******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/pad.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:25279936-25280056 1.0000 120 chr3L:22572411-22572531 1.0000 120 chrX:13374276-13374396 1.0000 120 chr4:1306496-1306616 1.0000 120 chr2L:6412092-6412212 1.0000 120 chr3L:3061188-3061308 1.0000 120 chr3R:25638520-25638640 1.0000 120 chrX:11894293-11894413 1.0000 120 chrX:1904122-1904242 1.0000 120 chr2L:12272512-12272632 1.0000 120 chrX:5433021-5433141 1.0000 120 chr2R:7955312-7955432 1.0000 120 chrX:3867926-3868046 1.0000 120 chr2L:4185408-4185528 1.0000 120 chrX:5433222-5433342 1.0000 120 chr3R:14021349-14021469 1.0000 120 chrX:10479401-10479521 1.0000 120 chr3L:489493-489613 1.0000 120 chr3L:18072135-18072255 1.0000 120 chr2L:73847-73967 1.0000 120 chr2L:12027574-12027694 1.0000 120 chr3L:3071821-3071941 1.0000 120 chr2L:16042811-16042931 1.0000 120 chr2R:1591589-1591709 1.0000 120 chr3R:10311215-10311335 1.0000 120 chrX:16063481-16063601 1.0000 120 chrX:17611596-17611716 1.0000 120 chr3L:3425012-3425132 1.0000 120 chr3R:25438492-25438612 1.0000 120 chrX:11987751-11987871 1.0000 120 chr3L:4556970-4557090 1.0000 120 chr3R:8698015-8698135 1.0000 120 chr3R:9159052-9159172 1.0000 120 chr3R:23181853-23181973 1.0000 120 chr3R:11330852-11330972 1.0000 120 chr3R:8935069-8935189 1.0000 120 chr3R:24260307-24260427 1.0000 120 chrX:21311745-21311865 1.0000 120 chrX:10070464-10070584 1.0000 120 chr3R:23279707-23279827 1.0000 120 chr2R:7782027-7782147 1.0000 120 chr2R:16901664-16901784 1.0000 120 chr2L:13349376-13349496 1.0000 120 chr2R:9293724-9293844 1.0000 120 chr3L:9681195-9681315 1.0000 120 chrX:5905342-5905462 1.0000 120 chr3R:11334412-11334532 1.0000 120 chr2L:20230154-20230274 1.0000 120 chrX:619359-619479 1.0000 120 chrX:10891072-10891192 1.0000 120 chrX:13821563-13821683 1.0000 120 chr2L:16539061-16539181 1.0000 120 chrX:4119691-4119811 1.0000 120 chrX:14951485-14951605 1.0000 120 chr2R:22059044-22059164 1.0000 120 chr2R:16431748-16431868 1.0000 120 chr3L:3461677-3461797 1.0000 120 chrX:3369583-3369703 1.0000 120 chrX:1620049-1620169 1.0000 120 chr2R:24967750-24967870 1.0000 120 chr3L:10322020-10322140 1.0000 120 chr3R:20284318-20284438 1.0000 120 chr2L:13349642-13349762 1.0000 120 chr3L:18957191-18957311 1.0000 120 chr3R:14088523-14088643 1.0000 120 chr3L:18896444-18896564 1.0000 120 chr3L:4574568-4574688 1.0000 120 chrX:22481556-22481676 1.0000 120 chr2R:22806361-22806481 1.0000 120 chrX:18930981-18931101 1.0000 120 chrX:19260254-19260374 1.0000 120 chr2R:7786342-7786462 1.0000 120 chr2L:20330297-20330417 1.0000 120 chr2L:1043330-1043450 1.0000 120 chrX:8569164-8569284 1.0000 120 chr3R:28801961-28802081 1.0000 120 chr3R:8935275-8935395 1.0000 120 chr3L:19632018-19632138 1.0000 120 chrX:5885691-5885811 1.0000 120 chr3R:28874883-28875003 1.0000 120 chrX:5650122-5650242 1.0000 120 chr2L:19590749-19590869 1.0000 120 chr3L:439683-439803 1.0000 120 chr3L:7911009-7911129 1.0000 120 chr2L:15271496-15271616 1.0000 120 chr3L:9903086-9903206 1.0000 120 chrX:11873198-11873318 1.0000 120 chrX:7445166-7445286 1.0000 120 chr2L:18156049-18156169 1.0000 120 chr3R:31938459-31938579 1.0000 120 chrX:16792788-16792908 1.0000 120 chr2R:21297768-21297888 1.0000 120 chr3L:805182-805302 1.0000 120 chr2R:12120404-12120524 1.0000 120 chr3L:6979355-6979475 1.0000 120 chr3R:18698994-18699114 1.0000 120 chr3R:18680371-18680491 1.0000 120 chr4:1318969-1319089 1.0000 120 chr3L:20348793-20348913 1.0000 120 chrX:19260523-19260643 1.0000 120 chr3R:13363471-13363591 1.0000 120 chr2L:15752152-15752272 1.0000 120 chrX:5637720-5637840 1.0000 120 chr2L:19164752-19164872 1.0000 120 chr3L:3926330-3926450 1.0000 120 chrX:2551984-2552104 1.0000 120 chrX:7338055-7338175 1.0000 120 chr4:425067-425187 1.0000 120 chr3R:23182086-23182206 1.0000 120 chr2L:16043011-16043131 1.0000 120 chrX:2297978-2298098 1.0000 120 chr3L:12788498-12788618 1.0000 120 chrX:8490412-8490532 1.0000 120 chrX:1774384-1774504 1.0000 120 chr2L:7809033-7809153 1.0000 120 chr3R:5322171-5322291 1.0000 120 chr2L:2800044-2800164 1.0000 120 chr2L:9386409-9386529 1.0000 120 chr3R:18547126-18547246 1.0000 120 chr3L:13674372-13674492 1.0000 120 chr3L:8738955-8739075 1.0000 120 chrX:477290-477410 1.0000 120 chr3L:17813154-17813274 1.0000 120 chr3L:2228735-2228855 1.0000 120 chr2L:19440879-19440999 1.0000 120 chr3L:10246479-10246599 1.0000 120 chrX:7298415-7298535 1.0000 120 chr2L:2195441-2195561 1.0000 120 chr3R:12977932-12978052 1.0000 120 chrX:12987108-12987228 1.0000 120 chr3R:20958867-20958987 1.0000 120 chrX:12988168-12988288 1.0000 120 chr2R:24927394-24927514 1.0000 120 chrX:22480777-22480897 1.0000 120 chrX:13358423-13358543 1.0000 120 chrX:11679958-11680078 1.0000 120 chr3R:7394535-7394655 1.0000 120 chrX:11679689-11679809 1.0000 120 chrX:3775279-3775399 1.0000 120 chr2R:21161119-21161239 1.0000 120 chr2R:9294516-9294636 1.0000 120 chr3R:5365270-5365390 1.0000 120 chrX:12662024-12662144 1.0000 120 chr3R:24016518-24016638 1.0000 120 chr3R:29376538-29376658 1.0000 120 chr3R:16501194-16501314 1.0000 120 chr2L:18106293-18106413 1.0000 120 chr2L:16447218-16447338 1.0000 120 chrX:18864727-18864847 1.0000 120 chrX:13281762-13281882 1.0000 120 chr3L:4840666-4840786 1.0000 120 chr3L:16807329-16807449 1.0000 120 chrX:9035362-9035482 1.0000 120 chr3L:8913300-8913420 1.0000 120 chr2R:20998799-20998919 1.0000 120 chr3R:12021143-12021263 1.0000 120 chrX:13752775-13752895 1.0000 120 chr3L:7911214-7911334 1.0000 120 chr2R:16896803-16896923 1.0000 120 chr3R:11947647-11947767 1.0000 120 chr2R:8568410-8568530 1.0000 120 chrX:6875184-6875304 1.0000 120 chr3R:11331075-11331195 1.0000 120 chrX:15333763-15333883 1.0000 120 chrX:18864525-18864645 1.0000 120 chr3L:20349001-20349121 1.0000 120 chr2R:11172220-11172340 1.0000 120 chr3R:13434409-13434529 1.0000 120 chrX:1009791-1009911 1.0000 120 chr3L:16854742-16854862 1.0000 120 chr4:389053-389173 1.0000 120 chr2L:16198269-16198389 1.0000 120 chrX:618106-618226 1.0000 120 chrX:4909641-4909761 1.0000 120 chr3L:9927275-9927395 1.0000 120 chr3L:20885352-20885472 1.0000 120 chr3R:21200702-21200822 1.0000 120 chrX:11922780-11922900 1.0000 120 chrX:1267757-1267877 1.0000 120 chr3L:7772259-7772379 1.0000 120 chr3R:12857650-12857770 1.0000 120 chrX:7967490-7967610 1.0000 120 chr3R:8306315-8306435 1.0000 120 chr3R:23279918-23280038 1.0000 120 chr3L:748974-749094 1.0000 120 chr3L:8997301-8997421 1.0000 120 chr3R:21612593-21612713 1.0000 120 chrX:5636811-5636931 1.0000 120 chr2R:13550223-13550343 1.0000 120 chr3L:1529236-1529356 1.0000 120 chr2R:11613057-11613177 1.0000 120 chrX:5745550-5745670 1.0000 120 chr3L:18846607-18846727 1.0000 120 chr3R:18089492-18089612 1.0000 120 chr3R:22727581-22727701 1.0000 120 chr3L:19079220-19079340 1.0000 120 chr3L:6216831-6216951 1.0000 120 chr3R:13304816-13304936 1.0000 120 chr2R:6971041-6971161 1.0000 120 chrX:3470607-3470727 1.0000 120 chr2R:8288916-8289036 1.0000 120 chrX:10070663-10070783 1.0000 120 chr3R:26606682-26606802 1.0000 120 chr3L:9401559-9401679 1.0000 120 chr3L:17254346-17254466 1.0000 120 chr2L:2131851-2131971 1.0000 120 chr3R:18160456-18160576 1.0000 120 chrX:5446418-5446538 1.0000 120 chr2L:3144037-3144157 1.0000 120 chrX:13284327-13284447 1.0000 120 chr3R:11567285-11567405 1.0000 120 chr2L:18118343-18118463 1.0000 120 chrX:3377668-3377788 1.0000 120 chr3R:21043659-21043779 1.0000 120 chr2R:22940959-22941079 1.0000 120 chr2L:395675-395795 1.0000 120 chrX:16694558-16694678 1.0000 120 chr3R:18731402-18731522 1.0000 120 chrX:16792581-16792701 1.0000 120 chr2R:22245054-22245174 1.0000 120 chr3L:18182041-18182161 1.0000 120 chr3R:7394316-7394436 1.0000 120 chr3R:27603945-27604065 1.0000 120 chr2R:7786575-7786695 1.0000 120 chrX:19498909-19499029 1.0000 120 chr3L:10776809-10776929 1.0000 120 chr3R:8931184-8931304 1.0000 120 chr2R:13363004-13363124 1.0000 120 chrX:19510381-19510501 1.0000 120 chr3L:2553572-2553692 1.0000 120 chrX:4203860-4203980 1.0000 120 chrX:8049418-8049538 1.0000 120 chr2L:17328003-17328123 1.0000 120 chrX:619560-619680 1.0000 120 chr3L:9907811-9907931 1.0000 120 chr3L:3072963-3073083 1.0000 120 chr2R:18760713-18760833 1.0000 120 chr3R:11759353-11759473 1.0000 120 chr2R:23632763-23632883 1.0000 120 chrX:15075601-15075721 1.0000 120 chr2R:6648658-6648778 1.0000 120 chr3R:9516838-9516958 1.0000 120 chr2L:20720238-20720358 1.0000 120 chr2R:10383509-10383629 1.0000 120 chr2R:17850236-17850356 1.0000 120 chr3R:20991087-20991207 1.0000 120 chrX:546491-546611 1.0000 120 chr3R:13042741-13042861 1.0000 120 chrX:15465469-15465589 1.0000 120 chr3R:25056805-25056925 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_pad/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/pad.