******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pdm3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:8358044-8358164 1.0000 120 chr3R:31443616-31443736 1.0000 120 chrX:1466286-1466406 1.0000 120 chrX:2358341-2358461 1.0000 120 chrX:9468420-9468540 1.0000 120 chr3L:21080605-21080725 1.0000 120 chr3R:8234021-8234141 1.0000 120 chr3R:21733093-21733213 1.0000 120 chr3R:16368460-16368580 1.0000 120 chr2R:16812860-16812980 1.0000 120 chr2L:14624053-14624173 1.0000 120 chrX:13238677-13238797 1.0000 120 chr2L:18341078-18341198 1.0000 120 chr2R:13478527-13478647 1.0000 120 chr3L:2800441-2800561 1.0000 120 chr3L:2795715-2795835 1.0000 120 chr3L:14534794-14534914 1.0000 120 chr3L:2152892-2153012 1.0000 120 chr2R:17099743-17099863 1.0000 120 chr2R:11083866-11083986 1.0000 120 chr3L:767028-767148 1.0000 120 chr2L:16498218-16498338 1.0000 120 chr3R:13806843-13806963 1.0000 120 chr3L:21738562-21738682 1.0000 120 chr2R:13473953-13474073 1.0000 120 chrX:14897754-14897874 1.0000 120 chr2R:17077089-17077209 1.0000 120 chr3R:14390618-14390738 1.0000 120 chrX:2788725-2788845 1.0000 120 chr3R:29758514-29758634 1.0000 120 chr3R:14775528-14775648 1.0000 120 chr3L:10968764-10968884 1.0000 120 chr2R:21550571-21550691 1.0000 120 chr3L:19315013-19315133 1.0000 120 chr3L:6446688-6446808 1.0000 120 chr3R:24996622-24996742 1.0000 120 chrX:3296235-3296355 1.0000 120 chr2R:12646888-12647008 1.0000 120 chr2R:7912133-7912253 1.0000 120 chr2L:3881300-3881420 1.0000 120 chrX:3055898-3056018 1.0000 120 chrX:8255024-8255144 1.0000 120 chr2L:7611712-7611832 1.0000 120 chrX:8891094-8891214 1.0000 120 chr2R:9557590-9557710 1.0000 120 chrX:17518421-17518541 1.0000 120 chr2L:2944667-2944787 1.0000 120 chr3R:20283354-20283474 1.0000 120 chr2R:23761507-23761627 1.0000 120 chr3R:9346756-9346876 1.0000 120 chrX:15543618-15543738 1.0000 120 chr2R:8345439-8345559 1.0000 120 chrX:5926841-5926961 1.0000 120 chr3L:19011313-19011433 1.0000 120 chr3R:12442708-12442828 1.0000 120 chr2L:11399576-11399696 1.0000 120 chrX:2455467-2455587 1.0000 120 chrX:21073797-21073917 1.0000 120 chrX:740003-740123 1.0000 120 chr2R:11324030-11324150 1.0000 120 chr2L:13056146-13056266 1.0000 120 chr2L:19325546-19325666 1.0000 120 chr2L:9447930-9448050 1.0000 120 chr3R:31482252-31482372 1.0000 120 chr3L:6997044-6997164 1.0000 120 chr2R:14082368-14082488 1.0000 120 chr3L:6483008-6483128 1.0000 120 chr2L:1574147-1574267 1.0000 120 chrX:7177266-7177386 1.0000 120 chr2L:15392477-15392597 1.0000 120 chr3L:787748-787868 1.0000 120 chrX:10581629-10581749 1.0000 120 chr2R:9691816-9691936 1.0000 120 chr3R:29004992-29005112 1.0000 120 chr2L:4069739-4069859 1.0000 120 chr3L:4624034-4624154 1.0000 120 chr3R:31688865-31688985 1.0000 120 chr3R:25461824-25461944 1.0000 120 chr2L:171945-172065 1.0000 120 chr3L:6269168-6269288 1.0000 120 chr3L:20952227-20952347 1.0000 120 chr2L:18344466-18344586 1.0000 120 chr2L:17449852-17449972 1.0000 120 chr3L:14451667-14451787 1.0000 120 chrX:17298081-17298201 1.0000 120 chr2R:10772064-10772184 1.0000 120 chr3L:4407883-4408003 1.0000 120 chr3R:8847323-8847443 1.0000 120 chr3L:21738806-21738926 1.0000 120 chr3L:4731847-4731967 1.0000 120 chr2L:18628255-18628375 1.0000 120 chrX:13972550-13972670 1.0000 120 chr3L:2802197-2802317 1.0000 120 chr2L:19252514-19252634 1.0000 120 chr3R:14684061-14684181 1.0000 120 chr3R:18481140-18481260 1.0000 120 chr3L:1374631-1374751 1.0000 120 chr2L:4071679-4071799 1.0000 120 chr2R:14081690-14081810 1.0000 120 chr3R:14290175-14290295 1.0000 120 chr2L:249625-249745 1.0000 120 chr3L:15220445-15220565 1.0000 120 chrX:3289510-3289630 1.0000 120 chr3R:14498228-14498348 1.0000 120 chr3R:8968964-8969084 1.0000 120 chr2L:8919784-8919904 1.0000 120 