******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/odd.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:3607010-3607130 1.0000 120 chr2L:3539423-3539543 1.0000 120 chrX:9132689-9132809 1.0000 120 chr2L:3611891-3612011 1.0000 120 chr2R:11796293-11796413 1.0000 120 chr2L:14432678-14432798 1.0000 120 chr3R:26222400-26222520 1.0000 120 chr2R:8985719-8985839 1.0000 120 chr2L:3608926-3609046 1.0000 120 chr3L:19169078-19169198 1.0000 120 chr3R:21163424-21163544 1.0000 120 chr2L:7525392-7525512 1.0000 120 chr2L:7571979-7572099 1.0000 120 chr2L:5113583-5113703 1.0000 120 chr2L:16847022-16847142 1.0000 120 chr2R:19276446-19276566 1.0000 120 chr3L:17971490-17971610 1.0000 120 chr3R:23284422-23284542 1.0000 120 chr3R:17713109-17713229 1.0000 120 chr3R:29585916-29586036 1.0000 120 chr2L:12498674-12498794 1.0000 120 chr3R:20548398-20548518 1.0000 120 chrX:19261903-19262023 1.0000 120 chr3L:12714751-12714871 1.0000 120 chr2R:12119159-12119279 1.0000 120 chr3R:19873294-19873414 1.0000 120 chr3L:14958773-14958893 1.0000 120 chr3R:10567023-10567143 1.0000 120 chrX:6638285-6638405 1.0000 120 chr2R:19138072-19138192 1.0000 120 chr3L:17008794-17008914 1.0000 120 chr2L:10397103-10397223 1.0000 120 chr3R:19997551-19997671 1.0000 120 chr3L:22458878-22458998 1.0000 120 chr3R:24093561-24093681 1.0000 120 chr3R:26030737-26030857 1.0000 120 chr2L:3570636-3570756 1.0000 120 chr2R:11525805-11525925 1.0000 120 chr3L:11384432-11384552 1.0000 120 chr3R:11688321-11688441 1.0000 120 chr3L:6341717-6341837 1.0000 120 chr3L:8932011-8932131 1.0000 120 chr3L:17625137-17625257 1.0000 120 chr2L:5044904-5045024 1.0000 120 chr3R:8712838-8712958 1.0000 120 chr3R:5320791-5320911 1.0000 120 chr3R:25491298-25491418 1.0000 120 chr2L:7528250-7528370 1.0000 120 chr2L:14524387-14524507 1.0000 120 chr3R:15582943-15583063 1.0000 120 chrX:5664337-5664457 1.0000 120 chr3R:5287088-5287208 1.0000 120 chrX:17695008-17695128 1.0000 120 chr3R:26035239-26035359 1.0000 120 chr2R:16271917-16272037 1.0000 120 chr3L:12079105-12079225 1.0000 120 chr2L:3580879-3580999 1.0000 120 chr3R:11666018-11666138 1.0000 120 chr2L:14616075-14616195 1.0000 120 chr3R:29066439-29066559 1.0000 120 chrX:14905775-14905895 1.0000 120 chr2R:7953031-7953151 1.0000 120 chr3L:20954217-20954337 1.0000 120 chr3L:3789081-3789201 1.0000 120 chr2L:20390165-20390285 1.0000 120 chr3R:19326162-19326282 1.0000 120 chr3R:23803826-23803946 1.0000 120 chr2R:18605500-18605620 1.0000 120 chr3L:5947233-5947353 1.0000 120 chr3R:5653984-5654104 1.0000 120 chr3L:4355363-4355483 1.0000 120 chr2R:9060154-9060274 1.0000 120 chr3R:5746774-5746894 1.0000 120 chr2R:23611387-23611507 1.0000 120 chr3R:13441865-13441985 1.0000 120 chr3L:16494925-16495045 1.0000 120 chr4:1199332-1199452 1.0000 120 chrX:20433684-20433804 1.0000 120 chr2R:13470272-13470392 1.0000 120 chr3R:19613060-19613180 1.0000 120 chr2L:19019305-19019425 1.0000 120 chr3L:960734-960854 1.0000 120 chr2L:2864719-2864839 1.0000 120 chr3L:10893619-10893739 1.0000 120 chr2R:22390381-22390501 1.0000 120 chr2L:6789584-6789704 1.0000 120 chr3R:19166096-19166216 1.0000 120 chr3R:16764196-16764316 1.0000 120 chr2R:9610501-9610621 1.0000 120 chr2R:22542624-22542744 1.0000 120 chr3R:19571377-19571497 1.0000 120 chr2L:3773025-3773145 1.0000 120 chr2R:11426862-11426982 1.0000 120 chr2R:16610078-16610198 1.0000 120 chr2R:15735242-15735362 1.0000 120 chr3L:6140303-6140423 1.0000 120 chr3R:21081279-21081399 1.0000 120 chr2L:7526295-7526415 1.0000 120 chr2L:16801699-16801819 1.0000 120 chr2R:18436186-18436306 1.0000 120 chr2R:13563451-13563571 1.0000 120 chr4:167710-167830 1.0000 120 chr2R:23378322-23378442 1.0000 120 chr2L:85202-85322 1.0000 120 chr3L:18020963-18021083 1.0000 120 chr2L:20016545-20016665 1.0000 120 chr3L:1967643-1967763 1.0000 120 chr3R:21561496-21561616 1.0000 120 chr2L:3569987-3570107 1.0000 120 chr3R:11663726-11663846 1.0000 120 chr3L:20949653-20949773 1.0000 120 chr2L:4224538-4224658 1.0000 120 chr3R:21835676-21835796 1.0000 120 chr2R:21871987-21872107 1.0000 120 chr3L:10680030-10680150 1.0000 120 chr2L:8419651-8419771 1.0000 120 chr3R:17655158-17655278 1.0000 120 chr3R:10598301-10598421 1.0000 120 chr2R:21101838-21101958 1.0000 120 chrX:5989499-5989619 1.0000 120 chrX:6994651-6994771 1.0000 120 chr3L:3410026-3410146 1.0000 120 chr3R:10186191-10186311 1.0000 120 chr2L:5233570-5233690 1.0000 120 chr2R:24028417-24028537 1.0000 120 chr3R:20948960-20949080 1.0000 120 chr2R:15891001-15891121 1.0000 120 chr3R:31603928-31604048 1.0000 120 chr3L:4615212-4615332 1.0000 120 chr2L:16819855-16819975 1.0000 120 chr3L:20731017-20731137 1.0000 120 chr3L:6612792-6612912 1.0000 120 chr3R:7892458-7892578 1.0000 120 chr2L:7957331-7957451 1.0000 120 chr3R:21834365-21834485 1.0000 120 chr2R:14486949-14487069 1.0000 120 chr3L:14549388-14549508 1.0000 120 chr2L:14405127-14405247 1.0000 120 chr3L:19132765-19132885 1.0000 120 chr2R:10059109-10059229 1.0000 120 chr3L:19073323-19073443 1.0000 120 chr3L:4000795-4000915 1.0000 120 chr2R:13438122-13438242 1.0000 120 chr3R:25275494-25275614 1.0000 120 chr3L:8018711-8018831 