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.269 C 0.23 G 0.225 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.269 C 0.23 G 0.225 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTCCCCT MEME-1 width = 8 sites = 95 llr = 765 E-value = 1.4e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:1::::2 pos.-specific C 2::a9aa1 probability G 1:1::::1 matrix T 7a8:1::7 bits 2.2 * * 1.9 * ** 1.7 * * ** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ****** (11.6 bits) 0.9 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20720238-20720358 46 1.62e-05 GCGGCTCAGT TTTCCCCT TCTTTGTGGC chr3R:11759353-11759473 66 1.62e-05 TTTCGAAACG TTTCCCCT CACATACAGA chr3L:9907811-9907931 78 1.62e-05 TGCCATTCCA TTTCCCCT GCGCGCAACA chrX:8049418-8049538 39 1.62e-05 ACCCTTATCA TTTCCCCT CTCGCTCGCT chr3R:27603945-27604065 67 1.62e-05 AAATAACTGC TTTCCCCT GATTTAGTCG chr3L:20885352-20885472 107 1.62e-05 GTTGGGGTAT TTTCCCCT TTTCGT chr3L:9927275-9927395 55 1.62e-05 TAGTACAGAT TTTCCCCT GATTCGCGCA chr2L:16198269-16198389 29 1.62e-05 CAATAAGTCA TTTCCCCT TCAGCAAACA chr2R:11172220-11172340 45 1.62e-05 GCACCACGAA TTTCCCCT CCTTCCAGCT chr3L:4840666-4840786 56 1.62e-05 GCAACCATTC TTTCCCCT ATTTTTTCCA chrX:12988168-12988288 30 1.62e-05 GAGCTGAGCA TTTCCCCT CAAGTGGCAG chr3L:10246479-10246599 54 1.62e-05 CTACATTGAT TTTCCCCT CTCAGAAACT chr3L:13674372-13674492 56 1.62e-05 TTGAGGGAAA TTTCCCCT TATCATTTTG chr4:425067-425187 112 1.62e-05 CTCCTTAAAT TTTCCCCT T chr2L:15752152-15752272 59 1.62e-05 AATAGCTTAA TTTCCCCT CAAAATAGAC chr4:1318969-1319089 82 1.62e-05 ttgggagtaa tttcccct taaatgtgtg chr3L:805182-805302 90 1.62e-05 TGCCTCTTAC TTTCCCCT ATTTTGTAAG chrX:7445166-7445286 54 1.62e-05 CATTTTCGAA TTTCCCCT TGTTCGAAAA chr2L:19590749-19590869 86 1.62e-05 AATGAACCAA TTTCCCCT TCGCTGGTGC chr3R:28874883-28875003 81 1.62e-05 GTATTGATGA TTTCCCCT GTCTAGCTGA chrX:5885691-5885811 37 1.62e-05 TCGGGGTAAG TTTCCCCT GAATGCGGCG chr2L:13349642-13349762 98 1.62e-05 ACGTGTACGA TTTCCCCT TTATGACTTT chrX:17611596-17611716 10 1.62e-05 AATCGCGAA TTTCCCCT GAGGCACGAT chr3L:489493-489613 29 1.62e-05 TTCATATATT TTTCCCCT ACTTTTTCCT chrX:10479401-10479521 73 1.62e-05 TGATCATAGC TTTCCCCT CCGCTCAGCG chr4:1306496-1306616 94 1.62e-05 gagaaggcaa tttcccct tcgagaagct chr3R:25056805-25056925 38 4.56e-05 TTCCTTCCCA TTTCCCCA CTTTCGCCCA chr2R:10383509-10383629 65 4.56e-05 TGAAGCTCAC TTTCCCCA CAGCTTTCCC chrX:3470607-3470727 74 4.56e-05 ATTCGACGCG CTTCCCCT CCACCAAAAA chr3L:6216831-6216951 44 4.56e-05 ACTCCAAAGC CTTCCCCT TTGCCAACAA chr3L:748974-749094 82 4.56e-05 CACTACACAT CTTCCCCT CTTAAGATCT chrX:11922780-11922900 53 4.56e-05 AATATATACA TTTCCCCA TCTGCGTACG chrX:22480777-22480897 67 4.56e-05 TGCTTTCGTC CTTCCCCT CTTTTATACC chrX:7298415-7298535 74 4.56e-05 AGTGAAAGAA CTTCCCCT catgcataca chr3R:18547126-18547246 71 4.56e-05 CTTTTGCGCA TTTCCCCA GCCCATCGCa chr3L:4574568-4574688 88 4.56e-05 CTGTTGCGCA TTTCCCCA GCCAGGACTC chrX:14951485-14951605 102 4.56e-05 TCCCACGCAC CTTCCCCT CCTTGAGAAC chr3R:8698015-8698135 72 4.56e-05 TCTGAGTGAC TTTCCCCA TCCCCAAAAG chrX:16063481-16063601 86 4.56e-05 CAGACCTTTC TTTCCCCA ACTAGGGGAG chr2R:1591589-1591709 48 4.56e-05 aaatagcata tttcccca tactgggaag chr3L:3071821-3071941 23 4.56e-05 ttttcgttcc cttcccct ttgcgtcctc chr3L:10776809-10776929 22 7.47e-05 TTGCCCTGAT TTTCCCCG CCCCTTCGAA chr2R:22245054-22245174 44 7.47e-05 ACTGTTTACC TTTCCCCG TTCGGTGTGC chr2R:6971041-6971161 67 7.47e-05 TTCTCCCGTT ATTCCCCT CTATTTCCTC chr3R:13304816-13304936 40 7.47e-05 GATTCTCGCG ATTCCCCT TTCTTTTCGC chr2L:18106293-18106413 59 7.47e-05 GTCTTTTCCC ATTCCCCT GCACAAATAT chr3R:16501194-16501314 90 7.47e-05 GACAATTTGA TTTCCCCG ACGGGTTCAC chr3L:9903086-9903206 33 7.47e-05 CAGGGGAAAC TTTCCCCG TTTTAGACCC chr3R:11330852-11330972 7 7.47e-05 GCTGGC TTTCCCCG CTTCCACAAC chr3L:17254346-17254466 99 8.79e-05 GTAAAGGTCT GTTCCCCT GAAACATGCA chrX:2551984-2552104 44 8.79e-05 TTAGCATTGT GTTCCCCT TGCTATTTTT chr3L:10322020-10322140 2 8.79e-05 A GTTCCCCT CTTTTCGCAA chrX:1904122-1904242 35 8.79e-05 CGTTATCTAA GTTCCCCT CCTCTCGCGC chr3R:20991087-20991207 39 1.01e-04 TAAAACTTTG TTTCCCCC TTTTTCGGGA chr3L:8738955-8739075 48 1.01e-04 AATCGAATAA TTTCCCCC TTGGGGCCTT chr2L:17328003-17328123 23 1.17e-04 CTGGAATGTC TTACCCCT AAGAAGAGTT chr4:389053-389173 63 1.17e-04 TGAAAGAAAT TTACCCCT ATTTAGATGC chr3R:10311215-10311335 55 1.17e-04 TCTTAGCGTC TTACCCCT TAAAAACGCA chr2L:6412092-6412212 56 1.17e-04 TTTCCCGTTA TTACCCCT GATAAAGCTA chr3R:18160456-18160576 89 1.50e-04 ACTGCGAAAA CTTCCCCA TTTTTTCCGG chr2R:8288916-8289036 29 1.50e-04 GGAAAAGCCA TTTCTCCT GCTCTGCCGC chrX:5905342-5905462 34 1.50e-04 CTTTCTGTGC TTTCTCCT TTGATTCTTG chr2L:13349376-13349496 3 1.50e-04 GA CTTCCCCA GCTGCTATAA chrX:10070464-10070584 10 1.50e-04 GATTTCTAC TTTCTCCT ATTTTATCCC chr2L:16042811-16042931 10 1.50e-04 TCGCCAGAT TTTCTCCT GCCAGCGATT chr3R:26606682-26606802 30 1.63e-04 GTACAAAACA TTGCCCCT TCGAGGGCCA chr3R:18698994-18699114 52 1.63e-04 ACCACAGTGC TTGCCCCT GATTTCCAAG chr3R:11334412-11334532 14 1.63e-04 GCAGCGCTGC TTGCCCCT CCATGAACGA chr3R:14021349-14021469 63 1.63e-04 AGGCACGGCA TTGCCCCT GAATTTTAAT chr2R:13550223-13550343 102 1.90e-04 GTGGGATACG ATTCCCCA GAATCGCATT chr3L:16807329-16807449 67 1.90e-04 CGTTTTTCAT ATTCCCCA TCCTATACCC chr3R:28801961-28802081 69 1.90e-04 ATTTCGAAAA CTTCCCCG TTAGCAGGGG chr3R:8935069-8935189 97 1.90e-04 TCACAAGTGA ATTCCCCA GCAAACCGAT chr3L:19079220-19079340 25 2.03e-04 GTTGATTTCT GTTCCCCA TTCCATGTGC chr3L:20348793-20348913 75 2.14e-04 CCCTTCTTAA CTTCCCCC CTCCCAGCCT chr2L:395675-395795 42 2.42e-04 CTCTGTTACA TTACCCCA TTAAACTTGC chr3L:7772259-7772379 9 2.42e-04 CCATAACT CTACCCCT CTCTGTAATC chr3L:12788498-12788618 12 2.42e-04 TTAGTTAGGG CTACCCCT TATATAGGAT chr3R:18089492-18089612 5 2.78e-04 ttcc tttctcca cctgcaccct chrX:4909641-4909761 78 2.78e-04 GTGCATCCTC CTTCTCCT GCTCCCCATC chr3L:3461677-3461797 101 2.78e-04 TCGTTTGCTT TTTCTCCA TTCAAACTGT chrX:11894293-11894413 22 2.78e-04 TGCGATTTCG CTTCTCCT CGCATGTAAC chr3R:22727581-22727701 55 3.14e-04 ATTTGGCCGT TTGCCCCA ATTTTGCCTG chr2R:20998799-20998919 57 3.54e-04 AGCCAACGTC ATTCCCCC GCCCACCTGC chrX:11679958-11680078 10 3.54e-04 TTATCGCAT TTTCCGCT CATTATGGCA chrX:1774384-1774504 13 3.54e-04 AATAGGAGCA ATTCCCCC CGATAAGTGC chr2L:19164752-19164872 32 3.54e-04 TTTTGTCTCT TTTCCGCT GCCGCCTTTG chrX:15465469-15465589 47 3.94e-04 CCCGTAACCC GTTCCCCC CGGCGAGTGG chr3R:18731402-18731522 16 3.94e-04 GAACTTGTTT ATACCCCT ACTGTCAGCG chr3L:7911214-7911334 112 3.94e-04 GAATGTGGTT TTACCCCG T chr3L:17813154-17813274 91 3.94e-04 TGGGTTTAGA