******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/p53.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:9421756-9421876 1.0000 120 chr3L:18187592-18187712 1.0000 120 chr2L:4354941-4355061 1.0000 120 chr3L:5785802-5785922 1.0000 120 chrX:19510299-19510419 1.0000 120 chr3R:18924370-18924490 1.0000 120 chr3L:15838111-15838231 1.0000 120 chrX:13761893-13762013 1.0000 120 chr2L:7203622-7203742 1.0000 120 chrX:2033280-2033400 1.0000 120 chr3R:9724764-9724884 1.0000 120 chr2L:5068849-5068969 1.0000 120 chr2L:16787593-16787713 1.0000 120 chr3L:11343757-11343877 1.0000 120 chr3L:1294938-1295058 1.0000 120 chr3L:11489804-11489924 1.0000 120 chr2L:16287146-16287266 1.0000 120 chr3L:1366868-1366988 1.0000 120 chr2R:21159498-21159618 1.0000 120 chr3R:23053253-23053373 1.0000 120 chr2L:2966202-2966322 1.0000 120 chr2R:21159701-21159821 1.0000 120 chrX:15019618-15019738 1.0000 120 chrX:15089406-15089526 1.0000 120 chrX:10086724-10086844 1.0000 120 chr3L:14966598-14966718 1.0000 120 chr3R:17645387-17645507 1.0000 120 chr2R:16611384-16611504 1.0000 120 chrX:16276650-16276770 1.0000 120 chr3R:27253791-27253911 1.0000 120 chrX:15584122-15584242 1.0000 120 chrX:6689127-6689247 1.0000 120 chrX:10087401-10087521 1.0000 120 chr2L:4822380-4822500 1.0000 120 chr2L:6465076-6465196 1.0000 120 chr2L:5421893-5422013 1.0000 120 chr2R:7596070-7596190 1.0000 120 chr3L:14968273-14968393 1.0000 120 chr3L:15954187-15954307 1.0000 120 chr4:488947-489067 1.0000 120 chrX:19578318-19578438 1.0000 120 chrX:18864249-18864369 1.0000 120 chrX:7959771-7959891 1.0000 120 chr2R:23187865-23187985 1.0000 120 chrX:19631379-19631499 1.0000 120 chrX:21345511-21345631 1.0000 120 chrX:17829780-17829900 1.0000 120 chrX:19897646-19897766 1.0000 120 chrX:8907572-8907692 1.0000 120 chrX:8419750-8419870 1.0000 120 chr3L:12414290-12414410 1.0000 120 chrX:11797019-11797139 1.0000 120 chrX:7196136-7196256 1.0000 120 chr3L:22742000-22742120 1.0000 120 chrX:19729579-19729699 1.0000 120 chrX:8905897-8906017 1.0000 120 chr3R:8848240-8848360 1.0000 120 chr3R:23053458-23053578 1.0000 120 chr3L:19635885-19636005 1.0000 120 chr3R:26006776-26006896 1.0000 120 chrX:5897468-5897588 1.0000 120 chrX:1711338-1711458 1.0000 120 chr2L:10301380-10301500 1.0000 120 chrX:10367117-10367237 1.0000 120 chr3R:4807723-4807843 1.0000 120 chr2R:7367599-7367719 1.0000 120 chr3R:23279082-23279202 1.0000 120 chr3L:18193930-18194050 1.0000 120 chr2L:21593176-21593296 1.0000 120 chrX:9605680-9605800 1.0000 120 chr3L:548705-548825 1.0000 120 chrX:1927981-1928101 1.0000 120 chrX:5690231-5690351 1.0000 120 chr2L:20082812-20082932 1.0000 120 chr3L:11119703-11119823 1.0000 120 chr3L:2464861-2464981 1.0000 120 chr3L:11251840-11251960 1.0000 120 chr3R:9879796-9879916 1.0000 120 chrX:6701013-6701133 1.0000 120 chr3L:225293-225413 1.0000 120 chr2R:9683796-9683916 1.0000 120 chr2R:13592792-13592912 1.0000 120 chrX:16654920-16655040 1.0000 120 chr3R:24582092-24582212 1.0000 120 chrX:16296244-16296364 1.0000 120 chr2R:15610969-15611089 1.0000 120 chrX:20330273-20330393 1.0000 120 chr2L:13234888-13235008 1.0000 120 chrX:10835477-10835597 1.0000 120 chrX:19207588-19207708 1.0000 120 chr2L:7056692-7056812 1.0000 120 chr2L:16287362-16287482 1.0000 120 chrX:1409105-1409225 1.0000 120 chr3R:19096848-19096968 1.0000 120 chr3R:16453151-16453271 1.0000 120 chrX:2065331-2065451 1.0000 120 chr2R:23894799-23894919 1.0000 120 chr3R:29503604-29503724 1.0000 120 chrX:13820240-13820360 1.0000 120 chr3R:13685145-13685265 1.0000 120 chrX:17051004-17051124 1.0000 120 chrX:6866079-6866199 1.0000 120 chr2L:4197549-4197669 1.0000 120 chr3L:14969353-14969473 1.0000 120 chrX:3428956-3429076 1.0000 120 chr4:458826-458946 1.0000 120 chr3R:31271202-31271322 1.0000 120 chrX:1308530-1308650 1.0000 120 chr3R:24720079-24720199 1.0000 120 chr2R:11893379-11893499 1.0000 120 chrX:6192536-6192656 1.0000 120 chr3L:11254981-11255101 1.0000 120 chr3L:11295909-11296029 1.0000 120 chr2R:10652169-10652289 1.0000 120 chr3L:23250462-23250582 1.0000 120 chrX:17578274-17578394 1.0000 120 chr3R:6768418-6768538 1.0000 120 chrX:9599345-9599465 1.0000 120 chr3R:24269927-24270047 1.0000 120 chr2L:14014035-14014155 1.0000 120 chr2L:8111183-8111303 1.0000 120 chr2R:9869703-9869823 1.0000 120 chr2R:10078360-10078480 1.0000 120 chr3R:28859415-28859535 1.0000 120 chrX:13284665-13284785 1.0000 120 chr2R:16831205-16831325 1.0000 120 chrX:14955285-14955405 1.0000 120 chr3L:645227-645347 1.0000 120 chr3L:10691005-10691125 1.0000 120 chr3R:9343033-9343153 1.0000 120 chr3L:1546604-1546724 1.0000 120 chr2R:6171534-6171654 1.0000 120 chr3L:20385796-20385916 1.0000 120 chr2R:20896382-20896502 1.0000 120 chr3R:29841614-29841734 1.0000 120 chr2L:5083320-5083440 1.0000 120 chrX:529912-530032 1.0000 120 chr4:358232-358352 1.0000 120 chr3R:24720309-24720429 1.0000 120 chr2R:17478176-17478296 1.0000 120 chr3L:14953203-14953323 1.0000 120 chr3L:3225413-3225533 1.0000 120 chr3L:20518596-20518716 1.0000 120 chr3R:20593550-20593670 1.0000 120 chr3L:6550228-6550348 1.0000 120 chrX:12463500-12463620 1.0000 120 chr2R:10195074-10195194 1.0000 120 chr3R:26026840-26026960 1.0000 120 chr3R:20558229-20558349 1.0000 120 chr3R:4479347-4479467 1.0000 120 chr2R:23601858-23601978 1.0000 120 chr3L:14118831-14118951 1.0000 120 chr2L:1157489-1157609 1.0000 120 chr3R:31571937-31572057 1.0000 120 chrX:3776557-3776677 1.0000 120 chr2R:15931417-15931537 1.0000 120 chrX:12742498-12742618 1.0000 120 chr2L:4197755-4197875 1.0000 120 chrX:6179550-6179670 1.0000 120 chrX:10814861-10814981 1.0000 120 chr2L:17260704-17260824 1.0000 120 chr2R:8655730-8655850 1.0000 120 chr3L:20664094-20664214 1.0000 120 chr2R:23864813-23864933 1.0000 120 chr4:1051469-1051589 1.0000 120 chr3L:13845377-13845497 1.0000 120 chrX:19608443-19608563 1.0000 120 chrX:16105837-16105957 1.0000 120 chrX:13805749-13805869 1.0000 120 chr3L:22136124-22136244 1.0000 120 chrX:9605881-9606001 1.0000 120 chr3R:5086616-5086736 1.0000 120 chr2L:20066391-20066511 1.0000 120 chrX:8271615-8271735 1.0000 120 chr2L:8522035-8522155 1.0000 120 chr2R:8572689-8572809 1.0000 120 chrX:1773732-1773852 1.0000 120 chr3R:20154821-20154941 1.0000 120 chr2L:10249803-10249923 1.0000 120 chr3L:13450744-13450864 1.0000 120 chr3L:18618210-18618330 1.0000 120 chr3L:19349908-19350028 1.0000 120 chr3L:11286695-11286815 1.0000 120 chr3R:31086504-31086624 1.0000 120 chr2L:11130806-11130926 1.0000 120 chr3L:11492584-11492704 1.0000 120 chrX:11715406-11715526 1.0000 120 chrX:5524621-5524741 1.0000 120 chr3R:16254955-16255075 1.0000 120 chr3L:1463736-1463856 1.0000 120 chr2L:6481372-6481492 1.0000 120 chr3L:11285917-11286037 1.0000 120 chr2R:15934689-15934809 1.0000 120 chrX:9658341-9658461 1.0000 120 chr3L:19140564-19140684 1.0000 120 chr2R:17476363-17476483 1.0000 120 chrX:18239449-18239569 1.0000 120 chrX:7737230-7737350 1.0000 120 chr2L:4363841-4363961 