05 CTCTCTATCC AAGATGGC CGTCGTAACA chr3R:20948699-20948819 104 4.52e-05 AAATTAAAAT AACATGGC GTTAAGGTC chr3R:14625902-14626022 78 4.52e-05 CCTTTCACCA AACATGGC GTCGCTTTAC chr2R:23851062-23851182 44 4.52e-05 GCAAGGGCAA AACATGGC CACCTATCGG chr3R:14659511-14659631 47 4.52e-05 TTGTGTTGGC AACATGGC TGAAGCTGTA chrX:17397181-17397301 58 4.52e-05 CGGTGCCGGC AACATGGC GCTGCGCGAG chr3R:16811853-16811973 84 4.52e-05 GATGGAATCC AACATGGC TGCCGCAGTG chr2R:24278438-24278558 90 4.52e-05 GCCAACAGAC AACATGGC GACCGGAAAT chr3L:18672384-18672504 77 4.52e-05 TGCTCTAGAA AACATGGC GTCGCGAAAA chr2R:24844884-24845004 59 4.52e-05 TACTACACGC AACATGGC GTCGCCGCTG chr2R:16856397-16856517 81 4.52e-05 TGTGTGTATA AACATGGC GTCGTTGTGG chr2R:6741744-6741864 46 4.52e-05 TCAAACAAAC AACATGGC CGCCATTTGG chrX:5560612-5560732 46 4.52e-05 TCCCCTCGGC AACATGGC GCATGTGCGA chr3L:1568550-1568670 70 4.52e-05 GACAGAAAAC AACATGGC TGACACGAAA chr3R:5659155-5659275 47 4.52e-05 ACTTTCCAGC AACATGGC GGCCGTGGCC chr2R:20327194-20327314 87 4.52e-05 CGATACTACC AACATGGC CGTCGAGAAA chrX:8058516-8058636 80 6.32e-05 GCCAAATGCA AATATGGC GGCATGTCGC chr3L:19910151-19910271 54 6.32e-05 GGCTTCAACA AATATGGC GGAGCGGAGA chr3R:23159455-23159575 68 6.32e-05 CCTTTTTGAC AATATGGC AGCGCTCTAA chr3L:2636573-2636693 105 6.32e-05 GTTTTAATCC AATATGGC AGCCATTT chr3L:9455925-9456045 55 6.32e-05 TTTGCCGGTT AATATGGC GGAATTGTAT chrX:11569785-11569905 61 6.32e-05 TCAATTTTTC AATATGGC GTCGATCGAA chr2R:19456050-19456170 110 6.32e-05 ACACTGCTAC AATATGGC TGC chr3R:18156766-18156886 39 6.32e-05 CGCAAACTTC AATATGGC GGCCGCGACA chr2R:18133806-18133926 44 6.32e-05 GTAAATAAAC AATATGGC GGCGTAGGCT chr2R:4728931-4729051 39 6.32e-05 GTGTTTGAAG AATATGGC CGACCTGTAG chr2R:14152587-14152707 70 6.32e-05 TTTCTAGCAA AATATGGC GTGCCAAACG chr3R:28812008-28812128 104 6.32e-05 TTGCAATGTT AATATGGC GTCAGAGGG chr2R:14870620-14870740 36 6.32e-05 ACGAAAATTC AATATGGC GGCCATGAGC chr3R:23201160-23201280 31 7.72e-05 TAGCGCAAGA GAAATGGC GCTCTCAGCT chr2R:9577934-9578054 72 7.72e-05 ACGAGCGAGT GAAATGGC AATAGCCCAT chrX:10854844-10854964 46 7.72e-05 AATTCAAATT GAAATGGC GGCCAAGAGT chr2R:8068203-8068323 66 7.72e-05 TGGCGTTGCA GAAATGGC GTCGAAGTAT chr3R:16702961-16703081 66 9.52e-05 AGCCAAATGA ATAATGGC GGTTGCCGCA chr3L:833364-833484 32 1.17e-04 TATAAAAGTA AAAATGGT GGTGCATAAA chr4:205931-206051 8 1.17e-04 CAACTAC AAAATGGT GGATATTCAT chr2L:17477770-17477890 76 1.17e-04 CGTTGCAAAC AAAATGGT GAGCACGGGG chr3L:8449851-8449971 87 1.17e-04 ATATTTTTAC AAAATGGT GGCTTCTTCG chr3R:16683025-16683145 85 1.17e-04 ATGGCCTCGC AAAATGGT TCCCACCCCC chrX:15450170-15450290 13 1.64e-04 ATTTTAAATT TAAATGGC AACAATCGTG chr2R:12884453-12884573 79 1.64e-04 CCGTGCGAGA GAGATGGC CCGATACAAG chrX:15471975-15472095 102 1.64e-04 ATAAATTCTA TAAATGGC GCCCTCAGCA chr2R:6656314-6656434 52 1.64e-04 TGGCCGCCAA AAAATGCC GATGCCGCGC chr3R:7920397-7920517 82 1.64e-04 CATTCTGAAA TAAATGGC GCTGATTTAC chrX:5317248-5317368 104 1.64e-04 CTAGACGCTA GAGATGGC AAATGCGCC chr3R:9258956-9259076 89 1.64e-04 GTTGTATTTT AAAATGCC CCGAAAGAAG chr3L:16786983-16787103 38 2.15e-04 TCAAGCTTTC AAAGTGGC GCATTTATTT chr3L:8338946-8339066 79 2.15e-04 GCACTGTTTA AAAATGTC GATAATGACT chr3R:29868881-29869001 63 2.15e-04 TCCACAATCA AAAATGTC GGTTATCGAT chr3L:12861645-12861765 56 2.15e-04 AAATTCCCGC ATGATGGC GTCCCCTTGC chr3R:16899896-16900016 42 2.15e-04 TTTCACATCC ATGATGGC TGCCGCTGTC chr3L:7225460-7225580 50 2.41e-04 GTTAGCAACC ATCATGGC TACCTCGCCA chr2R:12870177-12870297 66 2.41e-04 TGCCATTTTT ATCATGGC GATTTCTTTT chr2L:22249588-22249708 59 2.80e-04 AAATTAAGCA AAAATAGC AATTTCTCTG chrX:2010087-2010207 59 2.80e-04 ATGGGAACGG AAAATAGC TGGTTGAAAT chr3L:15140700-15140820 83 3.37e-04 CTGGCAACCA AAGATGCC AGGCTAGCAT chr2R:11853073-11853193 68 3.37e-04 GCAATTAAAA ACAATGGC TGCTTGCAGC chr3R:6992086-6992206 108 3.74e-04 tggaattggg attATGGC CGCTG chrX:5312171-5312291 110 4.21e-04 TTCAGCATGC AAATTGGC GGG chr3R:12422774-12422894 82 4.21e-04 CCATTTTGCA AAGATGTC CTTTAAGGTG chr2L:10842353-10842473 112 4.21e-04 ACTTATTAAA AAGGTGGC G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19191004-19191124 1.7e-05 82_[+1]_30 chr3R:12985981-12986101 1.7e-05 70_[+1]_42 chr3R:6008279-6008399 1.7e-05 47_[+1]_65 chr3L:3223514-3223634 1.7e-05 64_[+1]_48 chr3R:16847318-16847438 1.7e-05 36_[+1]_76 chr3R:14901537-14901657 1.7e-05 50_[+1]_62 chrX:17768199-17768319 1.7e-05 44_[+1]_68 chr3L:19598482-19598602 1.7e-05 32_[+1]_80 chr3L:6752267-6752387 1.7e-05 43_[+1]_69 chr2R:7917072-7917192 1.7e-05 88_[+1]_24 chr2L:22168629-22168749 1.7e-05 75_[+1]_37 chr3R:14308067-14308187 1.7e-05 39_[+1]_73 chr2L:3540213-3540333 1.7e-05 78_[+1]_34 chr3R:8820159-8820279 1.7e-05 66_[+1]_46 chr3L:5765390-5765510 1.7e-05 60_[+1]_52 chr3R:11590052-11590172 1.7e-05 16_[+1]_96 chrX:2603852-2603972 1.7e-05 38_[+1]_74 chrX:4636262-4636382 1.7e-05 70_[+1]_42 chr2L:21681593-21681713 1.7e-05 40_[+1]_72 chr2R:17457864-17457984 1.7e-05 52_[+1]_60 chr3R:9510059-9510179 1.7e-05 36_[+1]_76 chr3L:9411197-9411317 1.7e-05 75_[+1]_37 chr2L:18934746-18934866 1.7e-05 111_[+1]_1 chr2R:21168567-21168687 1.7e-05 51_[+1]_61 chr2R:17592700-17592820 1.7e-05 104_[+1]_8 chr3L:224743-224863 1.7e-05 83_[+1]_29 chrX:12273081-12273201 1.7e-05 23_[+1]_89 chr3R:17719430-17719550 1.7e-05 44_[+1]_68 chr2R:12916414-12916534 1.7e-05 55_[+1]_57 chr2R:24402349-24402469 1.7e-05 68_[+1]_44 chrX:8696471-8696591 1.7e-05 81_[+1]_31 chr2L:21221467-21221587 1.7e-05 81_[+1]_31 chr3L:20809581-20809701 1.7e-05 96_[+1]_16 chr2R:5937595-5937715 1.7e-05 38_[+1]_74 chr3R:11949627-11949747 1.7e-05 71_[+1]_41 chr2R:11892770-11892890 1.7e-05 47_[+1]_65 chr3L:21634410-21634530 1.7e-05 39_[+1]_73 chr3R:21359692-21359812 1.7e-05 67_[+1]_45 chrX:9149269-9149389 1.7e-05 79_[+1]_33 chr2R:13249784-13249904 1.7e-05 54_[+1]_58 chr3L:20241408-20241528 1.7e-05 87_[+1]_25 chr2L:6000111-6000231 1.7e-05 42_[+1]_70 chr2L:3711677-3711797 1.7e-05 25_[+1]_87 chr3R:11222740-11222860 1.7e-05 68_[+1]_44 chr2R:18135388-18135508 1.7e-05 59_[+1]_53 chr2L:10230544-10230664 1.7e-05 77_[+1]_35 chrX:10899355-10899475 3.1e-05 97_[+1]_15 chr2R:10540719-10540839 3.1e-05 47_[+1]_65 chr3R:16882598-16882718 3.1e-05 51_[+1]_61 chr2R:22641343-22641463 3.1e-05 72_[+1]_40 chr2R:8922683-8922803 3.1e-05 58_[+1]_54 chr2L:594959-595079 3.1e-05 78_[+1]_34 chr2L:17557491-17557611 3.1e-05 50_[+1]_62 chrX:5594022-5594142 3.1e-05 98_[+1]_14 chrX:1289102-1289222 3.1e-05 55_[+1]_57 chr3R:14655565-14655685 3.1e-05 100_[+1]_12 chr3R:7892419-7892539 3.1e-05 57_[+1]_55 chr3L:17644358-17644478 3.1e-05 75_[+1]_37 chr2R:19266063-19266183 3.1e-05 35_[+1]_77 chr3R:16830147-16830267 3.1e-05 10_[+1]_102 chr2L:22247784-22247904 3.1e-05 44_[+1]_68 chr2R:8914508-8914628 3.1e-05 76_[+1]_36 chr2R:12140259-12140379 3.1e-05 36_[+1]_76 chr2R:16179209-16179329 3.1e-05 50_[+1]_62 chr3R:20948699-20948819 4.5e-05 103_[+1]_9 chr3R:14625902-14626022 4.5e-05 77_[+1]_35 chr2R:23851062-23851182 4.5e-05 43_[+1]_69 chr3R:14659511-14659631 4.5e-05 46_[+1]_66 chrX:17397181-17397301 4.5e-05 57_[+1]_55 chr3R:16811853-16811973 4.5e-05 83_[+1]_29 chr2R:24278438-24278558 4.5e-05 89_[+1]_23 chr3L:18672384-18672504 4.5e-05 76_[+1]_36 chr2R:24844884-24845004 4.5e-05 58_[+1]_54 chr2R:16856397-16856517 4.5e-05 80_[+1]_32 chr2R:6741744-6741864 4.5e-05 45_[+1]_67 chrX:5560612-5560732 4.5e-05 45_[+1]_67 chr3L:1568550-1568670 4.5e-05 69_[+1]_43 chr3R:5659155-5659275 4.5e-05 46_[+1]_66 chr2R:20327194-20327314 4.5e-05 86_[+1]_26 chrX:8058516-8058636 6.3e-05 79_[+1]_33 chr3L:19910151-19910271 6.3e-05 53_[+1]_59 chr3R:23159455-23159575 6.3e-05 67_[+1]_45 chr3L:2636573-2636693 6.3e-05 104_[+1]_8 chr3L:9455925-9456045 6.3e-05 54_[+1]_58 chrX:11569785-11569905 6.3e-05 60_[+1]_52 chr2R:19456050-19456170 6.3e-05 109_[+1]_3 chr3R:18156766-18156886 6.3e-05 38_[+1]_74 chr2R:18133806-18133926 6.3e-05 43_[+1]_69 chr2R:4728931-4729051 6.3e-05 38_[+1]_74 chr2R:14152587-14152707 6.3e-05 69_[+1]_43 chr3R:28812008-28812128 