ATACCCCT TCTTCTCAAG chr3R:8935275-8935395 71 4.55e-04 TAAGGTCCGA TTTCTCCG CATGCGGCGA chrX:7967490-7967610 100 5.35e-04 TACGCTGTCC TTTCTCCC ACGAAACTAT chr2R:8568410-8568530 33 5.35e-04 CAACTGATAT TGTCCCCT CTTTTCAGCA chr3L:4556970-4557090 18 5.35e-04 GGAGTTCCGT GTGCCCCT TTCGGCATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20720238-20720358 1.6e-05 45_[+1]_67 chr3R:11759353-11759473 1.6e-05 65_[+1]_47 chr3L:9907811-9907931 1.6e-05 77_[+1]_35 chrX:8049418-8049538 1.6e-05 38_[+1]_74 chr3R:27603945-27604065 1.6e-05 66_[+1]_46 chr3L:20885352-20885472 1.6e-05 106_[+1]_6 chr3L:9927275-9927395 1.6e-05 54_[+1]_58 chr2L:16198269-16198389 1.6e-05 28_[+1]_84 chr2R:11172220-11172340 1.6e-05 44_[+1]_68 chr3L:4840666-4840786 1.6e-05 55_[+1]_57 chrX:12988168-12988288 1.6e-05 29_[+1]_83 chr3L:10246479-10246599 1.6e-05 53_[+1]_59 chr3L:13674372-13674492 1.6e-05 55_[+1]_57 chr4:425067-425187 1.6e-05 111_[+1]_1 chr2L:15752152-15752272 1.6e-05 58_[+1]_54 chr4:1318969-1319089 1.6e-05 81_[+1]_31 chr3L:805182-805302 1.6e-05 89_[+1]_23 chrX:7445166-7445286 1.6e-05 53_[+1]_59 chr2L:19590749-19590869 1.6e-05 85_[+1]_27 chr3R:28874883-28875003 1.6e-05 80_[+1]_32 chrX:5885691-5885811 1.6e-05 36_[+1]_76 chr2L:13349642-13349762 1.6e-05 97_[+1]_15 chrX:17611596-17611716 1.6e-05 9_[+1]_103 chr3L:489493-489613 1.6e-05 28_[+1]_84 chrX:10479401-10479521 1.6e-05 72_[+1]_40 chr4:1306496-1306616 1.6e-05 93_[+1]_19 chr3R:25056805-25056925 4.6e-05 37_[+1]_75 chr2R:10383509-10383629 4.6e-05 64_[+1]_48 chrX:3470607-3470727 4.6e-05 73_[+1]_39 chr3L:6216831-6216951 4.6e-05 43_[+1]_69 chr3L:748974-749094 4.6e-05 81_[+1]_31 chrX:11922780-11922900 4.6e-05 52_[+1]_60 chrX:22480777-22480897 4.6e-05 66_[+1]_46 chrX:7298415-7298535 4.6e-05 73_[+1]_39 chr3R:18547126-18547246 4.6e-05 70_[+1]_42 chr3L:4574568-4574688 4.6e-05 87_[+1]_25 chrX:14951485-14951605 4.6e-05 101_[+1]_11 chr3R:8698015-8698135 4.6e-05 71_[+1]_41 chrX:16063481-16063601 4.6e-05 85_[+1]_27 chr2R:1591589-1591709 4.6e-05 47_[+1]_65 chr3L:3071821-3071941 4.6e-05 22_[+1]_90 chr3L:10776809-10776929 7.5e-05 21_[+1]_91 chr2R:22245054-22245174 7.5e-05 43_[+1]_69 chr2R:6971041-6971161 7.5e-05 66_[+1]_46 chr3R:13304816-13304936 7.5e-05 39_[+1]_73 chr2L:18106293-18106413 7.5e-05 58_[+1]_54 chr3R:16501194-16501314 7.5e-05 89_[+1]_23 chr3L:9903086-9903206 7.5e-05 32_[+1]_80 chr3R:11330852-11330972 7.5e-05 6_[+1]_106 chr3L:17254346-17254466 8.8e-05 98_[+1]_14 chrX:2551984-2552104 8.8e-05 43_[+1]_69 chr3L:10322020-10322140 8.8e-05 1_[+1]_111 chrX:1904122-1904242 8.8e-05 34_[+1]_78 chr3R:20991087-20991207 0.0001 38_[+1]_74 chr3L:8738955-8739075 0.0001 47_[+1]_65 chr2L:17328003-17328123 0.00012 22_[+1]_90 chr4:389053-389173 0.00012 62_[+1]_50 chr3R:10311215-10311335 0.00012 54_[+1]_58 chr2L:6412092-6412212 0.00012 55_[+1]_57 chr3R:18160456-18160576 0.00015 88_[+1]_24 chr2R:8288916-8289036 0.00015 28_[+1]_84 chrX:5905342-5905462 0.00015 33_[+1]_79 chr2L:13349376-13349496 0.00015 2_[+1]_110 chrX:10070464-10070584 0.00015 9_[+1]_103 chr2L:16042811-16042931 0.00015 9_[+1]_103 chr3R:26606682-26606802 0.00016 29_[+1]_83 chr3R:18698994-18699114 0.00016 51_[+1]_61 chr3R:11334412-11334532 0.00016 13_[+1]_99 chr3R:14021349-14021469 0.00016 62_[+1]_50 chr2R:13550223-13550343 0.00019 101_[+1]_11 chr3L:16807329-16807449 0.00019 66_[+1]_46 chr3R:28801961-28802081 0.00019 68_[+1]_44 chr3R:8935069-8935189 0.00019 96_[+1]_16 chr3L:19079220-19079340 0.0002 24_[+1]_88 chr3L:20348793-20348913 0.00021 74_[+1]_38 chr2L:395675-395795 0.00024 41_[+1]_71 chr3L:7772259-7772379 0.00024 8_[+1]_104 chr3L:12788498-12788618 0.00024 11_[+1]_101 chr3R:18089492-18089612 0.00028 4_[+1]_108 chrX:4909641-4909761 0.00028 77_[+1]_35 chr3L:3461677-3461797 0.00028 100_[+1]_12 chrX:11894293-11894413 0.00028 21_[+1]_91 chr3R:22727581-22727701 0.00031 54_[+1]_58 chr2R:20998799-20998919 0.00035 56_[+1]_56 chrX:11679958-11680078 0.00035 9_[+1]_103 chrX:1774384-1774504 0.00035 12_[+1]_100 chr2L:19164752-19164872 0.00035 31_[+1]_81 chrX:15465469-15465589 0.00039 46_[+1]_66 chr3R:18731402-18731522 0.00039 15_[+1]_97 chr3L:7911214-7911334 0.00039 111_[+1]_1 chr3L:17813154-17813274 0.00039 90_[+1]_22 chr3R:8935275-8935395 0.00045 70_[+1]_42 chrX:7967490-7967610 0.00053 99_[+1]_13 chr2R:8568410-8568530 0.00053 32_[+1]_80 chr3L:4556970-4557090 0.00053 17_[+1]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCCT width=8 seqs=95 chr2L:20720238-20720358 ( 46) TTTCCCCT 1 chr3R:11759353-11759473 ( 66) TTTCCCCT 1 chr3L:9907811-9907931 ( 78) TTTCCCCT 1 chrX:8049418-8049538 ( 39) TTTCCCCT 1 chr3R:27603945-27604065 ( 67) TTTCCCCT 1 chr3L:20885352-20885472 ( 107) TTTCCCCT 1 chr3L:9927275-9927395 ( 55) TTTCCCCT 1 chr2L:16198269-16198389 ( 29) TTTCCCCT 1 chr2R:11172220-11172340 ( 45) TTTCCCCT 1 chr3L:4840666-4840786 ( 56) TTTCCCCT 1 chrX:12988168-12988288 ( 30) TTTCCCCT 1 chr3L:10246479-10246599 ( 54) TTTCCCCT 1 chr3L:13674372-13674492 ( 56) TTTCCCCT 1 chr4:425067-425187 ( 112) TTTCCCCT 1 chr2L:15752152-15752272 ( 59) TTTCCCCT 1 chr4:1318969-1319089 ( 82) TTTCCCCT 1 chr3L:805182-805302 ( 90) TTTCCCCT 1 chrX:7445166-7445286 ( 54) TTTCCCCT 1 chr2L:19590749-19590869 ( 86) TTTCCCCT 1 chr3R:28874883-28875003 ( 81) TTTCCCCT 1 chrX:5885691-5885811 ( 37) TTTCCCCT 1 chr2L:13349642-13349762 ( 98) TTTCCCCT 1 chrX:17611596-17611716 ( 10) TTTCCCCT 1 chr3L:489493-489613 ( 29) TTTCCCCT 1 chrX:10479401-10479521 ( 73) TTTCCCCT 1 chr4:1306496-1306616 ( 94) TTTCCCCT 1 chr3R:25056805-25056925 ( 38) TTTCCCCA 1 chr2R:10383509-10383629 ( 65) TTTCCCCA 1 chrX:3470607-3470727 ( 74) CTTCCCCT 1 chr3L:6216831-6216951 ( 44) CTTCCCCT 1 chr3L:748974-749094 ( 82) CTTCCCCT 1 chrX:11922780-11922900 ( 53) TTTCCCCA 1 chrX:22480777-22480897 ( 67) CTTCCCCT 1 chrX:7298415-7298535 ( 74) CTTCCCCT 1 chr3R:18547126-18547246 ( 71) TTTCCCCA 1 chr3L:4574568-4574688 ( 88) TTTCCCCA 1 chrX:14951485-14951605 ( 102) CTTCCCCT 1 chr3R:8698015-8698135 ( 72) TTTCCCCA 1 chrX:16063481-16063601 ( 86) TTTCCCCA 1 chr2R:1591589-1591709 ( 48) TTTCCCCA 1 chr3L:3071821-3071941 ( 23) CTTCCCCT 1 chr3L:10776809-10776929 ( 22) TTTCCCCG 1 chr2R:22245054-22245174 ( 44) TTTCCCCG 1 chr2R:6971041-6971161 ( 67) ATTCCCCT 1 chr3R:13304816-13304936 ( 40) ATTCCCCT 1 chr2L:18106293-18106413 ( 59) ATTCCCCT 1 chr3R:16501194-16501314 ( 90) TTTCCCCG 1 chr3L:9903086-9903206 ( 33) TTTCCCCG 1 chr3R:11330852-11330972 ( 7) TTTCCCCG 1 chr3L:17254346-17254466 ( 99) GTTCCCCT 1 chrX:2551984-2552104 ( 44) GTTCCCCT 1 chr3L:10322020-10322140 ( 2) GTTCCCCT 1 chrX:1904122-1904242 ( 35) GTTCCCCT 1 chr3R:20991087-20991207 ( 39) TTTCCCCC 1 chr3L:8738955-8739075 ( 48) TTTCCCCC 1 chr2L:17328003-17328123 ( 23) TTACCCCT 1 chr4:389053-389173 ( 63) TTACCCCT 1 chr3R:10311215-10311335 ( 55) TTACCCCT 1 chr2L:6412092-6412212 ( 56) TTACCCCT 1 chr3R:18160456-18160576 ( 89) CTTCCCCA 1 chr2R:8288916-8289036 ( 29) TTTCTCCT 1 chrX:5905342-5905462 ( 34) TTTCTCCT 1 chr2L:13349376-13349496 ( 3) CTTCCCCA 1 chrX:10070464-10070584 ( 10) TTTCTCCT 1 chr2L:16042811-16042931 ( 10) TTTCTCCT 1 chr3R:26606682-26606802 ( 30) TTGCCCCT 1 chr3R:18698994-18699114 ( 52) TTGCCCCT 1 chr3R:11334412-11334532 ( 14) TTGCCCCT 1 chr3R:14021349-14021469 ( 63) TTGCCCCT 1 chr2R:13550223-13550343 ( 102) ATTCCCCA 1 chr3L:16807329-16807449 ( 67) ATTCCCCA 1 chr3R:28801961-28802081 ( 69) CTTCCCCG 1 chr3R:8935069-8935189 ( 97) ATTCCCCA 1 chr3L:19079220-19079340 ( 25) GTTCCCCA 1 chr3L:20348793-20348913 ( 75) CTTCCCCC 1 chr2L:395675-395795 ( 42) TTACCCCA 1 chr3L:7772259-7772379 ( 9) CTACCCCT 1 chr3L:12788498-12788618 ( 12) CTACCCCT 1 chr3R:18089492-18089612 ( 5) TTTCTCCA 1 chrX:4909641-4909761 ( 78) CTTCTCCT 1 