1.0000 120 chr3L:21412244-21412364 1.0000 120 chr3R:31580778-31580898 1.0000 120 chr2L:19452850-19452970 1.0000 120 chr2L:15333734-15333854 1.0000 120 chr3R:24582295-24582415 1.0000 120 chr3L:2237084-2237204 1.0000 120 chrX:18357829-18357949 1.0000 120 chr3L:18065025-18065145 1.0000 120 chr2L:15333933-15334053 1.0000 120 chr2L:10303904-10304024 1.0000 120 chr3R:6657854-6657974 1.0000 120 chr2L:1654322-1654442 1.0000 120 chrX:15076123-15076243 1.0000 120 chr2R:6810989-6811109 1.0000 120 chr2R:21648149-21648269 1.0000 120 chrX:801494-801614 1.0000 120 chr3R:9677832-9677952 1.0000 120 chrX:7291290-7291410 1.0000 120 chrX:9155835-9155955 1.0000 120 chrX:16278236-16278356 1.0000 120 chr2R:21128503-21128623 1.0000 120 chr2L:17473094-17473214 1.0000 120 chr3L:6606031-6606151 1.0000 120 chr3R:5736888-5737008 1.0000 120 chr2R:24780861-24780981 1.0000 120 chr3R:15286169-15286289 1.0000 120 chr2R:17430952-17431072 1.0000 120 chr3R:21580237-21580357 1.0000 120 chr2R:10886726-10886846 1.0000 120 chr2L:2967000-2967120 1.0000 120 chr2R:12665929-12666049 1.0000 120 chr3R:20593287-20593407 1.0000 120 chr2R:20641529-20641649 1.0000 120 chr2R:23551265-23551385 1.0000 120 chr3L:3851923-3852043 1.0000 120 chr2L:4838748-4838868 1.0000 120 chr2L:871482-871602 1.0000 120 chr2L:17784768-17784888 1.0000 120 chr2L:21221190-21221310 1.0000 120 chrX:14832570-14832690 1.0000 120 chr3R:4714150-4714270 1.0000 120 chr2R:9693190-9693310 1.0000 120 chrX:12889218-12889338 1.0000 120 chr3R:16996149-16996269 1.0000 120 chr2R:7012192-7012312 1.0000 120 chr2R:8242643-8242763 1.0000 120 chr3R:21073265-21073385 1.0000 120 chr2R:9969015-9969135 1.0000 120 chr2R:22062538-22062658 1.0000 120 chr2L:15060716-15060836 1.0000 120 chr2L:18823599-18823719 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_p53/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/p53.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.269 C 0.235 G 0.232 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.269 C 0.236 G 0.232 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACAYRCAC MEME-1 width = 8 sites = 69 llr = 553 E-value = 2.1e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9:9:3:a2 pos.-specific C :a:5:a:6 probability G 1:1:7::: matrix T :::5:::2 bits 2.1 * * 1.9 * ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 *** *** (11.6 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACATGCAC consensus CA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9693190-9693310 80 1.40e-05 AAAATACAGA ACACGCAC GATCGAGTTG chrX:18357829-18357949 90 1.40e-05 gcacgcactg acacgcac gctggcacac chrX:9658341-9658461 15 1.40e-05 cacacacgta acacgcac aagcaGGCGC chr2L:8522035-8522155 1 1.40e-05 . ACACGCAC ACTCTTGTGA chrX:10814861-10814981 57 1.40e-05 AAGAGacaac acacgcac agacacgcac chr2L:7056692-7056812 56 1.40e-05 tgcatgctgc acacgcac acacacatgc chr2R:13592792-13592912 49 1.40e-05 acttgcaagc acacgcac acGTGTGACG chrX:8905897-8906017 71 1.40e-05 GCGCGAACAG ACACGCAC ACACATGTAC chrX:19729579-19729699 72 1.40e-05 ACACGCATAG ACACGCAC ACAACAAAAA chr3L:12414290-12414410 51 1.40e-05 AGCTTCACGC ACACGCAC GCACATGTCT chr2L:4822380-4822500 45 1.40e-05 cacacacacc acacgcac aaacGTGCGC chr2R:16611384-16611504 73 1.40e-05 TTATGCATGC ACACGCAC ACGAAAGCAG chr2L:16787593-16787713 58 1.40e-05 CCACTCCCGC ACACGCAC ACCAGTCAGT chr3R:5736888-5737008 97 2.96e-05 ACTAATTTCG ACATGCAC GATTTTGCTC chr3L:6550228-6550348 28 2.96e-05 ACAAGCTAAG ACATGCAC CTTTAACGAG chr3R:9343033-9343153 79 2.96e-05 TCAAGTACAA ACATGCAC ATAGTGATAT chr3L:10691005-10691125 47 2.96e-05 GCGCACACAC ACATGCAC AAGCACGCCC chr2R:10652169-10652289 4 2.96e-05 GCG ACATGCAC GAACATGCAA chr3R:13685145-13685265 6 2.96e-05 TGCAT ACATGCAC ACACGCCTTC chr2R:7367599-7367719 57 2.96e-05 TGCTGAACAG ACATGCAC GGGCATGACA chr3R:4807723-4807843 58 2.96e-05 TCTCGGCCAC ACATGCAC ACTCATGCAA chr3L:9421756-9421876 55 2.96e-05 TCAAACATGC ACATGCAC GCATTGCACG chr2L:15060716-15060836 108 4.59e-05 TTAAGCGAGT ACACACAC ATAGC chrX:12889218-12889338 15 4.59e-05 acacacagac acacacac TTCGTTATCC chrX:12463500-12463620 73 4.59e-05 TGCCAAATAT ACACACAC GATTGTTCCG chrX:11797019-11797139 15 4.59e-05 acacacccac acacacac tcaTGAGCAT chrX:18864249-18864369 50 4.59e-05 acgcatgcac acacacac tgacaagcac chrX:19578318-19578438 5 4.59e-05 ATAC ACACACAC ACATGCATAC chr3L:11285917-11286037 33 6.40e-05 atacatgcgt acatacac acatacatac chr2L:10249803-10249923 47 6.40e-05 GTAAATATGT ACATACAC ACGATTTGTA chr3R:24269927-24270047 45 7.96e-05 GCAAACATGG ACACGCAT GCGCAGGAGC chrX:6701013-6701133 56 7.96e-05 TCAAACAAGC ACACGCAT GCACAACGGT chr2L:15333734-15333854 16 9.70e-05 ACCTGAATGA ACATGCAT ACTCTCGGCG chrX:5524621-5524741 112 9.70e-05 CTTTTTTTTA ACATGCAT T chr2L:1157489-1157609 85 9.70e-05 TAAACtacat acatgcat acatacataT chr4:488947-489067 75 9.70e-05 gtgtgcgcgc acatgcat gcatacagcc chrX:10087401-10087521 85 9.70e-05 ACTGGTTTTT ACATGCAT AAACAAGTCG chr2L:2966202-2966322 89 9.70e-05 TAGCAGACAT ACATGCAT AGACGTGAAT chr2L:1654322-1654442 29 1.13e-04 GGCGCAGTTG ACACGCAA TATTTTTCGA chrX:20330273-20330393 110 1.13e-04 ACAAGCTACC ACACGCAA CTA chr2R:23551265-23551385 85 1.31e-04 ACACACGACT ACATGCAA TCGCAGTTTG chr3R:31271202-31271322 75 1.31e-04 TCATGAATAA ACATGCAA ACAAATTACT chr3L:11119703-11119823 72 1.31e-04 GCATGCATAA ACATGCAA AACGAAACCA chr3R:23053253-23053373 55 1.31e-04 GCGTGTTGCT ACATGCAA GGTTTCTACT chr3L:11489804-11489924 60 1.31e-04 GGTGGTAGCG ACATGCAA CAACATGTCG chrX:13284665-13284785 63 1.43e-04 ACTTCATTTA GCACGCAC ACACTTGTTA chr2L:6465076-6465196 61 1.43e-04 GTTTacgcac gcacgcac tcacgcacac chr3L:11492584-11492704 41 1.74e-04 GAAAAGGGAG ACACACAT ATGTGGACAC chrX:15019618-15019738 61 1.74e-04 GCAGACAGGC ACACACAT GCAGCAACGT chr4:358232-358352 56 1.95e-04 AGAGCTACAT ACATACAT ATGAATTGGT chrX:6866079-6866199 8 1.95e-04 caaacat acatacat gtgtacgcct chr3L:22742000-22742120 34 1.95e-04 GTGCTCTTGT ACATACAT TGTATACACC chrX:6689127-6689247 101 1.95e-04 GGCTGACCAC ACATACAT CCCATACACC chr2L:4197549-4197669 81 2.13e-04 ATGTTAGATT ACACACAA CGTGTTGCTG chr2R:8242643-8242763 8 2.34e-04 CTCCTAT ACATACAA TATTCTCTTG chr2L:4838748-4838868 105 2.48e-04 TACCTAGCAA GCACACAC TAACGCAC chr2L:16287362-16287482 52 2.48e-04 ACTCACACTC GCACACAC TAGCACTGCA chrX:1711338-1711458 42 3.17e-04 AGCCACACAG ACGTGCAC AGACATGCAG chr3L:19635885-19636005 66 3.17e-04 CTCGTCAGCG ACGTGCAC GATCGTGTTC chr2L:5068849-5068969 48 3.17e-04 GCAAGTGCAT GCATGCAT AACCGAGTAC chrX:6192536-6192656 11 3.47e-04 ATGTGCCAAA GCACGCAA CGCGTCGGCG chrX:5897468-5897588 57 3.47e-04 ACGTGTTTGT GCACGCAA ACTAATTAAG chr2L:7203622-7203742 52 3.47e-04 AATGAATAGG ACAAGCAC AATCATGTGG chr3L:18187592-18187712 63 3.62e-04 ACATGAGCGA GCATGCAA CAAGCGAAGA chrX:13805749-13805869 23 3.92e-04 tctctctctT ACGCACAC GTTCTTTGTG chrX:7737230-7737350 92 4.25e-04 TCTTTTTTAG GCATACAT CATACTGACA chr3R:24582092-24582212 101 4.25e-04 TTGGAATGGT ACGTACAC ATTTCAACAT chrX:2033280-2033400 64 