6.3e-05 103_[+1]_9 chr2R:14870620-14870740 6.3e-05 35_[+1]_77 chr3R:23201160-23201280 7.7e-05 30_[+1]_82 chr2R:9577934-9578054 7.7e-05 71_[+1]_41 chrX:10854844-10854964 7.7e-05 45_[+1]_67 chr2R:8068203-8068323 7.7e-05 65_[+1]_47 chr3R:16702961-16703081 9.5e-05 65_[+1]_47 chr3L:833364-833484 0.00012 31_[+1]_81 chr4:205931-206051 0.00012 7_[+1]_105 chr2L:17477770-17477890 0.00012 75_[+1]_37 chr3L:8449851-8449971 0.00012 86_[+1]_26 chr3R:16683025-16683145 0.00012 84_[+1]_28 chrX:15450170-15450290 0.00016 12_[+1]_100 chr2R:12884453-12884573 0.00016 78_[+1]_34 chrX:15471975-15472095 0.00016 101_[+1]_11 chr2R:6656314-6656434 0.00016 51_[+1]_61 chr3R:7920397-7920517 0.00016 81_[+1]_31 chrX:5317248-5317368 0.00016 103_[+1]_9 chr3R:9258956-9259076 0.00016 88_[+1]_24 chr3L:16786983-16787103 0.00021 37_[+1]_75 chr3L:8338946-8339066 0.00021 78_[+1]_34 chr3R:29868881-29869001 0.00021 62_[+1]_50 chr3L:12861645-12861765 0.00021 55_[+1]_57 chr3R:16899896-16900016 0.00021 41_[+1]_71 chr3L:7225460-7225580 0.00024 49_[+1]_63 chr2R:12870177-12870297 0.00024 65_[+1]_47 chr2L:22249588-22249708 0.00028 58_[+1]_54 chrX:2010087-2010207 0.00028 58_[+1]_54 chr3L:15140700-15140820 0.00034 82_[+1]_30 chr2R:11853073-11853193 0.00034 67_[+1]_45 chr3R:6992086-6992206 0.00037 107_[+1]_5 chrX:5312171-5312291 0.00042 109_[+1]_3 chr3R:12422774-12422894 0.00042 81_[+1]_31 chr2L:10842353-10842473 0.00042 111_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAATGGC width=8 seqs=124 chr3L:19191004-19191124 ( 83) AAAATGGC 1 chr3R:12985981-12986101 ( 71) AAAATGGC 1 chr3R:6008279-6008399 ( 48) AAAATGGC 1 chr3L:3223514-3223634 ( 65) AAAATGGC 1 chr3R:16847318-16847438 ( 37) AAAATGGC 1 chr3R:14901537-14901657 ( 51) AAAATGGC 1 chrX:17768199-17768319 ( 45) AAAATGGC 1 chr3L:19598482-19598602 ( 33) AAAATGGC 1 chr3L:6752267-6752387 ( 44) AAAATGGC 1 chr2R:7917072-7917192 ( 89) AAAATGGC 1 chr2L:22168629-22168749 ( 76) AAAATGGC 1 chr3R:14308067-14308187 ( 40) AAAATGGC 1 chr2L:3540213-3540333 ( 79) AAAATGGC 1 chr3R:8820159-8820279 ( 67) AAAATGGC 1 chr3L:5765390-5765510 ( 61) AAAATGGC 1 chr3R:11590052-11590172 ( 17) AAAATGGC 1 chrX:2603852-2603972 ( 39) AAAATGGC 1 chrX:4636262-4636382 ( 71) AAAATGGC 1 chr2L:21681593-21681713 ( 41) AAAATGGC 1 chr2R:17457864-17457984 ( 53) AAAATGGC 1 chr3R:9510059-9510179 ( 37) AAAATGGC 1 chr3L:9411197-9411317 ( 76) AAAATGGC 1 chr2L:18934746-18934866 ( 112) AAAATGGC 1 chr2R:21168567-21168687 ( 52) AAAATGGC 1 chr2R:17592700-17592820 ( 105) AAAATGGC 1 chr3L:224743-224863 ( 84) AAAATGGC 1 chrX:12273081-12273201 ( 24) AAAATGGC 1 chr3R:17719430-17719550 ( 45) AAAATGGC 1 chr2R:12916414-12916534 ( 56) AAAATGGC 1 chr2R:24402349-24402469 ( 69) AAAATGGC 1 chrX:8696471-8696591 ( 82) AAAATGGC 1 chr2L:21221467-21221587 ( 82) AAAATGGC 1 chr3L:20809581-20809701 ( 97) AAAATGGC 1 chr2R:5937595-5937715 ( 39) AAAATGGC 1 chr3R:11949627-11949747 ( 72) AAAATGGC 1 chr2R:11892770-11892890 ( 48) AAAATGGC 1 chr3L:21634410-21634530 ( 40) AAAATGGC 1 chr3R:21359692-21359812 ( 68) AAAATGGC 1 chrX:9149269-9149389 ( 80) AAAATGGC 1 chr2R:13249784-13249904 ( 55) AAAATGGC 1 chr3L:20241408-20241528 ( 88) AAAATGGC 1 chr2L:6000111-6000231 ( 43) AAAATGGC 1 chr2L:3711677-3711797 ( 26) AAAATGGC 1 chr3R:11222740-11222860 ( 69) AAAATGGC 1 chr2R:18135388-18135508 ( 60) AAAATGGC 1 chr2L:10230544-10230664 ( 78) AAAATGGC 1 chrX:10899355-10899475 ( 98) AAGATGGC 1 chr2R:10540719-10540839 ( 48) AAGATGGC 1 chr3R:16882598-16882718 ( 52) AAGATGGC 1 chr2R:22641343-22641463 ( 73) AAGATGGC 1 chr2R:8922683-8922803 ( 59) AAGATGGC 1 chr2L:594959-595079 ( 79) AAGATGGC 1 chr2L:17557491-17557611 ( 51) AAGATGGC 1 chrX:5594022-5594142 ( 99) AAGATGGC 1 chrX:1289102-1289222 ( 56) AAGATGGC 1 chr3R:14655565-14655685 ( 101) AAGATGGC 1 chr3R:7892419-7892539 ( 58) AAGATGGC 1 chr3L:17644358-17644478 ( 76) AAGATGGC 1 chr2R:19266063-19266183 ( 36) AAGATGGC 1 chr3R:16830147-16830267 ( 11) AAGATGGC 1 chr2L:22247784-22247904 ( 45) AAGATGGC 1 chr2R:8914508-8914628 ( 77) AAGATGGC 1 chr2R:12140259-12140379 ( 37) AAGATGGC 1 chr2R:16179209-16179329 ( 51) AAGATGGC 1 chr3R:20948699-20948819 ( 104) AACATGGC 1 chr3R:14625902-14626022 ( 78) AACATGGC 1 chr2R:23851062-23851182 ( 44) AACATGGC 1 chr3R:14659511-14659631 ( 47) AACATGGC 1 chrX:17397181-17397301 ( 58) AACATGGC 1 chr3R:16811853-16811973 ( 84) AACATGGC 1 chr2R:24278438-24278558 ( 90) AACATGGC 1 chr3L:18672384-18672504 ( 77) AACATGGC 1 chr2R:24844884-24845004 ( 59) AACATGGC 1 chr2R:16856397-16856517 ( 81) AACATGGC 1 chr2R:6741744-6741864 ( 46) AACATGGC 1 chrX:5560612-5560732 ( 46) AACATGGC 1 chr3L:1568550-1568670 ( 70) AACATGGC 1 chr3R:5659155-5659275 ( 47) AACATGGC 1 chr2R:20327194-20327314 ( 87) AACATGGC 1 chrX:8058516-8058636 ( 80) AATATGGC 1 chr3L:19910151-19910271 ( 54) AATATGGC 1 chr3R:23159455-23159575 ( 68) AATATGGC 1 chr3L:2636573-2636693 ( 105) AATATGGC 1 chr3L:9455925-9456045 ( 55) AATATGGC 1 chrX:11569785-11569905 ( 61) AATATGGC 1 chr2R:19456050-19456170 ( 110) AATATGGC 1 chr3R:18156766-18156886 ( 39) AATATGGC 1 chr2R:18133806-18133926 ( 44) AATATGGC 1 chr2R:4728931-4729051 ( 39) AATATGGC 1 chr2R:14152587-14152707 ( 70) AATATGGC 1 chr3R:28812008-28812128 ( 104) AATATGGC 1 chr2R:14870620-14870740 ( 36) AATATGGC 1 chr3R:23201160-23201280 ( 31) GAAATGGC 1 chr2R:9577934-9578054 ( 72) GAAATGGC 1 chrX:10854844-10854964 ( 46) GAAATGGC 1 chr2R:8068203-8068323 ( 66) GAAATGGC 1 chr3R:16702961-16703081 ( 66) ATAATGGC 1 chr3L:833364-833484 ( 32) AAAATGGT 1 chr4:205931-206051 ( 8) AAAATGGT 1 chr2L:17477770-17477890 ( 76) AAAATGGT 1 chr3L:8449851-8449971 ( 87) AAAATGGT 1 chr3R:16683025-16683145 ( 85) AAAATGGT 1 chrX:15450170-15450290 ( 13) TAAATGGC 1 chr2R:12884453-12884573 ( 79) GAGATGGC 1 chrX:15471975-15472095 ( 102) TAAATGGC 1 chr2R:6656314-6656434 ( 52) AAAATGCC 1 chr3R:7920397-7920517 ( 82) TAAATGGC 1 chrX:5317248-5317368 ( 104) GAGATGGC 1 chr3R:9258956-9259076 ( 89) AAAATGCC 1 chr3L:16786983-16787103 ( 38) AAAGTGGC 1 chr3L:8338946-8339066 ( 79) AAAATGTC 1 chr3R:29868881-29869001 ( 63) AAAATGTC 1 chr3L:12861645-12861765 ( 56) ATGATGGC 1 chr3R:16899896-16900016 ( 42) ATGATGGC 1 chr3L:7225460-7225580 ( 50) ATCATGGC 1 chr2R:12870177-12870297 ( 66) ATCATGGC 1 chr2L:22249588-22249708 ( 59) AAAATAGC 1 chrX:2010087-2010207 ( 59) AAAATAGC 1 chr3L:15140700-15140820 ( 83) AAGATGCC 1 chr2R:11853073-11853193 ( 68) ACAATGGC 1 chr3R:6992086-6992206 ( 108) ATTATGGC 1 chrX:5312171-5312291 ( 110) AAATTGGC 1 chr3R:12422774-12422894 ( 82) AAGATGTC 1 chr2L:10842353-10842473 ( 112) AAGGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.53415 E= 4.3e-120 176 -1360 -220 -355 179 -477 -1360 -256 101 -69 -14 -133 184 -1360 -378 -514 -1360 -1360 -1360 181 -408 -1360 215 -1360 -1360 -319 210 -355 -1360 212 -1360 -282 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 4.3e-120 0.927419 0.000000 0.048387 0.024194 0.943548 0.008065 0.000000 0.048387 0.548387 0.137097 0.201613 0.112903 0.975806 0.000000 0.016129 0.008065 0.000000 0.000000 0.000000 1.000000 0.016129 0.000000 0.983871 0.000000 0.000000 0.024194 0.951613 0.024194 0.000000 0.959677 0.000000 0.040323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAATGGC MEME-1 regular expression -------------------------------------------------------------------------------- AA[AG]ATGGC -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATTTT MEME-2 width = 8 sites = 134 llr = 1094 E-value = 2.6e-104 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:1:: pos.