chr3L:3461677-3461797 ( 101) TTTCTCCA 1 chrX:11894293-11894413 ( 22) CTTCTCCT 1 chr3R:22727581-22727701 ( 55) TTGCCCCA 1 chr2R:20998799-20998919 ( 57) ATTCCCCC 1 chrX:11679958-11680078 ( 10) TTTCCGCT 1 chrX:1774384-1774504 ( 13) ATTCCCCC 1 chr2L:19164752-19164872 ( 32) TTTCCGCT 1 chrX:15465469-15465589 ( 47) GTTCCCCC 1 chr3R:18731402-18731522 ( 16) ATACCCCT 1 chr3L:7911214-7911334 ( 112) TTACCCCG 1 chr3L:17813154-17813274 ( 91) ATACCCCT 1 chr3R:8935275-8935395 ( 71) TTTCTCCG 1 chrX:7967490-7967610 ( 100) TTTCTCCC 1 chr2R:8568410-8568530 ( 33) TGTCCCCT 1 chr3L:4556970-4557090 ( 18) GTGCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.30471 E= 1.4e-046 -135 -55 -161 126 -1321 -1321 -441 184 -135 -1321 -183 159 -1321 212 -1321 -1321 -1321 196 -1321 -139 -1321 209 -341 -1321 -1321 212 -1321 -1321 -50 -164 -142 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 1.4e-046 0.105263 0.157895 0.073684 0.663158 0.000000 0.000000 0.010526 0.989474 0.105263 0.000000 0.063158 0.831579 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.105263 0.000000 0.978947 0.021053 0.000000 0.000000 1.000000 0.000000 0.000000 0.189474 0.073684 0.084211 0.652632 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCCT MEME-1 regular expression -------------------------------------------------------------------------------- TTTCCCCT -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGAAA MEME-2 width = 8 sites = 69 llr = 585 E-value = 8.4e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::1:a96 pos.-specific C :::::::1 probability G :aa9a:12 matrix T 2::::::1 bits 2.2 * * 1.9 ** * 1.7 ** * 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGGGAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4203860-4203980 57 1.34e-05 CACGTAGTGC AGGGGAAA TATGGTAGGA chr2R:22245054-22245174 93 1.34e-05 CGATCCCCAA AGGGGAAA ACTGGGAACT chr3R:21043659-21043779 23 1.34e-05 ACAGTTGGCC AGGGGAAA TGGCCCAGGT chr3R:18160456-18160576 52 1.34e-05 AATTTTCCAA AGGGGAAA ATGTTCTCTC chrX:6875184-6875304 26 1.34e-05 tatatacaAA AGGGGAAA CATACAAATC chr2R:16896803-16896923 66 1.34e-05 GGAAAAATGG AGGGGAAA ATTGTTTGGC chr3R:24016518-24016638 49 1.34e-05 GAAAAATAGG AGGGGAAA AATGAGCGAA chr3R:5365270-5365390 79 1.34e-05 AATGACATGG AGGGGAAA TGCTCTAGAT chr3L:8738955-8739075 103 1.34e-05 CCGCTTTGGC AGGGGAAA CGAAAACCTT chr3R:31938459-31938579 82 1.34e-05 CCCCCAAATG AGGGGAAA TCGCCGAATA chr3L:9903086-9903206 24 1.34e-05 AGCTTTTCGC AGGGGAAA CTTTCCCCGT chr3L:7911009-7911129 83 1.34e-05 AGGGAGAGTG AGGGGAAA CGATGATGAA chr3L:18896444-18896564 97 1.34e-05 ACTCTGTGGG AGGGGAAA TGAGAGGATC chr3L:18957191-18957311 90 1.34e-05 GCTCTAGCGG AGGGGAAA GTACATGGTC chr2R:16431748-16431868 54 1.34e-05 CGACTGTAGA AGGGGAAA CAAGGGAAAC chr2L:16539061-16539181 73 1.34e-05 GAAAAAAAAG AGGGGAAA TGCCGAAAAA chr2R:16901664-16901784 77 1.34e-05 TCTTTTCGGA AGGGGAAA TCCTTTTGTG chr3R:9159052-9159172 58 1.34e-05 ACATAAAAAA AGGGGAAA AGGTAGAAGT chrX:11987751-11987871 104 1.34e-05 AAAATGAGAG AGGGGAAA TTGATCCTT chr3R:25438492-25438612 39 1.34e-05 GGCGATTTTG AGGGGAAA TGTGAGTGGT chrX:17611596-17611716 39 1.34e-05 CCTGCGAGCG AGGGGAAA CTTATCCGCG chrX:5433021-5433141 43 1.34e-05 TCAGCTGCGG AGGGGAAA GCCTGACAAT chr2R:25279936-25280056 59 1.34e-05 aatggaggag aggggaaa tttcccttag chr2R:18760713-18760833 10 2.46e-05 AGGAAAAGT AGGGGAAG CAGAGCGAAA chr3R:16501194-16501314 26 2.46e-05 AGCCTGCTCG AGGGGAAG TTACGTTTAT chr2L:2800044-2800164 81 2.46e-05 GAAATCTCGG AGGGGAAG ACTTTAGGCC chrX:5637720-5637840 97 2.46e-05 GATAGGATGC AGGGGAAG TATATCCTTT chr2L:18156049-18156169 1 2.46e-05 . AGGGGAAG ATTGTTTCGC chrX:15465469-15465589 62 4.99e-05 CCCCGGCGAG TGGGGAAA CGTAGTCGCG chrX:19510381-19510501 73 4.99e-05 TTTATATGGA AGGGGAAC GCTTTATTCT chr3R:13434409-13434529 14 4.99e-05 TCACCTCGGC TGGGGAAA AAAGACAGCG chrX:9035362-9035482 106 4.99e-05 CGCCAAACAA AGGGGAAC GGGCGAA chr2R:24927394-24927514 85 4.99e-05 GCGCTTCTGG AGGGGAAC GGAAGCCCTG chr2R:22059044-22059164 82 4.99e-05 CGGTTGAAAG TGGGGAAA AGCGATGTTT chrX:13821563-13821683 42 4.99e-05 GCAAGGCGAA AGGGGAAC GTCGGCGAGA chrX:13374276-13374396 82 4.99e-05 TGATTCGTGC TGGGGAAA TCGAGAAGGA chr3R:7394316-7394436 54 9.09e-05 CGATTTCAAA AGGAGAAA TAATGGTAAC chrX:5745550-5745670 112 9.09e-05 GGGGCGATGG AGGAGAAA A chr3L:1529236-1529356 105 9.09e-05 AATAAGGTGA AGGGGAAT AAGGTGAA chr3R:11947647-11947767 107 9.09e-05 ACACATTCAG AGGGGAGA AGAGAA chr3L:3926330-3926450 48 9.09e-05 GTGTTCTTGA AGGGGAAT TTACGAAGCG chrX:19260523-19260643 5 9.09e-05 GATC AGGAGAAA TGTTGATCAG chrX:16063481-16063601 97 9.09e-05 TTCCCCAACT AGGGGAGA TGTCCCGAGC chrX:8569164-8569284 62 1.02e-04 CATAGAAAGT TGGGGAAG ACGGGGCAAT chr3R:23181853-23181973 15 1.02e-04 GTCAGCTGCT TGGGGAAG AGTCCCTTAC chr3R:13042741-13042861 4 1.14e-04 AAT GGGGGAAA CGCCAAAGTA chrX:13358423-13358543 5 1.14e-04 AGTT GGGGGAAA GTAGCCGAAG chr3L:6979355-6979475 104 1.14e-04 ATTCGCAAAG GGGGGAAA TACCGGAAT chrX:13284327-13284447 110 1.36e-04 aagcagaagt aggagaag aaa chrX:618106-618226 76 1.36e-04 TGCCGTTCGT AGGAGAAG AGGTTCGGTT chr2R:21161119-21161239 21 1.36e-04 GAGTCAGATG AGGGGAGG GATATTAGGT chr4:1318969-1319089 112 1.36e-04 aggtggatgg aggagaag g chr2R:12120404-12120524 22 1.36e-04 GAATCGGGAA AGGGGAGG ACGCAGAGCC chr3R:11330852-11330972 25 1.36e-04 CTTCCACAAC AGGAGAAG TGCATTGCAG chr4:1306496-1306616 82 1.36e-04 tggtgggtgg aggagaag gcaatttccc chr2R:13550223-13550343 80 1.48e-04 AGAAAAACAT TGGGGAAC ATTGGTGGGA chrX:546491-546611 74 2.37e-04 AAATGATAAC TGGGGAGA CCGAAGGGCA chr2R:6648658-6648778 62 2.37e-04 ACCGTGAAAG TGGGGAAT CGAAGATAGA chr2L:3144037-3144157 83 2.37e-04 TAACGGTTGC TGGGGAAT CGATTCGCCG chr3R:8306315-8306435 83 2.37e-04 CTGAATAGAG AGGGGTAA GCTGGCTGTT chrX:12662024-12662144 95 2.37e-04 TAAAAACGAG AGGGGAGC AAAGTAAGAG chrX:7298415-7298535 33 2.37e-04 GGTAGTGCAG TGGGGAAT GTGGAAATGC chrX:7338055-7338175 64 2.37e-04 AAGTGGTGGA AGGAGAAC TGTAAATAGT chrX:22481556-22481676 61 2.37e-04 GAATAAAGTT AGGGGTAA AAATTACTTG chr2R:7955312-7955432 101 2.37e-04 GGTGGTGACA TGGAGAAA TTACCGGCGC chr2L:20720238-20720358 17 2.53e-04 GCAGAGCGGC AGAGGAAA AACACCGGCC chr3R:11759353-11759473 9 2.53e-04 TAAAATGT AGAGGAAA CTTGGAACTA chr2L:20230154-20230274 109 2.94e-04 TTTTCCATTG AGGGGAGT GATG chr3L:439683-439803 65 4.19e-04 CGGCTCGAAG AGGGGCAG CGTTGCTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4203860-4203980 1.3e-05 56_[+2]_56 chr2R:22245054-22245174 1.3e-05 92_[+2]_20 chr3R:21043659-21043779 1.3e-05 22_[+2]_90 chr3R:18160456-18160576 1.3e-05 51_[+2]_61 chrX:6875184-6875304 1.3e-05 25_[+2]_87 chr2R:16896803-16896923 1.3e-05 65_[+2]_47 chr3R:24016518-24016638 1.3e-05 48_[+2]_64 chr3R:5365270-5365390 1.3e-05 78_[+2]_34 chr3L:8738955-8739075 1.3e-05 102_[+2]_10 chr3R:31938459-31938579 1.3e-05 81_[+2]_31 chr3L:9903086-9903206 1.3e-05 23_[+2]_89 chr3L:7911009-7911129 1.3e-05 82_[+2]_30 chr3L:18896444-18896564 1.3e-05 96_[+2]_16 chr3L:18957191-18957311 1.3e-05 89_[+2]_23 chr2R:16431748-16431868 1.3e-05 53_[+2]_59 chr2L:16539061-16539181 1.3e-05 72_[+2]_40 chr2R:16901664-16901784 1.3e-05 76_[+2]_36 chr3R:9159052-9159172 1.3e-05 57_[+2]_55 chrX:11987751-11987871 1.3e-05 103_[+2]_9 chr3R:25438492-25438612 1.3e-05 38_[+2]_74 chrX:17611596-17611716 1.3e-05 38_[+2]_74 chrX:5433021-5433141 1.3e-05 42_[+2]_70 chr2R:25279936-25280056 1.3e-05 58_[+2]_54 chr2R:18760713-18760833 2.5e-05 9_[+2]_103 chr3R:16501194-16501314 2.5e-05 25_[+2]_87 chr2L:2800044-2800164 2.5e-05 80_[+2]_32 chrX:5637720-5637840 2.5e-05 96_[+2]_16 chr2L:18156049-18156169 2.5e-05 [+2]_112 chrX:15465469-15465589 5e-05 61_[+2]_51 chrX:19510381-19510501 5e-05 72_[+2]_40 chr3R:13434409-13434529 5e-05 13_[+2]_99 chrX:9035362-9035482 5e-05 105_[+2]_7 