4.25e-04 TAGATGCCAC GCATACAT GTCCGATCAT chr3R:18924370-18924490 2 4.88e-04 G ACAAACAC ACTCACTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9693190-9693310 1.4e-05 79_[+1]_33 chrX:18357829-18357949 1.4e-05 89_[+1]_23 chrX:9658341-9658461 1.4e-05 14_[+1]_98 chr2L:8522035-8522155 1.4e-05 [+1]_112 chrX:10814861-10814981 1.4e-05 56_[+1]_56 chr2L:7056692-7056812 1.4e-05 55_[+1]_57 chr2R:13592792-13592912 1.4e-05 48_[+1]_64 chrX:8905897-8906017 1.4e-05 70_[+1]_42 chrX:19729579-19729699 1.4e-05 71_[+1]_41 chr3L:12414290-12414410 1.4e-05 50_[+1]_62 chr2L:4822380-4822500 1.4e-05 44_[+1]_68 chr2R:16611384-16611504 1.4e-05 72_[+1]_40 chr2L:16787593-16787713 1.4e-05 57_[+1]_55 chr3R:5736888-5737008 3e-05 96_[+1]_16 chr3L:6550228-6550348 3e-05 27_[+1]_85 chr3R:9343033-9343153 3e-05 78_[+1]_34 chr3L:10691005-10691125 3e-05 46_[+1]_66 chr2R:10652169-10652289 3e-05 3_[+1]_109 chr3R:13685145-13685265 3e-05 5_[+1]_107 chr2R:7367599-7367719 3e-05 56_[+1]_56 chr3R:4807723-4807843 3e-05 57_[+1]_55 chr3L:9421756-9421876 3e-05 54_[+1]_58 chr2L:15060716-15060836 4.6e-05 107_[+1]_5 chrX:12889218-12889338 4.6e-05 14_[+1]_98 chrX:12463500-12463620 4.6e-05 72_[+1]_40 chrX:11797019-11797139 4.6e-05 14_[+1]_98 chrX:18864249-18864369 4.6e-05 49_[+1]_63 chrX:19578318-19578438 4.6e-05 4_[+1]_108 chr3L:11285917-11286037 6.4e-05 32_[+1]_80 chr2L:10249803-10249923 6.4e-05 46_[+1]_66 chr3R:24269927-24270047 8e-05 44_[+1]_68 chrX:6701013-6701133 8e-05 55_[+1]_57 chr2L:15333734-15333854 9.7e-05 15_[+1]_97 chrX:5524621-5524741 9.7e-05 111_[+1]_1 chr2L:1157489-1157609 9.7e-05 84_[+1]_28 chr4:488947-489067 9.7e-05 74_[+1]_38 chrX:10087401-10087521 9.7e-05 84_[+1]_28 chr2L:2966202-2966322 9.7e-05 88_[+1]_24 chr2L:1654322-1654442 0.00011 28_[+1]_84 chrX:20330273-20330393 0.00011 109_[+1]_3 chr2R:23551265-23551385 0.00013 84_[+1]_28 chr3R:31271202-31271322 0.00013 74_[+1]_38 chr3L:11119703-11119823 0.00013 71_[+1]_41 chr3R:23053253-23053373 0.00013 54_[+1]_58 chr3L:11489804-11489924 0.00013 59_[+1]_53 chrX:13284665-13284785 0.00014 62_[+1]_50 chr2L:6465076-6465196 0.00014 60_[+1]_52 chr3L:11492584-11492704 0.00017 40_[+1]_72 chrX:15019618-15019738 0.00017 60_[+1]_52 chr4:358232-358352 0.00019 55_[+1]_57 chrX:6866079-6866199 0.00019 7_[+1]_105 chr3L:22742000-22742120 0.00019 33_[+1]_79 chrX:6689127-6689247 0.00019 100_[+1]_12 chr2L:4197549-4197669 0.00021 80_[+1]_32 chr2R:8242643-8242763 0.00023 7_[+1]_105 chr2L:4838748-4838868 0.00025 104_[+1]_8 chr2L:16287362-16287482 0.00025 51_[+1]_61 chrX:1711338-1711458 0.00032 41_[+1]_71 chr3L:19635885-19636005 0.00032 65_[+1]_47 chr2L:5068849-5068969 0.00032 47_[+1]_65 chrX:6192536-6192656 0.00035 10_[+1]_102 chrX:5897468-5897588 0.00035 56_[+1]_56 chr2L:7203622-7203742 0.00035 51_[+1]_61 chr3L:18187592-18187712 0.00036 62_[+1]_50 chrX:13805749-13805869 0.00039 22_[+1]_90 chrX:7737230-7737350 0.00043 91_[+1]_21 chr3R:24582092-24582212 0.00043 100_[+1]_12 chrX:2033280-2033400 0.00043 63_[+1]_49 chr3R:18924370-18924490 0.00049 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAYRCAC width=8 seqs=69 chr2R:9693190-9693310 ( 80) ACACGCAC 1 chrX:18357829-18357949 ( 90) ACACGCAC 1 chrX:9658341-9658461 ( 15) ACACGCAC 1 chr2L:8522035-8522155 ( 1) ACACGCAC 1 chrX:10814861-10814981 ( 57) ACACGCAC 1 chr2L:7056692-7056812 ( 56) ACACGCAC 1 chr2R:13592792-13592912 ( 49) ACACGCAC 1 chrX:8905897-8906017 ( 71) ACACGCAC 1 chrX:19729579-19729699 ( 72) ACACGCAC 1 chr3L:12414290-12414410 ( 51) ACACGCAC 1 chr2L:4822380-4822500 ( 45) ACACGCAC 1 chr2R:16611384-16611504 ( 73) ACACGCAC 1 chr2L:16787593-16787713 ( 58) ACACGCAC 1 chr3R:5736888-5737008 ( 97) ACATGCAC 1 chr3L:6550228-6550348 ( 28) ACATGCAC 1 chr3R:9343033-9343153 ( 79) ACATGCAC 1 chr3L:10691005-10691125 ( 47) ACATGCAC 1 chr2R:10652169-10652289 ( 4) ACATGCAC 1 chr3R:13685145-13685265 ( 6) ACATGCAC 1 chr2R:7367599-7367719 ( 57) ACATGCAC 1 chr3R:4807723-4807843 ( 58) ACATGCAC 1 chr3L:9421756-9421876 ( 55) ACATGCAC 1 chr2L:15060716-15060836 ( 108) ACACACAC 1 chrX:12889218-12889338 ( 15) ACACACAC 1 chrX:12463500-12463620 ( 73) ACACACAC 1 chrX:11797019-11797139 ( 15) ACACACAC 1 chrX:18864249-18864369 ( 50) ACACACAC 1 chrX:19578318-19578438 ( 5) ACACACAC 1 chr3L:11285917-11286037 ( 33) ACATACAC 1 chr2L:10249803-10249923 ( 47) ACATACAC 1 chr3R:24269927-24270047 ( 45) ACACGCAT 1 chrX:6701013-6701133 ( 56) ACACGCAT 1 chr2L:15333734-15333854 ( 16) ACATGCAT 1 chrX:5524621-5524741 ( 112) ACATGCAT 1 chr2L:1157489-1157609 ( 85) ACATGCAT 1 chr4:488947-489067 ( 75) ACATGCAT 1 chrX:10087401-10087521 ( 85) ACATGCAT 1 chr2L:2966202-2966322 ( 89) ACATGCAT 1 chr2L:1654322-1654442 ( 29) ACACGCAA 1 chrX:20330273-20330393 ( 110) ACACGCAA 1 chr2R:23551265-23551385 ( 85) ACATGCAA 1 chr3R:31271202-31271322 ( 75) ACATGCAA 1 chr3L:11119703-11119823 ( 72) ACATGCAA 1 chr3R:23053253-23053373 ( 55) ACATGCAA 1 chr3L:11489804-11489924 ( 60) ACATGCAA 1 chrX:13284665-13284785 ( 63) GCACGCAC 1 chr2L:6465076-6465196 ( 61) GCACGCAC 1 chr3L:11492584-11492704 ( 41) ACACACAT 1 chrX:15019618-15019738 ( 61) ACACACAT 1 chr4:358232-358352 ( 56) ACATACAT 1 chrX:6866079-6866199 ( 8) ACATACAT 1 chr3L:22742000-22742120 ( 34) ACATACAT 1 chrX:6689127-6689247 ( 101) ACATACAT 1 chr2L:4197549-4197669 ( 81) ACACACAA 1 chr2R:8242643-8242763 ( 8) ACATACAA 1 chr2L:4838748-4838868 ( 105) GCACACAC 1 chr2L:16287362-16287482 ( 52) GCACACAC 1 chrX:1711338-1711458 ( 42) ACGTGCAC 1 chr3L:19635885-19636005 ( 66) ACGTGCAC 1 chr2L:5068849-5068969 ( 48) GCATGCAT 1 chrX:6192536-6192656 ( 11) GCACGCAA 1 chrX:5897468-5897588 ( 57) GCACGCAA 1 chr2L:7203622-7203742 ( 52) ACAAGCAC 1 chr3L:18187592-18187712 ( 63) GCATGCAA 1 chrX:13805749-13805869 ( 23) ACGCACAC 1 chrX:7737230-7737350 ( 92) GCATACAT 1 chr3R:24582092-24582212 ( 101) ACGTACAC 1 chrX:2033280-2033400 ( 64) GCATACAT 1 chr3R:18924370-18924490 ( 2) ACAAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 2.1e-016 167 -1275 -68 -1275 -1275 209 -1275 -1275 181 -1275 -200 -1275 -321 102 -1275 90 31 -1275 152 -1275 -1275 209 -1275 -1275 189 -1275 -1275 -1275 -63 130 -1275 -10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.1e-016 0.855072 0.000000 0.144928 0.000000 0.000000 1.000000 0.000000 0.000000 0.942029 0.000000 0.057971 0.000000 0.028986 0.478261 0.000000 0.492754 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.173913 0.579710 0.000000 0.246377 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYRCAC MEME-1 regular expression -------------------------------------------------------------------------------- ACA[TC][GA]CA[CT] -------------------------------------------------------------------------------- Time 8.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGYDTGY MEME-2 width = 8 sites = 48 llr = 395 E-value = 1.