1.0000 120 chr2L:19791753-19791873 1.0000 120 chr3R:17385450-17385570 1.0000 120 chr3R:17828812-17828932 1.0000 120 chr2R:18356428-18356548 1.0000 120 chr2L:2168358-2168478 1.0000 120 chr2L:7628491-7628611 1.0000 120 chr3R:22357074-22357194 1.0000 120 chr2L:2861535-2861655 1.0000 120 chr3L:8698883-8699003 1.0000 120 chr2R:22200031-22200151 1.0000 120 chr2R:20836444-20836564 1.0000 120 chr2L:19323852-19323972 1.0000 120 chr3L:17529886-17530006 1.0000 120 chr3L:9424613-9424733 1.0000 120 chr2L:3121767-3121887 1.0000 120 chr3R:14351592-14351712 1.0000 120 chr4:625947-626067 1.0000 120 chr3L:4108446-4108566 1.0000 120 chr3R:26908900-26909020 1.0000 120 chr3L:8925795-8925915 1.0000 120 chrX:18082847-18082967 1.0000 120 chr2R:14186439-14186559 1.0000 120 chr2L:8276329-8276449 1.0000 120 chr2R:10195002-10195122 1.0000 120 chr3R:7086917-7087037 1.0000 120 chr3R:16215172-16215292 1.0000 120 chr2L:20840581-20840701 1.0000 120 chr2L:11736140-11736260 1.0000 120 chr3L:332229-332349 1.0000 120 chr2L:14443897-14444017 1.0000 120 chr3R:5571188-5571308 1.0000 120 chr2R:7054403-7054523 1.0000 120 chrX:3024669-3024789 1.0000 120 chr3R:18785920-18786040 1.0000 120 chr3R:14479797-14479917 1.0000 120 chr2R:10854267-10854387 1.0000 120 chr3L:3059501-3059621 1.0000 120 chr2L:19796181-19796301 1.0000 120 chr2R:14575984-14576104 1.0000 120 chr2L:5096981-5097101 1.0000 120 chr3L:18833362-18833482 1.0000 120 chr3L:18997201-18997321 1.0000 120 chr2R:12876716-12876836 1.0000 120 chr3L:14328453-14328573 1.0000 120 chr2L:6465643-6465763 1.0000 120 chr3L:6885838-6885958 1.0000 120 chr3L:9042640-9042760 1.0000 120 chr2L:18625511-18625631 1.0000 120 chr2L:1656998-1657118 1.0000 120 chr2R:16097028-16097148 1.0000 120 chr2R:22162300-22162420 1.0000 120 chrX:19166484-19166604 1.0000 120 chr2R:18397642-18397762 1.0000 120 chr3R:14817883-14818003 1.0000 120 chr2R:12009012-12009132 1.0000 120 chr3R:11372693-11372813 1.0000 120 chr2R:7879134-7879254 1.0000 120 chr2R:16848422-16848542 1.0000 120 chr3R:18121987-18122107 1.0000 120 chr2R:24746029-24746149 1.0000 120 chr3R:24218675-24218795 1.0000 120 chr2R:19449760-19449880 1.0000 120 chr2R:21048238-21048358 1.0000 120 chr2R:22387343-22387463 1.0000 120 chr3R:16011783-16011903 1.0000 120 chr3R:23947134-23947254 1.0000 120 chr2R:8327296-8327416 1.0000 120 chr3R:23445369-23445489 1.0000 120 chrX:15297009-15297129 1.0000 120 chr2R:15134211-15134331 1.0000 120 chr3R:29891310-29891430 1.0000 120 chr2R:23043020-23043140 1.0000 120 chr2R:7745266-7745386 1.0000 120 chr3L:8741351-8741471 1.0000 120 chr3L:17740567-17740687 1.0000 120 chr3L:3817169-3817289 1.0000 120 chr2L:7957124-7957244 1.0000 120 chr2L:488264-488384 1.0000 120 chr3L:685554-685674 1.0000 120 chr3L:14804754-14804874 1.0000 120 chr3R:21263341-21263461 1.0000 120 chr3L:4254661-4254781 1.0000 120 chr3L:1578453-1578573 1.0000 120 chr3R:29480059-29480179 1.0000 120 chr3R:18311122-18311242 1.0000 120 chr3R:14095655-14095775 1.0000 120 chr3L:14172633-14172753 1.0000 120 chr3R:22464635-22464755 1.0000 120 chr2L:1094775-1094895 1.0000 120 chr2L:16526481-16526601 1.0000 120 chr3R:14300092-14300212 1.0000 120 chr3L:11540405-11540525 1.0000 120 chr4:446093-446213 1.0000 120 chr3L:9360372-9360492 1.0000 120 chr2R:18171964-18172084 1.0000 120 chr3R:27946747-27946867 1.0000 120 chr3L:3038274-3038394 1.0000 120 chr2R:22312716-22312836 1.0000 120 chr2L:6283414-6283534 1.0000 120 chr2L:6461660-6461780 1.0000 120 chr3L:6218742-6218862 1.0000 120 chrX:17582785-17582905 1.0000 120 chr2R:17394510-17394630 1.0000 120 chr3L:9762121-9762241 1.0000 120 chr3L:20471136-20471256 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_odd/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/odd.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.212 G 0.206 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.212 G 0.206 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGCAGCDS MEME-1 width = 8 sites = 33 llr = 291 E-value = 7.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::8::2: pos.-specific C ::a::a24 probability G 5a:2a:46 matrix T ::::::2: bits 2.3 ** ** 2.1 ** ** 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** * Entropy 1.1 ****** * (12.7 bits) 0.9 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel GGCAGCGG consensus A AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10567023-10567143 75 4.87e-06 AAATAGATAA GGCAGCGG TGGCGCGCAA chr3L:3038274-3038394 23 1.18e-05 caccagcagc agcagcgg tggtcgcagc chr2L:5233570-5233690 5 1.18e-05 ACAC AGCAGCGG CCTGTCGGTA chr2R:15735242-15735362 52 1.18e-05 cagcagctgc agcagcgg cagcaGGGGC chrX:5664337-5664457 1 1.18e-05 . AGCAGCGG CCTGGAGCAA chrX:9132689-9132809 66 1.18e-05 CAACAGAAGC AGCAGCGG CAATAGCTGC chr3R:21561496-21561616 18 1.68e-05 AAGGCATTTA GGCAGCGC ACATCTCTGA chr2L:14616075-14616195 53 1.68e-05 CCATAAACTA GGCAGCGC TGCCGTCGCC chr3R:11372693-11372813 52 2.37e-05 TCGCAGTGGC GGCAGCAG TCGCAGTCAT chr2R:22312716-22312836 28 4.26e-05 CCATGTATGC GGCAGCTG AGTGGCAAAA chr2R:21048238-21048358 109 4.26e-05 GGAGTGCGTT GGCAGCTG CAGC chr2R:10059109-10059229 18 4.26e-05 