-specific C :aa::2:: probability G 9::::1:1 matrix T 1:::a699 bits 2.2 2.0 ** 1.7 **** 1.5 ***** Relative 1.3 ***** * Entropy 1.1 ***** ** (11.8 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6904109-6904229 46 1.95e-05 CATGATAGCA GCCATTTT GTTTAGTGTC chr2R:20587439-20587559 104 1.95e-05 AGGGTGATAC GCCATTTT CCAATTCCT chr2R:17683450-17683570 32 1.95e-05 CTGATCGACG GCCATTTT AAAAGTGACC chr3L:9854686-9854806 26 1.95e-05 GCGTGTATCG GCCATTTT GTTGTTGTTG chr2R:12884453-12884573 102 1.95e-05 ACAAGAAATT GCCATTTT GTTTTCAATG chrX:17852635-17852755 59 1.95e-05 GGTTGGAACT GCCATTTT CCAAAGCGAT chr3L:24976141-24976261 104 1.95e-05 TACCGCACTA GCCATTTT TATTACCAT chrX:5312171-5312291 72 1.95e-05 TCCATGGGCC GCCATTTT GTTTAGCGGC chr2L:10240052-10240172 80 1.95e-05 TTCGTGGGCT GCCATTTT AAAATTTGGA chr3R:17540415-17540535 64 1.95e-05 GAACCACGTC GCCATTTT CGTTTCGTTC chr2L:19453027-19453147 92 1.95e-05 TACCGGTATC GCCATTTT TAATTTGCAA chr2R:24278438-24278558 50 1.95e-05 CTAATGAGAC GCCATTTT GTTTGCGGCC chr2L:21105303-21105423 46 1.95e-05 CCATGCCGAC GCCATTTT TACGTCACAG chr2L:6477021-6477141 52 1.95e-05 AACTAATGGC GCCATTTT GTAAGCTAAG chr3R:18199624-18199744 21 1.95e-05 CTAAAAGCAC GCCATTTT CAGTGCTTTT chr3R:11590052-11590172 61 1.95e-05 AAAAATCAGA GCCATTTT GTTTGCGGCG chr2R:12870177-12870297 57 1.95e-05 TACACCTTTT GCCATTTT TATCATGGCG chr3L:14122233-14122353 52 1.95e-05 CTTTCGCGCC GCCATTTT TTGTGGCGCC chr2L:12436377-12436497 59 1.95e-05 TGTTTGTGCT GCCATTTT ACTGCCGCTT chr2L:19263671-19263791 23 1.95e-05 ATTTATGCTC GCCATTTT GCAGCGGACA chr4:787519-787639 61 1.95e-05 ATTACAATTC GCCATTTT TACCAATGAC chr3R:17088224-17088344 82 1.95e-05 CAGTGGCAAC GCCATTTT TGTTGACTCT chr2L:3539393-3539513 8 1.95e-05 AAGTGAC GCCATTTT GTGACTTTTA chr2L:1049465-1049585 64 1.95e-05 GGGACGGGAG GCCATTTT GAATGGCAAG chr2L:10842353-10842473 10 1.95e-05 GCATGTGAC GCCATTTT TATTTCTTAC chr3R:4645553-4645673 11 1.95e-05 AGACCTTGTC GCCATTTT AAATAAATTT chr3R:4403426-4403546 16 1.95e-05 GCCCGATTCA GCCATTTT CTAGGTGCCA chrX:19190117-19190237 87 1.95e-05 GAAACTTGCC GCCATTTT TCATTTAACG chr2R:8131576-8131696 88 1.95e-05 TCACAGGGCA GCCATTTT GGGCGAACTC chr3R:28600565-28600685 66 1.95e-05 CTTGCCGGTC GCCATTTT GAAAATTACG chr2L:6852473-6852593 77 1.95e-05 CCGCGGAGAC GCCATTTT TATTGGAGGA chr3R:16683025-16683145 49 1.95e-05 CTTTGTGGCG GCCATTTT GCAATGGCCG chr2R:13502887-13503007 40 1.95e-05 AAGACGCTTC GCCATTTT AAAAATCAAA chr3R:13011675-13011795 33 1.95e-05 TTCGTATTCC GCCATTTT GAAAGCTGCG chr3R:15972626-15972746 31 1.95e-05 GCCTGACAGC GCCATTTT TGTTTGCGGC chr3R:9258956-9259076 31 1.95e-05 CTGTAGTGAA GCCATTTT TATTTGCATC chr4:879129-879249 28 1.95e-05 TATCATTGTC GCCATTTT TGATTTGATG chr2L:12498697-12498817 68 1.95e-05 GGCTAACGCC GCCATTTT GTTGCTACTG chr3R:24870493-24870613 31 1.95e-05 TTTTGTGGGC GCCATTTT GAATGCGTGT chr3R:28811304-28811424 30 1.95e-05 TTCTCGAGTC GCCATTTT GAGAACAGTG chr3L:3148765-3148885 86 1.95e-05 TTTGTTGCGC GCCATTTT GTTTTTGGaa chr3R:11222740-11222860 36 1.95e-05 TCCATTTGTC GCCATTTT CTTTGCACCG chr2R:7962619-7962739 67 1.95e-05 GCGGGGCGCC GCCATTTT CTTTTTACCT chr3R:18385764-18385884 55 1.95e-05 TAAGTTGACC GCCATTTT GTACGTCAAA chr3R:11819051-11819171 52 1.95e-05 CACCGCGTAC GCCATTTT GATTTCTTGT chr3L:17846404-17846524 57 3.47e-05 GGCAAGTCTC GCCATCTT GTTGTGTCCG chr2R:20903608-20903728 35 3.47e-05 TGAGCCCACA GCCATCTT GCCGTCGAGC chr3L:15839596-15839716 54 3.47e-05 TCCTCTGGCC GCCATCTT GTTTTTCCAA chrX:546758-546878 77 3.47e-05 GTAAGCCGCA GCCATCTT GAAAAAGGAT chrX:796817-796937 78 3.47e-05 GTAAGGCGCA GCCATCTT GAAAAGGATC chr3L:7225460-7225580 64 3.47e-05 TGGCTACCTC GCCATCTT GCTTTCTCTC chr3R:17718524-17718644 87 3.47e-05 ACTCTGGGAC GCCATCTT TATTGCGGTA chr4:68881-69001 48 3.47e-05 ATCAAGAGCA GCCATCTT GAGATGTAAT chr3L:20771476-20771596 46 3.47e-05 CCGATGCGAC GCCATCTT GCTTTAGCAC chr3R:21376989-21377109 39 3.47e-05 CTCGTCGTCC GCCATCTT GGACGAAAAT chr2R:6085378-6085498 24 3.47e-05 AGATGTGGCC GCCATCTT GTCAGTTTGC chr3R:31061134-31061254 22 3.47e-05 ACAAATTTAC GCCATCTT GATATTCGCA chr3L:7339615-7339735 88 3.47e-05 TCTAGCCGCC GCCATCTT TTTTTATGTA chr2R:5663147-5663267 48 3.47e-05 CACACTTTCC GCCATCTT GAAATACATA chr2L:5055702-5055822 70 3.47e-05 GCCCATGACC GCCATCTT GGATTGGAAA chr3R:4821494-4821614 86 5.34e-05 GCTTTTGTCC GCCATATT TGAATTTAAA chr3L:19191004-19191124 62 5.34e-05 GCCTTGTGTG GCCATATT ATCGCCATGT chr2R:11469582-11469702 47 5.34e-05 AGCCGCGTCG GCCATATT GTCTACCCGT chr3L:15140700-15140820 64 5.34e-05 TCACAAGTCC GCCATATT GCTGGCAACC chr3L:16580274-16580394 41 5.34e-05 TTCTCAAGTG GCCATATT GAATGTCAAC chr3R:9637558-9637678 30 5.34e-05 GCTCGGTTCC GCCATATT TGTTTTTCTA chrX:10082413-10082533 51 5.34e-05 TGAAAACTTC GCCATATT TGGCTTGAAA chr2R:9195019-9195139 73 5.34e-05 TTTGTCATGC GCCATATT GAAATGGAGG chr2R:11149994-11150114 45 5.34e-05 TTTACTTGCA GCCATATT GGATAAGTAT chr2R:9116574-9116694 53 5.34e-05 ACTATCATCC GCCATATT TCTTCAGACC chr3R:18918675-18918795 62 5.34e-05 CTCGCGAGTC GCCATATT GAATTACTTA chr3R:7080349-7080469 30 5.34e-05 CTACACAATC GCCATATT GGTTCAGAGG chr3R:8240450-8240570 60 5.34e-05 CGAAGTCAAC GCCATATT GCTCTACTGA chr2R:17027803-17027923 76 5.34e-05 GCTTGCGGCA GCCATATT GTTTTGCCTT chr2R:11970606-11970726 54 5.34e-05 CGAAGGGGCA GCCATATT GAATTTGATG chr3L:14003587-14003707 43 5.34e-05 ACTGTGTGTC GCCATATT TGATTGCATA chr2R:12200750-12200870 32 6.86e-05 TACCTGATCA GCCATGTT GATGAAAAAG chr2L:5452231-5452351 47 6.86e-05 AGCTGGCGAC GCCATGTT GGTTTtcttc chr3R:16783447-16783567 46 6.86e-05 ACCATGGACC GCCATGTT GGCATCGATT chrX:15834800-15834920 35 6.86e-05 GAAAAAGTCA GCCATGTT GAGTTGCGCT chr2R:24186659-24186779 29 6.86e-05 CCTATCGAAC GCCATGTT GGATTTATCG chr3L:3466359-3466479 70 6.86e-05 CCGTTGTAGC GCCATGTT TGCGCTCCTT chr3R:26876549-26876669 46 6.86e-05 GATAGTTTCC GCCATGTT ATTAGCAGCA chr2R:7278626-7278746 30 8.38e-05 CGCAATTGCC GCCATTTG AAAAAAACGA chr2L:3540213-3540333 69 8.38e-05 AGAAAGTGTC GCCATTTG CCAAAATGGC chr3R:17682235-17682355 30 8.38e-05 AAACGCATCC GCCATTTG CAAGCCACTt chr2R:6741744-6741864 55 8.38e-05 CAACATGGCC GCCATTTG GATTTGAATA chr3L:5765390-5765510 34 9.90e-05 TTCCACATCT GCCATTGT ACTTGACTCT chr3L:5366110-5366230 42 9.90e-05 TGATGTATTC GCCATTGT GGTTAATGCT chr2L:114562-114682 75 9.90e-05 TATTCGCGCA GCCATTGT GATTAATTCT chrX:11137001-11137121 27 9.90e-05 GTTTCGCCTC GCCATTGT TTTTTGTCCC chr2R:5937595-5937715 69 9.90e-05 GTCGGCGGTG GCCATTGT TGTTGCTGCC chr2L:16743351-16743471 69 1.24e-04 TGACTGGCTC TCCATTTT GTTTTCCACG chr3R:12422774-12422894 71 1.24e-04 ACCGCACATC TCCATTTT GCAAAGATGT chr3R:16913645-16913765 68 1.24e-04 CCCTTGTCAT TCCATTTT CCATGGCTGC chr2R:23907273-23907393 13 1.24e-04 CGGTGAGGGG TCCATTTT CTTTCGAAAC chrX:9089452-9089572 63 1.24e-04 ATCGACTGTC TCCATTTT CTTTGTCGCT chr3L:2636573-2636693 55 1.43e-04 GCAGTGTAAA GCCATTTA CATACTTACA chrX:8696471-8696591 34 1.43e-04 CACTTGTGCA GCCATTTA TTTACCGCTT chr2R:12162930-12163050 69 1.43e-04 TCATGCGGCA GCCATTTA TAGAATAGTA chr2R:11853073-11853193 6 1.43e-04 CTTGC GCCATTTA CATATTTTTT chr3R:9628770-9628890 96 2.01e-04 ACGTGGCACC ACCATTTT GATAAACAAG chr2L:10970326-10970446 57 2.01e-04 TGCAGGAGAA ACCATTTT CTTTACCAGG chrX:15471975-15472095 60 2.01e-04 GGCGGGAGGA GCCATTTC GCTCCGCTTT chrX:6534133-6534253 80 2.01e-04 CAGCGGGTCC ACCATTTT TAATTTCTTT chr3R:7186947-7187067 78 2.01e-04 TTTGCCAGTC GCCATTAT CGATTTGTGG chr2R:11892770-11892890 14 2.01e-04 CAGCTATTTC GCCATTTC CAACCGACTC chr2R:11452721-11452841 48 2.01e-04 CTCTCTGGCC GCCATTAT TGCTTTCCAG chr2L:10230544-10230664 32 2.01e-04 TTTTTGCAGG ACCATTTT ATGAACGGTC chrX:22444370-22444490 30 2.37e-04 ATCATTCATC GCCATCTG AAAACACAAT chr2L:8415646-8415766 89 2.37e-04 GACCCGAGCG GACATTTT TTATTTGTGG chr3R:24320463-24320583 30 2.37e-04 GCAACCAGCC GACATTTT GGTTTCTCAC chr2R:21168567-21168687 98 2.37e-04 CTGTAAAGTT GACATTTT CAAGGCATTT chr3R:4811737-4811857 61 2.37e-04 CAATTCGGTC GACATTTT GTTTTCCGTC chr2L:6663864-6663984 34 2.68e-04 CAATCCATCC TCCATCTT CCACCATTCG chrX:5317248-5317368 18 2.68e-04 TTCTTTGACG TCCATCTT GCTTTGCATC chr3R:14901537-14901657 100 3.61e-04 CAACTTTGGG GCCTTTTT TTGGCGGGGG chr3R:17719430-17719550 53 3.61e-04 GCAAAATGGC GGCATTTT AAGTTCAATT chr2R:24787383-24787503 48 3.61e-04 TTTCAAATGT GCCTTTTT TTGTGTCATT chr3L:17644358-17644478 19 3.61e-04 ACGCCTTTTG GCCAATTT AAATGAAGGT chr3R:12627253-12627373 98 3.61e-04 GGACTTTCTT GGCATTTT CTTATTGGGT chr2L:2364401-2364521 56 3.90e-04 AAAATTCAGG GCCATCTA TCGCGCTCGC chr3R:10052813-10052933 56 3.90e-04 GTTTTGAACG GCCATAGT