chr2R:24927394-24927514 5e-05 84_[+2]_28 chr2R:22059044-22059164 5e-05 81_[+2]_31 chrX:13821563-13821683 5e-05 41_[+2]_71 chrX:13374276-13374396 5e-05 81_[+2]_31 chr3R:7394316-7394436 9.1e-05 53_[+2]_59 chrX:5745550-5745670 9.1e-05 111_[+2]_1 chr3L:1529236-1529356 9.1e-05 104_[+2]_8 chr3R:11947647-11947767 9.1e-05 106_[+2]_6 chr3L:3926330-3926450 9.1e-05 47_[+2]_65 chrX:19260523-19260643 9.1e-05 4_[+2]_108 chrX:16063481-16063601 9.1e-05 96_[+2]_16 chrX:8569164-8569284 0.0001 61_[+2]_51 chr3R:23181853-23181973 0.0001 14_[+2]_98 chr3R:13042741-13042861 0.00011 3_[+2]_109 chrX:13358423-13358543 0.00011 4_[+2]_108 chr3L:6979355-6979475 0.00011 103_[+2]_9 chrX:13284327-13284447 0.00014 109_[+2]_3 chrX:618106-618226 0.00014 75_[+2]_37 chr2R:21161119-21161239 0.00014 20_[+2]_92 chr4:1318969-1319089 0.00014 111_[+2]_1 chr2R:12120404-12120524 0.00014 21_[+2]_91 chr3R:11330852-11330972 0.00014 24_[+2]_88 chr4:1306496-1306616 0.00014 81_[+2]_31 chr2R:13550223-13550343 0.00015 79_[+2]_33 chrX:546491-546611 0.00024 73_[+2]_39 chr2R:6648658-6648778 0.00024 61_[+2]_51 chr2L:3144037-3144157 0.00024 82_[+2]_30 chr3R:8306315-8306435 0.00024 82_[+2]_30 chrX:12662024-12662144 0.00024 94_[+2]_18 chrX:7298415-7298535 0.00024 32_[+2]_80 chrX:7338055-7338175 0.00024 63_[+2]_49 chrX:22481556-22481676 0.00024 60_[+2]_52 chr2R:7955312-7955432 0.00024 100_[+2]_12 chr2L:20720238-20720358 0.00025 16_[+2]_96 chr3R:11759353-11759473 0.00025 8_[+2]_104 chr2L:20230154-20230274 0.00029 108_[+2]_4 chr3L:439683-439803 0.00042 64_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGAAA width=8 seqs=69 chrX:4203860-4203980 ( 57) AGGGGAAA 1 chr2R:22245054-22245174 ( 93) AGGGGAAA 1 chr3R:21043659-21043779 ( 23) AGGGGAAA 1 chr3R:18160456-18160576 ( 52) AGGGGAAA 1 chrX:6875184-6875304 ( 26) AGGGGAAA 1 chr2R:16896803-16896923 ( 66) AGGGGAAA 1 chr3R:24016518-24016638 ( 49) AGGGGAAA 1 chr3R:5365270-5365390 ( 79) AGGGGAAA 1 chr3L:8738955-8739075 ( 103) AGGGGAAA 1 chr3R:31938459-31938579 ( 82) AGGGGAAA 1 chr3L:9903086-9903206 ( 24) AGGGGAAA 1 chr3L:7911009-7911129 ( 83) AGGGGAAA 1 chr3L:18896444-18896564 ( 97) AGGGGAAA 1 chr3L:18957191-18957311 ( 90) AGGGGAAA 1 chr2R:16431748-16431868 ( 54) AGGGGAAA 1 chr2L:16539061-16539181 ( 73) AGGGGAAA 1 chr2R:16901664-16901784 ( 77) AGGGGAAA 1 chr3R:9159052-9159172 ( 58) AGGGGAAA 1 chrX:11987751-11987871 ( 104) AGGGGAAA 1 chr3R:25438492-25438612 ( 39) AGGGGAAA 1 chrX:17611596-17611716 ( 39) AGGGGAAA 1 chrX:5433021-5433141 ( 43) AGGGGAAA 1 chr2R:25279936-25280056 ( 59) AGGGGAAA 1 chr2R:18760713-18760833 ( 10) AGGGGAAG 1 chr3R:16501194-16501314 ( 26) AGGGGAAG 1 chr2L:2800044-2800164 ( 81) AGGGGAAG 1 chrX:5637720-5637840 ( 97) AGGGGAAG 1 chr2L:18156049-18156169 ( 1) AGGGGAAG 1 chrX:15465469-15465589 ( 62) TGGGGAAA 1 chrX:19510381-19510501 ( 73) AGGGGAAC 1 chr3R:13434409-13434529 ( 14) TGGGGAAA 1 chrX:9035362-9035482 ( 106) AGGGGAAC 1 chr2R:24927394-24927514 ( 85) AGGGGAAC 1 chr2R:22059044-22059164 ( 82) TGGGGAAA 1 chrX:13821563-13821683 ( 42) AGGGGAAC 1 chrX:13374276-13374396 ( 82) TGGGGAAA 1 chr3R:7394316-7394436 ( 54) AGGAGAAA 1 chrX:5745550-5745670 ( 112) AGGAGAAA 1 chr3L:1529236-1529356 ( 105) AGGGGAAT 1 chr3R:11947647-11947767 ( 107) AGGGGAGA 1 chr3L:3926330-3926450 ( 48) AGGGGAAT 1 chrX:19260523-19260643 ( 5) AGGAGAAA 1 chrX:16063481-16063601 ( 97) AGGGGAGA 1 chrX:8569164-8569284 ( 62) TGGGGAAG 1 chr3R:23181853-23181973 ( 15) TGGGGAAG 1 chr3R:13042741-13042861 ( 4) GGGGGAAA 1 chrX:13358423-13358543 ( 5) GGGGGAAA 1 chr3L:6979355-6979475 ( 104) GGGGGAAA 1 chrX:13284327-13284447 ( 110) AGGAGAAG 1 chrX:618106-618226 ( 76) AGGAGAAG 1 chr2R:21161119-21161239 ( 21) AGGGGAGG 1 chr4:1318969-1319089 ( 112) AGGAGAAG 1 chr2R:12120404-12120524 ( 22) AGGGGAGG 1 chr3R:11330852-11330972 ( 25) AGGAGAAG 1 chr4:1306496-1306616 ( 82) AGGAGAAG 1 chr2R:13550223-13550343 ( 80) TGGGGAAC 1 chrX:546491-546611 ( 74) TGGGGAGA 1 chr2R:6648658-6648778 ( 62) TGGGGAAT 1 chr2L:3144037-3144157 ( 83) TGGGGAAT 1 chr3R:8306315-8306435 ( 83) AGGGGTAA 1 chrX:12662024-12662144 ( 95) AGGGGAGC 1 chrX:7298415-7298535 ( 33) TGGGGAAT 1 chrX:7338055-7338175 ( 64) AGGAGAAC 1 chrX:22481556-22481676 ( 61) AGGGGTAA 1 chr2R:7955312-7955432 ( 101) TGGAGAAA 1 chr2L:20720238-20720358 ( 17) AGAGGAAA 1 chr3R:11759353-11759473 ( 9) AGAGGAAA 1 chr2L:20230154-20230274 ( 109) AGGGGAGT 1 chr3L:439683-439803 ( 65) AGGGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.48383 E= 8.4e-032 154 -1275 -237 -67 -1275 -1275 215 -1275 -321 -1275 211 -1275 -89 -1275 193 -1275 -1275 -1275 215 -1275 183 -399 -1275 -325 174 -1275 -115 -1275 115 -118 -5 -167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 8.4e-032 0.782609 0.000000 0.043478 0.173913 0.000000 0.000000 1.000000 0.000000 0.028986 0.000000 0.971014 0.000000 0.144928 0.000000 0.855072 0.000000 0.000000 0.000000 1.000000 0.000000 0.956522 0.014493 0.000000 0.028986 0.898551 0.000000 0.101449 0.000000 0.594203 0.101449 0.217391 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGAAA MEME-2 regular expression -------------------------------------------------------------------------------- AGGGGAA[AG] -------------------------------------------------------------------------------- Time 14.11 secs. ******************************************************************************** ******************************************************************************** MOTIF WACMGTTA MEME-3 width = 8 sites = 50 llr = 393 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 58:3:::8 pos.-specific C ::a5:::: probability G :2::a::2 matrix T 5::2:aa: bits 2.2 * * 1.9 * ** 1.7 * *** 1.5 * *** Relative 1.3 ** *** Entropy 1.1 ** **** (11.3 bits) 0.9 ** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACCGTTA consensus A A G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3072963-3073083 68 3.58e-05 GTTTTTCGCT TACCGTTA CTTATTTTAA chr3R:22727581-22727701 102 3.58e-05 TATAGCAATT AACCGTTA TGATCCTGTT chrX:13281762-13281882 14 3.58e-05 CGGCTTTATA TACCGTTA TTCGCCAGCT chr2R:21161119-21161239 38 3.58e-05 GGATATTAGG TACCGTTA GTCACCAAAT chrX:3775279-3775399 33 3.58e-05 TTGGCAAGGC AACCGTTA GCTTGCATTT chr3R:20958867-20958987 55 3.58e-05 CTGCGCTGTT TACCGTTA AGCTCGCTCA chrX:8490412-8490532 81 3.58e-05 CAAATCGATA AACCGTTA ATCAAGTTTG chrX:19260523-19260643 77 3.58e-05 GCTACATCGT TACCGTTA TGGGCAATGC chr3L:439683-439803 42 3.58e-05 GTTCTGCATT TACCGTTA ATTAGCGGCT chr2R:7786342-7786462 39 3.58e-05 TGGGAGCTTA TACCGTTA TAAAGCCAAC chrX:1620049-1620169 31 3.58e-05 TCCCTCCTCC AACCGTTA AGTGCTTACA chr2R:7782027-7782147 103 3.58e-05 ATTGCTCGGT TACCGTTA CTTTTCGTCT chrX:3867926-3868046 69 3.58e-05 TGTCCGTTTT TACCGTTA GTTATTTCAC chr3R:13042741-13042861 99 7.76e-05 CATATCAGTT AACAGTTA ATTGGGTACG chrX:13358423-13358543 82 7.76e-05 GGAAAAGTAT AACAGTTA CGATATATGT chr3L:7911009-7911129 11 7.76e-05 TTACTCTCAC AACAGTTA GGGCGCCTCA chrX:10070464-10070584 36 7.76e-05 CCCTCACATT TACAGTTA CTCCTATCGC chr3R:23181853-23181973 53 7.76e-05 TACTACAAAA TACAGTTA CAGCCAATCA chr2L:16042811-16042931 46 7.76e-05 TCATCCGCTC AACAGTTA GAAGTAAATG chr3R:20991087-20991207 59 1.20e-04 TTTCGGGAAG AACTGTTA ACAGTTTTTA chr3R:8931184-8931304 105 1.20e-04 TGTTACTTCT TACTGTTA TTTATTGC chrX:4909641-4909761 108 1.20e-04 ATTCCTTATT TACTGTTA TAATG chr3L:16854742-16854862 41 1.20e-04 AACGTAAACG AACTGTTA ATTAtgtgtg chr3R:5322171-5322291 34 1.20e-04 GGGGAGCAGC AACTGTTA CTGTTTTATT chrX:4119691-4119811 8 1.20e-04 CCAAGCA TACTGTTA TCTCGTTCTG chr3R:10311215-10311335 23 1.20e-04 TTTGTGAATG AACTGTTA ATTACTGGGT chr3L:8913300-8913420 83 1.50e-04 TGCGCTACGG TACCGTTG CCTTTTGGGG chr2L:15271496-15271616 101 1.50e-04 