CCGATTTCCA AGCAGCGC GTGCTTCGTT chr2L:8419651-8419771 50 4.26e-05 TATCTTTATC GGCAGCTG ACGGTCAGTA chr3L:12714751-12714871 75 4.26e-05 AGTCTCCTCG AGCAGCGC ACAGCATGAG chrX:19261903-19262023 26 4.26e-05 TGAGCAACTC GGCAGCCG CAAGCACTGT chr3L:19169078-19169198 41 4.26e-05 TCGCTGCCGC GGCAGCCG AAACTTTGAC chr2R:22162300-22162420 53 5.59e-05 CAAAAGTCAC AGCAGCAG AGCAAATATT chr2L:1656998-1657118 69 5.59e-05 GAAATAAAAC AGCAGCAG CGATAGAAAA chr3R:7892458-7892578 28 5.59e-05 CAAGATGGCC GGCGGCGG TCTGTCGTAA chr3R:21835676-21835796 69 5.59e-05 GAGCAAACAC GGCGGCGG CAAACACTTT chr3R:22357074-22357194 43 7.98e-05 cacacagaca ggcagcac acgcacacac chr2L:7957331-7957451 57 7.98e-05 CAGTGTCAGT GGCAGCAC ACGAatcatc chr3L:20949653-20949773 17 7.98e-05 CTCCAATGGG AGCAGCTG GCGCTCTCTC chr4:167710-167830 22 7.98e-05 TATTTACATG AGCAGCCG GTCCAACAGT chr2R:9060154-9060274 92 7.98e-05 ACAGTAGTCT GGCAGCAC CGCCTCTTCA chr3R:21263341-21263461 21 9.69e-05 CCTACTTGCC GGCAGCTC AAATAAAAAG chr3L:14549388-14549508 35 9.69e-05 AATCAATATG GGCAGCCC TCGAGAGATC chr2L:5096981-5097101 50 1.33e-04 ACTCTCTTCA AGCAGCTC TTCCGTTTCC chr2L:2864719-2864839 82 1.33e-04 AGAGCCAGCG AGCAGCCC GTCCAGACAC chr2L:3611891-3612011 106 1.33e-04 GATGGGGCGA GGCGGCAG AAAGAGA chr3R:8712838-8712958 78 1.46e-04 GATCCCCTTT AGCGGCGC CCCTGCTGAT chr3R:24218675-24218795 86 1.53e-04 TAGCCAAGCG AGCGGCAG ACTGAAGTCA chr2R:18356428-18356548 52 1.70e-04 GCACATACAC AGCGGCTG GCAGTGCgag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10567023-10567143 4.9e-06 74_[+1]_38 chr3L:3038274-3038394 1.2e-05 22_[+1]_90 chr2L:5233570-5233690 1.2e-05 4_[+1]_108 chr2R:15735242-15735362 1.2e-05 51_[+1]_61 chrX:5664337-5664457 1.2e-05 [+1]_112 chrX:9132689-9132809 1.2e-05 65_[+1]_47 chr3R:21561496-21561616 1.7e-05 17_[+1]_95 chr2L:14616075-14616195 1.7e-05 52_[+1]_60 chr3R:11372693-11372813 2.4e-05 51_[+1]_61 chr2R:22312716-22312836 4.3e-05 27_[+1]_85 chr2R:21048238-21048358 4.3e-05 108_[+1]_4 chr2R:10059109-10059229 4.3e-05 17_[+1]_95 chr2L:8419651-8419771 4.3e-05 49_[+1]_63 chr3L:12714751-12714871 4.3e-05 74_[+1]_38 chrX:19261903-19262023 4.3e-05 25_[+1]_87 chr3L:19169078-19169198 4.3e-05 40_[+1]_72 chr2R:22162300-22162420 5.6e-05 52_[+1]_60 chr2L:1656998-1657118 5.6e-05 68_[+1]_44 chr3R:7892458-7892578 5.6e-05 27_[+1]_85 chr3R:21835676-21835796 5.6e-05 68_[+1]_44 chr3R:22357074-22357194 8e-05 42_[+1]_70 chr2L:7957331-7957451 8e-05 56_[+1]_56 chr3L:20949653-20949773 8e-05 16_[+1]_96 chr4:167710-167830 8e-05 21_[+1]_91 chr2R:9060154-9060274 8e-05 91_[+1]_21 chr3R:21263341-21263461 9.7e-05 20_[+1]_92 chr3L:14549388-14549508 9.7e-05 34_[+1]_78 chr2L:5096981-5097101 0.00013 49_[+1]_63 chr2L:2864719-2864839 0.00013 81_[+1]_31 chr2L:3611891-3612011 0.00013 105_[+1]_7 chr3R:8712838-8712958 0.00015 77_[+1]_35 chr3R:24218675-24218795 0.00015 85_[+1]_27 chr2R:18356428-18356548 0.00017 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGCAGCDS width=8 seqs=33 chr3R:10567023-10567143 ( 75) GGCAGCGG 1 chr3L:3038274-3038394 ( 23) AGCAGCGG 1 chr2L:5233570-5233690 ( 5) AGCAGCGG 1 chr2R:15735242-15735362 ( 52) AGCAGCGG 1 chrX:5664337-5664457 ( 1) AGCAGCGG 1 chrX:9132689-9132809 ( 66) AGCAGCGG 1 chr3R:21561496-21561616 ( 18) GGCAGCGC 1 chr2L:14616075-14616195 ( 53) GGCAGCGC 1 chr3R:11372693-11372813 ( 52) GGCAGCAG 1 chr2R:22312716-22312836 ( 28) GGCAGCTG 1 chr2R:21048238-21048358 ( 109) GGCAGCTG 1 chr2R:10059109-10059229 ( 18) AGCAGCGC 1 chr2L:8419651-8419771 ( 50) GGCAGCTG 1 chr3L:12714751-12714871 ( 75) AGCAGCGC 1 chrX:19261903-19262023 ( 26) GGCAGCCG 1 chr3L:19169078-19169198 ( 41) GGCAGCCG 1 chr2R:22162300-22162420 ( 53) AGCAGCAG 1 chr2L:1656998-1657118 ( 69) AGCAGCAG 1 chr3R:7892458-7892578 ( 28) GGCGGCGG 1 chr3R:21835676-21835796 ( 69) GGCGGCGG 1 chr3R:22357074-22357194 ( 43) GGCAGCAC 1 chr2L:7957331-7957451 ( 57) GGCAGCAC 1 chr3L:20949653-20949773 ( 17) AGCAGCTG 1 chr4:167710-167830 ( 22) AGCAGCCG 1 chr2R:9060154-9060274 ( 92) GGCAGCAC 1 chr3R:21263341-21263461 ( 21) GGCAGCTC 1 chr3L:14549388-14549508 ( 35) GGCAGCCC 1 chr2L:5096981-5097101 ( 50) AGCAGCTC 1 chr2L:2864719-2864839 ( 82) AGCAGCCC 1 chr2L:3611891-3612011 ( 106) GGCGGCAG 1 chr3R:8712838-8712958 ( 78) AGCGGCGC 1 chr3R:24218675-24218795 ( 86) AGCGGCAG 1 chr2R:18356428-18356548 ( 52) AGCGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 7.7e-002 73 -1169 132 -1169 -1169 -1169 228 -1169 -1169 224 -1169 -1169 149 -1169 -18 -1169 -1169 -1169 228 -1169 -1169 224 -1169 -1169 -27 -48 93 -45 -1169 78 163 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 7.7e-002 0.484848 0.000000 0.515152 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.242424 0.151515 0.393939 0.212121 0.000000 0.363636 0.636364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGCAGCDS MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GCAGC[GAT][GC] -------------------------------------------------------------------------------- Time 7.76 secs. ******************************************************************************** ******************************************************************************** MOTIF NTRTTTRC MEME-2 width = 8 sites = 103 llr = 711 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:4:::4: pos.