TAGAGATGTG chr3R:13646881-13647001 81 4.59e-04 TGGAAAAGCC GCCATCAT TCACACACCA chr3R:16899896-16900016 88 4.59e-04 TTTCAGCTCG GCCATCAT GGGGCTCCAT chr3L:19598482-19598602 41 4.75e-04 CTAAAATGGC GCCGTTTT CACTTTCCCA chr3R:9003946-9004066 44 6.10e-04 AACGCGTGTT GCCATATC AAGTTATAAA chr2R:11368077-11368197 39 6.10e-04 CTTTATATTC ACCATATT GGCGAGCAGA chrX:11569785-11569905 26 6.35e-04 TTGATGGAAT GCTATTTT TGCGTTTACA chr2R:21128222-21128342 78 7.33e-04 AACCCGATTT GCCAACTT TGTTTCAATT chr3R:7920397-7920517 10 7.33e-04 CGACTCGGC GCGATCTT CTGCTTTCTA chr3R:20948699-20948819 13 8.10e-04 CCGATAACTC TCCATTTG GTAGTCACGA chr3R:16847318-16847438 109 8.10e-04 ATCAGAGAGA TCCATTTG CCAT chr3R:18981276-18981396 91 1.18e-03 GAAACAAATG GCGATGTT CCCGCTCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6904109-6904229 2e-05 45_[+2]_67 chr2R:20587439-20587559 2e-05 103_[+2]_9 chr2R:17683450-17683570 2e-05 31_[+2]_81 chr3L:9854686-9854806 2e-05 25_[+2]_87 chr2R:12884453-12884573 2e-05 101_[+2]_11 chrX:17852635-17852755 2e-05 58_[+2]_54 chr3L:24976141-24976261 2e-05 103_[+2]_9 chrX:5312171-5312291 2e-05 71_[+2]_41 chr2L:10240052-10240172 2e-05 79_[+2]_33 chr3R:17540415-17540535 2e-05 63_[+2]_49 chr2L:19453027-19453147 2e-05 91_[+2]_21 chr2R:24278438-24278558 2e-05 49_[+2]_63 chr2L:21105303-21105423 2e-05 45_[+2]_67 chr2L:6477021-6477141 2e-05 51_[+2]_61 chr3R:18199624-18199744 2e-05 20_[+2]_92 chr3R:11590052-11590172 2e-05 60_[+2]_52 chr2R:12870177-12870297 2e-05 56_[+2]_56 chr3L:14122233-14122353 2e-05 51_[+2]_61 chr2L:12436377-12436497 2e-05 58_[+2]_54 chr2L:19263671-19263791 2e-05 22_[+2]_90 chr4:787519-787639 2e-05 60_[+2]_52 chr3R:17088224-17088344 2e-05 81_[+2]_31 chr2L:3539393-3539513 2e-05 7_[+2]_105 chr2L:1049465-1049585 2e-05 63_[+2]_49 chr2L:10842353-10842473 2e-05 9_[+2]_103 chr3R:4645553-4645673 2e-05 10_[+2]_102 chr3R:4403426-4403546 2e-05 15_[+2]_97 chrX:19190117-19190237 2e-05 86_[+2]_26 chr2R:8131576-8131696 2e-05 87_[+2]_25 chr3R:28600565-28600685 2e-05 65_[+2]_47 chr2L:6852473-6852593 2e-05 76_[+2]_36 chr3R:16683025-16683145 2e-05 48_[+2]_64 chr2R:13502887-13503007 2e-05 39_[+2]_73 chr3R:13011675-13011795 2e-05 32_[+2]_80 chr3R:15972626-15972746 2e-05 30_[+2]_82 chr3R:9258956-9259076 2e-05 30_[+2]_82 chr4:879129-879249 2e-05 27_[+2]_85 chr2L:12498697-12498817 2e-05 67_[+2]_45 chr3R:24870493-24870613 2e-05 30_[+2]_82 chr3R:28811304-28811424 2e-05 29_[+2]_83 chr3L:3148765-3148885 2e-05 85_[+2]_27 chr3R:11222740-11222860 2e-05 35_[+2]_77 chr2R:7962619-7962739 2e-05 66_[+2]_46 chr3R:18385764-18385884 2e-05 54_[+2]_58 chr3R:11819051-11819171 2e-05 51_[+2]_61 chr3L:17846404-17846524 3.5e-05 56_[+2]_56 chr2R:20903608-20903728 3.5e-05 34_[+2]_78 chr3L:15839596-15839716 3.5e-05 53_[+2]_59 chrX:546758-546878 3.5e-05 76_[+2]_36 chrX:796817-796937 3.5e-05 77_[+2]_35 chr3L:7225460-7225580 3.5e-05 63_[+2]_49 chr3R:17718524-17718644 3.5e-05 86_[+2]_26 chr4:68881-69001 3.5e-05 47_[+2]_65 chr3L:20771476-20771596 3.5e-05 45_[+2]_67 chr3R:21376989-21377109 3.5e-05 38_[+2]_74 chr2R:6085378-6085498 3.5e-05 23_[+2]_89 chr3R:31061134-31061254 3.5e-05 21_[+2]_91 chr3L:7339615-7339735 3.5e-05 87_[+2]_25 chr2R:5663147-5663267 3.5e-05 47_[+2]_65 chr2L:5055702-5055822 3.5e-05 69_[+2]_43 chr3R:4821494-4821614 5.3e-05 85_[+2]_27 chr3L:19191004-19191124 5.3e-05 61_[+2]_51 chr2R:11469582-11469702 5.3e-05 46_[+2]_66 chr3L:15140700-15140820 5.3e-05 63_[+2]_49 chr3L:16580274-16580394 5.3e-05 40_[+2]_72 chr3R:9637558-9637678 5.3e-05 29_[+2]_83 chrX:10082413-10082533 5.3e-05 50_[+2]_62 chr2R:9195019-9195139 5.3e-05 72_[+2]_40 chr2R:11149994-11150114 5.3e-05 44_[+2]_68 chr2R:9116574-9116694 5.3e-05 52_[+2]_60 chr3R:18918675-18918795 5.3e-05 61_[+2]_51 chr3R:7080349-7080469 5.3e-05 29_[+2]_83 chr3R:8240450-8240570 5.3e-05 59_[+2]_53 chr2R:17027803-17027923 5.3e-05 75_[+2]_37 chr2R:11970606-11970726 5.3e-05 53_[+2]_59 chr3L:14003587-14003707 5.3e-05 42_[+2]_70 chr2R:12200750-12200870 6.9e-05 31_[+2]_81 chr2L:5452231-5452351 6.9e-05 46_[+2]_66 chr3R:16783447-16783567 6.9e-05 45_[+2]_67 chrX:15834800-15834920 6.9e-05 34_[+2]_78 chr2R:24186659-24186779 6.9e-05 28_[+2]_84 chr3L:3466359-3466479 6.9e-05 69_[+2]_43 chr3R:26876549-26876669 6.9e-05 45_[+2]_67 chr2R:7278626-7278746 8.4e-05 29_[+2]_83 chr2L:3540213-3540333 8.4e-05 68_[+2]_44 chr3R:17682235-17682355 8.4e-05 29_[+2]_83 chr2R:6741744-6741864 8.4e-05 54_[+2]_58 chr3L:5765390-5765510 9.9e-05 33_[+2]_79 chr3L:5366110-5366230 9.9e-05 41_[+2]_71 chr2L:114562-114682 9.9e-05 74_[+2]_38 chrX:11137001-11137121 9.9e-05 26_[+2]_86 chr2R:5937595-5937715 9.9e-05 68_[+2]_44 chr2L:16743351-16743471 0.00012 68_[+2]_44 chr3R:12422774-12422894 0.00012 70_[+2]_42 chr3R:16913645-16913765 0.00012 67_[+2]_45 chr2R:23907273-23907393 0.00012 12_[+2]_100 chrX:9089452-9089572 0.00012 62_[+2]_50 chr3L:2636573-2636693 0.00014 54_[+2]_58 chrX:8696471-8696591 0.00014 33_[+2]_79 chr2R:12162930-12163050 0.00014 68_[+2]_44 chr2R:11853073-11853193 0.00014 5_[+2]_107 chr3R:9628770-9628890 0.0002 95_[+2]_17 chr2L:10970326-10970446 0.0002 56_[+2]_56 chrX:15471975-15472095 0.0002 59_[+2]_53 chrX:6534133-6534253 0.0002 79_[+2]_33 chr3R:7186947-7187067 0.0002 77_[+2]_35 chr2R:11892770-11892890 0.0002 13_[+2]_99 chr2R:11452721-11452841 0.0002 47_[+2]_65 chr2L:10230544-10230664 0.0002 31_[+2]_81 chrX:22444370-22444490 0.00024 29_[+2]_83 chr2L:8415646-8415766 0.00024 88_[+2]_24 chr3R:24320463-24320583 0.00024 29_[+2]_83 chr2R:21168567-21168687 0.00024 97_[+2]_15 chr3R:4811737-4811857 0.00024 60_[+2]_52 chr2L:6663864-6663984 0.00027 33_[+2]_79 chrX:5317248-5317368 0.00027 17_[+2]_95 chr3R:14901537-14901657 0.00036 99_[+2]_13 chr3R:17719430-17719550 0.00036 52_[+2]_60 chr2R:24787383-24787503 0.00036 47_[+2]_65 chr3L:17644358-17644478 0.00036 18_[+2]_94 chr3R:12627253-12627373 0.00036 97_[+2]_15 chr2L:2364401-2364521 0.00039 55_[+2]_57 chr3R:10052813-10052933 0.00039 55_[+2]_57 chr3R:13646881-13647001 0.00046 80_[+2]_32 chr3R:16899896-16900016 0.00046 87_[+2]_25 chr3L:19598482-19598602 0.00047 40_[+2]_72 chr3R:9003946-9004066 0.00061 43_[+2]_69 chr2R:11368077-11368197 0.00061 38_[+2]_74 chrX:11569785-11569905 0.00064 25_[+2]_87 chr2R:21128222-21128342 0.00073 77_[+2]_35 chr3R:7920397-7920517 0.00073 9_[+2]_103 chr3R:20948699-20948819 0.00081 12_[+2]_100 chr3R:16847318-16847438 0.00081 108_[+2]_4 chr3R:18981276-18981396 0.0012 90_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATTTT width=8 seqs=134 chr3L:6904109-6904229 ( 46) GCCATTTT 1 chr2R:20587439-20587559 ( 104) GCCATTTT 1 chr2R:17683450-17683570 ( 32) GCCATTTT 1 chr3L:9854686-9854806 ( 26) GCCATTTT 1 chr2R:12884453-12884573 ( 102) GCCATTTT 1 chrX:17852635-17852755 ( 59) GCCATTTT 1 chr3L:24976141-24976261 ( 104) GCCATTTT 1 chrX:5312171-5312291 ( 72) GCCATTTT 1 chr2L:10240052-10240172 ( 80) GCCATTTT 1 chr3R:17540415-17540535 ( 64) GCCATTTT 1 chr2L:19453027-19453147 ( 92) GCCATTTT 1 chr2R:24278438-24278558 ( 50) GCCATTTT 1 chr2L:21105303-21105423 ( 46) GCCATTTT 1 chr2L:6477021-6477141 ( 52) GCCATTTT 1 chr3R:18199624-18199744 ( 21) GCCATTTT 1 chr3R:11590052-11590172 ( 61) GCCATTTT 1 chr2R:12870177-12870297 ( 57) GCCATTTT 1 chr3L:14122233-14122353 ( 52) GCCATTTT 1 chr2L:12436377-12436497 ( 59) GCCATTTT 1 chr2L:19263671-19263791 ( 23) GCCATTTT 1 chr4:787519-787639 ( 61) GCCATTTT 1 chr3R:17088224-17088344 ( 82) GCCATTTT 1 chr2L:3539393-3539513 ( 8) GCCATTTT 1 chr2L:1049465-1049585 ( 64) GCCATTTT 1 chr2L:10842353-10842473 ( 10) GCCATTTT 1 chr3R:4645553-4645673 ( 11) GCCATTTT 1 chr3R:4403426-4403546 ( 16) GCCATTTT 1 chrX:19190117-19190237 ( 87) GCCATTTT 1 chr2R:8131576-8131696 ( 88) GCCATTTT 1 chr3R:28600565-28600685 ( 66) GCCATTTT 1 chr2L:6852473-6852593 ( 77) GCCATTTT 1 chr3R:16683025-16683145 ( 49) GCCATTTT 1 chr2R:13502887-13503007 ( 40) GCCATTTT 1 chr3R:13011675-13011795 ( 33) GCCATTTT 1 chr3R:15972626-15972746 ( 31) GCCATTTT 1 chr3R:9258956-9259076 ( 31) GCCATTTT 1 