TTAATACAAG AACCGTTG TTTTCGCACG chrX:15075601-15075721 48 1.80e-04 TCTCTATATG TGCCGTTA GGCGCGCCAA chr2R:11613057-11613177 62 1.80e-04 CTCCTGTATG TGCCGTTA TAATGATTTA chr3R:11947647-11947767 55 1.80e-04 CCTCGCAAAG TGCCGTTA TTCATTGACG chrX:8569164-8569284 81 1.80e-04 CGGGGCAATG AGCCGTTA GTAAGAATGA chrX:3369583-3369703 46 1.80e-04 CAATCTAGTG TGCCGTTA TAAAATCGCC chr3R:25638520-25638640 48 1.80e-04 GTTATAAAAC TGCCGTTA GTTTTTTTAT chr3R:21043659-21043779 12 2.15e-04 TCAGAATCGC AACAGTTG GCCAGGGGAA chr3R:21200702-21200822 53 2.15e-04 TGTTTTTATT TACAGTTG AAGGATTATT chr3R:12977932-12978052 40 2.15e-04 ATTGCCAGTT TACAGTTG CCAGATAAAT chr2R:7955312-7955432 40 2.15e-04 AGCGGTTATT TACAGTTG CTTTTGTTGT chr3L:9907811-9907931 4 2.51e-04 ACA AACTGTTG CTCGGGCTTT chr3R:26606682-26606802 3 2.51e-04 CA AACTGTTG CAGTTGCGAG chr3L:9927275-9927395 23 2.51e-04 ACCGACAACA AACTGTTG CTTCTCAGCT chrX:22481556-22481676 104 2.51e-04 ACAAAGCTGA TACTGTTG AAAAAAAAT chr2R:9293724-9293844 68 2.51e-04 GTGTGGCTGC AACTGTTG TTCTTCTTCC chrX:19498909-19499029 110 2.86e-04 CACCTTGATT AGCAGTTA TTC chr3R:18547126-18547246 6 2.86e-04 TTTAC AGCAGTTA ACTTTTTTCC chr2L:19164752-19164872 73 2.86e-04 ATTTTCGCTA TGCAGTTA TGTTGATGAG chrX:10891072-10891192 58 3.62e-04 GAAGGAGCTT CACCGTTA CATTACTACC chr2L:4185408-4185528 22 3.62e-04 CTAACAGCAT CACCGTTA CTTGTGTAAC chr2R:22059044-22059164 11 5.19e-04 CCCCTCTTTT AACCGTTT TCTCTTTGGG chr2R:6648658-6648778 45 5.54e-04 GAACCCGTGG AACCGTAA CCGTGAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3072963-3073083 3.6e-05 67_[+3]_45 chr3R:22727581-22727701 3.6e-05 101_[+3]_11 chrX:13281762-13281882 3.6e-05 13_[+3]_99 chr2R:21161119-21161239 3.6e-05 37_[+3]_75 chrX:3775279-3775399 3.6e-05 32_[+3]_80 chr3R:20958867-20958987 3.6e-05 54_[+3]_58 chrX:8490412-8490532 3.6e-05 80_[+3]_32 chrX:19260523-19260643 3.6e-05 76_[+3]_36 chr3L:439683-439803 3.6e-05 41_[+3]_71 chr2R:7786342-7786462 3.6e-05 38_[+3]_74 chrX:1620049-1620169 3.6e-05 30_[+3]_82 chr2R:7782027-7782147 3.6e-05 102_[+3]_10 chrX:3867926-3868046 3.6e-05 68_[+3]_44 chr3R:13042741-13042861 7.8e-05 98_[+3]_14 chrX:13358423-13358543 7.8e-05 81_[+3]_31 chr3L:7911009-7911129 7.8e-05 10_[+3]_102 chrX:10070464-10070584 7.8e-05 35_[+3]_77 chr3R:23181853-23181973 7.8e-05 52_[+3]_60 chr2L:16042811-16042931 7.8e-05 45_[+3]_67 chr3R:20991087-20991207 0.00012 58_[+3]_54 chr3R:8931184-8931304 0.00012 104_[+3]_8 chrX:4909641-4909761 0.00012 107_[+3]_5 chr3L:16854742-16854862 0.00012 40_[+3]_72 chr3R:5322171-5322291 0.00012 33_[+3]_79 chrX:4119691-4119811 0.00012 7_[+3]_105 chr3R:10311215-10311335 0.00012 22_[+3]_90 chr3L:8913300-8913420 0.00015 82_[+3]_30 chr2L:15271496-15271616 0.00015 100_[+3]_12 chrX:15075601-15075721 0.00018 47_[+3]_65 chr2R:11613057-11613177 0.00018 61_[+3]_51 chr3R:11947647-11947767 0.00018 54_[+3]_58 chrX:8569164-8569284 0.00018 80_[+3]_32 chrX:3369583-3369703 0.00018 45_[+3]_67 chr3R:25638520-25638640 0.00018 47_[+3]_65 chr3R:21043659-21043779 0.00022 11_[+3]_101 chr3R:21200702-21200822 0.00022 52_[+3]_60 chr3R:12977932-12978052 0.00022 39_[+3]_73 chr2R:7955312-7955432 0.00022 39_[+3]_73 chr3L:9907811-9907931 0.00025 3_[+3]_109 chr3R:26606682-26606802 0.00025 2_[+3]_110 chr3L:9927275-9927395 0.00025 22_[+3]_90 chrX:22481556-22481676 0.00025 103_[+3]_9 chr2R:9293724-9293844 0.00025 67_[+3]_45 chrX:19498909-19499029 0.00029 109_[+3]_3 chr3R:18547126-18547246 0.00029 5_[+3]_107 chr2L:19164752-19164872 0.00029 72_[+3]_40 chrX:10891072-10891192 0.00036 57_[+3]_55 chr2L:4185408-4185528 0.00036 21_[+3]_91 chr2R:22059044-22059164 0.00052 10_[+3]_102 chr2R:6648658-6648778 0.00055 44_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WACMGTTA width=8 seqs=50 chr3L:3072963-3073083 ( 68) TACCGTTA 1 chr3R:22727581-22727701 ( 102) AACCGTTA 1 chrX:13281762-13281882 ( 14) TACCGTTA 1 chr2R:21161119-21161239 ( 38) TACCGTTA 1 chrX:3775279-3775399 ( 33) AACCGTTA 1 chr3R:20958867-20958987 ( 55) TACCGTTA 1 chrX:8490412-8490532 ( 81) AACCGTTA 1 chrX:19260523-19260643 ( 77) TACCGTTA 1 chr3L:439683-439803 ( 42) TACCGTTA 1 chr2R:7786342-7786462 ( 39) TACCGTTA 1 chrX:1620049-1620169 ( 31) AACCGTTA 1 chr2R:7782027-7782147 ( 103) TACCGTTA 1 chrX:3867926-3868046 ( 69) TACCGTTA 1 chr3R:13042741-13042861 ( 99) AACAGTTA 1 chrX:13358423-13358543 ( 82) AACAGTTA 1 chr3L:7911009-7911129 ( 11) AACAGTTA 1 chrX:10070464-10070584 ( 36) TACAGTTA 1 chr3R:23181853-23181973 ( 53) TACAGTTA 1 chr2L:16042811-16042931 ( 46) AACAGTTA 1 chr3R:20991087-20991207 ( 59) AACTGTTA 1 chr3R:8931184-8931304 ( 105) TACTGTTA 1 chrX:4909641-4909761 ( 108) TACTGTTA 1 chr3L:16854742-16854862 ( 41) AACTGTTA 1 chr3R:5322171-5322291 ( 34) AACTGTTA 1 chrX:4119691-4119811 ( 8) TACTGTTA 1 chr3R:10311215-10311335 ( 23) AACTGTTA 1 chr3L:8913300-8913420 ( 83) TACCGTTG 1 chr2L:15271496-15271616 ( 101) AACCGTTG 1 chrX:15075601-15075721 ( 48) TGCCGTTA 1 chr2R:11613057-11613177 ( 62) TGCCGTTA 1 chr3R:11947647-11947767 ( 55) TGCCGTTA 1 chrX:8569164-8569284 ( 81) AGCCGTTA 1 chrX:3369583-3369703 ( 46) TGCCGTTA 1 chr3R:25638520-25638640 ( 48) TGCCGTTA 1 chr3R:21043659-21043779 ( 12) AACAGTTG 1 chr3R:21200702-21200822 ( 53) TACAGTTG 1 chr3R:12977932-12978052 ( 40) TACAGTTG 1 chr2R:7955312-7955432 ( 40) TACAGTTG 1 chr3L:9907811-9907931 ( 4) AACTGTTG 1 chr3R:26606682-26606802 ( 3) AACTGTTG 1 chr3L:9927275-9927395 ( 23) AACTGTTG 1 chrX:22481556-22481676 ( 104) TACTGTTG 1 chr2R:9293724-9293844 ( 68) AACTGTTG 1 chrX:19498909-19499029 ( 110) AGCAGTTA 1 chr3R:18547126-18547246 ( 6) AGCAGTTA 1 chr2L:19164752-19164872 ( 73) TGCAGTTA 1 chrX:10891072-10891192 ( 58) CACCGTTA 1 chr2L:4185408-4185528 ( 22) CACCGTTA 1 chr2R:22059044-22059164 ( 11) AACCGTTT 1 chr2R:6648658-6648778 ( 45) AACCGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.63034 E= 3.9e+003 78 -252 -1229 86 161 -1229 -32 -1229 -1229 212 -1229 -1229 -5 112 -1229 -20 -1229 -1229 215 -1229 -1229 -1229 -1229 186 -374 -1229 -1229 183 150 -1229 -3 -378 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 3.9e+003 0.460000 0.040000 0.000000 0.500000 0.820000 0.000000 0.180000 0.000000 0.000000 1.000000 0.000000 0.000000 0.260000 0.500000 0.000000 0.240000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.000000 0.000000 0.980000 0.760000 0.000000 0.220000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACMGTTA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]AC[CAT]GTT[AG] -------------------------------------------------------------------------------- Time 20.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGGG MEME-4 width = 8 sites = 2 llr = 24 E-value = 5.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::: probability G aa:aaaaa matrix T :::::::: bits 2.2 ** ***** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5322171-5322291 20 7.85e-06 TGAGCTTTTG GGAGGGGG AGCAGCAACT chrX:13821563-13821683 62 7.85e-06 CGGCGAGAGG GGAGGGGG CGGTGTGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5322171-5322291 7.9e-06 19_[+4]_93 chrX:13821563-13821683 7.9e-06 61_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGGG width=8 seqs=2 chr3R:5322171-5322291 ( 20) GGAGGGGG 1 chrX:13821563-13821683 ( 62) GGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.0e+004 -765 -765 215 -765 -765 -765 215 -765 189 -765 -765 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -765 -765 215 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-4 regular expression -------------------------------------------------------------------------------- GGAGGGGG -------------------------------------------------------------------------------- Time 26.44 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGTGD MEME-5 width = 8 sites = 16 llr = 154 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::3 pos.