-specific C 2::::::7 probability G 3:6:3:6: matrix T 3a:a7a:3 bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.1 ******* (10.0 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel GTGTTTGC consensus T A G AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29891310-29891430 65 1.31e-05 TGTAATTTCT GTGTTTGC CAAAGATACA chr2R:8327296-8327416 77 1.31e-05 TTGTTTGCTC GTGTttgc cgatgttgtt chr2L:2861535-2861655 69 1.31e-05 TCAACATTAT GTGTTTGC ACTCTCGGTA chr3L:6140303-6140423 56 1.31e-05 GTCAATGCGC GTGTTTGC CTACAAGTAG chr2R:18605500-18605620 38 1.31e-05 CCAAACAGCT GTGTTTGC CCATGTTTGG chr2L:18625511-18625631 46 3.16e-05 TGTTTTATCG TTGTTTGC TTTATCAACT chr3L:8018711-8018831 45 3.16e-05 AGACAATTGT TTGTTTGC CCTAGATTCT chr3R:19166096-19166216 103 3.16e-05 CGGCAAACAA TTGTTTGC TTGTCGCCCC chr3L:960734-960854 55 3.16e-05 CGAGTGGTTT TTGTTTGC GGAAGGCAAA chr2L:16526481-16526601 58 5.95e-05 CTAGAAATTC ATGTTTGC TTTTAAAATA chr3L:685554-685674 102 5.95e-05 GTGCGAGAGT GTGTGTGC GTGTGACCAG chr2R:23043020-23043140 35 5.95e-05 GTGTGCTAGT GTGTGTGC ACCACTTTGT chr3L:19073323-19073443 11 5.95e-05 CGCATACGCA GTGTGTGC GGCGGTGGGT chr3R:20948960-20949080 61 5.95e-05 CGCtgtgtgg gtgtgtgc gtgtatctgt chr3R:23803826-23803946 84 5.95e-05 GTGAGCGAGT GTGTGTGC CTAGCATGGC chr2L:14616075-14616195 18 5.95e-05 AAAACAAACC GTGTGTGC CGAAAAATAA chr2R:11525805-11525925 88 5.95e-05 TCTGCGTGGC GTGTGTGC GTGAGCGGTG chr2L:1094775-1094895 100 7.29e-05 ACTGTTTGCA CTGTTTGC CCCCCCTCCT chr3R:23445369-23445489 11 7.29e-05 GTCCACGCGA CTGTTTGC CGTACGCATT chr3R:23947134-23947254 61 7.29e-05 CGCACATCAT CTGTTTGC GTTGGTAAAT chr2R:19449760-19449880 54 7.29e-05 TTGGCGTTGT CTGTTTGC TGAGAGGTTA chr2L:14443897-14444017 79 7.29e-05 CTGCTGCCTG CTGTTTGC TGAGAATGGG chr3L:6612792-6612912 31 7.29e-05 GCCCACTGTT CTGTTTGC ATTGCTTATC chrX:6994651-6994771 95 7.29e-05 TATTGCTCGG CTGTTTGC CTTTTTGGCG chr2R:23611387-23611507 44 7.29e-05 GCCTCACCCG CTGTTTGC TGATAGCTGT chr2R:22542624-22542744 25 1.23e-04 ATTTCTGTTT GTATTTGC TTTTCACGCT chr2L:6789584-6789704 40 1.23e-04 GCAAACATCA GTGTTTAC GTAAATCCTA chr3R:29066439-29066559 59 1.23e-04 CGTTTTGGCA GTGTTTAC ATTGGAAACG chr2L:14432678-14432798 78 1.23e-04 CACTGTGTGT GTATTTGC GTCAATGTTG chr2R:22312716-22312836 9 1.36e-04 GAGTACTC ATGTGTGC GCCATGTATG chr2L:10397103-10397223 88 1.36e-04 ACACTCGCAT ATGTGTGC GTATATAGTG chr2R:22162300-22162420 91 1.64e-04 ACACATCATA CTGTGTGC TGAGCGTGTT chr3R:17828812-17828932 43 1.64e-04 TGGAATGTTT GTGTTTGT ATTTGTGGGG chr2L:7526295-7526415 33 1.64e-04 CTCCTCTTGT GTGTTTGT TTACCATTCA chr3L:9762121-9762241 93 2.16e-04 AGTTTTCTCA TTGTTTAC CTATTTCCGC chrX:17582785-17582905 67 2.16e-04 ATGCCAACCA TTATTTGC TTAGTGGTAA chr3L:9360372-9360492 50 2.16e-04 CTCTTATACA TTGTTTAC GCCAAATGCA chr3L:4254661-4254781 55 2.16e-04 TATCGTTAAT TTGTTTAC TAGTGATAGA chr2L:488264-488384 86 2.16e-04 AAGAACAAAT TTATTTGC AAAACGTGAG chr2R:16097028-16097148 101 2.16e-04 AAAGCAGAAA TTGTTTAC TCACATTAAA chr3L:8698883-8699003 19 2.16e-04 AATACTCCAG TTGTTTAC TTAGACGCCA chr2R:10059109-10059229 57 2.16e-04 AGAATTCGAA TTGTTTAC AGACATTCTA chr3L:16494925-16495045 65 2.16e-04 AATGTTTCCT TTATTTGC GTTTTGTGAA chr3R:11666018-11666138 75 2.16e-04 TTACTGATAA TTGTTTAC CTTTGTCGCT chr3L:6218742-6218862 22 2.95e-04 CTCTGAACGT ATGTTTAC AAAATCTTTT chr3R:14300092-14300212 85 2.95e-04 CACTGGACTA ATATTTGC CTAAAGCCAG chr2R:22387343-22387463 21 2.95e-04 AGTTGAATAA ATATTTGC CATACACGAA chr3L:18997201-18997321 95 2.95e-04 TATTTCGTTA ATGTTTAC GAAAGCTTAT chr2R:10854267-10854387 23 2.95e-04 CCATACATAT ATGTTTAC TACTTCCGCG chr2L:3121767-3121887 54 2.95e-04 CCCAAAACCA ATATTTGC ATTTCAGTGG chr2L:2168358-2168478 22 2.95e-04 GTATTATGAA ATGTTTAC GATTTGCTTG chr3R:10598301-10598421 98 2.95e-04 GACAATGTCA ATATTTGC ATTGGCCAAG chr3R:13441865-13441985 92 2.95e-04 AGTTCTTTAA ATATTTGC CGGGTGGCAT chr3L:3817169-3817289 23 3.59e-04 CTACATATAT CTGTTTAC TATTCCGTTT chr3L:8925795-8925915 82 3.59e-04 CGTTATTATG TTGTTTGT TCGTTGTTTA chr2L:16819855-16819975 87 3.59e-04 AATGCCTCCA CTGTTTAC AACCTCCTGG chr3L:4615212-4615332 20 3.59e-04 AAAtgtttgt ttgtttgt ctgtctggct chr2L:16801699-16801819 102 3.59e-04 CAAATTACAG TTGTTTGT TGTCTAGTGT chr3R:5287088-5287208 35 3.59e-04 AACCCGAAAG CTATTTGC CCAAGTGCAG chr3R:18121987-18122107 10 3.97e-04 CTCATAGCA GTGTGTGT GAGCGCACAG chr3L:4108446-4108566 19 3.97e-04 GCGAATGCGT GTGTGTGT GAAATTGTGC chr2R:18356428-18356548 14 3.97e-04 TTTTACCGCA ATGTTTGT GCGAAACATA chr3R:26908900-26909020 58 4.15e-04 AAGTCAAACA CTGTTTGT TGACGTTACC chr2R:24028417-24028537 24 4.15e-04 GCACAAACCA CTGTTTGT TTCTATAGAC chr2L:5233570-5233690 54 4.79e-04 CTGGGAATTA GTATTTAC TGCCCCCCAA chr3R:19571377-19571497 17 4.79e-04 ATTAAAATTA TTGTGTAC GACGACCAAT chr4:1199332-1199452 100 4.79e-04 AACATACAAC TTGTGTAC GTTATATGGA chrX:6638285-6638405 95 4.79e-04 CATATGTTCC GTATTTAC ACACACACAC chr3R:20548398-20548518 34 5.16e-04 AGCTCATAAA ATATGTGC TCAAGTCTAT chr2L:6283414-6283534 13 6.12e-04 GTTTAAATAG GTATTTGT AAAGTAACCA chr2R:18171964-18172084 51 6.12e-04 TTGCCGTTTT GTATTTGT TTATATAATA chrX:19166484-19166604 