chr4:879129-879249 ( 28) GCCATTTT 1 chr2L:12498697-12498817 ( 68) GCCATTTT 1 chr3R:24870493-24870613 ( 31) GCCATTTT 1 chr3R:28811304-28811424 ( 30) GCCATTTT 1 chr3L:3148765-3148885 ( 86) GCCATTTT 1 chr3R:11222740-11222860 ( 36) GCCATTTT 1 chr2R:7962619-7962739 ( 67) GCCATTTT 1 chr3R:18385764-18385884 ( 55) GCCATTTT 1 chr3R:11819051-11819171 ( 52) GCCATTTT 1 chr3L:17846404-17846524 ( 57) GCCATCTT 1 chr2R:20903608-20903728 ( 35) GCCATCTT 1 chr3L:15839596-15839716 ( 54) GCCATCTT 1 chrX:546758-546878 ( 77) GCCATCTT 1 chrX:796817-796937 ( 78) GCCATCTT 1 chr3L:7225460-7225580 ( 64) GCCATCTT 1 chr3R:17718524-17718644 ( 87) GCCATCTT 1 chr4:68881-69001 ( 48) GCCATCTT 1 chr3L:20771476-20771596 ( 46) GCCATCTT 1 chr3R:21376989-21377109 ( 39) GCCATCTT 1 chr2R:6085378-6085498 ( 24) GCCATCTT 1 chr3R:31061134-31061254 ( 22) GCCATCTT 1 chr3L:7339615-7339735 ( 88) GCCATCTT 1 chr2R:5663147-5663267 ( 48) GCCATCTT 1 chr2L:5055702-5055822 ( 70) GCCATCTT 1 chr3R:4821494-4821614 ( 86) GCCATATT 1 chr3L:19191004-19191124 ( 62) GCCATATT 1 chr2R:11469582-11469702 ( 47) GCCATATT 1 chr3L:15140700-15140820 ( 64) GCCATATT 1 chr3L:16580274-16580394 ( 41) GCCATATT 1 chr3R:9637558-9637678 ( 30) GCCATATT 1 chrX:10082413-10082533 ( 51) GCCATATT 1 chr2R:9195019-9195139 ( 73) GCCATATT 1 chr2R:11149994-11150114 ( 45) GCCATATT 1 chr2R:9116574-9116694 ( 53) GCCATATT 1 chr3R:18918675-18918795 ( 62) GCCATATT 1 chr3R:7080349-7080469 ( 30) GCCATATT 1 chr3R:8240450-8240570 ( 60) GCCATATT 1 chr2R:17027803-17027923 ( 76) GCCATATT 1 chr2R:11970606-11970726 ( 54) GCCATATT 1 chr3L:14003587-14003707 ( 43) GCCATATT 1 chr2R:12200750-12200870 ( 32) GCCATGTT 1 chr2L:5452231-5452351 ( 47) GCCATGTT 1 chr3R:16783447-16783567 ( 46) GCCATGTT 1 chrX:15834800-15834920 ( 35) GCCATGTT 1 chr2R:24186659-24186779 ( 29) GCCATGTT 1 chr3L:3466359-3466479 ( 70) GCCATGTT 1 chr3R:26876549-26876669 ( 46) GCCATGTT 1 chr2R:7278626-7278746 ( 30) GCCATTTG 1 chr2L:3540213-3540333 ( 69) GCCATTTG 1 chr3R:17682235-17682355 ( 30) GCCATTTG 1 chr2R:6741744-6741864 ( 55) GCCATTTG 1 chr3L:5765390-5765510 ( 34) GCCATTGT 1 chr3L:5366110-5366230 ( 42) GCCATTGT 1 chr2L:114562-114682 ( 75) GCCATTGT 1 chrX:11137001-11137121 ( 27) GCCATTGT 1 chr2R:5937595-5937715 ( 69) GCCATTGT 1 chr2L:16743351-16743471 ( 69) TCCATTTT 1 chr3R:12422774-12422894 ( 71) TCCATTTT 1 chr3R:16913645-16913765 ( 68) TCCATTTT 1 chr2R:23907273-23907393 ( 13) TCCATTTT 1 chrX:9089452-9089572 ( 63) TCCATTTT 1 chr3L:2636573-2636693 ( 55) GCCATTTA 1 chrX:8696471-8696591 ( 34) GCCATTTA 1 chr2R:12162930-12163050 ( 69) GCCATTTA 1 chr2R:11853073-11853193 ( 6) GCCATTTA 1 chr3R:9628770-9628890 ( 96) ACCATTTT 1 chr2L:10970326-10970446 ( 57) ACCATTTT 1 chrX:15471975-15472095 ( 60) GCCATTTC 1 chrX:6534133-6534253 ( 80) ACCATTTT 1 chr3R:7186947-7187067 ( 78) GCCATTAT 1 chr2R:11892770-11892890 ( 14) GCCATTTC 1 chr2R:11452721-11452841 ( 48) GCCATTAT 1 chr2L:10230544-10230664 ( 32) ACCATTTT 1 chrX:22444370-22444490 ( 30) GCCATCTG 1 chr2L:8415646-8415766 ( 89) GACATTTT 1 chr3R:24320463-24320583 ( 30) GACATTTT 1 chr2R:21168567-21168687 ( 98) GACATTTT 1 chr3R:4811737-4811857 ( 61) GACATTTT 1 chr2L:6663864-6663984 ( 34) TCCATCTT 1 chrX:5317248-5317368 ( 18) TCCATCTT 1 chr3R:14901537-14901657 ( 100) GCCTTTTT 1 chr3R:17719430-17719550 ( 53) GGCATTTT 1 chr2R:24787383-24787503 ( 48) GCCTTTTT 1 chr3L:17644358-17644478 ( 19) GCCAATTT 1 chr3R:12627253-12627373 ( 98) GGCATTTT 1 chr2L:2364401-2364521 ( 56) GCCATCTA 1 chr3R:10052813-10052933 ( 56) GCCATAGT 1 chr3R:13646881-13647001 ( 81) GCCATCAT 1 chr3R:16899896-16900016 ( 88) GCCATCAT 1 chr3L:19598482-19598602 ( 41) GCCGTTTT 1 chr3R:9003946-9004066 ( 44) GCCATATC 1 chr2R:11368077-11368197 ( 39) ACCATATT 1 chrX:11569785-11569905 ( 26) GCTATTTT 1 chr2R:21128222-21128342 ( 78) GCCAACTT 1 chr3R:7920397-7920517 ( 10) GCGATCTT 1 chr3R:20948699-20948819 ( 13) TCCATTTG 1 chr3R:16847318-16847438 ( 109) TCCATTTG 1 chr3R:18981276-18981396 ( 91) GCGATGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.76589 E= 2.6e-104 -287 -1371 201 -208 -319 211 -389 -1371 -1371 215 -389 -525 184 -1371 -489 -425 -419 -1371 -1371 179 -95 -36 -189 114 -319 -1371 -231 170 -287 -330 -209 164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 2.6e-104 0.037313 0.000000 0.895522 0.067164 0.029851 0.955224 0.014925 0.000000 0.000000 0.977612 0.014925 0.007463 0.977612 0.000000 0.007463 0.014925 0.014925 0.000000 0.000000 0.985075 0.141791 0.171642 0.059701 0.626866 0.029851 0.000000 0.044776 0.925373 0.037313 0.022388 0.052239 0.888060 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 regular expression -------------------------------------------------------------------------------- GCCATTTT -------------------------------------------------------------------------------- Time 13.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-3 width = 8 sites = 29 llr = 279 E-value = 4.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:9 pos.-specific C :::a:::: probability G ::::a::: matrix T 8:a:::a1 bits 2.2 ** 2.0 * *** 1.7 * **** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20948699-20948819 40 2.31e-05 ACTTCTAAAA TATCGATA CGTTGGAATT chr2R:20587439-20587559 69 2.31e-05 AACCATCATA TATCGATA GTCCAGGTAT chrX:17852635-17852755 80 2.31e-05 AAGCGATAAG TATCGATA GATTCTAAAA chr3L:833364-833484 92 2.31e-05 TCGATTTTCC TATCGATA ATAGGCCCGG chr2L:16743351-16743471 16 2.31e-05 TGGTTTAAGA TATCGATA AGATTCATTT chr3R:29868881-29869001 74 2.31e-05 AAATGTCGGT TATCGATA ACAGGTTGAA chr3R:7920397-7920517 31 2.31e-05 CTTTCTAAAA TATCGATA GTTTGTGGCA chr2R:6741744-6741864 75 2.31e-05 TTTGAATAGC TATCGATA GGTGCCGTCG chr3R:9637558-9637678 73 2.31e-05 TCTTTGCGCA TATCGATA GTTGCTTACC chr3R:20816129-20816249 82 2.31e-05 CATCAGTTTT TATCGATA GCCGCGGTGG chrX:9089452-9089572 39 2.31e-05 AGCCGCGCGT TATCGATA ACAGCCATCG chr3R:9003946-9004066 71 2.31e-05 AAACTTGTGA TATCGATA TTAAATGGAG chr2L:114562-114682 41 2.31e-05 GCAATCGATA TATCGATA TGTCACAATC chr3R:4645553-4645673 88 2.31e-05 AAGCATTCGT TATCGATA CATATCGAGG chr2R:20327194-20327314 74 2.31e-05 TGCCCCGGCA TATCGATA CTACCAACAT chr3L:20809581-20809701 66 2.31e-05 TTTTCACGCC TATCGATA GATCCACCTG chr3R:26876549-26876669 32 2.31e-05 TGTAACCATC TATCGATA GTTTCCGCCA chr3R:28812008-28812128 81 2.31e-05 GGGACATGTA TATCGATA CCACGTTGCA chr3L:9864520-9864640 60 4.52e-05 CATTGTTGAC AATCGATA TAGCCAAGTC chr4:787519-787639 103 4.52e-05 GGTGGCAGAA AATCGATA AGTATTTAAC chr2R:17592700-17592820 41 4.52e-05 AGCACTAAAA AATCGATA GTATAAGAGA chr2R:11149994-11150114 88 4.52e-05 TGTCATCGGT AATCGATA GTTGTGCGCA chr2R:12162930-12163050 104 4.52e-05 CACATCACTC AATCGATA AGACATCTA chr2R:6085378-6085498 95 4.52e-05 CATTTTAAAA AATCGATA AAAGAGCGTA chr2R:23851062-23851182 63 6.94e-05 ACCTATCGGA TATCGATT GATGGTCGAT chrX:22444370-22444490 4 6.94e-05 GCA TATCGATT ACATTCCCAT chrX:2603852-2603972 52 6.94e-05 ATGGCGTTGT TATCGATT CGTTGCAGAT chr3R:17718524-17718644 62 6.94e-05 TTGGCATCGA TATCGATT TCTCGCTACT chr3R:4821494-4821614 27 8.73e-05 AATTAACGAC TACCGATA TCTTATGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20948699-20948819 2.3e-05 39_[+3]_73 chr2R:20587439-20587559 2.3e-05 68_[+3]_44 chrX:17852635-17852755 2.3e-05 79_[+3]_33 chr3L:833364-833484 2.3e-05 91_[+3]_21 chr2L:16743351-16743471 2.3e-05 15_[+3]_97 chr3R:29868881-29869001 2.3e-05 73_[+3]_39 chr3R:7920397-7920517 2.3e-05 30_[+3]_82 chr2R:6741744-6741864 2.3e-05 74_[+3]_38 chr3R:9637558-9637678 2.3e-05 72_[+3]_40 chr3R:20816129-20816249 2.3e-05 81_[+3]_31 chrX:9089452-9089572 2.3e-05 38_[+3]_74 chr3R:9003946-9004066 2.3e-05 70_[+3]_42 chr2L:114562-114682 2.3e-05 40_[+3]_72 chr3R:4645553-4645673 2.3e-05 87_[+3]_25 chr2R:20327194-20327314 2.3e-05 73_[+3]_39 chr3L:20809581-20809701 2.3e-05 65_[+3]_47 chr3R:26876549-26876669 2.3e-05 31_[+3]_81 chr3R:28812008-28812128 2.3e-05 80_[+3]_32 chr3L:9864520-9864640 4.5e-05 59_[+3]_53 chr4:787519-787639 4.5e-05 102_[+3]_10 chr2R:17592700-17592820 