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :::5:::3 probability G a:8:5:a: matrix T :a353a:7 bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 **** *** (11.9 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGCGTGT consensus TTT C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14832570-14832690 101 1.24e-05 gtgcatgtgt gtgcgtgt gtgtgtcagt chrX:9155835-9155955 14 1.24e-05 CAGCATGTGT GTGCGTGT AGATGTGACA chr2L:19452850-19452970 90 1.24e-05 TTGCGTGAGT GTGCGTGT TTATTGGCGT chrX:8271615-8271735 91 1.24e-05 TGCATGTCGC GTGCGTGT GACGTCACGA chr3R:20593550-20593670 68 1.24e-05 gtgcgtgtgc gtgcgtgt AAGCATTGGA chr3R:27253791-27253911 89 1.24e-05 GTGCATGCGA GTGCGTGT CTGTCTGGAT chr2L:18823599-18823719 80 2.63e-05 GGATAATATT GTGTGTGT ATCCAGTTCA chr3L:20664094-20664214 97 2.63e-05 GATAATTTTT GTGTGTGT GCTGTCTGTT chr2L:5083320-5083440 24 2.63e-05 CGAAGCCGAC GTGTGTGT GCTTGTCGCC chr3R:31271202-31271322 3 2.63e-05 CT GTGTGTGT TTTGGCCAGT chrX:8905897-8906017 108 2.63e-05 CGGCCGCCGC GTGTGTGT AACTA chr2R:21159701-21159821 72 2.63e-05 AAACATCTGT GTGTGTGT GGGGGTATGC chr2R:23864813-23864933 100 3.75e-05 CTGCAGGAGT GTGCGTGC ACGCAGCAAT chr2R:15931417-15931537 82 3.75e-05 GAACGTGTGT GTGCGTGC GTCGCTTTGT chr3R:9343033-9343153 109 3.75e-05 GTATATACAT GTGCGTGC ATTT chr2R:10078360-10078480 86 3.75e-05 AAGCAAGCGC GTGCGTGC ATGATAGCGA chrX:5690231-5690351 28 3.75e-05 taattcgcgt gtgcgtgc gcatgtgtgt chr4:488947-489067 28 3.75e-05 taaatggtgc gtgcgtgc acatactggc chrX:12742498-12742618 83 5.16e-05 CCGTACACAT GTGCTTGT GCATGGTACG chr3L:3225413-3225533 27 5.16e-05 TTTGGGTAGC GTGCTTGT ATTTGTGCGG chr3L:23250462-23250582 71 6.60e-05 GTACAAGTCA GTGcatgt acagatacca chr2L:20082812-20082932 52 6.60e-05 gctcgtgctc gtgcatgt cctcCTCGTC chrX:13761893-13762013 50 6.60e-05 TCTTTTGTTT GTGCATGT CGTGACATGT chr3L:13450744-13450864 104 9.41e-05 CGCGTGTCGA GTGTTTGT GATAGAAAC chr3R:26026840-26026960 99 9.41e-05 GGGAATGATG GTGTTTGT ACACGTGACG chrX:5897468-5897588 49 9.41e-05 CTTTTCCAAC GTGTTTGT GCACGCAAAC chrX:10086724-10086844 108 9.41e-05 CGCGCAGCAG GTGTTTGT TTTTG chr2L:16287146-16287266 52 9.41e-05 ATGTTTAATC GTGTTTGT GTATTTGCTT chr3R:16453151-16453271 15 1.10e-04 CCTGCGCTTT GTGTATGT GTGCGAGAGC chr2L:17260704-17260824 82 1.24e-04 AGACGAAACC GTTCGTGT CGTGGGACCG chr3R:23279082-23279202 69 1.24e-04 gttcgcgttc gttcgtgt tcgGCAGGAG chr3R:24582092-24582212 70 1.50e-04 CGACAGGCGC GTGCATGC GCCAAATGCC chrX:19578318-19578438 41 1.50e-04 ATGCATGTCT GTGCATGC GGAGGCGTTT chr2L:2966202-2966322 56 1.50e-04 ACAATTTTTG GTGCATGC GTGTGACACG chrX:19510299-19510419 49 1.50e-04 CCACACGAAC GTGCATGC TTAGTCTATT chrX:13805749-13805869 55 1.66e-04 AGCTTGTTTG GTTTGTGT GTTGACTAGT chr2L:1157489-1157609 60 1.80e-04 ACAAGCAAAC GTGTTTGC TCTTGCGTAA chrX:19897646-19897766 19 1.80e-04 ATTGTCGTCG GTGTTTGC GTGCTGTCTT chr2L:10249803-10249923 15 1.94e-04 TAGCGTTCAT GTGTATGC ATGCCGTTGC chr2L:10301380-10301500 35 2.07e-04 TGCTCGACAT GTTCGTGC AGAATCGCTT chr2L:16787593-16787713 20 2.23e-04 GTCTTGACCC GTTCTTGT TGTGTCGGAA chr2L:5068849-5068969 81 2.39e-04 ACACACTTTC GTTCATGT TTCAATTCCA chr3L:18618210-18618330 32 2.53e-04 ATTCAATGTG GTTTGTGC ATCGAATAAG chr3R:5736888-5737008 45 2.71e-04 CAAGAGGTTT GTTTTTGT TGTTGTAACC chrX:10087401-10087521 12 2.71e-04 AGTGAGGTAA GTTTTTGT TGTTGTACTC chr2R:16611384-16611504 25 2.71e-04 GCGTGGTTAT GTTTTTGT GTTAACTGTT chrX:16654920-16655040 105 2.89e-04 CGCCGCTTTG GTTTATGT CCTCACTC chr3L:15954187-15954307 47 3.51e-04 GCGTTCGCAT GTTTATGC ACGTTGATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14832570-14832690 1.2e-05 100_[+2]_12 chrX:9155835-9155955 1.2e-05 13_[+2]_99 chr2L:19452850-19452970 1.2e-05 89_[+2]_23 chrX:8271615-8271735 1.2e-05 90_[+2]_22 chr3R:20593550-20593670 1.2e-05 67_[+2]_45 chr3R:27253791-27253911 1.2e-05 88_[+2]_24 chr2L:18823599-18823719 2.6e-05 79_[+2]_33 chr3L:20664094-20664214 2.6e-05 96_[+2]_16 chr2L:5083320-5083440 2.6e-05 23_[+2]_89 chr3R:31271202-31271322 2.6e-05 2_[+2]_110 chrX:8905897-8906017 2.6e-05 107_[+2]_5 chr2R:21159701-21159821 2.6e-05 71_[+2]_41 chr2R:23864813-23864933 3.7e-05 99_[+2]_13 chr2R:15931417-15931537 3.7e-05 81_[+2]_31 chr3R:9343033-9343153 3.7e-05 108_[+2]_4 chr2R:10078360-10078480 3.7e-05 85_[+2]_27 chrX:5690231-5690351 3.7e-05 27_[+2]_85 chr4:488947-489067 3.7e-05 27_[+2]_85 chrX:12742498-12742618 5.2e-05 82_[+2]_30 chr3L:3225413-3225533 5.2e-05 26_[+2]_86 chr3L:23250462-23250582 6.6e-05 70_[+2]_42 chr2L:20082812-20082932 6.6e-05 51_[+2]_61 chrX:13761893-13762013 6.6e-05 49_[+2]_63 chr3L:13450744-13450864 9.4e-05 103_[+2]_9 chr3R:26026840-26026960 9.4e-05 98_[+2]_14 chrX:5897468-5897588 9.4e-05 48_[+2]_64 chrX:10086724-10086844 9.4e-05 107_[+2]_5 chr2L:16287146-16287266 9.4e-05 51_[+2]_61 chr3R:16453151-16453271 0.00011 14_[+2]_98 chr2L:17260704-17260824 0.00012 81_[+2]_31 chr3R:23279082-23279202 0.00012 68_[+2]_44 chr3R:24582092-24582212 0.00015 69_[+2]_43 chrX:19578318-19578438 0.00015 40_[+2]_72 chr2L:2966202-2966322 0.00015 55_[+2]_57 chrX:19510299-19510419 0.00015 48_[+2]_64 chrX:13805749-13805869 0.00017 54_[+2]_58 chr2L:1157489-1157609 0.00018 59_[+2]_53 chrX:19897646-19897766 0.00018 18_[+2]_94 chr2L:10249803-10249923 0.00019 14_[+2]_98 chr2L:10301380-10301500 0.00021 34_[+2]_78 chr2L:16787593-16787713 0.00022 19_[+2]_93 chr2L:5068849-5068969 0.00024 80_[+2]_32 chr3L:18618210-18618330 0.00025 31_[+2]_81 chr3R:5736888-5737008 0.00027 44_[+2]_68 chrX:10087401-10087521 0.00027 11_[+2]_101 chr2R:16611384-16611504 0.00027 24_[+2]_88 chrX:16654920-16655040 0.00029 104_[+2]_8 chr3L:15954187-15954307 0.00035 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGYDTGY width=8 seqs=48 chrX:14832570-14832690 ( 101) GTGCGTGT 1 chrX:9155835-9155955 ( 14) GTGCGTGT 1 chr2L:19452850-19452970 ( 90) GTGCGTGT 1 chrX:8271615-8271735 ( 91) GTGCGTGT 1 chr3R:20593550-20593670 ( 68) GTGCGTGT 1 chr3R:27253791-27253911 ( 89) GTGCGTGT 1 chr2L:18823599-18823719 ( 80) GTGTGTGT 1 chr3L:20664094-20664214 ( 97) GTGTGTGT 1 chr2L:5083320-5083440 ( 24) GTGTGTGT 1 chr3R:31271202-31271322 ( 3) GTGTGTGT 1 chrX:8905897-8906017 ( 108) GTGTGTGT 1 chr2R:21159701-21159821 ( 72) GTGTGTGT 1 chr2R:23864813-23864933 ( 100) GTGCGTGC 1 chr2R:15931417-15931537 ( 82) GTGCGTGC 1 chr3R:9343033-9343153 ( 109) GTGCGTGC 1 chr2R:10078360-10078480 ( 86) GTGCGTGC 1 chrX:5690231-5690351 ( 28) GTGCGTGC 1 chr4:488947-489067 ( 28) GTGCGTGC 1 chrX:12742498-12742618 ( 83) GTGCTTGT 1 chr3L:3225413-3225533 ( 27) GTGCTTGT 1 chr3L:23250462-23250582 ( 71) GTGCATGT 1 chr2L:20082812-20082932 ( 52) GTGCATGT 1 chrX:13761893-13762013 ( 50) GTGCATGT 1 chr3L:13450744-13450864 ( 104) GTGTTTGT 1 chr3R:26026840-26026960 ( 99) GTGTTTGT 1 chrX:5897468-5897588 ( 49) GTGTTTGT 1 chrX:10086724-10086844 ( 108) GTGTTTGT 1 chr2L:16287146-16287266 ( 52) GTGTTTGT 1 chr3R:16453151-16453271 ( 15) GTGTATGT 1 chr2L:17260704-17260824 ( 82) GTTCGTGT 1 chr3R:23279082-23279202 ( 69) GTTCGTGT 1 chr3R:24582092-24582212 ( 70) GTGCATGC 1 chrX:19578318-19578438 ( 41) GTGCATGC 1 chr2L:2966202-2966322 ( 56) GTGCATGC 1 chrX:19510299-19510419 ( 49) GTGCATGC 1 chrX:13805749-13805869 ( 55) GTTTGTGT 1 chr2L:1157489-1157609 ( 60) GTGTTTGC 1 chrX:19897646-19897766 ( 19) GTGTTTGC 1 chr2L:10249803-10249923 ( 15) GTGTATGC 1 chr2L:10301380-10301500 ( 35) GTTCGTGC 1 chr2L:16787593-16787713 ( 20) GTTCTTGT 1 chr2L:5068849-5068969 ( 81) GTTCATGT 1 chr3L:18618210-18618330 ( 32) GTTTGTGC 1 chr3R:5736888-5737008 ( 45) GTTTTTGT 1 chrX:10087401-10087521 ( 12) GTTTTTGT 1 chr2R:16611384-16611504 ( 25) GTTTTTGT 1 chrX:16654920-16655040 ( 105) GTTTATGT 1 chr3L:15954187-15954307 ( 47) GTTTATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 1.9e-003 -1223 -1223 211 -1223 -1223 -1223 -1223 193 -1223 -1223 169 -7 -1223 120 -1223 80 -11 -1223 104 4 -1223 -1223 -1223 193 -1223 -1223 211 -1223 -1223 50 -1223 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.9e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.541667 0.000000 0.458333 0.250000 0.000000 0.479167 0.270833 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGYDTGY MEME-2 regular expression -------------------------------------------------------------------------------- GT[GT][CT][GTA]TG[TC] -------------------------------------------------------------------------------- Time 14.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAMACAC MEME-3 width = 8 sites = 24 llr = 218 E-value = 9.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:84a:a: pos.-specific C :a:6:a:8 probability G 9:2::::: matrix T :::::::2 bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 ** *** Relative 1.3 *** **** Entropy 1.1 ******** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCACACAC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12889218-12889338 3 1.40e-05 ac gcacacac agacacacac chrX:18357829-18357949 64 1.40e-05 acatacgcac gcacacac actcacgcgc chrX:10814861-10814981 71 1.40e-05 gcacagacac gcacacac acacacaaac chr3L:10691005-10691125 39 1.40e-05 CACCGCTGGC GCACACAC ACATGCACAA chr2L:16287362-16287482 67 1.40e-05 CACTAGCACT GCACACAC Aagagagaga chr2R:13592792-13592912 29 1.40e-05 tcacacgctc gcacacac acacttgcaa chrX:11797019-11797139 87 1.40e-05 TCCATGATGT GCACACAC TGTTATCCAA chr2L:6465076-6465196 81 1.40e-05 acgcacacag gcacacac ttgcacgcGT chr2L:4822380-4822500 34 1.40e-05 cacgcgcgta gcacacac accacacgca chr2R:17430952-17431072 109 3.00e-05 CTATTAGTTA GCAAACAC AAAT chr3R:31086504-31086624 44 3.00e-05 AGAGGAAAAT GCAAACAC AGTAACACTA chr2L:7056692-7056812 72 3.00e-05 acacacacat gcaaacac acacaGTAGC chrX:6866079-6866199 48 4.56e-05 gcagacagac gcacacat gcaggcaCAT chr3R:13685145-13685265 65 4.56e-05 CGCGTATTCT GCACACAT TGTCATGCAT chr3L:18618210-18618330 70 5.77e-05 TTCGAACCAA GCGCACAC TATAGTTGTC chrX:8907572-8907692 31 5.77e-05 TCACTGTTCT GCGCACAC CGTTGCACGA chr3L:11492584-11492704 69 7.55e-05 ATGCAGAGCC GCAAACAT GTGCCGTTAA chr3R:24269927-24270047 35 7.55e-05 GGGCACGTCT GCAAACAT GGACACGCAT chr2R:23894799-23894919 23 7.55e-05 GCCAACAAAT GCAAACAT GATGTGGAAC chr2R:21128503-21128623 46 8.92e-05 GCCATTCGCA GCGAACAC TTATCGATAC chr3L:11489804-11489924 32 8.92e-05 TCACCCGGAG GCGAACAC AACAAGCGGC chrX:9658341-9658461 4 1.05e-04 cac acacacac gtaacacgca chrX:19729579-19729699 58 1.24e-04 AATCGCATCC ACAAACAC GCATAGACAC chr3R:23053253-23053373 3 1.24e-04 AA ACAAACAC AAACAAGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12889218-12889338 1.4e-05 2_[+3]_110 chrX:18357829-18357949 1.4e-05 63_[+3]_49 chrX:10814861-10814981 1.4e-05 70_[+3]_42 chr3L:10691005-10691125 1.4e-05 38_[+3]_74 chr2L:16287362-16287482 1.4e-05 66_[+3]_46 chr2R:13592792-13592912 1.4e-05 28_[+3]_84 chrX:11797019-11797139 1.4e-05 86_[+3]_26 chr2L:6465076-6465196 1.4e-05 80_[+3]_32 chr2L:4822380-4822500 1.4e-05 33_[+3]_79 chr2R:17430952-17431072 3e-05 108_[+3]_4 chr3R:31086504-31086624 3e-05 43_[+3]_69 chr2L:7056692-7056812 3e-05 71_[+3]_41 chrX:6866079-6866199 4.6e-05 47_[+3]_65 chr3R:13685145-13685265 4.6e-05 64_[+3]_48 chr3L:18618210-18618330 5.8e-05 69_[+3]_43 chrX:8907572-8907692 5.8e-05 30_[+3]_82 chr3L:11492584-11492704 7.5e-05 68_[+3]_44 chr3R:24269927-24270047 7.5e-05 34_[+3]_78 chr2R:23894799-23894919 7.5e-05 22_[+3]_90 chr2R:21128503-21128623 8.9e-05 45_[+3]_67 chr3L:11489804-11489924 8.9e-05 31_[+3]_81 chrX:9658341-9658461 0.00011 3_[+3]_109 chrX:19729579-19729699 0.00012 57_[+3]_55 chr3R:23053253-23053373 0.00012 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAMACAC width=8 seqs=24 chrX:12889218-12889338 ( 3) GCACACAC 1 chrX:18357829-18357949 ( 64) GCACACAC 1 chrX:10814861-10814981 ( 71) GCACACAC 1 chr3L:10691005-10691125 ( 39) GCACACAC 1 chr2L:16287362-16287482 ( 67) GCACACAC 1 chr2R:13592792-13592912 ( 29) GCACACAC 1 chrX:11797019-11797139 ( 87) GCACACAC 1 chr2L:6465076-6465196 ( 81) GCACACAC 1 chr2L:4822380-4822500 ( 34) GCACACAC 1 chr2R:17430952-17431072 ( 109) GCAAACAC 1 chr3R:31086504-31086624 ( 44) GCAAACAC 1 chr2L:7056692-7056812 ( 72) GCAAACAC 1 chrX:6866079-6866199 ( 48) GCACACAT 1 chr3R:13685145-13685265 ( 65) GCACACAT 1 chr3L:18618210-18618330 ( 70) GCGCACAC 1 chrX:8907572-8907692 ( 31) GCGCACAC 1 chr3L:11492584-11492704 ( 69) GCAAACAT 1 chr3R:24269927-24270047 ( 35) GCAAACAT 1 chr2R:23894799-23894919 ( 23) GCAAACAT 1 chr2R:21128503-21128623 ( 46) GCGAACAC 1 chr3L:11489804-11489924 ( 32) GCGAACAC 1 chrX:9658341-9658461 ( 4) ACACACAC 1 chrX:19729579-19729699 ( 58) ACAAACAC 1 chr3R:23053253-23053373 ( 3) ACAAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 9.3e+002 -110 -1123 191 -1123 -1123 209 -1123 -1123 163 -1123 -48 -1123 63 131 -1123 -1123 189 -1123 -1123 -1123 -1123 209 -1123 -1123 189 -1123 -1123 -1123 -1123 175 -1123 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 9.3e+002 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.416667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.791667 0.000000 0.208333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAMACAC MEME-3 regular expression -------------------------------------------------------------------------------- GCA[CA]ACA[CT] -------------------------------------------------------------------------------- Time 20.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CATGTTYR MEME-4 width = 8 sites = 29 llr = 259 E-value = 3.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:::::4 pos.