95 6.12e-04 TTCAAAATCG CTATGTGC GAAAAAATAT chrX:3024669-3024789 94 6.12e-04 tttgtgcctt gtatttGT ATGGCTTGCA chr3L:3410026-3410146 87 6.12e-04 TGGTGTTCCA TTGTGTGT TGCACCTTTT chr2L:8419651-8419771 73 6.12e-04 CAGTAAGTGT GTATTTGT GAGTATGCCC chr2L:3570636-3570756 5 6.12e-04 GGAT TTGTGTGT TTTGTTGTGC chr3L:11540405-11540525 16 6.30e-04 ATGCATACTC ATGTGTGT CAATATTTGG chr2L:7628491-7628611 14 6.30e-04 CAGGCCAAAC ATGTGTGT CTGCGGGTCT chr4:167710-167830 11 6.80e-04 CAATAACAAA TTATTTAC ATGAGCAGCC chr3L:20471136-20471256 82 7.37e-04 tattataatt GTATGTAC AAACTGAAGT chr3R:27946747-27946867 20 7.37e-04 ACATATGTAC ATATTTAC ATATAACCAT chrX:18082847-18082967 57 7.37e-04 ATATACATAT GTATGTAC ATAGCTATAT chr3R:25275494-25275614 40 7.37e-04 AAAGAAACTA ATATTTAC CTACAACAAA chr3R:23284422-23284542 90 7.37e-04 TGCTGGCCAA ATATTTAC CAGGCCATAA chr3R:26222400-26222520 55 7.37e-04 AGTCGGGCAA ATATTTAC TTAAAGTTCA chr3R:29480059-29480179 65 8.35e-04 CATTTGGGTA CTATTTAC TTTTCCGTCG chr2R:18397642-18397762 17 8.35e-04 GTTTGCCTGA TTGTTTAT TAATGTCCGG chr3L:18833362-18833482 98 8.35e-04 TGTTGTTATT TTGTTTAT ACACATATTG chr3R:5320791-5320911 39 8.35e-04 AGACTTATAT TTATTTGT GTAATTATGA chr3L:17625137-17625257 72 8.35e-04 GTCTAGCTTT TTGTTTAT GTACAAATTC chr4:446093-446213 97 9.43e-04 AATTCCTAGC GTGTGTAT TCCTTTAAAA chrX:15297009-15297129 84 9.43e-04 TAAATACAAC ATATTTGT TATGTCATTT chr2L:2864719-2864839 109 9.43e-04 CCAGAATTCA ATGTTTAT TTAA chr3L:20954217-20954337 108 9.43e-04 TTGATCCAGT ATATTTGT ACAGA chr3R:21163424-21163544 44 9.43e-04 ATAACTACGA GTATGTGT TATGAAGTGG chr3R:18785920-18786040 76 9.96e-04 TTTACTTTCT CTATTTGT GGATAAGTAA chr3L:10680030-10680150 95 1.02e-03 CTTTTGGTTT TTATGTAC ATAGTCGTTT chr3R:19873294-19873414 81 1.02e-03 TGAAATAGTG TTATGTAC ATATGTACAT chr3R:10186191-10186311 52 1.05e-03 GGCAATGACA ATATGTAC AAGTACACGC chr2L:4224538-4224658 16 1.05e-03 TGGCCAGTAT ATATGTAC ATATTTTCAA chr3R:26035239-26035359 84 1.21e-03 GGAGAGGGCG ATATGTGT AGGGCCCACG chr3L:8932011-8932131 71 1.21e-03 TTAATGGTTT ATGTGTAT GGAAAATATG chr2L:3580879-3580999 72 1.24e-03 CTCGTTTTGT CTGTGTAT TCTGAGCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29891310-29891430 1.3e-05 64_[+2]_48 chr2R:8327296-8327416 1.3e-05 76_[+2]_36 chr2L:2861535-2861655 1.3e-05 68_[+2]_44 chr3L:6140303-6140423 1.3e-05 55_[+2]_57 chr2R:18605500-18605620 1.3e-05 37_[+2]_75 chr2L:18625511-18625631 3.2e-05 45_[+2]_67 chr3L:8018711-8018831 3.2e-05 44_[+2]_68 chr3R:19166096-19166216 3.2e-05 102_[+2]_10 chr3L:960734-960854 3.2e-05 54_[+2]_58 chr2L:16526481-16526601 5.9e-05 57_[+2]_55 chr3L:685554-685674 5.9e-05 101_[+2]_11 chr2R:23043020-23043140 5.9e-05 34_[+2]_78 chr3L:19073323-19073443 5.9e-05 10_[+2]_102 chr3R:20948960-20949080 5.9e-05 60_[+2]_52 chr3R:23803826-23803946 5.9e-05 83_[+2]_29 chr2L:14616075-14616195 5.9e-05 17_[+2]_95 chr2R:11525805-11525925 5.9e-05 87_[+2]_25 chr2L:1094775-1094895 7.3e-05 99_[+2]_13 chr3R:23445369-23445489 7.3e-05 10_[+2]_102 chr3R:23947134-23947254 7.3e-05 60_[+2]_52 chr2R:19449760-19449880 7.3e-05 53_[+2]_59 chr2L:14443897-14444017 7.3e-05 78_[+2]_34 chr3L:6612792-6612912 7.3e-05 30_[+2]_82 chrX:6994651-6994771 7.3e-05 94_[+2]_18 chr2R:23611387-23611507 7.3e-05 43_[+2]_69 chr2R:22542624-22542744 0.00012 24_[+2]_88 chr2L:6789584-6789704 0.00012 39_[+2]_73 chr3R:29066439-29066559 0.00012 58_[+2]_54 chr2L:14432678-14432798 0.00012 77_[+2]_35 chr2R:22312716-22312836 0.00014 8_[+2]_104 chr2L:10397103-10397223 0.00014 87_[+2]_25 chr2R:22162300-22162420 0.00016 90_[+2]_22 chr3R:17828812-17828932 0.00016 42_[+2]_70 chr2L:7526295-7526415 0.00016 32_[+2]_80 chr3L:9762121-9762241 0.00022 92_[+2]_20 chrX:17582785-17582905 0.00022 66_[+2]_46 chr3L:9360372-9360492 0.00022 49_[+2]_63 chr3L:4254661-4254781 0.00022 54_[+2]_58 chr2L:488264-488384 0.00022 85_[+2]_27 chr2R:16097028-16097148 0.00022 100_[+2]_12 chr3L:8698883-8699003 0.00022 18_[+2]_94 chr2R:10059109-10059229 0.00022 56_[+2]_56 chr3L:16494925-16495045 0.00022 64_[+2]_48 chr3R:11666018-11666138 0.00022 74_[+2]_38 chr3L:6218742-6218862 0.0003 21_[+2]_91 chr3R:14300092-14300212 0.0003 84_[+2]_28 chr2R:22387343-22387463 0.0003 20_[+2]_92 chr3L:18997201-18997321 0.0003 94_[+2]_18 chr2R:10854267-10854387 0.0003 22_[+2]_90 chr2L:3121767-3121887 0.0003 53_[+2]_59 chr2L:2168358-2168478 0.0003 21_[+2]_91 chr3R:10598301-10598421 0.0003 97_[+2]_15 chr3R:13441865-13441985 0.0003 91_[+2]_21 chr3L:3817169-3817289 0.00036 22_[+2]_90 chr3L:8925795-8925915 0.00036 81_[+2]_31 chr2L:16819855-16819975 0.00036 86_[+2]_26 chr3L:4615212-4615332 0.00036 19_[+2]_93 chr2L:16801699-16801819 0.00036 101_[+2]_11 chr3R:5287088-5287208 0.00036 34_[+2]_78 chr3R:18121987-18122107 0.0004 9_[+2]_103 chr3L:4108446-4108566 0.0004 18_[+2]_94 chr2R:18356428-18356548 0.0004 13_[+2]_99 chr3R:26908900-26909020 0.00042 57_[+2]_55 chr2R:24028417-24028537 0.00042 23_[+2]_89 chr2L:5233570-5233690 0.00048 53_[+2]_59 chr3R:19571377-19571497 0.00048 16_[+2]_96 chr4:1199332-1199452 0.00048 99_[+2]_13 chrX:6638285-6638405 0.00048 94_[+2]_18 chr3R:20548398-20548518 0.00052 33_[+2]_79 chr2L:6283414-6283534 0.00061 