chr3R:18485417-18485537 1.0000 120 chr3R:13808013-13808133 1.0000 120 chr2L:18005608-18005728 1.0000 120 chrX:1826211-1826331 1.0000 120 chr3R:22184197-22184317 1.0000 120 chr3R:25490416-25490536 1.0000 120 chrX:3380306-3380426 1.0000 120 chr2L:4055508-4055628 1.0000 120 chr3R:27186316-27186436 1.0000 120 chr3R:13845984-13846104 1.0000 120 chr3L:20552027-20552147 1.0000 120 chr3L:11656380-11656500 1.0000 120 chr2L:11968654-11968774 1.0000 120 chr2L:11386507-11386627 1.0000 120 chr2R:20195240-20195360 1.0000 120 chrX:7544047-7544167 1.0000 120 chr2L:18372219-18372339 1.0000 120 chr3R:15566478-15566598 1.0000 120 chrX:4970048-4970168 1.0000 120 chr3L:5365280-5365400 1.0000 120 chr3R:30814984-30815104 1.0000 120 chr3R:16119608-16119728 1.0000 120 chr3R:13934736-13934856 1.0000 120 chr3R:30805242-30805362 1.0000 120 chrX:3060255-3060375 1.0000 120 chr3L:1464570-1464690 1.0000 120 chr3L:4619893-4620013 1.0000 120 chr3L:6285555-6285675 1.0000 120 chr3R:30134812-30134932 1.0000 120 chrX:10105816-10105936 1.0000 120 chr3L:10913357-10913477 1.0000 120 chr3R:30076214-30076334 1.0000 120 chr2R:14782984-14783104 1.0000 120 chr2R:21569755-21569875 1.0000 120 chrX:10104627-10104747 1.0000 120 chr3L:16762347-16762467 1.0000 120 chrX:7892627-7892747 1.0000 120 chr3R:29538582-29538702 1.0000 120 chr3R:5042595-5042715 1.0000 120 chr3R:11806919-11807039 1.0000 120 chrX:5786643-5786763 1.0000 120 chr2R:22570702-22570822 1.0000 120 chr2R:8650573-8650693 1.0000 120 chrX:17726688-17726808 1.0000 120 chrX:5897197-5897317 1.0000 120 chrX:17229906-17230026 1.0000 120 chrX:9460761-9460881 1.0000 120 chr3R:30284079-30284199 1.0000 120 chr3L:4836470-4836590 1.0000 120 chr3L:12090419-12090539 1.0000 120 chr2R:16812274-16812394 1.0000 120 chr2R:9282831-9282951 1.0000 120 chr3L:16482267-16482387 1.0000 120 chr2L:18523135-18523255 1.0000 120 chr3L:11365842-11365962 1.0000 120 chr3R:27167474-27167594 1.0000 120 chrX:9047139-9047259 1.0000 120 chr2L:675055-675175 1.0000 120 chr3L:10794021-10794141 1.0000 120 chrX:19145211-19145331 1.0000 120 chr2L:18146789-18146909 1.0000 120 chrX:4197619-4197739 1.0000 120 chr3L:4707982-4708102 1.0000 120 chrX:19162396-19162516 1.0000 120 chr3R:9913584-9913704 1.0000 120 chr3L:1829664-1829784 1.0000 120 chr2L:4056926-4057046 1.0000 120 chr2L:7949942-7950062 1.0000 120 chrX:2107910-2108030 1.0000 120 chr3R:20286161-20286281 1.0000 120 chr2R:20319530-20319650 1.0000 120 chr2R:12535351-12535471 1.0000 120 chr3R:29211145-29211265 1.0000 120 chrX:16318962-16319082 1.0000 120 chrX:12015143-12015263 1.0000 120 chr3L:4545826-4545946 1.0000 120 chr2L:609622-609742 1.0000 120 chr2R:8240840-8240960 1.0000 120 chrX:2365532-2365652 1.0000 120 chr2L:838129-838249 1.0000 120 chrX:13376694-13376814 1.0000 120 chr2L:14995135-14995255 1.0000 120 chrX:16966662-16966782 1.0000 120 chr2L:16687926-16688046 1.0000 120 chr2L:5290039-5290159 1.0000 120 chr3R:22628061-22628181 1.0000 120 chr3R:31700356-31700476 1.0000 120 chr3R:6353021-6353141 1.0000 120 chr2L:3341734-3341854 1.0000 120 chr2R:19985136-19985256 1.0000 120 chrX:19964360-19964480 1.0000 120 chr2L:4348696-4348816 1.0000 120 chr2L:1427941-1428061 1.0000 120 chr2R:21569036-21569156 1.0000 120 chr3R:8922988-8923108 1.0000 120 chrX:1083254-1083374 1.0000 120 chr2R:20110872-20110992 1.0000 120 chr3R:9934996-9935116 1.0000 120 chr2R:21476617-21476737 1.0000 120 chrX:6339247-6339367 1.0000 120 chrX:6059290-6059410 1.0000 120 chr3R:14847324-14847444 1.0000 120 chr3L:12442716-12442836 1.0000 120 chr2R:21846122-21846242 1.0000 120 chrX:14074282-14074402 1.0000 120 chr2L:10677475-10677595 1.0000 120 chrX:21074463-21074583 1.0000 120 chr2L:14631160-14631280 1.0000 120 chr3L:21099048-21099168 1.0000 120 