-specific C a::::13: probability G :::a:::6 matrix T :1a:a97: bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ******** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATGTTTG consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2464861-2464981 56 1.63e-05 CGTGTTTGAG CATGTTTG TTGCCTCGAG chrX:5690231-5690351 47 1.63e-05 catgtgtgtg catgtttg tgtCTAGCCT chr2R:21159701-21159821 89 1.63e-05 TGGGGGTATG CATGTTTG TGCAGGCAGA chrX:13761893-13762013 63 1.63e-05 CATGTCGTGA CATGTTTG CTTTGACTCT chr2L:4838748-4838868 89 3.53e-05 CGAGATCTTT CATGTTTA CCTAGCAAGC chrX:6866079-6866199 63 3.53e-05 catgcaggca CATGTTTA GTCGTGTTTA chr2L:13234888-13235008 37 3.53e-05 ATCTACTGGT CATGTTTA TTCTTGCGTG chrX:17829780-17829900 74 3.53e-05 CAAATTCATG CATGTTTA TTCAGGCTCA chrX:19631379-19631499 52 3.53e-05 GCTCTTTGCA CATGTTTA AACGTGCAGC chr2L:6465076-6465196 48 3.53e-05 ATTCGGTATT CATGTTTa cgcacgcacg chrX:10087401-10087521 35 3.53e-05 TACTCGTTTT CATGTTTA ATTATGTTGC chr2L:16287146-16287266 41 3.53e-05 GTACGGCGGA CATGTTTA ATCGTGTTTG chr3L:5785802-5785922 66 3.53e-05 CAAGTTTCAA CATGTTTA TTAGGAGCTC chr3L:1463736-1463856 5 5.00e-05 ACAA CATGTTCG AAGTGGCTCT chrX:11715406-11715526 61 5.00e-05 CGCGTCACTG CATGTTCG CTGCTTTTGT chrX:12742498-12742618 29 5.00e-05 CAGATGCTGT CATGTTCG TGCTCGCACC chrX:6701013-6701133 8 5.00e-05 TACACCG CATGTTCG GCGATCACTA chrX:9605680-9605800 39 5.00e-05 CAAGTTAAAG CATGTTCG TTAACCGGAA chr3L:14953203-14953323 36 6.70e-05 CAAGCAGGGA CATGTTCA TAGCATGTTA chr3R:6768418-6768538 66 6.70e-05 CGTAGCGCGC CATGTTCA AACGAGATCC chrX:10835477-10835597 8 6.70e-05 GTCTCGT CATGTTCA AGCACGTCGC chr3L:9421756-9421876 40 6.70e-05 TGCATGAGAA CATGTTCA AACATGCACA chrX:3428956-3429076 57 8.17e-05 CAGGCTGCGA CATGTCTG CTCCTGACAA chr3R:9879796-9879916 33 8.17e-05 CCTGGCTGAG CATGTCTG CTCCTGCTTC chr2R:23187865-23187985 37 8.17e-05 ATTTCCCGGC CATGTCTG TGTGCTGAGC chrX:13805749-13805869 47 1.15e-04 TGTGTCTTAG CTTGTTTG GTTTGTGTGT chr3R:24720079-24720199 68 1.15e-04 TGGCAACAAA CTTGTTTG AGTCAAATGG chr2L:7203622-7203742 93 1.15e-04 ATTTGACAGG CTTGTTTG TTAGTGTCAT chr3R:18924370-18924490 52 1.28e-04 CAGGAAAAAT CATGTCCG ATTTTTGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2464861-2464981 1.6e-05 55_[+4]_57 chrX:5690231-5690351 1.6e-05 46_[+4]_66 chr2R:21159701-21159821 1.6e-05 88_[+4]_24 chrX:13761893-13762013 1.6e-05 62_[+4]_50 chr2L:4838748-4838868 3.5e-05 88_[+4]_24 chrX:6866079-6866199 3.5e-05 62_[+4]_50 chr2L:13234888-13235008 3.5e-05 36_[+4]_76 chrX:17829780-17829900 3.5e-05 73_[+4]_39 chrX:19631379-19631499 3.5e-05 51_[+4]_61 chr2L:6465076-6465196 3.5e-05 47_[+4]_65 chrX:10087401-10087521 3.5e-05 34_[+4]_78 chr2L:16287146-16287266 3.5e-05 40_[+4]_72 chr3L:5785802-5785922 3.5e-05 65_[+4]_47 chr3L:1463736-1463856 5e-05 4_[+4]_108 chrX:11715406-11715526 5e-05 60_[+4]_52 chrX:12742498-12742618 5e-05 28_[+4]_84 chrX:6701013-6701133 5e-05 7_[+4]_105 chrX:9605680-9605800 5e-05 38_[+4]_74 chr3L:14953203-14953323 6.7e-05 35_[+4]_77 chr3R:6768418-6768538 6.7e-05 65_[+4]_47 chrX:10835477-10835597 6.7e-05 7_[+4]_105 chr3L:9421756-9421876 6.7e-05 39_[+4]_73 chrX:3428956-3429076 8.2e-05 56_[+4]_56 chr3R:9879796-9879916 8.2e-05 32_[+4]_80 chr2R:23187865-23187985 8.2e-05 36_[+4]_76 chrX:13805749-13805869 0.00011 46_[+4]_66 chr3R:24720079-24720199 0.00011 67_[+4]_45 chr2L:7203622-7203742 0.00011 92_[+4]_20 chr3R:18924370-18924490 0.00013 51_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATGTTYR width=8 seqs=29 chr3L:2464861-2464981 ( 56) CATGTTTG 1 chrX:5690231-5690351 ( 47) CATGTTTG 1 chr2R:21159701-21159821 ( 89) CATGTTTG 1 chrX:13761893-13762013 ( 63) CATGTTTG 1 chr2L:4838748-4838868 ( 89) CATGTTTA 1 chrX:6866079-6866199 ( 63) CATGTTTA 1 chr2L:13234888-13235008 ( 37) CATGTTTA 1 chrX:17829780-17829900 ( 74) CATGTTTA 1 chrX:19631379-19631499 ( 52) CATGTTTA 1 chr2L:6465076-6465196 ( 48) CATGTTTA 1 chrX:10087401-10087521 ( 35) CATGTTTA 1 chr2L:16287146-16287266 ( 41) CATGTTTA 1 chr3L:5785802-5785922 ( 66) CATGTTTA 1 chr3L:1463736-1463856 ( 5) CATGTTCG 1 chrX:11715406-11715526 ( 61) CATGTTCG 1 chrX:12742498-12742618 ( 29) CATGTTCG 1 chrX:6701013-6701133 ( 8) CATGTTCG 1 chrX:9605680-9605800 ( 39) CATGTTCG 1 chr3L:14953203-14953323 ( 36) CATGTTCA 1 chr3R:6768418-6768538 ( 66) CATGTTCA 1 chrX:10835477-10835597 ( 8) CATGTTCA 1 chr3L:9421756-9421876 ( 40) CATGTTCA 1 chrX:3428956-3429076 ( 57) CATGTCTG 1 chr3R:9879796-9879916 ( 33) CATGTCTG 1 chr2R:23187865-23187985 ( 37) CATGTCTG 1 chrX:13805749-13805869 ( 47) CTTGTTTG 1 chr3R:24720079-24720199 ( 68) CTTGTTTG 1 chr2L:7203622-7203742 ( 93) CTTGTTTG 1 chr3R:18924370-18924490 ( 52) CATGTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.81167 E= 3.9e+000 -1150 209 -1150 -1150 174 -1150 -1150 -135 -1150 -1150 -1150 193 -1150 -1150 211 -1150 -1150 -1150 -1150 193 -1150 -77 -1150 171 -1150 55 -1150 132 74 -1150 125 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.9e+000 0.000000 1.000000 0.000000 0.000000 0.896552 0.000000 0.000000 0.103448 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.137931 0.000000 0.862069 0.000000 0.344828 0.000000 0.655172 0.448276 0.000000 0.551724 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGTTYR MEME-4 regular expression -------------------------------------------------------------------------------- CATGTT[TC][GA] -------------------------------------------------------------------------------- Time 26.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGMGCGM MEME-5 width = 8 sites = 19 llr = 180 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::53::4 pos.-specific C :a:5:a:6 probability G a:a:7:a: matrix T :::::::: bits 2.1 *** ** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus AA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20593550-20593670 37 8.99e-06 GTGTATTGGT GCGCGCGC CCtgtgtgtg chr3R:13685145-13685265 50 8.99e-06 TAGTGTGTGA GCGCGCGC GTATTCTGCA chrX:7959771-7959891 59 8.99e-06 AACACTCTGC GCGCGCGC TCTGTGTGCC chrX:10086724-10086844 95 8.99e-06 AGTGCAAGTT GCGCGCGC AGCAGGTGTT chr3L:1463736-1463856 98 1.92e-05 CGTGCGAGCC GCGAGCGC GAGATCATCA chr3R:24720309-24720429 17 1.92e-05 CGCATCATTT GCGAGCGC AACTTAACTA chrX:19631379-19631499 80 1.92e-05 AGCGAAAACG GCGAGCGC AGAGTTGCCA chr3L:15954187-15954307 4 1.92e-05 ACA GCGAGCGC GCCTCTTTAA chr2L:5421893-5422013 11 1.92e-05 gagagagaga gcgagCGC GGTTGATGGG chr3L:13450744-13450864 33 2.95e-05 CTTTCAAGAC GCGCGCGA AGCTGCGGAC chrX:18357829-18357949 78 3.99e-05 acacactcac gcgcacgc actgacacgc chrX:1409105-1409225 13 3.99e-05 CGGCGCCACT GCGCACGC GTCGCTGGAA chrX:18864249-18864369 36 3.99e-05 AAATCGACAA Gcgcacgc atgcacacac chr3R:19096848-19096968 88 5.16e-05 CTGTTCAGTC GCGAGCGA ATCGAGTTGG chr2R:15610969-15611089 45 5.16e-05 CGGCATCACa gcgagcga cagagaaaga chr3R:24582092-24582212 34 5.16e-05 CCCGCCGCGA GCGAGCGA GATGGAAGCT chr2L:1157489-1157609 40 7.53e-05 TGACTCATTC GCGCACGA ATACAAGCAA chrX:6866079-6866199 92 7.53e-05 ATAGCAAAGC GCGCACGA AACGGGGCCT chr3R:16254955-16255075 108 8.89e-05 AGCTGCAGAC GCGAACGA GAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20593550-20593670 9e-06 36_[+5]_76 chr3R:13685145-13685265 9e-06 49_[+5]_63 chrX:7959771-7959891 9e-06 58_[+5]_54 chrX:10086724-10086844 9e-06 94_[+5]_18 chr3L:1463736-1463856 1.9e-05 97_[+5]_15 chr3R:24720309-24720429 1.9e-05 16_[+5]_96 chrX:19631379-19631499 1.9e-05 79_[+5]_33 chr3L:15954187-15954307 1.9e-05 3_[+5]_109 chr2L:5421893-5422013 1.9e-05 10_[+5]_102 chr3L:13450744-13450864 2.9e-05 32_[+5]_80 chrX:18357829-18357949 4e-05 77_[+5]_35 chrX:1409105-1409225 4e-05 12_[+5]_100 chrX:18864249-18864369 