12_[+2]_100 chr2R:18171964-18172084 0.00061 50_[+2]_62 chrX:19166484-19166604 0.00061 94_[+2]_18 chrX:3024669-3024789 0.00061 93_[+2]_19 chr3L:3410026-3410146 0.00061 86_[+2]_26 chr2L:8419651-8419771 0.00061 72_[+2]_40 chr2L:3570636-3570756 0.00061 4_[+2]_108 chr3L:11540405-11540525 0.00063 15_[+2]_97 chr2L:7628491-7628611 0.00063 13_[+2]_99 chr4:167710-167830 0.00068 10_[+2]_102 chr3L:20471136-20471256 0.00074 81_[+2]_31 chr3R:27946747-27946867 0.00074 19_[+2]_93 chrX:18082847-18082967 0.00074 56_[+2]_56 chr3R:25275494-25275614 0.00074 39_[+2]_73 chr3R:23284422-23284542 0.00074 89_[+2]_23 chr3R:26222400-26222520 0.00074 54_[+2]_58 chr3R:29480059-29480179 0.00084 64_[+2]_48 chr2R:18397642-18397762 0.00084 16_[+2]_96 chr3L:18833362-18833482 0.00084 97_[+2]_15 chr3R:5320791-5320911 0.00084 38_[+2]_74 chr3L:17625137-17625257 0.00084 71_[+2]_41 chr4:446093-446213 0.00094 96_[+2]_16 chrX:15297009-15297129 0.00094 83_[+2]_29 chr2L:2864719-2864839 0.00094 108_[+2]_4 chr3L:20954217-20954337 0.00094 107_[+2]_5 chr3R:21163424-21163544 0.00094 43_[+2]_69 chr3R:18785920-18786040 0.001 75_[+2]_37 chr3L:10680030-10680150 0.001 94_[+2]_18 chr3R:19873294-19873414 0.001 80_[+2]_32 chr3R:10186191-10186311 0.001 51_[+2]_61 chr2L:4224538-4224658 0.001 15_[+2]_97 chr3R:26035239-26035359 0.0012 83_[+2]_29 chr3L:8932011-8932131 0.0012 70_[+2]_42 chr2L:3580879-3580999 0.0012 71_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NTRTTTRC width=8 seqs=103 chr3R:29891310-29891430 ( 65) GTGTTTGC 1 chr2R:8327296-8327416 ( 77) GTGTTTGC 1 chr2L:2861535-2861655 ( 69) GTGTTTGC 1 chr3L:6140303-6140423 ( 56) GTGTTTGC 1 chr2R:18605500-18605620 ( 38) GTGTTTGC 1 chr2L:18625511-18625631 ( 46) TTGTTTGC 1 chr3L:8018711-8018831 ( 45) TTGTTTGC 1 chr3R:19166096-19166216 ( 103) TTGTTTGC 1 chr3L:960734-960854 ( 55) TTGTTTGC 1 chr2L:16526481-16526601 ( 58) ATGTTTGC 1 chr3L:685554-685674 ( 102) GTGTGTGC 1 chr2R:23043020-23043140 ( 35) GTGTGTGC 1 chr3L:19073323-19073443 ( 11) GTGTGTGC 1 chr3R:20948960-20949080 ( 61) GTGTGTGC 1 chr3R:23803826-23803946 ( 84) GTGTGTGC 1 chr2L:14616075-14616195 ( 18) GTGTGTGC 1 chr2R:11525805-11525925 ( 88) GTGTGTGC 1 chr2L:1094775-1094895 ( 100) CTGTTTGC 1 chr3R:23445369-23445489 ( 11) CTGTTTGC 1 chr3R:23947134-23947254 ( 61) CTGTTTGC 1 chr2R:19449760-19449880 ( 54) CTGTTTGC 1 chr2L:14443897-14444017 ( 79) CTGTTTGC 1 chr3L:6612792-6612912 ( 31) CTGTTTGC 1 chrX:6994651-6994771 ( 95) CTGTTTGC 1 chr2R:23611387-23611507 ( 44) CTGTTTGC 1 chr2R:22542624-22542744 ( 25) GTATTTGC 1 chr2L:6789584-6789704 ( 40) GTGTTTAC 1 chr3R:29066439-29066559 ( 59) GTGTTTAC 1 chr2L:14432678-14432798 ( 78) GTATTTGC 1 chr2R:22312716-22312836 ( 9) ATGTGTGC 1 chr2L:10397103-10397223 ( 88) ATGTGTGC 1 chr2R:22162300-22162420 ( 91) CTGTGTGC 1 chr3R:17828812-17828932 ( 43) GTGTTTGT 1 chr2L:7526295-7526415 ( 33) GTGTTTGT 1 chr3L:9762121-9762241 ( 93) TTGTTTAC 1 chrX:17582785-17582905 ( 67) TTATTTGC 1 chr3L:9360372-9360492 ( 50) TTGTTTAC 1 chr3L:4254661-4254781 ( 55) TTGTTTAC 1 chr2L:488264-488384 ( 86) TTATTTGC 1 chr2R:16097028-16097148 ( 101) TTGTTTAC 1 chr3L:8698883-8699003 ( 19) TTGTTTAC 1 chr2R:10059109-10059229 ( 57) TTGTTTAC 1 chr3L:16494925-16495045 ( 65) TTATTTGC 1 chr3R:11666018-11666138 ( 75) TTGTTTAC 1 chr3L:6218742-6218862 ( 22) ATGTTTAC 1 chr3R:14300092-14300212 ( 85) ATATTTGC 1 chr2R:22387343-22387463 ( 21) ATATTTGC 1 chr3L:18997201-18997321 ( 95) ATGTTTAC 1 chr2R:10854267-10854387 ( 23) ATGTTTAC 1 chr2L:3121767-3121887 ( 54) ATATTTGC 1 chr2L:2168358-2168478 ( 22) ATGTTTAC 1 chr3R:10598301-10598421 ( 98) ATATTTGC 1 chr3R:13441865-13441985 ( 92) ATATTTGC 1 chr3L:3817169-3817289 ( 23) CTGTTTAC 1 chr3L:8925795-8925915 ( 82) TTGTTTGT 1 chr2L:16819855-16819975 ( 87) CTGTTTAC 1 chr3L:4615212-4615332 ( 20) TTGTTTGT 1 chr2L:16801699-16801819 ( 102) TTGTTTGT 1 chr3R:5287088-5287208 ( 35) CTATTTGC 1 chr3R:18121987-18122107 ( 10) GTGTGTGT 1 chr3L:4108446-4108566 ( 19) GTGTGTGT 1 chr2R:18356428-18356548 ( 14) ATGTTTGT 1 chr3R:26908900-26909020 ( 58) CTGTTTGT 1 chr2R:24028417-24028537 ( 24) CTGTTTGT 1 chr2L:5233570-5233690 ( 54) GTATTTAC 1 chr3R:19571377-19571497 ( 17) TTGTGTAC 1 chr4:1199332-1199452 ( 100) TTGTGTAC 1 chrX:6638285-6638405 ( 95) GTATTTAC 1 chr3R:20548398-20548518 ( 34) ATATGTGC 1 chr2L:6283414-6283534 ( 13) GTATTTGT 1 chr2R:18171964-18172084 ( 51) GTATTTGT 1 chrX:19166484-19166604 ( 95) CTATGTGC 1 chrX:3024669-3024789 ( 94) GTATTTGT 1 chr3L:3410026-3410146 ( 87) TTGTGTGT 1 chr2L:8419651-8419771 ( 73) GTATTTGT 1 chr2L:3570636-3570756 ( 5) TTGTGTGT 1 chr3L:11540405-11540525 ( 16) ATGTGTGT 1 chr2L:7628491-7628611 ( 14) ATGTGTGT 1 chr4:167710-167830 ( 11) TTATTTAC 1 chr3L:20471136-20471256 ( 82) GTATGTAC 1 chr3R:27946747-27946867 ( 20) ATATTTAC 1 chrX:18082847-18082967 ( 57) GTATGTAC 1 chr3R:25275494-25275614 ( 40) ATATTTAC 1 chr3R:23284422-23284542 ( 90) ATATTTAC 1 chr3R:26222400-26222520 ( 55) ATATTTAC 1 chr3R:29480059-29480179 ( 65) CTATTTAC 1 chr2R:18397642-18397762 ( 17) TTGTTTAT 1 chr3L:18833362-18833482 ( 98) TTGTTTAT 1 chr3R:5320791-5320911 ( 39) TTATTTGT 1 chr3L:17625137-17625257 ( 72) TTGTTTAT 