chrX:9251391-9251511 1.0000 120 chr2R:20206682-20206802 1.0000 120 chr3L:94205-94325 1.0000 120 chr2R:14513658-14513778 1.0000 120 chrX:11820426-11820546 1.0000 120 chr3L:14984612-14984732 1.0000 120 chr3L:3240449-3240569 1.0000 120 chr2L:20802340-20802460 1.0000 120 chr3R:27140029-27140149 1.0000 120 chr2R:8195120-8195240 1.0000 120 chr2L:18648372-18648492 1.0000 120 chr3L:818522-818642 1.0000 120 chr3R:10517960-10518080 1.0000 120 chr3R:8469834-8469954 1.0000 120 chr3R:22195846-22195966 1.0000 120 chr3R:28633889-28634009 1.0000 120 chr3L:8419138-8419258 1.0000 120 chr2R:12741720-12741840 1.0000 120 chr2L:7602013-7602133 1.0000 120 chr2R:20646218-20646338 1.0000 120 chr2L:20381439-20381559 1.0000 120 chr3R:26892875-26892995 1.0000 120 chr2L:20915407-20915527 1.0000 120 chr3R:13841057-13841177 1.0000 120 chr2R:12732978-12733098 1.0000 120 chr3L:4722018-4722138 1.0000 120 chr3L:19016585-19016705 1.0000 120 chr3L:17608675-17608795 1.0000 120 chr2R:14313655-14313775 1.0000 120 chr2R:9277575-9277695 1.0000 120 chr3R:15634251-15634371 1.0000 120 chr2L:7503832-7503952 1.0000 120 chr3L:5834368-5834488 1.0000 120 chr3R:23486849-23486969 1.0000 120 chr2R:18209800-18209920 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pdm3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pdm3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.343 C 0.154 G 0.156 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.343 C 0.154 G 0.156 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CWGTGCAC MEME-1 width = 8 sites = 21 llr = 200 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6::::a2 pos.-specific C a::::8:6 probability G ::a:a::1 matrix T :4:a:2:1 bits 2.7 * 2.4 * * * 2.2 * * * 1.9 * * ** Relative 1.6 * ***** Entropy 1.3 * ***** (13.8 bits) 1.1 * ***** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20110872-20110992 79 3.63e-06 CGATTTAATA CAGTGCAC TTACAAATGA chr2L:4056926-4057046 109 3.63e-06 ATTATTTTCT CAGTGCAC TTGA chrX:9460761-9460881 105 3.63e-06 ATTTTTCTTG CAGTGCAC ACACCTTG chr3L:6483008-6483128 101 3.63e-06 ATATTTCTGC CAGTGCAC ATGGAACTGC chrX:15543618-15543738 112 3.63e-06 TTTTTTTTCT CAGTGCAC T chr3R:21733093-21733213 109 3.63e-06 ATTTTCCTCC CAGTGCAC ATTT chrX:4970048-4970168 92 7.30e-06 GTATTGTAAA CTGTGCAC TGCTTGTAAA chr2L:4348696-4348816 73 1.10e-05 AAACTAAAAT CAGTGCAG CTAGTTTATA chrX:3296235-3296355 113 1.91e-05 TTTAACTTAG CAGTGCAA chrX:13238677-13238797 102 1.91e-05 AAGTATTTGG CAGTGCAA ATTTTTCGTG chrX:6059290-6059410 112 2.72e-05 GAAATTTGCT CAGTGTAC C chrX:3060255-3060375 56 2.72e-05 TCAAATGACG CAGTGTAC ATATAAGCGA chr3R:25490416-25490536 84 3.10e-05 AAATGATTCA CTGTGCAG ATAAGAGCGA chr2L:3341734-3341854 90 3.91e-05 GTGAACCCAA CTGTGCAA GGGCTTGAAG chr3R:29211145-29211265 10 3.91e-05 GAACCCAAC CTGTGCAA TCAGATTGGA chrX:6339247-6339367 72 4.73e-05 TAAAATCGAC CAGTGCAT TAGTTTAAAA chr2R:17077089-17077209 112 4.73e-05 AACTTGTTTG CAGTGCAT T chr3R:27167474-27167594 86 5.56e-05 TTAACTTTTG CTGTGTAC AATGCAATGC chr3L:4731847-4731967 26 5.56e-05 AATTGAGGAT CTGTGTAC CCAAAGATTC chr3L:4624034-4624154 90 7.47e-05 ACTGGAATTT CTCTGCAC TTCCTGAAAT chr3L:6285555-6285675 113 7.84e-05 GCGTGTCACG GTGTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20110872-20110992 3.6e-06 78_[+1]_34 chr2L:4056926-4057046 3.6e-06 108_[+1]_4 chrX:9460761-9460881 3.6e-06 104_[+1]_8 chr3L:6483008-6483128 3.6e-06 100_[+1]_12 chrX:15543618-15543738 3.6e-06 111_[+1]_1 chr3R:21733093-21733213 3.6e-06 108_[+1]_4 chrX:4970048-4970168 7.3e-06 91_[+1]_21 chr2L:4348696-4348816 1.1e-05 72_[+1]_40 chrX:3296235-3296355 1.9e-05 112_[+1] chrX:13238677-13238797 1.9e-05 101_[+1]_11 chrX:6059290-6059410 2.7e-05 111_[+1]_1 chrX:3060255-3060375 2.7e-05 55_[+1]_57 chr3R:25490416-25490536 