4e-05 35_[+5]_77 chr3R:19096848-19096968 5.2e-05 87_[+5]_25 chr2R:15610969-15611089 5.2e-05 44_[+5]_68 chr3R:24582092-24582212 5.2e-05 33_[+5]_79 chr2L:1157489-1157609 7.5e-05 39_[+5]_73 chrX:6866079-6866199 7.5e-05 91_[+5]_21 chr3R:16254955-16255075 8.9e-05 107_[+5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGMGCGM width=8 seqs=19 chr3R:20593550-20593670 ( 37) GCGCGCGC 1 chr3R:13685145-13685265 ( 50) GCGCGCGC 1 chrX:7959771-7959891 ( 59) GCGCGCGC 1 chrX:10086724-10086844 ( 95) GCGCGCGC 1 chr3L:1463736-1463856 ( 98) GCGAGCGC 1 chr3R:24720309-24720429 ( 17) GCGAGCGC 1 chrX:19631379-19631499 ( 80) GCGAGCGC 1 chr3L:15954187-15954307 ( 4) GCGAGCGC 1 chr2L:5421893-5422013 ( 11) GCGAGCGC 1 chr3L:13450744-13450864 ( 33) GCGCGCGA 1 chrX:18357829-18357949 ( 78) GCGCACGC 1 chrX:1409105-1409225 ( 13) GCGCACGC 1 chrX:18864249-18864369 ( 36) GCGCACGC 1 chr3R:19096848-19096968 ( 88) GCGAGCGA 1 chr2R:15610969-15611089 ( 45) GCGAGCGA 1 chr3R:24582092-24582212 ( 34) GCGAGCGA 1 chr2L:1157489-1157609 ( 40) GCGCACGA 1 chrX:6866079-6866199 ( 92) GCGCACGA 1 chr3R:16254955-16255075 ( 108) GCGAACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.6e+003 -1089 -1089 211 -1089 -1089 209 -1089 -1089 -1089 -1089 211 -1089 82 116 -1089 -1089 23 -1089 156 -1089 -1089 209 -1089 -1089 -1089 -1089 211 -1089 45 142 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.473684 0.526316 0.000000 0.000000 0.315789 0.000000 0.684211 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.368421 0.631579 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGCGM MEME-5 regular expression -------------------------------------------------------------------------------- GCG[CA][GA]CG[CA] -------------------------------------------------------------------------------- Time 32.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9421756-9421876 2.59e-03 39_[+4(6.70e-05)]_1_[+1(2.96e-05)]_\ 64 chr3L:18187592-18187712 5.12e-02 120 chr2L:4354941-4355061 1.90e-01 120 chr3L:5785802-5785922 1.73e-01 65_[+4(3.53e-05)]_47 chrX:19510299-19510419 6.21e-03 120 chr3R:18924370-18924490 1.32e-03 120 chr3L:15838111-15838231 4.38e-01 120 chrX:13761893-13762013 9.45e-03 49_[+2(6.60e-05)]_5_[+4(1.63e-05)]_\ 50 chr2L:7203622-7203742 4.83e-03 120 chrX:2033280-2033400 1.25e-03 120 chr3R:9724764-9724884 8.61e-01 120 chr2L:5068849-5068969 1.72e-03 120 chr2L:16787593-16787713 1.23e-04 57_[+1(1.40e-05)]_55 chr3L:11343757-11343877 6.27e-01 120 chr3L:1294938-1295058 1.37e-01 120 chr3L:11489804-11489924 1.33e-02 31_[+3(8.92e-05)]_81 chr2L:16287146-16287266 7.72e-03 40_[+4(3.53e-05)]_3_[+2(9.41e-05)]_\ 61 chr3L:1366868-1366988 6.81e-01 120 chr2R:21159498-21159618 4.63e-01 120 chr3R:23053253-23053373 4.77e-03 120 chr2L:2966202-2966322 4.76e-03 88_[+1(9.70e-05)]_24 chr2R:21159701-21159821 5.34e-04 69_[+2(2.63e-05)]_11_[+4(1.63e-05)]_\ 24 chrX:15019618-15019738 4.07e-03 58_[+3(1.40e-05)]_54 chrX:15089406-15089526 2.19e-01 120 chrX:10086724-10086844 3.89e-03 94_[+5(8.99e-06)]_5_[+2(9.41e-05)]_\ 5 chr3L:14966598-14966718 4.11e-01 120 chr3R:17645387-17645507 2.99e-01 120 chr2R:16611384-16611504 2.06e-04 72_[+1(1.40e-05)]_40 chrX:16276650-16276770 1.18e-01 120 chr3R:27253791-27253911 2.18e-03 74_[+2(7.84e-05)]_6_[+2(1.24e-05)]_\ 24 chrX:15584122-15584242 2.33e-02 120 chrX:6689127-6689247 1.25e-03 120 chrX:10087401-10087521 1.20e-03 34_[+4(3.53e-05)]_42_[+1(9.70e-05)]_\ 28 chr2L:4822380-4822500 1.14e-04 12_[+3(1.40e-05)]_13_[+3(1.40e-05)]_\ 3_[+1(1.40e-05)]_68 chr2L:6465076-6465196 3.04e-05 47_[+4(3.53e-05)]_25_[+3(1.40e-05)]_\ 32 chr2L:5421893-5422013 9.17e-03 10_[+5(1.92e-05)]_102 chr2R:7596070-7596190 3.08e-01 120 chr3L:14968273-14968393 4.12e-01 120 chr3L:15954187-15954307 4.05e-04 3_[+5(1.92e-05)]_32_[+4(3.53e-05)]_\ 69 chr4:488947-489067 7.48e-05 10_[+1(9.70e-05)]_5_[+2(3.75e-05)]_\ 43_[+1(9.70e-05)]_18_[+1(9.70e-05)]_12 chrX:19578318-19578438 1.51e-05 2_[+1(4.59e-05)]_2_[+1(9.70e-05)]_\ 13_[+4(8.17e-05)]_79 chrX:18864249-18864369 3.90e-05 35_[+5(3.99e-05)]_2_[+3(1.40e-05)]_\ 67 chrX:7959771-7959891 9.40e-04 56_[+5(8.99e-06)]_56 chr2R:23187865-23187985 1.32e-01 36_[+4(8.17e-05)]_76 chrX:19631379-19631499 1.19e-03 51_[+4(3.53e-05)]_20_[+5(1.92e-05)]_\ 33 chrX:21345511-21345631 2.00e-01 120 chrX:17829780-17829900 4.68e-02 73_[+4(3.53e-05)]_39 chrX:19897646-19897766 9.35e-03 120 chrX:8907572-8907692 3.57e-04 30_[+3(5.77e-05)]_82 chrX:8419750-8419870 5.56e-02 120 chr3L:12414290-12414410 7.97e-04 50_[+1(1.40e-05)]_62 chrX:11797019-11797139 1.46e-03 [+1(6.40e-05)]_4_[+1(4.59e-05)]_66_\ [+3(1.40e-05)]_26 chrX:7196136-7196256 4.82e-02 120 chr3L:22742000-22742120 2.37e-02 120 chrX:19729579-19729699 1.41e-02 61_[+1(7.96e-05)]_2_[+1(1.40e-05)]_\ 41 chrX:8905897-8906017 4.42e-06 70_[+1(1.40e-05)]_29_[+2(2.63e-05)]_\ 5 chr3R:8848240-8848360 3.02e-01 120 chr3R:23053458-23053578 1.95e-02 120 chr3L:19635885-19636005 3.01e-02 120 chr3R:26006776-26006896 2.42e-01 120 chrX:5897468-5897588 1.36e-03 48_[+2(9.41e-05)]_64 chrX:1711338-1711458 5.12e-02 120 chr2L:10301380-10301500 3.45e-02 31_[+4(5.00e-05)]_81 chrX:10367117-10367237 5.78e-01 120 chr3R:4807723-4807843 6.99e-03 57_[+1(2.96e-05)]_55 chr2R:7367599-7367719 6.46e-02 56_[+1(2.96e-05)]_56 chr3R:23279082-23279202 6.38e-02 120 chr3L:18193930-18194050 7.81e-01 120 chr2L:21593176-21593296 2.72e-01 120 chrX:9605680-9605800 4.70e-02 38_[+4(5.00e-05)]_74 chr3L:548705-548825 7.05e-02 46_[+4(8.17e-05)]_66 chrX:1927981-1928101 3.43e-01 120 chrX:5690231-5690351 1.35e-04 4_[+2(2.63e-05)]_15_[+2(3.75e-05)]_\ 11_[+4(1.63e-05)]_66 chr2L:20082812-20082932 4.72e-02 51_[+2(6.60e-05)]_61 chr3L:11119703-11119823 6.74e-02 120 chr3L:2464861-2464981 4.44e-02 55_[+4(1.63e-05)]_57 chr3L:11251840-11251960 7.94e-01 120 chr3R:9879796-9879916 2.22e-01 32_[+4(8.17e-05)]_80 chrX:6701013-6701133 6.56e-04 7_[+4(5.00e-05)]_40_[+1(7.96e-05)]_\ 57 chr3L:225293-225413 2.51e-01 120 chr2R:9683796-9683916 4.62e-01 120 chr2R:13592792-13592912 6.05e-05 28_[+3(1.40e-05)]_12_[+1(1.40e-05)]_\ 64 chrX:16654920-16655040 1.47e-01 120 chr3R:24582092-24582212 8.41e-04 29_[+5(5.16e-05)]_17_[+5(5.16e-05)]_\ 58 chrX:16296244-16296364 1.21e-01 120 chr2R:15610969-15611089 1.38e-01 44_[+5(5.16e-05)]_68 chrX:20330273-20330393 5.54e-02 120 chr2L:13234888-13235008 1.74e-02 36_[+4(3.53e-05)]_76 chrX:10835477-10835597 7.70e-02 7_[+4(6.70e-05)]_105 chrX:19207588-19207708 1.00e-01 120 chr2L:7056692-7056812 1.03e-04 36_[+1(2.96e-05)]_11_[+1(1.40e-05)]_\ 8_[+3(3.00e-05)]_41 chr2L:16287362-16287482 1.03e-03 51_[+3(1.40e-05)]_7_[+3(1.40e-05)]_\ 46 chrX:1409105-1409225 6.94e-03 12_[+5(3.99e-05)]_100 chr3R:19096848-19096968 8.45e-03 87_[+5(5.16e-05)]_25 chr3R:16453151-16453271 4.75e-02 120 chrX:2065331-2065451 9.86e-01 120 chr2R:23894799-23894919 1.26e-01 22_[+3(7.55e-05)]_90 chr3R:29503604-29503724 4.73e-01 120 chrX:13820240-13820360 6.10e-01 120 chr3R:13685145-13685265 1.86e-06 