1 chr4:446093-446213 ( 97) GTGTGTAT 1 chrX:15297009-15297129 ( 84) ATATTTGT 1 chr2L:2864719-2864839 ( 109) ATGTTTAT 1 chr3L:20954217-20954337 ( 108) ATATTTGT 1 chr3R:21163424-21163544 ( 44) GTATGTGT 1 chr3R:18785920-18786040 ( 76) CTATTTGT 1 chr3L:10680030-10680150 ( 95) TTATGTAC 1 chr3R:19873294-19873414 ( 81) TTATGTAC 1 chr3R:10186191-10186311 ( 52) ATATGTAC 1 chr2L:4224538-4224658 ( 16) ATATGTAC 1 chr3R:26035239-26035359 ( 84) ATATGTGT 1 chr3L:8932011-8932131 ( 71) ATGTGTAT 1 chr2L:3580879-3580999 ( 72) CTGTGTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.25378 E= 1.1e-003 -15 -28 50 -9 -1333 -1333 -1333 178 30 -1333 164 -1333 -1333 -1333 -1333 178 -1333 -1333 55 127 -1333 -1333 -1333 178 34 -1333 161 -1333 -1333 172 -1333 5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 1.1e-003 0.262136 0.174757 0.291262 0.271845 0.000000 0.000000 0.000000 1.000000 0.359223 0.000000 0.640777 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300971 0.699029 0.000000 0.000000 0.000000 1.000000 0.368932 0.000000 0.631068 0.000000 0.000000 0.699029 0.000000 0.300971 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NTRTTTRC MEME-2 regular expression -------------------------------------------------------------------------------- [GTA]T[GA]T[TG]T[GA][CT] -------------------------------------------------------------------------------- Time 14.22 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCTGCTG MEME-3 width = 8 sites = 24 llr = 222 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 51a::91: probability G :9::9::a matrix T 5::9:19: bits 2.3 * * 2.1 * * 1.8 ** * * 1.6 ** ** * Relative 1.4 ******* Entropy 1.1 ******* (13.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGCTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14405127-14405247 22 7.00e-06 CTGCGTTGGA CGCTGCTG TTCGAGTTTT chr2R:22542624-22542744 39 7.00e-06 TTGCTTTTCA CGCTGCTG ATAAGCATTT chr3R:11666018-11666138 89 7.00e-06 TTACCTTTGT CGCTGCTG TTTTATCAGT chr2R:8327296-8327416 94 1.66e-05 ccgatgttgt tgctgctg ttgttgctgc chr3R:7086917-7087037 44 1.66e-05 ATTATTTCTA TGCTGCTG GAACGCTTCA chr3R:20948960-20949080 108 1.66e-05 gtgttgttct tgctgctg ctgct chr2R:13563451-13563571 71 1.66e-05 AATAATGGGA TGCTGCTG ATGAGTTTGC chr2L:12498674-12498794 44 1.66e-05 ttgttgctgc tgctgctg GTCGTCGCCA chr3R:17713109-17713229 38 1.66e-05 ttgctactgc tgctgctg cCGTTTCGGT chr3L:17971490-17971610 4 1.66e-05 tgc tgctgctg ctgcAGTGGG chr2R:8985719-8985839 57 1.66e-05 CAgccgcttc tgctgctg ctgctattgc chr2L:3607010-3607130 94 1.66e-05 ccgtagttgc tgctgctg ccgttgccgt chr2R:12876716-12876836 87 2.89e-05 TATAGCTACG CCCTGCTG GAATTCACAC chr3R:8712838-8712958 86 2.89e-05 TTAGCGGCGC CCCTGCTG ATAAGTCAGC chr3L:19169078-19169198 32 2.89e-05 TTCTGGTAGT CGCTGCCG CGGCAGCCGA chr3R:14817883-14818003 5 4.58e-05 ttat tgctgCCG AGAAGCGCGG chr2R:12119159-12119279 76 4.58e-05 ctcctgctgc tcctgctg ctactgctac chr3L:4108446-4108566 85 7.54e-05 AGGGGCTGAG CGCTGTTG AAAGCGGAAT chr2R:21871987-21872107 80 7.54e-05 GCGGTTCTCA CGCGGCTG TACACGCGGA chr2R:16271917-16272037 33 7.54e-05 CTATTATTTT CGCTACTG TGCGCCAGTG chr2R:19276446-19276566 48 7.54e-05 AAATGGTGGC CGCTGTTG GCGAGCTCTG chr2R:14575984-14576104 6 1.16e-04 GTTTG TGCCGCTG GAACTCTAAA chr3R:25491298-25491418 92 1.16e-04 CCACTGTACC TGCTACTG AAACTGGTTT chrX:5664337-5664457 68 1.23e-04 CTCTCCCCGG CGCTCCTG CTTCCGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14405127-14405247 7e-06 21_[+3]_91 chr2R:22542624-22542744 7e-06 38_[+3]_74 chr3R:11666018-11666138 7e-06 88_[+3]_24 chr2R:8327296-8327416 1.7e-05 93_[+3]_19 chr3R:7086917-7087037 1.7e-05 43_[+3]_69 chr3R:20948960-20949080 1.7e-05 107_[+3]_5 chr2R:13563451-13563571 1.7e-05 70_[+3]_42 chr2L:12498674-12498794 1.7e-05 43_[+3]_69 chr3R:17713109-17713229 1.7e-05 37_[+3]_75 chr3L:17971490-17971610 1.7e-05 3_[+3]_109 chr2R:8985719-8985839 1.7e-05 56_[+3]_56 chr2L:3607010-3607130 1.7e-05 93_[+3]_19 chr2R:12876716-12876836 2.9e-05 86_[+3]_26 chr3R:8712838-8712958 2.9e-05 85_[+3]_27 chr3L:19169078-19169198 2.9e-05 31_[+3]_81 chr3R:14817883-14818003 4.6e-05 4_[+3]_108 chr2R:12119159-12119279 4.6e-05 75_[+3]_37 chr3L:4108446-4108566 7.5e-05 84_[+3]_28 chr2R:21871987-21872107 7.5e-05 79_[+3]_33 chr2R:16271917-16272037 7.5e-05 32_[+3]_80 chr2R:19276446-19276566 7.5e-05 47_[+3]_65 chr2R:14575984-14576104 0.00012 5_[+3]_107 chr3R:25491298-25491418 0.00012 91_[+3]_21 chrX:5664337-5664457 0.00012 67_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCTGCTG width=8 seqs=24 chr2L:14405127-14405247 ( 22) CGCTGCTG 1 chr2R:22542624-22542744 ( 39) CGCTGCTG 1 chr3R:11666018-11666138 ( 89) CGCTGCTG 1 chr2R:8327296-8327416 ( 94) TGCTGCTG 1 chr3R:7086917-7087037 ( 44) TGCTGCTG 1 chr3R:20948960-20949080 ( 108) TGCTGCTG 1 chr2R:13563451-13563571 ( 71) TGCTGCTG 1 chr2L:12498674-12498794 ( 44) TGCTGCTG 1 chr3R:17713109-17713229 ( 38) TGCTGCTG 1 chr3L:17971490-17971610 ( 4) TGCTGCTG 1 chr2R:8985719-8985839 ( 57) TGCTGCTG 1 chr2L:3607010-3607130 ( 94) TGCTGCTG 1 chr2R:12876716-12876836 ( 87) CCCTGCTG 1 chr3R:8712838-8712958 ( 86) CCCTGCTG 1 chr3L:19169078-19169198 ( 32) CGCTGCCG 