3.1e-05 83_[+1]_29 chr2L:3341734-3341854 3.9e-05 89_[+1]_23 chr3R:29211145-29211265 3.9e-05 9_[+1]_103 chrX:6339247-6339367 4.7e-05 71_[+1]_41 chr2R:17077089-17077209 4.7e-05 111_[+1]_1 chr3R:27167474-27167594 5.6e-05 85_[+1]_27 chr3L:4731847-4731967 5.6e-05 25_[+1]_87 chr3L:4624034-4624154 7.5e-05 89_[+1]_23 chr3L:6285555-6285675 7.8e-05 112_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGTGCAC width=8 seqs=21 chr2R:20110872-20110992 ( 79) CAGTGCAC 1 chr2L:4056926-4057046 ( 109) CAGTGCAC 1 chrX:9460761-9460881 ( 105) CAGTGCAC 1 chr3L:6483008-6483128 ( 101) CAGTGCAC 1 chrX:15543618-15543738 ( 112) CAGTGCAC 1 chr3R:21733093-21733213 ( 109) CAGTGCAC 1 chrX:4970048-4970168 ( 92) CTGTGCAC 1 chr2L:4348696-4348816 ( 73) CAGTGCAG 1 chrX:3296235-3296355 ( 113) CAGTGCAA 1 chrX:13238677-13238797 ( 102) CAGTGCAA 1 chrX:6059290-6059410 ( 112) CAGTGTAC 1 chrX:3060255-3060375 ( 56) CAGTGTAC 1 chr3R:25490416-25490536 ( 84) CTGTGCAG 1 chr2L:3341734-3341854 ( 90) CTGTGCAA 1 chr3R:29211145-29211265 ( 10) CTGTGCAA 1 chrX:6339247-6339367 ( 72) CAGTGCAT 1 chr2R:17077089-17077209 ( 112) CAGTGCAT 1 chr3R:27167474-27167594 ( 86) CTGTGTAC 1 chr3L:4731847-4731967 ( 26) CTGTGTAC 1 chr3L:4624034-4624154 ( 90) CTCTGCAC 1 chr3L:6285555-6285675 ( 113) GTGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 1.2e+001 -1104 262 -171 -1104 85 -1104 -1104 13 -1104 -170 261 -1104 -1104 -1104 -1104 153 -1104 -1104 268 -1104 -1104 239 -1104 -87 154 -1104 -1104 -1104 -85 200 -71 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.2e+001 0.000000 0.952381 0.047619 0.000000 0.619048 0.000000 0.000000 0.380952 0.000000 0.047619 0.952381 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.809524 0.000000 0.190476 1.000000 0.000000 0.000000 0.000000 0.190476 0.619048 0.095238 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGTGCAC MEME-1 regular expression -------------------------------------------------------------------------------- C[AT]GTGCAC -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCCACS MEME-2 width = 8 sites = 2 llr = 27 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :::aa:a5 probability G aaa::::5 matrix T :::::::: bits 2.7 ***** * 2.4 ***** * 2.2 ***** * 1.9 ***** * Relative 1.6 ******** Entropy 1.3 ******** (19.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGCCACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8847323-8847443 7 1.47e-06 TAAAAA GGGCCACG GGTGGAGGGT chr3L:2152892-2153012 74 1.47e-06 TTGGGGGAAA GGGCCACC CACAGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8847323-8847443 1.5e-06 6_[+2]_106 chr3L:2152892-2153012 1.5e-06 73_[+2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCCACS width=8 seqs=2 chr3R:8847323-8847443 ( 7) GGGCCACG 1 chr3L:2152892-2153012 ( 74) GGGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.1e+004 -765 -765 268 -765 -765 -765 268 -765 -765 -765 268 -765 -765 269 -765 -765 -765 269 -765 -765 154 -765 -765 -765 -765 269 -765 -765 -765 169 168 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCCACS MEME-2 regular expression -------------------------------------------------------------------------------- GGGCCAC[CG] -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGMTGS MEME-3 width = 8 sites = 21 llr = 193 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7:3::: pos.