4.5e-05 40_[+3]_72 chr2R:11149994-11150114 4.5e-05 87_[+3]_25 chr2R:12162930-12163050 4.5e-05 103_[+3]_9 chr2R:6085378-6085498 4.5e-05 94_[+3]_18 chr2R:23851062-23851182 6.9e-05 62_[+3]_50 chrX:22444370-22444490 6.9e-05 3_[+3]_109 chrX:2603852-2603972 6.9e-05 51_[+3]_61 chr3R:17718524-17718644 6.9e-05 61_[+3]_51 chr3R:4821494-4821614 8.7e-05 26_[+3]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=29 chr3R:20948699-20948819 ( 40) TATCGATA 1 chr2R:20587439-20587559 ( 69) TATCGATA 1 chrX:17852635-17852755 ( 80) TATCGATA 1 chr3L:833364-833484 ( 92) TATCGATA 1 chr2L:16743351-16743471 ( 16) TATCGATA 1 chr3R:29868881-29869001 ( 74) TATCGATA 1 chr3R:7920397-7920517 ( 31) TATCGATA 1 chr2R:6741744-6741864 ( 75) TATCGATA 1 chr3R:9637558-9637678 ( 73) TATCGATA 1 chr3R:20816129-20816249 ( 82) TATCGATA 1 chrX:9089452-9089572 ( 39) TATCGATA 1 chr3R:9003946-9004066 ( 71) TATCGATA 1 chr2L:114562-114682 ( 41) TATCGATA 1 chr3R:4645553-4645673 ( 88) TATCGATA 1 chr2R:20327194-20327314 ( 74) TATCGATA 1 chr3L:20809581-20809701 ( 66) TATCGATA 1 chr3R:26876549-26876669 ( 32) TATCGATA 1 chr3R:28812008-28812128 ( 81) TATCGATA 1 chr3L:9864520-9864640 ( 60) AATCGATA 1 chr4:787519-787639 ( 103) AATCGATA 1 chr2R:17592700-17592820 ( 41) AATCGATA 1 chr2R:11149994-11150114 ( 88) AATCGATA 1 chr2R:12162930-12163050 ( 104) AATCGATA 1 chr2R:6085378-6085498 ( 95) AATCGATA 1 chr2R:23851062-23851182 ( 63) TATCGATT 1 chrX:22444370-22444490 ( 4) TATCGATT 1 chrX:2603852-2603972 ( 52) TATCGATT 1 chr3R:17718524-17718644 ( 62) TATCGATT 1 chr3R:4821494-4821614 ( 27) TACCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 4.9e-009 -40 -1150 -1150 148 187 -1150 -1150 -1150 -1150 -267 -1150 176 -1150 218 -1150 -1150 -1150 -1150 217 -1150 187 -1150 -1150 -1150 -1150 -1150 -1150 181 166 -1150 -1150 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 4.9e-009 0.206897 0.000000 0.000000 0.793103 1.000000 0.000000 0.000000 0.000000 0.000000 0.034483 0.000000 0.965517 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.862069 0.000000 0.000000 0.137931 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 19.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCGCCA MEME-4 width = 8 sites = 19 llr = 183 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1::2a pos.-specific C 1:a8:a7: probability G 7a::a:1: matrix T 2::1:::: bits 2.2 ** ** 2.0 ** ** * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ***** * Entropy 1.1 ****** * (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCGCCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15450170-15450290 86 7.13e-06 CCATCCCTGG GGCCGCCA TTCCGCAATT chr2R:6656314-6656434 43 7.13e-06 TCGTTGTAAT GGCCGCCA AAAAATGCCG chr3R:10856753-10856873 51 7.13e-06 ATAACGGAAT GGCCGCCA AAGACAAAAA chr3R:16811853-16811973 15 7.13e-06 CCCCCGCAAT GGCCGCCA ATGGCTAAGC chr2L:12707808-12707928 82 7.13e-06 TCAACTTTCC GGCCGCCA TTAGAACGCT chr2R:12140259-12140379 2 7.13e-06 C GGCCGCCA GTGTGCACAT chr2R:21128222-21128342 57 1.59e-05 ACAATCACAC GGCCGCAA ACAAACCCGA chr3R:11590052-11590172 92 1.59e-05 CAGAGCTACG GGCCGCAA ATAAACTGGA chr2R:12162930-12163050 10 1.59e-05 CCTTTCTTT GGCCGCAA TTCACAATTT chrX:8696471-8696591 64 2.51e-05 TGATTTAATA TGCCGCCA AAACAGAAAC chr2R:5937595-5937715 83 2.51e-05 TTGTTGTTGC TGCCGCCA TCAGATAGAT chr2L:12498697-12498817 87 2.51e-05 TTGCTACTGT TGCCGCCA TGCTGGCAAC chr3R:18156766-18156886 47 3.22e-05 TCAATATGGC GGCCGCGA CAAAAACGAG chr3R:16683025-16683145 62 3.22e-05 ATTTTGCAAT GGCCGCGA CTATTATGGC chr3R:23159455-23159575 41 4.14e-05 GATGGTGCAA GGCTGCCA TTCGTTTATC chr3R:14901537-14901657 84 4.14e-05 TGCGCCGAGG GGCTGCCA ACTTTGGGGC chr3R:25249734-25249854 33 4.85e-05 AATCTTCAGG CGCCGCCA TTGAAAGCAC chr3R:16702961-16703081 77 6.86e-05 TAATGGCGGT TGCCGCAA GACAAATAAC chr2R:17457864-17457984 87 6.86e-05 aaacccaaaa ggcagcca gcaaacgcaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15450170-15450290 7.1e-06 85_[+4]_27 chr2R:6656314-6656434 7.1e-06 42_[+4]_70 chr3R:10856753-10856873 7.1e-06 50_[+4]_62 chr3R:16811853-16811973 7.1e-06 14_[+4]_98 chr2L:12707808-12707928 7.1e-06 81_[+4]_31 chr2R:12140259-12140379 7.1e-06 1_[+4]_111 chr2R:21128222-21128342 1.6e-05 56_[+4]_56 chr3R:11590052-11590172 1.6e-05 91_[+4]_21 chr2R:12162930-12163050 1.6e-05 9_[+4]_103 chrX:8696471-8696591 2.5e-05 63_[+4]_49 chr2R:5937595-5937715 2.5e-05 82_[+4]_30 chr2L:12498697-12498817 2.5e-05 86_[+4]_26 chr3R:18156766-18156886 3.2e-05 46_[+4]_66 chr3R:16683025-16683145 3.2e-05 61_[+4]_51 chr3R:23159455-23159575 4.1e-05 40_[+4]_72 chr3R:14901537-14901657 4.1e-05 83_[+4]_29 chr3R:25249734-25249854 4.9e-05 32_[+4]_80 chr3R:16702961-16703081 6.9e-05 76_[+4]_36 chr2R:17457864-17457984 6.9e-05 86_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCGCCA width=8 seqs=19 chrX:15450170-15450290 ( 86) GGCCGCCA 1 chr2R:6656314-6656434 ( 43) GGCCGCCA 1 chr3R:10856753-10856873 ( 51) GGCCGCCA 1 chr3R:16811853-16811973 ( 15) GGCCGCCA 1 chr2L:12707808-12707928 ( 82) GGCCGCCA 1 chr2R:12140259-12140379 ( 2) GGCCGCCA 1 chr2R:21128222-21128342 ( 57) GGCCGCAA 1 chr3R:11590052-11590172 ( 92) GGCCGCAA 1 chr2R:12162930-12163050 ( 10) GGCCGCAA 1 chrX:8696471-8696591 ( 64) TGCCGCCA 1 chr2R:5937595-5937715 ( 83) TGCCGCCA 1 chr2L:12498697-12498817 ( 87) TGCCGCCA 1 chr3R:18156766-18156886 ( 47) GGCCGCGA 1 chr3R:16683025-16683145 ( 62) GGCCGCGA 1 chr3R:23159455-23159575 ( 41) GGCTGCCA 1 chr3R:14901537-14901657 ( 84) GGCTGCCA 1 chr3R:25249734-25249854 ( 33) CGCCGCCA 1 chr3R:16702961-16703081 ( 77) TGCCGCAA 1 chr2R:17457864-17457984 ( 87) GGCAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 1.2e+002 -1089 -206 173 -43 -1089 -1089 217 -1089 -1089 218 -1089 -1089 -237 193 -1089 -143 -1089 -1089 217 -1089 -1089 218 -1089 -1089 -38 163 -107 -1089 187 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.2e+002 0.000000 0.052632 0.736842 0.210526 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.052632 0.842105 0.000000 0.105263 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.210526 0.684211 0.105263 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCGCCA MEME-4 regular expression -------------------------------------------------------------------------------- [GT]GCCGC[CA]A -------------------------------------------------------------------------------- Time 24.79 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAGTR MEME-5 width = 8 sites = 15 llr = 145 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaaaa::3 pos.-specific C :::::::: probability G :::::a17 matrix T ::::::9: bits 2.2 * 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:19910151-19910271 77 2.13e-05 GGAGAGCGAC AAAAAGTG AGAGAACTAG chr2R:17683450-17683570 2 2.13e-05 A AAAAAGTG TATACAACTT chr2R:7917072-7917192 108 2.13e-05 AACAAAAGAG AAAAAGTG TGTGT chr2R:8922683-8922803 29 2.13e-05 CAACTTTTTT AAAAAGTG GCTTCGGTTC chr3L:1568550-1568670 12 2.13e-05 CTGGCAACAC AAAAAGTG AAATGCTGTT chr3R:21376989-21377109 97 2.13e-05 GCTGCAGGCG AAAAAGTG CAATGCGCGT chr3R:13011675-13011795 100 2.13e-05 AAAACTGCCC AAAAAGTG CATAAAATTT chr3R:7080349-7080469 49 2.13e-05 GTTCAGAGGA AAAAAGTG TTGAATAACG chr2L:6000111-6000231 111 2.13e-05 TGCGTGATAA AAAAAGTG CA chr3R:14308836-14308956 77 4.75e-05 CATTTTATAC AAAAAGTA ATTGAATAAA chr3L:14122233-14122353 33 4.75e-05 CACTGTGGTG AAAAAGTA GCTTTCGCGC chr3R:4811737-4811857 30 4.75e-05 AATCGGTGGG AAAAAGTA ATAGAGGAAA chr2R:5937595-5937715 108 4.75e-05 GATAGGTGCA AAAAAGTA GCAAC chr3R:10856753-10856873 64 6.41e-05 CGCCAAAGAC AAAAAGGG ACGCCAACTG chr2R:12200750-12200870 44 8.45e-05 CATGTTGATG AAAAAGGA AAGAACGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:19910151-19910271 2.1e-05 76_[+5]_36 chr2R:17683450-17683570 2.1e-05 1_[+5]_111 chr2R:7917072-7917192 2.1e-05 107_[+5]_5 chr2R:8922683-8922803 2.1e-05 28_[+5]_84 chr3L:1568550-1568670 2.1e-05 11_[+5]_101 chr3R:21376989-21377109 2.1e-05 96_[+5]_16 chr3R:13011675-13011795 2.1e-05 99_[+5]_13 chr3R:7080349-7080469 