-specific C :::::::1 probability G :aaaa3a4 matrix T :::::7:3 bits 2.2 **** * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AGGGGTGG consensus G T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17850236-17850356 25 9.63e-06 GCAAAGAATA AGGGGTGG AAAAGCGAAG chr3L:8997301-8997421 88 9.63e-06 TTTAAGGGAG AGGGGTGG GGCTCCTGCG chrX:477290-477410 55 9.63e-06 CCTGTAATGG AGGGGTGG GAGATTGGAG chr3R:31938459-31938579 112 9.63e-06 ATTTGTTGTA AGGGGTGG T chr4:389053-389173 112 2.14e-05 TTCCCTCGAC AGGGGTGT T chr3L:8738955-8739075 67 2.14e-05 TGGGGCCTTG AGGGGTGT TTATTTTTTT chrX:1774384-1774504 87 2.14e-05 GTAGTGGATA AGGGGTGT TACGTAGCTA chr3R:28801961-28802081 82 2.14e-05 CCCCGTTAGC AGGGGTGT TTTGAGACTA chrX:5650122-5650242 70 2.93e-05 gggggggggg aggggggg TTTATGCCAT chr3L:4574568-4574688 44 2.93e-05 cgctGTGTGG AGGGGGGG GGGTACTAAA chrX:7338055-7338175 89 4.08e-05 AGTGAGGAAG AGGGGTGA ATACAGACAA chr2L:20230154-20230274 76 4.08e-05 TTTCTCAGTA AGGGGTGA AATGAAACCC chr2L:2195441-2195561 44 5.05e-05 AGTGATAAGT AGGGGGGT TCGTGTCCTA chr2R:11613057-11613177 16 5.98e-05 TGTGGGCGCA AGGGGGGA CTGGGGGTTG chr2L:19440879-19440999 48 5.98e-05 CGAGTGCGAA AGGGGGGA ATGCATGCAA chr2R:22059044-22059164 37 6.97e-05 GGACATCAGC AGGGGTGC TTTTGAAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17850236-17850356 9.6e-06 24_[+5]_88 chr3L:8997301-8997421 9.6e-06 87_[+5]_25 chrX:477290-477410 9.6e-06 54_[+5]_58 chr3R:31938459-31938579 9.6e-06 111_[+5]_1 chr4:389053-389173 2.1e-05 111_[+5]_1 chr3L:8738955-8739075 2.1e-05 66_[+5]_46 chrX:1774384-1774504 2.1e-05 86_[+5]_26 chr3R:28801961-28802081 2.1e-05 81_[+5]_31 chrX:5650122-5650242 2.9e-05 69_[+5]_43 chr3L:4574568-4574688 2.9e-05 43_[+5]_69 chrX:7338055-7338175 4.1e-05 88_[+5]_24 chr2L:20230154-20230274 4.1e-05 75_[+5]_37 chr2L:2195441-2195561 5e-05 43_[+5]_69 chr2R:11613057-11613177 6e-05 15_[+5]_97 chr2L:19440879-19440999 6e-05 47_[+5]_65 chr2R:22059044-22059164 7e-05 36_[+5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGTGD width=8 seqs=16 chr2R:17850236-17850356 ( 25) AGGGGTGG 1 chr3L:8997301-8997421 ( 88) AGGGGTGG 1 chrX:477290-477410 ( 55) AGGGGTGG 1 chr3R:31938459-31938579 ( 112) AGGGGTGG 1 chr4:389053-389173 ( 112) AGGGGTGT 1 chr3L:8738955-8739075 ( 67) AGGGGTGT 1 chrX:1774384-1774504 ( 87) AGGGGTGT 1 chr3R:28801961-28802081 ( 82) AGGGGTGT 1 chrX:5650122-5650242 ( 70) AGGGGGGG 1 chr3L:4574568-4574688 ( 44) AGGGGGGG 1 chrX:7338055-7338175 ( 89) AGGGGTGA 1 chr2L:20230154-20230274 ( 76) AGGGGTGA 1 chr2L:2195441-2195561 ( 44) AGGGGGGT 1 chr2R:11613057-11613177 ( 16) AGGGGGGA 1 chr2L:19440879-19440999 ( 48) AGGGGGGA 1 chr2R:22059044-22059164 ( 37) AGGGGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 2.4e+003 190 -1064 -1064 -1064 -1064 -1064 215 -1064 -1064 -1064 215 -1064 -1064 -1064 215 -1064 -1064 -1064 215 -1064 -1064 -1064 48 131 -1064 -1064 215 -1064 -10 -188 74 18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.4e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.312500 0.687500 0.000000 0.000000 1.000000 0.000000 0.250000 0.062500 0.375000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGTGD MEME-5 regular expression -------------------------------------------------------------------------------- AGGGG[TG]G[GTA] -------------------------------------------------------------------------------- Time 32.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:25279936-25280056 1.98e-03 58_[+2(1.34e-05)]_54 chr3L:22572411-22572531 2.81e-01 120 chrX:13374276-13374396 8.18e-02 81_[+2(4.99e-05)]_31 chr4:1306496-1306616 9.58e-04 93_[+1(1.62e-05)]_19 chr2L:6412092-6412212 2.78e-01 120 chr3L:3061188-3061308 2.23e-02 17_[+4(2.92e-05)]_95 chr3R:25638520-25638640 4.34e-02 120 chrX:11894293-11894413 3.79e-02 120 chrX:1904122-1904242 3.90e-02 34_[+1(8.79e-05)]_78 chr2L:12272512-12272632 6.63e-01 120 chrX:5433021-5433141 1.54e-03 42_[+2(1.34e-05)]_70 chr2R:7955312-7955432 2.95e-03 120 chrX:3867926-3868046 1.18e-01 68_[+3(3.58e-05)]_44 chr2L:4185408-4185528 6.90e-01 120 chrX:5433222-5433342 2.34e-01 120 chr3R:14021349-14021469 4.55e-01 120 chrX:10479401-10479521 1.86e-01 72_[+1(1.62e-05)]_40 chr3L:489493-489613 1.04e-01 28_[+1(1.62e-05)]_84 chr3L:18072135-18072255 8.92e-02 120 chr2L:73847-73967 3.37e-02 120 chr2L:12027574-12027694 6.11e-01 120 chr3L:3071821-3071941 1.51e-02 2_[+1(4.56e-05)]_12_[+1(4.56e-05)]_\ 9_[+1(4.56e-05)]_73 chr2L:16042811-16042931 7.47e-03 45_[+3(7.76e-05)]_67 chr2R:1591589-1591709 1.43e-01 47_[+1(4.56e-05)]_65 chr3R:10311215-10311335 2.21e-02 120 chrX:16063481-16063601 2.60e-03 85_[+1(4.56e-05)]_3_[+2(9.09e-05)]_\ 16 chrX:17611596-17611716 5.89e-04 9_[+1(1.62e-05)]_21_[+2(1.34e-05)]_\ 74 chr3L:3425012-3425132 8.93e-01 120 chr3R:25438492-25438612 1.23e-02 38_[+2(1.34e-05)]_74 chrX:11987751-11987871 1.31e-02 103_[+2(1.34e-05)]_9 chr3L:4556970-4557090 5.76e-01 120 chr3R:8698015-8698135 1.15e-01 71_[+1(4.56e-05)]_41 chr3R:9159052-9159172 7.98e-02 57_[+2(1.34e-05)]_55 chr3R:23181853-23181973 2.82e-02 29_[+3(7.76e-05)]_15_[+3(7.76e-05)]_\ 60 chr3R:11330852-11330972 5.70e-03 6_[+1(7.47e-05)]_106 chr3R:8935069-8935189 7.81e-03 120 chr3R:24260307-24260427 8.16e-01 120 chrX:21311745-21311865 3.53e-01 120 chrX:10070464-10070584 6.08e-02 35_[+3(7.76e-05)]_77 chr3R:23279707-23279827 1.83e-01 120 chr2R:7782027-7782147 2.90e-01 102_[+3(3.58e-05)]_10 chr2R:16901664-16901784 5.74e-03 76_[+2(1.34e-05)]_36 chr2L:13349376-13349496 2.08e-01 120 chr2R:9293724-9293844 3.23e-01 120 chr3L:9681195-9681315 9.64e-01 120 chrX:5905342-5905462 4.01e-01 120 chr3R:11334412-11334532 3.62e-01 120 chr2L:20230154-20230274 1.90e-02 75_[+5(4.08e-05)]_37 chrX:619359-619479 1.27e-01 120 chrX:10891072-10891192 3.06e-01 120 chrX:13821563-13821683 1.49e-04 41_[+2(4.99e-05)]_12_[+4(7.85e-06)]_\ 51 chr2L:16539061-16539181 1.25e-02 72_[+2(1.34e-05)]_40 chrX:4119691-4119811 4.43e-01 120 chrX:14951485-14951605 1.05e-01 101_[+1(4.56e-05)]_11 chr2R:22059044-22059164 9.12e-04 36_[+5(6.97e-05)]_37_[+2(4.99e-05)]_\ 31 chr2R:16431748-16431868 1.88e-02 53_[+2(1.34e-05)]_59 chr3L:3461677-3461797 1.06e-02 120 chrX:3369583-3369703 4.29e-01 120 chrX:1620049-1620169 4.81e-02 30_[+3(3.58e-05)]_82 chr2R:24967750-24967870 5.84e-01 120 chr3L:10322020-10322140 9.72e-03 1_[+1(8.79e-05)]_111 chr3R:20284318-20284438 3.13e-02 120 chr2L:13349642-13349762 6.16e-02 97_[+1(1.62e-05)]_15 chr3L:18957191-18957311 5.26e-03 89_[+2(1.34e-05)]_23 chr3R:14088523-14088643 3.72e-01 120 chr3L:18896444-18896564 3.01e-03 96_[+2(1.34e-05)]_16 chr3L:4574568-4574688 1.23e-05 41_[+4(7.85e-06)]_38_[+1(4.56e-05)]_\ 25 chrX:22481556-22481676 1.33e-02 120 chr2R:22806361-22806481 9.56e-01 120 chrX:18930981-18931101 1.03e-01 120 chrX:19260254-19260374 8.25e-01 120 chr2R:7786342-7786462 3.16e-03 38_[+3(3.58e-05)]_74 chr2L:20330297-20330417 7.72e-01 120 chr2L:1043330-1043450 2.54e-01 120 chrX:8569164-8569284 1.64e-02 120 chr3R:28801961-28802081 1.64e-03 81_[+5(2.14e-05)]_31 chr3R:8935275-8935395 7.60e-01 120 chr3L:19632018-19632138 8.03e-01 120 chrX:5885691-5885811 6.16e-02 36_[+1(1.62e-05)]_76 chr3R:28874883-28875003 1.91e-01 80_[+1(1.62e-05)]_32 chrX:5650122-5650242 3.69e-04 55_[+4(2.92e-05)]_4_[+4(7.85e-06)]_\ 45 chr2L:19590749-19590869 1.18e-01 85_[+1(1.62e-05)]_27 chr3L:439683-439803 3.34e-03 41_[+3(3.58e-05)]_71 chr3L:7911009-7911129 1.30e-03 10_[+3(7.76e-05)]_64_[+2(1.34e-05)]_\ 30 chr2L:15271496-15271616 4.13e-01 120 chr3L:9903086-9903206 2.17e-03 23_[+2(1.34e-05)]_1_[+1(7.47e-05)]_\ 80 chrX:11873198-11873318 6.36e-02 120 chrX:7445166-7445286 5.29e-02 