-specific C :a135::7 probability G a:171:83 matrix T :::::a2: bits 2.7 ** 2.4 ** 2.2 ** 1.9 ** * * Relative 1.6 ** * ** Entropy 1.3 ** * *** (13.3 bits) 1.1 ** * *** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCTGC consensus CA TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9251391-9251511 39 1.65e-06 ACCAGGAAAT GCAGCTGC GGCCACAATA chr3L:5834368-5834488 20 4.81e-06 GAGAAAACTT GCAGCTGG CAAAACTAAA chr2L:11386507-11386627 73 4.81e-06 ATAAATATTT GCAGCTGG CAGTAAGAGT chr2R:10772064-10772184 22 6.44e-06 CGCTTTTATT GCACCTGC TTACTCACTT chrX:3380306-3380426 18 1.18e-05 GATCAGATAA GCAGATGC TTATTATTAT chr3R:30284079-30284199 7 1.48e-05 AGGGTA GCGCCTGC ACAGTGGTTG chr3R:14498228-14498348 36 2.13e-05 TGGTGTGACT GCCGGTGC GTAAAAGTAA chrX:3055898-3056018 33 2.13e-05 AAAATTGCTT GCCGATGC TAAAATTGTT chr2L:20381439-20381559 73 3.03e-05 ACATTGCGCA GCAGATGG AGTTTTCACG chr3L:1829664-1829784 93 3.03e-05 GTATATATAT GCAGATGG CTTGTCACCA chr2R:11083866-11083986 75 3.03e-05 GTAAAACTTT GCAGCTTC AGCTTATGAC chr2L:2944667-2944787 82 3.56e-05 TCACCCTAAT GCACGTGC GTAGGGGTCT chr3R:16368460-16368580 72 3.64e-05 TTGGAATTTA GCAGCCGC TTTTAGGTAT chr3R:9934996-9935116 94 3.95e-05 CGATTTGACT GCTGCTGC CATTTGAATT chrX:16318962-16319082 66 4.77e-05 TTTTCCTAAT GCCGCTTC TCTATAAATC chr2L:7949942-7950062 12 5.62e-05 TACTTCTTCT GCAGCTTG GGTTTTATAT chr2L:18146789-18146909 92 5.62e-05 AGCACTAATC GCGCATGC TAACGACATG chr3L:12090419-12090539 28 5.62e-05 ATTTACTGCT GCAGCTTG TTACCAAAGC chr3R:27186316-27186436 30 5.62e-05 GACGGCGCAT GCGCATGC CGACGTCGAT chr2L:3881300-3881420 52 6.59e-05 CTTCTTAGTT GCACGTGG AACTCTACTT chr3L:6269168-6269288 10 7.92e-05 AAAACCAAT GCAGATTC TTTTGAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9251391-9251511 1.7e-06 38_[+3]_74 chr3L:5834368-5834488 4.8e-06 19_[+3]_93 chr2L:11386507-11386627 4.8e-06 72_[+3]_40 chr2R:10772064-10772184 6.4e-06 21_[+3]_91 chrX:3380306-3380426 1.2e-05 17_[+3]_95 chr3R:30284079-30284199 1.5e-05 6_[+3]_106 chr3R:14498228-14498348 2.1e-05 35_[+3]_77 chrX:3055898-3056018 2.1e-05 32_[+3]_80 chr2L:20381439-20381559 3e-05 72_[+3]_40 chr3L:1829664-1829784 3e-05 92_[+3]_20 chr2R:11083866-11083986 3e-05 74_[+3]_38 chr2L:2944667-2944787 3.6e-05 81_[+3]_31 chr3R:16368460-16368580 3.6e-05 71_[+3]_41 chr3R:9934996-9935116 4e-05 93_[+3]_19 chrX:16318962-16319082 4.8e-05 65_[+3]_47 chr2L:7949942-7950062 5.6e-05 11_[+3]_101 chr2L:18146789-18146909 5.6e-05 91_[+3]_21 chr3L:12090419-12090539 5.6e-05 27_[+3]_85 chr3R:27186316-27186436 5.6e-05 29_[+3]_83 chr2L:3881300-3881420 6.6e-05 51_[+3]_61 chr3L:6269168-6269288 7.9e-05 9_[+3]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGMTGS width=8 seqs=21 chrX:9251391-9251511 ( 39) GCAGCTGC 1 chr3L:5834368-5834488 ( 20) GCAGCTGG 1 chr2L:11386507-11386627 ( 73) GCAGCTGG 1 chr2R:10772064-10772184 ( 22) GCACCTGC 1 chrX:3380306-3380426 ( 18) GCAGATGC 1 chr3R:30284079-30284199 ( 7) GCGCCTGC 1 chr3R:14498228-14498348 ( 36) GCCGGTGC 1 chrX:3055898-3056018 ( 33) GCCGATGC 1 chr2L:20381439-20381559 ( 73) GCAGATGG 1 chr3L:1829664-1829784 ( 93) GCAGATGG 1 chr2R:11083866-11083986 ( 75) GCAGCTTC 1 chr2L:2944667-2944787 ( 82) GCACGTGC 1 chr3R:16368460-16368580 ( 72) GCAGCCGC 1 chr3R:9934996-9935116 ( 94) GCTGCTGC 1 chrX:16318962-16319082 ( 66) GCCGCTTC 1 chr2L:7949942-7950062 ( 12) GCAGCTTG 1 chr2L:18146789-18146909 ( 92) GCGCATGC 1 chr3L:12090419-12090539 ( 28) GCAGCTTG 1 chr3R:27186316-27186436 ( 30) GCGCATGC 1 chr2L:3881300-3881420 ( 52) GCACGTGG 1 chr3L:6269168-6269288 ( 10) GCAGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 2.3e+004 -1104 -1104 268 -1104 -1104 269 -1104 -1104 96 -11 -12 -286 -1104 89 220 -1104 -4 176 -12 -1104 -1104 -170 -1104 146 -1104 -1104 229 -54 -1104 211 110 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.142857 0.142857 0.047619 0.000000 0.285714 0.714286 0.000000 0.333333 0.523810 0.142857 0.000000 0.000000 0.047619 0.000000 0.952381 0.000000 0.000000 0.761905 0.238095 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGMTGS MEME-3 regular expression -------------------------------------------------------------------------------- GCA[GC][CA]T[GT][CG] -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGCCC MEME-4 width = 8 sites = 12 llr = 123 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::2:: pos.