2.1e-05 48_[+5]_64 chr2L:6000111-6000231 2.1e-05 110_[+5]_2 chr3R:14308836-14308956 4.7e-05 76_[+5]_36 chr3L:14122233-14122353 4.7e-05 32_[+5]_80 chr3R:4811737-4811857 4.7e-05 29_[+5]_83 chr2R:5937595-5937715 4.7e-05 107_[+5]_5 chr3R:10856753-10856873 6.4e-05 63_[+5]_49 chr2R:12200750-12200870 8.4e-05 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAGTR width=8 seqs=15 chr3L:19910151-19910271 ( 77) AAAAAGTG 1 chr2R:17683450-17683570 ( 2) AAAAAGTG 1 chr2R:7917072-7917192 ( 108) AAAAAGTG 1 chr2R:8922683-8922803 ( 29) AAAAAGTG 1 chr3L:1568550-1568670 ( 12) AAAAAGTG 1 chr3R:21376989-21377109 ( 97) AAAAAGTG 1 chr3R:13011675-13011795 ( 100) AAAAAGTG 1 chr3R:7080349-7080469 ( 49) AAAAAGTG 1 chr2L:6000111-6000231 ( 111) AAAAAGTG 1 chr3R:14308836-14308956 ( 77) AAAAAGTA 1 chr3L:14122233-14122353 ( 33) AAAAAGTA 1 chr3R:4811737-4811857 ( 30) AAAAAGTA 1 chr2R:5937595-5937715 ( 108) AAAAAGTA 1 chr3R:10856753-10856873 ( 64) AAAAAGGG 1 chr2R:12200750-12200870 ( 44) AAAAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.94656 E= 9.8e+003 187 -1055 -1055 -1055 187 -1055 -1055 -1055 187 -1055 -1055 -1055 187 -1055 -1055 -1055 187 -1055 -1055 -1055 -1055 -1055 217 -1055 -1055 -1055 -73 161 29 -1055 159 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 9.8e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.866667 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAGTR MEME-5 regular expression -------------------------------------------------------------------------------- AAAAAGT[GA] -------------------------------------------------------------------------------- Time 30.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10230544-10230664 5.18e-04 56_[+1(1.72e-05)]_13_[+1(1.72e-05)]_\ 35 chr3R:11819051-11819171 1.13e-01 51_[+2(1.95e-05)]_61 chr2R:16179209-16179329 2.81e-02 50_[+1(3.13e-05)]_62 chr2L:5055702-5055822 8.99e-03 69_[+2(3.47e-05)]_43 chr2R:11368077-11368197 2.51e-01 120 chr2R:14870620-14870740 1.90e-03 35_[+1(6.32e-05)]_77 chr3R:18385764-18385884 7.46e-03 54_[+2(1.95e-05)]_58 chr2R:7962619-7962739 8.90e-03 66_[+2(1.95e-05)]_46 chr3L:14003587-14003707 9.28e-02 42_[+2(5.34e-05)]_70 chr2R:12140259-12140379 1.08e-03 1_[+4(7.13e-06)]_27_[+1(3.13e-05)]_\ 76 chr2R:5663147-5663267 7.94e-03 47_[+2(3.47e-05)]_65 chr2R:11970606-11970726 8.10e-03 53_[+2(5.34e-05)]_59 chr3R:12627253-12627373 4.42e-02 120 chr2R:18135388-18135508 2.62e-03 59_[+1(1.72e-05)]_53 chr3R:11222740-11222860 3.43e-04 35_[+2(1.95e-05)]_25_[+1(1.72e-05)]_\ 44 chr3L:3148765-3148885 2.93e-02 85_[+2(1.95e-05)]_27 chr2R:11452721-11452841 9.53e-03 43_[+4(7.13e-06)]_69 chr2L:3711677-3711797 2.91e-03 25_[+1(1.72e-05)]_87 chr3L:7339615-7339735 5.76e-04 32_[+2(8.38e-05)]_47_[+2(3.47e-05)]_\ 25 chr2L:6000111-6000231 2.01e-03 42_[+1(1.72e-05)]_60_[+5(2.13e-05)]_\ 2 chr2R:17027803-17027923 2.24e-03 75_[+2(5.34e-05)]_37 chr3L:20241408-20241528 3.59e-03 87_[+1(1.72e-05)]_25 chr2R:24186866-24186986 4.58e-01 120 chr3R:28812008-28812128 1.67e-03 57_[+3(2.31e-05)]_15_[+3(2.31e-05)]_\ 15_[+1(6.32e-05)]_9 chr2R:8068203-8068323 1.08e-01 65_[+1(7.72e-05)]_47 chr2R:13249784-13249904 9.38e-02 18_[+1(4.52e-05)]_28_[+1(1.72e-05)]_\ 4_[+1(4.52e-05)]_28_[+1(1.72e-05)]_10 chr3R:28811304-28811424 5.92e-02 29_[+2(1.95e-05)]_83 chrX:9149269-9149389 1.52e-02 79_[+1(1.72e-05)]_33 chr3R:24870493-24870613 4.70e-02 30_[+2(1.95e-05)]_82 chr3R:21359692-21359812 9.91e-03 67_[+1(1.72e-05)]_45 chr3R:8240450-8240570 2.25e-01 59_[+2(5.34e-05)]_53 chr2R:14152587-14152707 5.10e-02 69_[+1(6.32e-05)]_43 chr2L:12498697-12498817 1.91e-03 34_[+2(5.34e-05)]_4_[+2(1.95e-05)]_\ 13_[+2(1.95e-05)]_11_[+4(2.51e-05)]_26 chr2R:8914508-8914628 6.60e-02 76_[+1(3.13e-05)]_36 chr3L:21634410-21634530 4.58e-02 39_[+1(1.72e-05)]_73 chr4:879129-879249 9.57e-04 27_[+2(1.95e-05)]_85 chr3R:9258956-9259076 2.75e-03 30_[+2(1.95e-05)]_82 chr2L:22247784-22247904 1.06e-01 44_[+1(3.13e-05)]_68 chr3R:7080349-7080469 4.32e-03 29_[+2(5.34e-05)]_11_[+5(2.13e-05)]_\ 64 chr3R:15972626-15972746 6.83e-04 30_[+2(1.95e-05)]_82 chr3R:18918675-18918795 1.95e-01 61_[+2(5.34e-05)]_51 chr3R:5659867-5659987 9.59e-03 120 chr2R:11853073-11853193 4.90e-03 120 chr2R:11892770-11892890 1.77e-03 47_[+1(1.72e-05)]_65 chr3R:11949627-11949747 2.51e-03 71_[+1(1.72e-05)]_41 chr3L:16595041-16595161 2.79e-01 120 chr3R:31061134-31061254 1.04e-01 21_[+2(3.47e-05)]_91 chr3R:13011675-13011795 7.94e-04 32_[+2(1.95e-05)]_59_[+5(2.13e-05)]_\ 13 chr2R:13502887-13503007 3.15e-02 39_[+2(1.95e-05)]_73 chrX:10854844-10854964 8.76e-03 45_[+1(7.72e-05)]_67 chr2R:6085378-6085498 8.53e-06 19_[+4(7.13e-06)]_67_[+3(4.52e-05)]_\ 18 chr2R:12162930-12163050 1.48e-04 9_[+4(1.59e-05)]_47_[+4(6.86e-05)]_\ 31_[+3(4.52e-05)]_9 chr3R:16683025-16683145 6.91e-05 48_[+2(1.95e-05)]_5_[+4(3.22e-05)]_\ 51 chr2R:5937595-5937715 1.31e-06 38_[+1(1.72e-05)]_22_[+2(9.90e-05)]_\ 6_[+4(2.51e-05)]_17_[+5(4.75e-05)]_5 chr3R:16830147-16830267 2.40e-02 10_[+1(3.13e-05)]_102 chr3R:26876549-26876669 2.34e-03 31_[+3(2.31e-05)]_6_[+2(6.86e-05)]_\ 67 chr3R:7186947-7187067 1.23e-02 82_[+3(6.94e-05)]_30 chr2L:6852473-6852593 5.56e-02 76_[+2(1.95e-05)]_36 chr3R:21376989-21377109 1.29e-04 38_[+2(3.47e-05)]_50_[+5(2.13e-05)]_\ 16 chr3L:3466359-3466479 1.05e-01 69_[+2(6.86e-05)]_43 chrX:6534133-6534253 7.75e-02 120 chrX:5317248-5317368 4.55e-02 120 chr3L:20809581-20809701 1.10e-04 65_[+3(2.31e-05)]_23_[+1(1.72e-05)]_\ 16 chr2R:9116574-9116694 5.70e-03 52_[+2(5.34e-05)]_38_[+5(6.41e-05)]_\ 14 chrX:11137001-11137121 4.91e-02 26_[+2(9.90e-05)]_86 chr3R:28600565-28600685 5.03e-03 65_[+2(1.95e-05)]_47 chr2R:19266063-19266183 6.66e-02 35_[+1(3.13e-05)]_77 chr2L:21221467-21221587 3.06e-02 81_[+1(1.72e-05)]_31 chr3L:17644358-17644478 3.66e-03 75_[+1(3.13e-05)]_37 chr2R:8131576-8131696 1.61e-03 87_[+2(1.95e-05)]_25 chr3R:7892419-7892539 7.26e-02 57_[+1(3.13e-05)]_55 chr3R:16899896-16900016 4.92e-02 120 chr2R:20327194-20327314 1.76e-04 73_[+3(2.31e-05)]_5_[+1(4.52e-05)]_\ 26 chrX:8696471-8696591 6.42e-05 63_[+4(2.51e-05)]_10_[+1(1.72e-05)]_\ 31 chr2L:12707808-12707928 1.02e-02 81_[+4(7.13e-06)]_31 chr3R:4811737-4811857 2.58e-02 29_[+5(4.75e-05)]_83 chrX:19190117-19190237 3.98e-04 86_[+2(1.95e-05)]_26 chr2R:24402349-24402469 1.09e-02 68_[+1(1.72e-05)]_44 chr2R:12916414-12916534 3.38e-02 55_[+1(1.72e-05)]_57 chr3R:5659155-5659275 7.40e-02 46_[+1(4.52e-05)]_66 chr3R:4403426-4403546 1.67e-02 15_[+2(1.95e-05)]_38_[+2(5.34e-05)]_\ 51 chr3L:20771476-20771596 7.29e-03 45_[+2(3.47e-05)]_67 chr2R:24787383-24787503 1.17e-02 120 chr3R:17719430-17719550 3.86e-03 44_[+1(1.72e-05)]_68 chr2L:6663864-6663984 3.39e-01 120 chr3R:4645553-4645673 1.43e-04 10_[+2(1.95e-05)]_69_[+3(2.31e-05)]_\ 25 chr2L:5542107-5542227 5.10e-01 120 chr2R:11149994-11150114 8.18e-04 44_[+2(5.34e-05)]_35_[+3(4.52e-05)]_\ 25 chr3L:1568550-1568670 1.62e-03 11_[+5(2.13e-05)]_50_[+1(4.52e-05)]_\ 43 chr3R:13660034-13660154 4.91e-01 120 chr3R:14655565-14655685 4.67e-03 100_[+1(3.13e-05)]_12 chr2R:4728931-4729051 1.21e-02 38_[+1(6.32e-05)]_74 chrX:12273081-12273201 6.41e-03 23_[+1(1.72e-05)]_53_[+1(7.72e-05)]_\ 28 chr3R:30388002-30388122 1.95e-01 120 chr3L:224743-224863 1.75e-02 83_[+1(1.72e-05)]_29 chrX:1289102-1289222 1.05e-02 55_[+1(3.13e-05)]_57 chrX:2010087-2010207 4.38e-02 120 chr2L:10842353-10842473 8.14e-04 9_[+2(1.95e-05)]_103 chr3R:13646881-13647001 2.38e-02 120 chrX:5594022-5594142 3.30e-02 98_[+1(3.13e-05)]_14 chr2R:18133806-18133926 3.19e-02 43_[+1(6.32e-05)]_69 chr2R:17592700-17592820 7.92e-05 40_[+3(4.52e-05)]_56_[+1(1.72e-05)]_\ 8 chr2L:114562-114682 3.89e-04 32_[+3(4.52e-05)]_[+3(2.31e-05)]_26_\ [+2(9.90e-05)]_38 chr3R:9003946-9004066 9.45e-03 70_[+3(2.31e-05)]_42 chr2R:21168567-21168687 8.38e-04 51_[+1(1.72e-05)]_61 chr2L:18934746-18934866 2.88e-03 42_[+1(3.13e-05)]_61_[+1(1.72e-05)]_\ 1 chr4:68881-69001 1.14e-02 47_[+2(3.47e-05)]_65 chr3R:24320463-24320583 2.22e-01 120 chr2L:1049465-1049585 5.91e-04 