3_[+1(1.62e-05)]_42_[+1(1.62e-05)]_\ 59 chr2L:18156049-18156169 8.30e-02 [+2(2.46e-05)]_112 chr3R:31938459-31938579 1.39e-04 81_[+2(1.34e-05)]_22_[+5(9.63e-06)]_\ 1 chrX:16792788-16792908 9.32e-01 120 chr2R:21297768-21297888 8.77e-01 120 chr3L:805182-805302 5.55e-02 89_[+1(1.62e-05)]_23 chr2R:12120404-12120524 1.99e-02 21_[+5(9.51e-05)]_91 chr3L:6979355-6979475 1.14e-02 101_[+5(5.98e-05)]_11 chr3R:18698994-18699114 6.04e-02 120 chr3R:18680371-18680491 5.46e-01 120 chr4:1318969-1319089 2.32e-03 81_[+1(1.62e-05)]_31 chr3L:20348793-20348913 2.69e-01 120 chrX:19260523-19260643 1.56e-02 4_[+2(9.09e-05)]_64_[+3(3.58e-05)]_\ 36 chr3R:13363471-13363591 1.32e-01 120 chr2L:15752152-15752272 1.20e-01 58_[+1(1.62e-05)]_54 chrX:5637720-5637840 4.33e-02 96_[+2(2.46e-05)]_16 chr2L:19164752-19164872 1.52e-01 120 chr3L:3926330-3926450 9.32e-02 47_[+2(9.09e-05)]_65 chrX:2551984-2552104 2.64e-01 43_[+1(8.79e-05)]_69 chrX:7338055-7338175 4.13e-03 88_[+5(4.08e-05)]_24 chr4:425067-425187 2.10e-03 111_[+1(1.62e-05)]_1 chr3R:23182086-23182206 9.96e-01 120 chr2L:16043011-16043131 9.54e-01 120 chrX:2297978-2298098 2.97e-01 120 chr3L:12788498-12788618 4.37e-01 120 chrX:8490412-8490532 5.95e-02 80_[+3(3.58e-05)]_32 chrX:1774384-1774504 5.18e-03 86_[+5(2.14e-05)]_26 chr2L:7809033-7809153 4.48e-01 120 chr3R:5322171-5322291 2.25e-04 19_[+4(7.85e-06)]_93 chr2L:2800044-2800164 2.93e-03 80_[+2(2.46e-05)]_32 chr2L:9386409-9386529 3.49e-01 120 chr3R:18547126-18547246 6.51e-02 70_[+1(4.56e-05)]_42 chr3L:13674372-13674492 9.44e-02 55_[+1(1.62e-05)]_57 chr3L:8738955-8739075 2.48e-05 66_[+5(2.14e-05)]_28_[+2(1.34e-05)]_\ 10 chrX:477290-477410 3.19e-04 54_[+5(9.63e-06)]_58 chr3L:17813154-17813274 2.12e-02 120 chr3L:2228735-2228855 1.86e-02 120 chr2L:19440879-19440999 6.64e-03 47_[+5(5.98e-05)]_65 chr3L:10246479-10246599 1.78e-01 53_[+1(1.62e-05)]_59 chrX:7298415-7298535 4.31e-03 73_[+1(4.56e-05)]_39 chr2L:2195441-2195561 1.69e-02 43_[+5(5.05e-05)]_69 chr3R:12977932-12978052 8.79e-02 120 chrX:12987108-12987228 4.19e-02 120 chr3R:20958867-20958987 1.36e-01 54_[+3(3.58e-05)]_58 chrX:12988168-12988288 1.85e-01 29_[+1(1.62e-05)]_83 chr2R:24927394-24927514 1.33e-02 84_[+2(4.99e-05)]_28 chrX:22480777-22480897 6.24e-02 66_[+1(4.56e-05)]_46 chrX:13358423-13358543 6.57e-03 81_[+3(7.76e-05)]_31 chrX:11679958-11680078 3.26e-01 120 chr3R:7394535-7394655 9.97e-01 120 chrX:11679689-11679809 7.76e-01 120 chrX:3775279-3775399 1.86e-01 32_[+3(3.58e-05)]_80 chr2R:21161119-21161239 1.50e-04 20_[+5(9.51e-05)]_9_[+3(3.58e-05)]_\ 75 chr2R:9294516-9294636 6.41e-01 120 chr3R:5365270-5365390 7.30e-03 78_[+2(1.34e-05)]_34 chrX:12662024-12662144 7.83e-02 120 chr3R:24016518-24016638 1.61e-03 48_[+2(1.34e-05)]_64 chr3R:29376538-29376658 9.95e-01 120 chr3R:16501194-16501314 1.55e-03 25_[+2(2.46e-05)]_56_[+1(7.47e-05)]_\ 23 chr2L:18106293-18106413 2.90e-01 58_[+1(7.47e-05)]_54 chr2L:16447218-16447338 3.19e-01 120 chrX:18864727-18864847 7.10e-01 120 chrX:13281762-13281882 2.38e-01 13_[+3(3.58e-05)]_73_[+3(7.76e-05)]_\ 18 chr3L:4840666-4840786 1.39e-01 55_[+1(1.62e-05)]_57 chr3L:16807329-16807449 7.95e-02 120 chrX:9035362-9035482 1.11e-01 105_[+2(4.99e-05)]_7 chr3L:8913300-8913420 1.81e-01 120 chr2R:20998799-20998919 3.83e-01 120 chr3R:12021143-12021263 3.91e-01 120 chrX:13752775-13752895 3.55e-01 120 chr3L:7911214-7911334 6.08e-01 120 chr2R:16896803-16896923 9.02e-03 65_[+2(1.34e-05)]_47 chr3R:11947647-11947767 2.78e-03 106_[+2(9.09e-05)]_6 chr2R:8568410-8568530 5.01e-01 120 chrX:6875184-6875304 5.06e-03 25_[+2(1.34e-05)]_87 chr3R:11331075-11331195 1.96e-01 120 chrX:15333763-15333883 5.21e-02 120 chrX:18864525-18864645 3.12e-01 120 chr3L:20349001-20349121 3.24e-01 120 chr2R:11172220-11172340 1.03e-01 44_[+1(1.62e-05)]_68 chr3R:13434409-13434529 6.96e-02 13_[+2(4.99e-05)]_99 chrX:1009791-1009911 8.82e-01 120 chr3L:16854742-16854862 2.90e-01 120 chr4:389053-389173 2.22e-03 111_[+5(2.14e-05)]_1 chr2L:16198269-16198389 1.99e-01 28_[+1(1.62e-05)]_26_[+1(4.56e-05)]_\ 50 chrX:618106-618226 9.06e-02 120 chrX:4909641-4909761 2.33e-04 120 chr3L:9927275-9927395 7.71e-04 54_[+1(1.62e-05)]_58 chr3L:20885352-20885472 4.72e-03 106_[+1(1.62e-05)]_6 chr3R:21200702-21200822 6.64e-02 120 chrX:11922780-11922900 3.33e-01 52_[+1(4.56e-05)]_60 chrX:1267757-1267877 5.18e-02 120 chr3L:7772259-7772379 3.75e-01 120 chr3R:12857650-12857770 3.18e-01 120 chrX:7967490-7967610 6.02e-01 120 chr3R:8306315-8306435 6.06e-02 120 chr3R:23279918-23280038 7.37e-01 120 chr3L:748974-749094 3.13e-01 81_[+1(4.56e-05)]_31 chr3L:8997301-8997421 7.53e-04 87_[+5(9.63e-06)]_25 chr3R:21612593-21612713 6.23e-01 120 chrX:5636811-5636931 1.08e-01 120 chr2R:13550223-13550343 8.48e-03 120 chr3L:1529236-1529356 2.36e-02 104_[+2(9.09e-05)]_8 chr2R:11613057-11613177 2.24e-03 15_[+5(5.98e-05)]_97 chrX:5745550-5745670 4.21e-02 111_[+2(9.09e-05)]_1 chr3L:18846607-18846727 9.34e-01 120 chr3R:18089492-18089612 1.13e-01 120 chr3R:22727581-22727701 5.94e-02 76_[+3(3.58e-05)]_17_[+3(3.58e-05)]_\ 11 chr3L:19079220-19079340 8.04e-02 120 chr3L:6216831-6216951 1.97e-01 43_[+1(4.56e-05)]_69 chr3R:13304816-13304936 4.49e-01 39_[+1(7.47e-05)]_73 chr2R:6971041-6971161 7.85e-03 66_[+1(7.47e-05)]_46 chrX:3470607-3470727 2.12e-01 73_[+1(4.56e-05)]_39 chr2R:8288916-8289036 1.49e-01 120 chrX:10070663-10070783 9.90e-01 120 chr3R:26606682-26606802 8.18e-03 120 chr3L:9401559-9401679 9.92e-01 120 chr3L:17254346-17254466 8.35e-02 98_[+1(8.79e-05)]_14 chr2L:2131851-2131971 4.30e-01 120 chr3R:18160456-18160576 8.87e-03 51_[+2(1.34e-05)]_61 chrX:5446418-5446538 2.69e-01 120 chr2L:3144037-3144157 2.46e-01 120 chrX:13284327-13284447 1.70e-01 120 chr3R:11567285-11567405 1.98e-01 120 chr2L:18118343-18118463 1.00e+00 120 chrX:3377668-3377788 2.49e-02 120 chr3R:21043659-21043779 4.41e-03 22_[+2(1.34e-05)]_90 chr2R:22940959-22941079 5.48e-01 120 chr2L:395675-395795 5.29e-02 120 chrX:16694558-16694678 3.58e-02 120 chr3R:18731402-18731522 4.40e-01 120 chrX:16792581-16792701 1.05e-01 120 chr2R:22245054-22245174 9.34e-04 43_[+1(7.47e-05)]_41_[+2(1.34e-05)]_\ 20 chr3L:18182041-18182161 9.98e-01 120 chr3R:7394316-7394436 1.65e-01 53_[+2(9.09e-05)]_59 chr3R:27603945-27604065 1.38e-01 66_[+1(1.62e-05)]_46 chr2R:7786575-7786695 6.65e-01 120 chrX:19498909-19499029 3.67e-02 120 chr3L:10776809-10776929 3.77e-02 21_[+1(7.47e-05)]_91 chr3R:8931184-8931304 3.85e-02 120 chr2R:13363004-13363124 9.79e-01 120 chrX:19510381-19510501 2.00e-02 72_[+2(4.99e-05)]_40 chr3L:2553572-2553692 3.96e-01 120 chrX:4203860-4203980 8.60e-04 56_[+2(1.34e-05)]_40_[+5(7.77e-05)]_\ 8 chrX:8049418-8049538 1.12e-01 38_[+1(1.62e-05)]_74 chr2L:17328003-17328123 3.93e-02 120 chrX:619560-619680 9.83e-01 120 chr3L:9907811-9907931 1.03e-02 40_[+1(1.62e-05)]_29_[+1(1.62e-05)]_\ 35 chr3L:3072963-3073083 2.81e-01 67_[+3(3.58e-05)]_45 chr2R:18760713-18760833 2.29e-02 9_[+2(2.46e-05)]_103 chr3R:11759353-11759473 7.10e-03 65_[+1(1.62e-05)]_47 chr2R:23632763-23632883 9.60e-01 120 chrX:15075601-15075721 2.72e-02 120 chr2R:6648658-6648778 3.01e-03 120 chr3R:9516838-9516958 8.14e-01 120 chr2L:20720238-20720358 1.82e-02 45_[+1(1.62e-05)]_67 chr2R:10383509-10383629 1.15e-01 64_[+1(4.56e-05)]_48 chr2R:17850236-17850356 4.11e-03 24_[+5(9.63e-06)]_88 chr3R:20991087-20991207 2.15e-02 120 chrX:546491-546611 7.96e-02 120 chr3R:13042741-13042861 4.06e-03 98_[+3(7.76e-05)]_14 chrX:15465469-15465589 7.51e-03 61_[+2(4.99e-05)]_51 chr3R:25056805-25056925 1.07e-01 37_[+1(4.56e-05)]_75 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n05.farnam.hpc.yale.internal ********************************************************************************