-specific C :1:::88a probability G 8:a3a13: matrix T 38:8:::: bits 2.7 * * * 2.4 * * * 2.2 * * * 1.9 * * ** Relative 1.6 * * * ** Entropy 1.3 * * **** (14.8 bits) 1.1 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGTGCCC consensus T G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3380306-3380426 65 1.67e-06 AAATTGCCTT GTGTGCCC CTGTGTTACG chrX:2107910-2108030 5 2.42e-06 CGCA GTGGGCCC TAAAAAGCTC chr3L:19011313-19011433 108 4.11e-06 ATTTCTTTCT GTGTGCGC CTTTC chr3L:94205-94325 100 5.61e-06 TCATTTTAAT GTGGGCGC GCATTTTGTA chr3L:12090419-12090539 2 5.61e-06 A GCGTGCCC ATGTGGAAAT chr3R:24996622-24996742 43 9.66e-06 ACTGAAACTA TTGTGCCC AACAATCTTT chr3L:2795715-2795835 61 9.66e-06 ATTCACCTTA TTGTGCCC ATCTTATTTT chr2R:12741720-12741840 81 1.84e-05 TTCAGCACTC GAGTGCCC CCCTGGCAGA chr3R:22184197-22184317 31 1.84e-05 TTAGTTTAAA GTGTGACC TTGCAATGTT chrX:17518421-17518541 95 1.84e-05 ATATACGTAA GTGTGACC AGCCGAACAA chr3L:11365842-11365962 28 1.91e-05 AGCTGGCACA GTGGGGCC AACGACGGGT chrX:7177266-7177386 58 2.64e-05 TGAAATCACT TTGTGCGC CATTGGTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3380306-3380426 1.7e-06 64_[+4]_48 chrX:2107910-2108030 2.4e-06 4_[+4]_108 chr3L:19011313-19011433 4.1e-06 107_[+4]_5 chr3L:94205-94325 5.6e-06 99_[+4]_13 chr3L:12090419-12090539 5.6e-06 1_[+4]_111 chr3R:24996622-24996742 9.7e-06 42_[+4]_70 chr3L:2795715-2795835 9.7e-06 60_[+4]_52 chr2R:12741720-12741840 1.8e-05 80_[+4]_32 chr3R:22184197-22184317 1.8e-05 30_[+4]_82 chrX:17518421-17518541 1.8e-05 94_[+4]_18 chr3L:11365842-11365962 1.9e-05 27_[+4]_85 chrX:7177266-7177386 2.6e-05 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGCCC width=8 seqs=12 chrX:3380306-3380426 ( 65) GTGTGCCC 1 chrX:2107910-2108030 ( 5) GTGGGCCC 1 chr3L:19011313-19011433 ( 108) GTGTGCGC 1 chr3L:94205-94325 ( 100) GTGGGCGC 1 chr3L:12090419-12090539 ( 2) GCGTGCCC 1 chr3R:24996622-24996742 ( 43) TTGTGCCC 1 chr3L:2795715-2795835 ( 61) TTGTGCCC 1 chr2R:12741720-12741840 ( 81) GAGTGCCC 1 chr3R:22184197-22184317 ( 31) GTGTGACC 1 chrX:17518421-17518541 ( 95) GTGTGACC 1 chr3L:11365842-11365962 ( 28) GTGGGGCC 1 chrX:7177266-7177386 ( 58) TTGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 2.9e+004 -1023 -1023 227 -47 -204 -89 -1023 126 -1023 -1023 268 -1023 -1023 -1023 68 111 -1023 -1023 268 -1023 -104 228 -90 -1023 -1023 228 68 -1023 -1023 269 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.9e+004 0.000000 0.000000 0.750000 0.250000 0.083333 0.083333 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.166667 0.750000 0.083333 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCC MEME-4 regular expression -------------------------------------------------------------------------------- [GT]TG[TG]GC[CG]C -------------------------------------------------------------------------------- Time 25.93 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGACTGC MEME-5 width = 8 sites = 2 llr = 27 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C aa::a::a probability G ::a:::a: matrix T :::::a:: bits 2.7 *** * ** 2.4 *** * ** 2.2 *** * ** 1.9 *** * ** Relative 1.6 ******** Entropy 1.3 ******** (19.