63_[+2(1.95e-05)]_27_[+5(6.41e-05)]_\ 5_[+5(6.41e-05)]_1 chr3L:9411197-9411317 3.18e-02 75_[+1(1.72e-05)]_37 chr2L:3539393-3539513 3.45e-02 7_[+2(1.95e-05)]_34_[+2(1.95e-05)]_\ 63 chr3L:1502528-1502648 3.82e-01 120 chr3R:17088224-17088344 3.68e-02 81_[+2(1.95e-05)]_31 chr4:787519-787639 7.18e-04 60_[+2(1.95e-05)]_34_[+3(4.52e-05)]_\ 10 chr3R:9510059-9510179 5.92e-03 36_[+1(1.72e-05)]_76 chrX:9089452-9089572 1.70e-02 38_[+3(2.31e-05)]_74 chr2R:17457864-17457984 1.80e-03 52_[+1(1.72e-05)]_26_[+4(6.86e-05)]_\ 26 chr2R:24186659-24186779 8.15e-02 28_[+2(6.86e-05)]_84 chr2L:21681593-21681713 2.63e-02 40_[+1(1.72e-05)]_72 chr2R:9195019-9195139 1.60e-01 72_[+2(5.34e-05)]_40 chrX:10082413-10082533 4.64e-02 50_[+2(5.34e-05)]_62 chr3R:10052813-10052933 5.35e-02 120 chr3R:16948706-16948826 1.82e-01 120 chr2L:19263671-19263791 6.11e-02 22_[+2(1.95e-05)]_90 chr3R:17718524-17718644 2.14e-04 61_[+3(6.94e-05)]_17_[+2(3.47e-05)]_\ 26 chr3R:18156766-18156886 2.94e-03 38_[+1(6.32e-05)]_[+4(3.22e-05)]_66 chr2L:2364401-2364521 9.78e-02 120 chr2L:12436377-12436497 7.37e-03 58_[+2(1.95e-05)]_54 chrX:4636262-4636382 1.87e-02 70_[+1(1.72e-05)]_42 chr3R:20816129-20816249 3.48e-02 81_[+3(2.31e-05)]_31 chrX:2603852-2603972 6.84e-04 38_[+1(1.72e-05)]_5_[+3(6.94e-05)]_\ 61 chr3L:5366110-5366230 3.20e-02 41_[+2(9.90e-05)]_71 chrX:5560612-5560732 7.28e-02 45_[+1(4.52e-05)]_67 chr3L:14122233-14122353 6.74e-05 32_[+5(4.75e-05)]_11_[+2(1.95e-05)]_\ 61 chr2R:23907273-23907393 1.23e-01 120 chrX:15834800-15834920 5.69e-03 34_[+2(6.86e-05)]_78 chr2L:17557491-17557611 2.84e-02 50_[+1(3.13e-05)]_62 chr2R:12870177-12870297 1.58e-02 56_[+2(1.95e-05)]_56 chr3R:9637558-9637678 2.17e-03 29_[+2(5.34e-05)]_35_[+3(2.31e-05)]_\ 40 chr3R:16783447-16783567 8.37e-03 45_[+2(6.86e-05)]_67 chr3R:11590052-11590172 9.49e-06 16_[+1(1.72e-05)]_36_[+2(1.95e-05)]_\ 23_[+4(1.59e-05)]_21 chr3R:18199624-18199744 8.98e-02 20_[+2(1.95e-05)]_92 chr2L:594959-595079 4.21e-02 78_[+1(3.13e-05)]_34 chr3L:5765390-5765510 5.42e-03 33_[+2(9.90e-05)]_19_[+1(1.72e-05)]_\ 52 chr2L:6477021-6477141 2.39e-04 51_[+2(1.95e-05)]_61 chr2R:6741744-6741864 9.38e-07 45_[+1(4.52e-05)]_1_[+2(8.38e-05)]_\ 12_[+3(2.31e-05)]_38 chr3R:8820159-8820279 1.14e-01 66_[+1(1.72e-05)]_46 chr2R:8922683-8922803 1.70e-03 28_[+5(2.13e-05)]_22_[+1(3.13e-05)]_\ 54 chr2L:21105303-21105423 4.61e-03 45_[+2(1.95e-05)]_67 chr2R:16856397-16856517 3.87e-02 80_[+1(4.52e-05)]_32 chr3R:16913645-16913765 5.69e-02 120 chr3R:17682235-17682355 3.36e-01 29_[+2(8.38e-05)]_83 chr2R:24844884-24845004 1.98e-01 58_[+1(4.52e-05)]_54 chr3L:18672384-18672504 1.10e-01 76_[+1(4.52e-05)]_36 chr3L:8449851-8449971 1.87e-02 120 chr2L:17477770-17477890 1.55e-01 120 chr2R:22415644-22415764 2.63e-01 120 chr2R:24278438-24278558 4.44e-04 49_[+2(1.95e-05)]_32_[+1(4.52e-05)]_\ 23 chr2L:3540213-3540333 1.74e-04 9_[+1(6.32e-05)]_51_[+2(8.38e-05)]_\ 2_[+1(1.72e-05)]_34 chr2R:22641343-22641463 8.85e-03 72_[+1(3.13e-05)]_16_[+1(7.72e-05)]_\ 16 chr2L:19453027-19453147 1.59e-03 91_[+2(1.95e-05)]_21 chr3L:12861645-12861765 9.57e-02 120 chr3R:7920397-7920517 1.28e-03 30_[+3(2.31e-05)]_82 chr3R:16811853-16811973 2.51e-03 14_[+4(7.13e-06)]_61_[+1(4.52e-05)]_\ 29 chr3R:17540415-17540535 3.39e-02 63_[+2(1.95e-05)]_49 chr3R:14308067-14308187 7.97e-03 39_[+1(1.72e-05)]_73 chr3R:12422774-12422894 7.35e-03 120 chr3R:18981276-18981396 4.14e-02 120 chr4:205931-206051 1.04e-01 120 chr2R:19456050-19456170 1.30e-02 109_[+1(6.32e-05)]_3 chr2L:10240052-10240172 4.92e-03 79_[+2(1.95e-05)]_33 chr2L:5452231-5452351 1.58e-02 46_[+2(6.86e-05)]_66 chr3L:16580274-16580394 9.52e-02 40_[+2(5.34e-05)]_72 chrX:5312171-5312291 2.74e-04 47_[+2(1.95e-05)]_12_[+4(7.13e-06)]_\ 45 chr2R:12200750-12200870 4.05e-04 31_[+2(6.86e-05)]_4_[+5(8.45e-05)]_\ 69 chr2R:21128222-21128342 6.53e-03 56_[+4(1.59e-05)]_56 chr3L:15140700-15140820 4.20e-04 63_[+2(5.34e-05)]_49 chr3R:29868881-29869001 7.00e-03 73_[+3(2.31e-05)]_39 chr3L:7225460-7225580 3.22e-03 63_[+2(3.47e-05)]_49 chr3R:10856753-10856873 1.24e-03 50_[+4(7.13e-06)]_5_[+5(6.41e-05)]_\ 49 chrX:796817-796937 6.11e-03 77_[+2(3.47e-05)]_35 chrX:546758-546878 1.60e-03 76_[+2(3.47e-05)]_1_[+5(8.45e-05)]_\ 27 chr2L:16743351-16743471 9.12e-03 15_[+3(2.31e-05)]_15_[+3(2.31e-05)]_\ 74 chrX:17397181-17397301 2.96e-02 57_[+1(4.52e-05)]_55 chr3L:15839596-15839716 6.18e-04 49_[+4(7.13e-06)]_63 chr2R:6656314-6656434 1.18e-03 42_[+4(7.13e-06)]_70 chrX:15471975-15472095 4.47e-02 120 chr2L:22168629-22168749 3.14e-03 75_[+1(1.72e-05)]_37 chr3L:24976141-24976261 2.05e-02 103_[+2(1.95e-05)]_9 chr2R:20903608-20903728 1.35e-01 34_[+2(3.47e-05)]_78 chr2R:7917072-7917192 3.93e-03 88_[+1(1.72e-05)]_11_[+5(2.13e-05)]_\ 5 chr3R:6992086-6992206 2.33e-01 120 chrX:11569785-11569905 5.67e-02 60_[+1(6.32e-05)]_52 chr3L:6955285-6955405 9.36e-02 120 chr2L:8415646-8415766 3.82e-01 120 chr3L:8338946-8339066 7.90e-02 120 chr3R:16882598-16882718 3.01e-03 51_[+1(3.13e-05)]_61 chr3L:833364-833484 8.51e-05 6_[+5(4.75e-05)]_48_[+3(2.31e-05)]_\ 21_[+3(2.31e-05)]_21 chrX:22444370-22444490 2.58e-02 3_[+3(6.94e-05)]_109 chr3L:6752267-6752387 1.41e-02 43_[+1(1.72e-05)]_69 chr3R:25249734-25249854 2.07e-02 32_[+4(4.85e-05)]_80 chr3L:19598482-19598602 2.48e-03 32_[+1(1.72e-05)]_80 chr3L:7510851-7510971 3.97e-01 120 chr2R:10540719-10540839 3.75e-04 47_[+1(3.13e-05)]_65 chr3L:6807633-6807753 8.63e-01 120 chrX:17852635-17852755 6.38e-04 58_[+2(1.95e-05)]_13_[+3(2.31e-05)]_\ 33 chr3R:14659511-14659631 3.32e-02 46_[+1(4.52e-05)]_66 chrX:17768199-17768319 4.00e-02 44_[+1(1.72e-05)]_68 chr2R:7278626-7278746 8.56e-04 25_[+4(2.51e-05)]_87 chr2R:23851062-23851182 5.54e-04 43_[+1(4.52e-05)]_11_[+3(6.94e-05)]_\ 50 chr3R:14901537-14901657 6.27e-05 50_[+1(1.72e-05)]_25_[+4(4.14e-05)]_\ 29 chr2R:12884453-12884573 5.77e-03 101_[+2(1.95e-05)]_11 chr3L:9854686-9854806 1.62e-01 25_[+2(1.95e-05)]_87 chr2R:24099095-24099215 4.69e-01 120 chr3L:9455925-9456045 3.27e-01 54_[+1(6.32e-05)]_58 chr3R:16847318-16847438 5.93e-03 36_[+1(1.72e-05)]_76 chr3R:24817327-24817447 4.57e-01 120 chrX:15450170-15450290 8.69e-03 85_[+4(7.13e-06)]_27 chr3L:3223514-3223634 6.74e-03 64_[+1(1.72e-05)]_48 chr3R:14625902-14626022 1.29e-01 77_[+1(4.52e-05)]_35 chr2L:5525937-5526057 1.22e-01 120 chr3R:6008279-6008399 1.50e-02 47_[+1(1.72e-05)]_65 chr2R:17683450-17683570 1.43e-03 1_[+5(2.13e-05)]_22_[+2(1.95e-05)]_\ 81 chr3R:23157936-23158056 1.70e-01 120 chr2R:11469582-11469702 1.87e-01 46_[+2(5.34e-05)]_66 chr3R:29130952-29131072 2.58e-01 120 chr3R:25591612-25591732 4.98e-02 120 chr2L:14410382-14410502 1.77e-01 120 chr3L:2636573-2636693 9.35e-04 104_[+1(6.32e-05)]_8 chr3R:12985981-12986101 1.68e-03 39_[+3(8.73e-05)]_12_[+3(8.73e-05)]_\ 3_[+1(1.72e-05)]_42 chr3R:16702961-16703081 6.13e-03 65_[+1(9.52e-05)]_3_[+4(6.86e-05)]_\ 36 chr3L:9864520-9864640 3.48e-02 59_[+3(4.52e-05)]_53 chr2L:22249588-22249708 2.20e-01 120 chr3L:16786983-16787103 6.91e-02 120 chr3L:15174988-15175108 5.13e-01 120 chr2L:10970326-10970446 1.37e-01 120 chr3R:23159455-23159575 1.92e-03 40_[+4(4.14e-05)]_19_[+1(6.32e-05)]_\ 45 chr2R:20587439-20587559 4.43e-04 68_[+3(2.31e-05)]_27_[+2(1.95e-05)]_\ 9 chr3R:9628770-9628890 1.55e-01 120 chr3L:17846404-17846524 2.36e-02 56_[+2(3.47e-05)]_56 chr2R:9577934-9578054 5.22e-02 71_[+1(7.72e-05)]_41 chr3L:6904109-6904229 2.31e-02 45_[+2(1.95e-05)]_67 chr3L:19191004-19191124 1.03e-03 61_[+2(5.34e-05)]_3_[+2(6.86e-05)]_\ 2_[+1(1.72e-05)]_30 chr3R:14308836-14308956 6.63e-02 76_[+5(4.75e-05)]_36 chr3R:4821494-4821614 7.00e-04 26_[+3(8.73e-05)]_51_[+2(5.34e-05)]_\ 27 chr3R:23201160-23201280 1.48e-01 30_[+1(7.72e-05)]_82 chr3R:20948699-20948819 1.22e-03 39_[+3(2.31e-05)]_56_[+1(4.52e-05)]_\ 9 chrX:10899355-10899475 1.63e-03 97_[+1(3.13e-05)]_15 chr3L:19910151-19910271 4.26e-03 53_[+1(6.32e-05)]_15_[+5(2.13e-05)]_\ 36 chrX:8058516-8058636 9.98e-02 79_[+1(6.32e-05)]_33 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************