9_[+3(1.40e-05)]_32_[+5(8.99e-06)]_\ 7_[+3(4.56e-05)]_48 chrX:17051004-17051124 5.47e-02 120 chrX:6866079-6866199 1.15e-05 47_[+3(4.56e-05)]_7_[+4(3.53e-05)]_\ 21_[+5(7.53e-05)]_21 chr2L:4197549-4197669 2.35e-02 120 chr3L:14969353-14969473 5.06e-01 120 chrX:3428956-3429076 1.29e-01 56_[+4(8.17e-05)]_56 chr4:458826-458946 8.51e-01 120 chr3R:31271202-31271322 1.70e-03 2_[+2(2.63e-05)]_110 chrX:1308530-1308650 1.93e-01 120 chr3R:24720079-24720199 6.47e-02 120 chr2R:11893379-11893499 5.51e-01 120 chrX:6192536-6192656 1.12e-01 120 chr3L:11254981-11255101 6.64e-01 120 chr3L:11295909-11296029 7.07e-02 120 chr2R:10652169-10652289 5.82e-03 3_[+1(2.96e-05)]_109 chr3L:23250462-23250582 4.64e-02 70_[+2(6.60e-05)]_42 chrX:17578274-17578394 9.23e-02 120 chr3R:6768418-6768538 8.21e-03 65_[+4(6.70e-05)]_47 chrX:9599345-9599465 1.63e-01 120 chr3R:24269927-24270047 3.31e-03 34_[+3(7.55e-05)]_2_[+1(7.96e-05)]_\ 68 chr2L:14014035-14014155 3.42e-01 120 chr2L:8111183-8111303 9.27e-01 120 chr2R:9869703-9869823 5.81e-01 120 chr2R:10078360-10078480 4.87e-03 85_[+2(3.75e-05)]_27 chr3R:28859415-28859535 9.62e-01 120 chrX:13284665-13284785 1.39e-03 66_[+3(1.40e-05)]_46 chr2R:16831205-16831325 5.19e-01 120 chrX:14955285-14955405 8.40e-01 120 chr3L:645227-645347 2.64e-01 120 chr3L:10691005-10691125 4.54e-04 38_[+3(1.40e-05)]_[+1(2.96e-05)]_66 chr3R:9343033-9343153 3.45e-05 78_[+1(2.96e-05)]_22_[+2(3.75e-05)]_\ 4 chr3L:1546604-1546724 1.87e-01 120 chr2R:6171534-6171654 3.44e-01 120 chr3L:20385796-20385916 4.56e-01 120 chr2R:20896382-20896502 6.15e-01 120 chr3R:29841614-29841734 2.98e-01 120 chr2L:5083320-5083440 1.04e-01 23_[+2(2.63e-05)]_89 chrX:529912-530032 9.85e-01 120 chr4:358232-358352 1.58e-01 120 chr3R:24720309-24720429 1.05e-01 16_[+5(1.92e-05)]_96 chr2R:17478176-17478296 2.85e-01 120 chr3L:14953203-14953323 1.41e-01 35_[+4(6.70e-05)]_77 chr3L:3225413-3225533 7.92e-02 26_[+2(5.16e-05)]_86 chr3L:20518596-20518716 7.51e-01 120 chr3R:20593550-20593670 8.47e-04 36_[+5(8.99e-06)]_3_[+2(2.63e-05)]_\ 2_[+2(1.24e-05)]_2_[+2(1.24e-05)]_45 chr3L:6550228-6550348 4.93e-02 27_[+1(2.96e-05)]_85 chrX:12463500-12463620 2.72e-03 72_[+1(4.59e-05)]_40 chr2R:10195074-10195194 1.04e-01 120 chr3R:26026840-26026960 3.26e-01 98_[+2(9.41e-05)]_14 chr3R:20558229-20558349 3.05e-01 120 chr3R:4479347-4479467 7.91e-01 120 chr2R:23601858-23601978 7.78e-01 120 chr3L:14118831-14118951 3.50e-03 120 chr2L:1157489-1157609 4.62e-05 39_[+5(7.53e-05)]_37_[+1(9.70e-05)]_\ 28 chr3R:31571937-31572057 9.54e-01 120 chrX:3776557-3776677 5.47e-02 120 chr2R:15931417-15931537 5.41e-02 75_[+2(2.63e-05)]_37 chrX:12742498-12742618 8.67e-04 28_[+4(5.00e-05)]_46_[+2(5.16e-05)]_\ 30 chr2L:4197755-4197875 2.55e-01 120 chrX:6179550-6179670 8.96e-02 120 chrX:10814861-10814981 6.66e-04 56_[+1(1.40e-05)]_2_[+1(1.40e-05)]_\ [+1(4.59e-05)]_38 chr2L:17260704-17260824 9.69e-02 120 chr2R:8655730-8655850 2.66e-02 46_[+1(4.59e-05)]_[+1(4.59e-05)]_2_\ [+1(7.96e-05)]_2_[+1(4.59e-05)]_[+1(4.59e-05)]_30 chr3L:20664094-20664214 1.03e-01 96_[+2(2.63e-05)]_16 chr2R:23864813-23864933 1.23e-02 99_[+2(3.75e-05)]_13 chr4:1051469-1051589 7.16e-01 120 chr3L:13845377-13845497 2.04e-01 120 chrX:19608443-19608563 5.48e-01 120 chrX:16105837-16105957 1.30e-01 120 chrX:13805749-13805869 1.78e-04 120 chr3L:22136124-22136244 3.04e-03 120 chrX:9605881-9606001 5.66e-01 120 chr3R:5086616-5086736 2.76e-01 120 chr2L:20066391-20066511 4.74e-01 120 chrX:8271615-8271735 7.02e-03 90_[+2(1.24e-05)]_22 chr2L:8522035-8522155 4.82e-04 [+1(1.40e-05)]_112 chr2R:8572689-8572809 4.64e-01 120 chrX:1773732-1773852 5.75e-01 120 chr3R:20154821-20154941 1.82e-01 120 chr2L:10249803-10249923 2.52e-03 46_[+1(6.40e-05)]_66 chr3L:13450744-13450864 4.40e-04 32_[+5(2.95e-05)]_63_[+2(9.41e-05)]_\ 9 chr3L:18618210-18618330 2.26e-03 69_[+3(5.77e-05)]_43 chr3L:19349908-19350028 4.66e-01 120 chr3L:11286695-11286815 9.99e-01 120 chr3R:31086504-31086624 8.41e-04 43_[+3(3.00e-05)]_69 chr2L:11130806-11130926 9.16e-01 120 chr3L:11492584-11492704 1.20e-02 68_[+3(7.55e-05)]_44 chrX:11715406-11715526 4.26e-02 60_[+4(5.00e-05)]_52 chrX:5524621-5524741 3.82e-01 111_[+1(9.70e-05)]_1 chr3R:16254955-16255075 9.98e-03 107_[+5(8.89e-05)]_5 chr3L:1463736-1463856 1.35e-04 4_[+4(5.00e-05)]_85_[+5(1.92e-05)]_\ 15 chr2L:6481372-6481492 5.81e-02 120 chr3L:11285917-11286037 4.46e-03 32_[+1(6.40e-05)]_80 chr2R:15934689-15934809 7.87e-01 120 chrX:9658341-9658461 9.90e-04 1_[+1(4.59e-05)]_5_[+1(1.40e-05)]_\ 98 chr3L:19140564-19140684 8.67e-01 120 chr2R:17476363-17476483 3.10e-01 120 chrX:18239449-18239569 4.91e-01 120 chrX:7737230-7737350 4.52e-02 120 chr2L:4363841-4363961 6.51e-01 120 chr3L:21412244-21412364 6.58e-01 120 chr3R:31580778-31580898 5.94e-01 120 chr2L:19452850-19452970 2.28e-04 89_[+2(1.24e-05)]_23 chr2L:15333734-15333854 7.87e-02 15_[+1(9.70e-05)]_97 chr3R:24582295-24582415 4.90e-01 120 chr3L:2237084-2237204 5.34e-01 120 chrX:18357829-18357949 2.28e-05 49_[+3(4.56e-05)]_6_[+3(1.40e-05)]_\ 6_[+5(3.99e-05)]_4_[+1(1.40e-05)]_23 chr3L:18065025-18065145 3.02e-01 120 chr2L:15333933-15334053 1.56e-01 120 chr2L:10303904-10304024 4.49e-01 120 chr3R:6657854-6657974 2.56e-01 120 chr2L:1654322-1654442 2.15e-02 120 chrX:15076123-15076243 2.73e-01 120 chr2R:6810989-6811109 7.04e-01 120 chr2R:21648149-21648269 2.01e-01 120 chrX:801494-801614 2.89e-02 120 chr3R:9677832-9677952 6.99e-02 120 chrX:7291290-7291410 2.61e-01 120 chrX:9155835-9155955 1.43e-02 13_[+2(1.24e-05)]_99 chrX:16278236-16278356 3.88e-01 120 chr2R:21128503-21128623 5.95e-03 45_[+3(8.92e-05)]_67 chr2L:17473094-17473214 1.50e-02 120 chr3L:6606031-6606151 5.51e-01 120 chr3R:5736888-5737008 5.85e-03 96_[+1(2.96e-05)]_16 chr2R:24780861-24780981 2.17e-01 120 chr3R:15286169-15286289 3.55e-01 120 chr2R:17430952-17431072 2.26e-02 108_[+3(3.00e-05)]_4 chr3R:21580237-21580357 5.75e-01 120 chr2R:10886726-10886846 7.69e-01 120 chr2L:2967000-2967120 4.77e-01 120 chr2R:12665929-12666049 5.94e-01 120 chr3R:20593287-20593407 4.01e-01 120 chr2R:20641529-20641649 4.63e-01 120 chr2R:23551265-23551385 2.33e-02 120 chr3L:3851923-3852043 4.98e-01 120 chr2L:4838748-4838868 2.30e-05 88_[+4(3.53e-05)]_8_[+3(1.40e-05)]_\ 8 chr2L:871482-871602 5.57e-01 120 chr2L:17784768-17784888 6.68e-01 120 chr2L:21221190-21221310 5.20e-01 120 chrX:14832570-14832690 3.57e-04 86_[+2(3.75e-05)]_6_[+2(1.24e-05)]_\ 12 chr3R:4714150-4714270 4.94e-01 120 chr2R:9693190-9693310 2.17e-02 79_[+1(1.40e-05)]_33 chrX:12889218-12889338 5.12e-03 2_[+3(1.40e-05)]_2_[+1(4.59e-05)]_\ 100 chr3R:16996149-16996269 5.75e-01 120 chr2R:7012192-7012312 2.59e-01 120 chr2R:8242643-8242763 3.63e-03 120 chr3R:21073265-21073385 3.84e-01 120 chr2R:9969015-9969135 5.32e-01 120 chr2R:22062538-22062658 1.59e-01 120 chr2L:15060716-15060836 3.61e-03 107_[+1(4.59e-05)]_5 chr2L:18823599-18823719 8.07e-02 79_[+2(2.63e-05)]_33 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************