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGACTGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20646218-20646338 4 1.63e-06 GAA CCGACTGC GAAGGCAAAC chr3L:1464570-1464690 42 1.63e-06 taatAAGCGG CCGACTGC GATTTCGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20646218-20646338 1.6e-06 3_[+5]_109 chr3L:1464570-1464690 1.6e-06 41_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGACTGC width=8 seqs=2 chr2R:20646218-20646338 ( 4) CCGACTGC 1 chr3L:1464570-1464690 ( 42) CCGACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.5e+004 -765 269 -765 -765 -765 269 -765 -765 -765 -765 268 -765 154 -765 -765 -765 -765 269 -765 -765 -765 -765 -765 152 -765 -765 268 -765 -765 269 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGACTGC MEME-5 regular expression -------------------------------------------------------------------------------- CCGACTGC -------------------------------------------------------------------------------- Time 32.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8358044-8358164 5.46e-01 120 chr3R:31443616-31443736 8.12e-01 120 chrX:1466286-1466406 6.64e-01 120 chrX:2358341-2358461 6.32e-01 120 chrX:9468420-9468540 9.67e-01 120 chr3L:21080605-21080725 9.02e-01 120 chr3R:8234021-8234141 6.22e-01 120 chr3R:21733093-21733213 3.67e-03 108_[+1(3.63e-06)]_4 chr3R:16368460-16368580 1.07e-01 71_[+3(3.64e-05)]_41 chr2R:16812860-16812980 9.93e-01 120 chr2L:14624053-14624173 2.27e-01 120 chrX:13238677-13238797 1.85e-01 101_[+1(1.91e-05)]_11 chr2L:18341078-18341198 4.18e-01 120 chr2R:13478527-13478647 9.86e-02 120 chr3L:2800441-2800561 2.41e-02 120 chr3L:2795715-2795835 4.36e-02 60_[+4(9.66e-06)]_52 chr3L:14534794-14534914 9.57e-01 120 chr3L:2152892-2153012 2.55e-05 4_[+5(6.12e-05)]_61_[+2(1.47e-06)]_\ 39 chr2R:17099743-17099863 8.77e-01 120 chr2R:11083866-11083986 1.87e-03 57_[+2(5.58e-05)]_9_[+3(3.03e-05)]_\ 38 chr3L:767028-767148 3.24e-01 120 chr2L:16498218-16498338 9.93e-01 120 chr3R:13806843-13806963 8.15e-01 120 chr3L:21738562-21738682 8.20e-01 120 chr2R:13473953-13474073 9.11e-01 120 chrX:14897754-14897874 1.84e-01 120 chr2R:17077089-17077209 1.54e-01 111_[+1(4.73e-05)]_1 chr3R:14390618-14390738 3.85e-01 120 chrX:2788725-2788845 9.77e-01 120 chr3R:29758514-29758634 9.31e-01 120 chr3R:14775528-14775648 9.10e-01 120 chr3L:10968764-10968884 6.92e-01 120 chr2R:21550571-21550691 5.91e-01 120 chr3L:19315013-19315133 7.89e-01 120 chr3L:6446688-6446808 9.96e-01 120 chr3R:24996622-24996742 1.15e-02 42_[+4(9.66e-06)]_70 chrX:3296235-3296355 2.14e-01 112_[+1(1.91e-05)] chr2R:12646888-12647008 7.58e-01 120 chr2R:7912133-7912253 6.53e-01 120 chr2L:3881300-3881420 3.03e-01 51_[+3(6.59e-05)]_61 chrX:3055898-3056018 1.65e-02 32_[+3(2.13e-05)]_80 chrX:8255024-8255144 9.25e-01 120 chr2L:7611712-7611832 9.76e-01 120 chrX:8891094-8891214 3.80e-01 120 chr2R:9557590-9557710 6.57e-01 120 chrX:17518421-17518541 3.52e-02 94_[+4(1.84e-05)]_18 chr2L:2944667-2944787 4.71e-03 81_[+3(3.56e-05)]_31 chr3R:20283354-20283474 1.37e-01 120 chr2R:23761507-23761627 4.12e-01 120 chr3R:9346756-9346876 5.13e-01 120 chrX:15543618-15543738 3.82e-02 111_[+1(3.63e-06)]_1 chr2R:8345439-8345559 6.57e-01 120 chrX:5926841-5926961 6.10e-02 120 chr3L:19011313-19011433 3.23e-03 107_[+4(4.11e-06)]_5 chr3R:12442708-12442828 6.87e-01 120 chr2L:11399576-11399696 5.99e-01 120 chrX:2455467-2455587 7.50e-01 120 chrX:21073797-21073917 8.84e-01 120 chrX:740003-740123 9.35e-02 120 chr2R:11324030-11324150 8.63e-01 120 chr2L:13056146-13056266 3.07e-01 120 chr2L:19325546-19325666 8.04e-01 120 chr2L:9447930-9448050 8.64e-01 120 chr3R:31482252-31482372 2.62e-01 120 chr3L:6997044-6997164 8.13e-01 120 chr2R:14082368-14082488 1.00e+00 120 chr3L:6483008-6483128 1.95e-03 100_[+1(3.63e-06)]_12 chr2L:1574147-1574267 7.56e-02 120 chrX:7177266-7177386 8.89e-03 57_[+4(2.64e-05)]_24_[+2(5.58e-05)]_\ 23 chr2L:15392477-15392597 4.69e-01 120 chr3L:787748-787868 6.28e-01 120 chrX:10581629-10581749 4.41e-01 120 chr2R:9691816-9691936 1.00e+00 120 chr3R:29004992-29005112 2.56e-01 120 chr2L:4069739-4069859 9.83e-01 120 chr3L:4624034-4624154 2.87e-01 89_[+1(7.47e-05)]_23 chr3R:31688865-31688985 7.26e-01 120 chr3R:25461824-25461944 9.95e-01 120 chr2L:171945-172065 9.97e-01 120 chr3L:6269168-6269288 1.33e-01 9_[+3(7.92e-05)]_103 chr3L:20952227-20952347 2.82e-01 120 chr2L:18344466-18344586 7.51e-02 120 chr2L:17449852-17449972 1.60e-01 120 chr3L:14451667-14451787 5.40e-02 120 chrX:17298081-17298201 5.01e-01 120 chr2R:10772064-10772184 2.18e-03 21_[+3(6.44e-06)]_91 chr3L:4407883-4408003 6.68e-01 120 chr3R:8847323-8847443 1.87e-03 6_[+2(1.47e-06)]_106 chr3L:21738806-21738926 7.59e-01 120 chr3L:4731847-4731967 5.46e-02 25_[+1(5.56e-05)]_87 chr2L:18628255-18628375 8.41e-01 120 chrX:13972550-13972670 9.64e-01 120 chr3L:2802197-2802317 2.17e-01 120 chr2L:19252514-19252634 2.79e-01 120 chr3R:14684061-14684181 3.28e-01 120 chr3R:18481140-18481260 8.02e-01 120 chr3L:1374631-1374751 4.04e-02 120 chr2L:4071679-4071799 3.19e-01 120 chr2R:14081690-14081810 3.53e-01 120 chr3R:14290175-14290295 8.07e-02 120 chr2L:249625-249745 5.46e-01 120 chr3L:15220445-15220565 7.06e-01 120 chrX:3289510-3289630 7.20e-02 120 chr3R:14498228-14498348 1.77e-03 35_[+3(2.13e-05)]_77 chr3R:8968964-8969084 9.58e-01 120 chr2L:8919784-8919904 7.59e-01 120 chr3R:18485417-18485537 7.29e-01 120 chr3R:13808013-13808133 4.91e-01 120 chr2L:18005608-18005728 7.19e-01 120 chrX:1826211-1826331 1.61e-01 120 chr3R:22184197-22184317 1.41e-01 30_[+4(1.84e-05)]_82 chr3R:25490416-25490536 1.02e-02 83_[+1(3.10e-05)]_29 chrX:3380306-3380426 2.76e-05 17_[+3(1.18e-05)]_39_[+4(1.67e-06)]_\ 13_[+4(1.84e-05)]_27 chr2L:4055508-4055628 2.25e-01 120 chr3R:27186316-27186436 2.52e-04 23_[+3(5.62e-05)]_23_[+5(6.12e-05)]_\ 58 chr3R:13845984-13846104 8.19e-01 120 chr3L:20552027-20552147 7.87e-01 120 chr3L:11656380-11656500 1.40e-01 120 chr2L:11968654-11968774 6.59e-01 120 chr2L:11386507-11386627 4.40e-03 72_[+3(4.81e-06)]_40 chr2R:20195240-20195360 9.54e-01 120 chrX:7544047-7544167 7.73e-01 120 chr2L:18372219-18372339 5.37e-01 120 chr3R:15566478-15566598 4.15e-01 120 chrX:4970048-4970168 3.06e-02 91_[+1(7.30e-06)]_21 chr3L:5365280-5365400 2.34e-01 120 chr3R:30814984-30815104 3.12e-01 120 chr3R:16119608-16119728 5.20e-01 120 chr3R:13934736-13934856 6.02e-01 120 chr3R:30805242-30805362 6.86e-01 120 chrX:3060255-3060375 3.58e-02 55_[+1(2.72e-05)]_57 chr3L:1464570-1464690 2.79e-05 41_[+5(1.63e-06)]_71 chr3L:4619893-4620013 3.89e-01 120 chr3L:6285555-6285675 2.57e-04 112_[+1(7.84e-05)] chr3R:30134812-30134932 8.88e-01 120 chrX:10105816-10105936 9.46e-01 120 chr3L:10913357-10913477 8.82e-01 120 chr3R:30076214-30076334 1.31e-01 120 chr2R:14782984-14783104 8.67e-01 120 chr2R:21569755-21569875 8.43e-01 120 chrX:10104627-10104747 9.54e-01 120 chr3L:16762347-16762467 6.66e-01 120 chrX:7892627-7892747 9.53e-01 120 chr3R:29538582-29538702 4.55e-01 120 chr3R:5042595-5042715 7.34e-01 120 chr3R:11806919-11807039 7.09e-01 120 chrX:5786643-5786763 1.93e-01 120 chr2R:22570702-22570822 6.50e-01 120 chr2R:8650573-8650693 6.67e-01 120 chrX:17726688-17726808 4.72e-01 120 chrX:5897197-5897317 9.99e-01 120 chrX:17229906-17230026 2.67e-01 120 chrX:9460761-9460881 5.77e-03 104_[+1(3.63e-06)]_8 chr3R:30284079-30284199 1.67e-03 6_[+3(1.48e-05)]_106 chr3L:4836470-4836590 9.98e-01 120 chr3L:12090419-12090539 3.68e-04 1_[+4(5.61e-06)]_18_[+3(5.62e-05)]_\ 85 chr2R:16812274-16812394 9.66e-01 120 chr2R:9282831-9282951 5.34e-01 120 chr3L:16482267-16482387 5.19e-01 120 chr2L:18523135-18523255 6.98e-01 120 chr3L:11365842-11365962 6.45e-04 27_[+4(1.91e-05)]_85 chr3R:27167474-27167594 5.09e-02 85_[+1(5.56e-05)]_27 chrX:9047139-9047259 7.49e-01 120 chr2L:675055-675175 1.25e-01 120 chr3L:10794021-10794141 3.12e-01 120 chrX:19145211-19145331 8.74e-01 120 chr2L:18146789-18146909 1.77e-01 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