1 chr3R:14817883-14818003 ( 5) TGCTGCCG 1 chr2R:12119159-12119279 ( 76) TCCTGCTG 1 chr3L:4108446-4108566 ( 85) CGCTGTTG 1 chr2R:21871987-21872107 ( 80) CGCGGCTG 1 chr2R:16271917-16272037 ( 33) CGCTACTG 1 chr2R:19276446-19276566 ( 48) CGCTGTTG 1 chr2R:14575984-14576104 ( 6) TGCCGCTG 1 chr3R:25491298-25491418 ( 92) TGCTACTG 1 chrX:5664337-5664457 ( 68) CGCTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 2.7e+001 -1123 111 -1123 90 -1123 -76 208 -1123 -1123 224 -1123 -1123 -1123 -234 -230 166 -181 -234 208 -1123 -1123 211 -1123 -180 -1123 -135 -1123 166 -1123 -1123 228 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.7e+001 0.000000 0.458333 0.000000 0.541667 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.041667 0.041667 0.916667 0.083333 0.041667 0.875000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTGCTG MEME-3 regular expression -------------------------------------------------------------------------------- [TC]GCTGCTG -------------------------------------------------------------------------------- Time 20.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGAGCGA MEME-4 width = 8 sites = 10 llr = 108 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::7 pos.-specific C :a3::a:: probability G a:7:a:a3 matrix T :::::::: bits 2.3 ** *** 2.1 ** *** 1.8 ** **** 1.6 ** **** Relative 1.4 ******* Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGCGA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5571188-5571308 57 6.90e-06 ATTTACCAAA GCGAGCGA TTCGTATTAA chr3R:22357074-22357194 104 6.90e-06 cagacaGTGA GCGAGCGA GAGGGCAGG chr2R:18356428-18356548 65 6.90e-06 GGCTGGCAGT GCgagcga gaaagaaaga chr2L:3539423-3539543 74 6.90e-06 AGAACTTAGG GCGAGCGA AAGGGATGGC chr2L:3580879-3580999 20 1.18e-05 CACGAAAAGA GCGAGCGG AGAGCGGGAG chrX:5664337-5664457 40 1.18e-05 TTCAACGGGA GCGAGCGG AAGTGCGCAG chr2L:3608926-3609046 42 1.18e-05 CTGTGGAGTC GCGAGCGG TAATTAACAT chr2R:14186439-14186559 16 1.89e-05 AACGCTGATT GCCAGCGA GAGAGCCGAC chr3L:6612792-6612912 79 1.89e-05 TACACAAAGC GCCAGCGA CAATTACAGT chr2L:14524387-14524507 77 1.89e-05 TTTCAGATTT GCCAGCGA ACTGAACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5571188-5571308 6.9e-06 56_[+4]_56 chr3R:22357074-22357194 6.9e-06 103_[+4]_9 chr2R:18356428-18356548 6.9e-06 64_[+4]_48 chr2L:3539423-3539543 6.9e-06 73_[+4]_39 chr2L:3580879-3580999 1.2e-05 19_[+4]_93 chrX:5664337-5664457 1.2e-05 39_[+4]_73 chr2L:3608926-3609046 1.2e-05 41_[+4]_71 chr2R:14186439-14186559 1.9e-05 15_[+4]_97 chr3L:6612792-6612912 1.9e-05 78_[+4]_34 chr2L:14524387-14524507 1.9e-05 76_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGCGA width=8 seqs=10 chr3R:5571188-5571308 ( 57) GCGAGCGA 1 chr3R:22357074-22357194 ( 104) GCGAGCGA 1 chr2R:18356428-18356548 ( 65) GCGAGCGA 1 chr2L:3539423-3539543 ( 74) GCGAGCGA 1 chr2L:3580879-3580999 ( 20) GCGAGCGG 1 chrX:5664337-5664457 ( 40) GCGAGCGG 1 chr2L:3608926-3609046 ( 42) GCGAGCGG 1 chr2R:14186439-14186559 ( 16) GCCAGCGA 1 chr3L:6612792-6612912 ( 79) GCCAGCGA 1 chr2L:14524387-14524507 ( 77) GCCAGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 2.1e+003 -997 -997 228 -997 -997 224 -997 -997 -997 50 176 -997 178 -997 -997 -997 -997 -997 228 -997 -997 224 -997 -997 -997 -997 228 -997 126 -997 54 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.700000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGCGA MEME-4 regular expression -------------------------------------------------------------------------------- GC[GC]AGCG[AG] -------------------------------------------------------------------------------- Time 26.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCGCGA MEME-5 width = 8 sites = 5 llr = 58 E-value = 4.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C a:2a:a:: probability G :a8:a:a: matrix T :::::::: bits 2.3 ** **** 2.1 ** **** 1.8 ** ***** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCGCGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6465643-6465763 13 5.01e-06 CAGACTCGTC CGGCGCGA GTTTCGACTT chr3R:26030737-26030857 71 5.01e-06 TTTATTGCGC CGGCGCGA CGCTTATTAT chr2R:19276446-19276566 98 5.01e-06 TTCCGCTTTC CGGCGCGA GCTTTCGATC chr2L:3611891-3612011 40 5.01e-06 ATAAAAAAAA CGGCGCGA GGGGCGACAA chr3R:19326162-19326282 91 1.02e-05 TCACCTTCAC CGCCGCGA ATCGTACTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6465643-6465763 5e-06 12_[+5]_100 chr3R:26030737-26030857 5e-06 70_[+5]_42 chr2R:19276446-19276566 5e-06 97_[+5]_15 chr2L:3611891-3612011 5e-06 39_[+5]_73 chr3R:19326162-19326282 1e-05 90_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCGCGA width=8 seqs=5 chr2L:6465643-6465763 ( 13) CGGCGCGA 1 chr3R:26030737-26030857 ( 71) CGGCGCGA 1 chr2R:19276446-19276566 ( 98) CGGCGCGA 1 chr2L:3611891-3612011 ( 40) CGGCGCGA 1 chr3R:19326162-19326282 ( 91) CGCCGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 4.9e+004 -897 224 -897 -897 -897 -897 228 -897 -897 -8 195 -897 -897 224 -897 -897 -897 -897 228 -897 -897 224 -897 -897 -897 -897 228 -897 178 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCGCGA MEME-5 regular expression -------------------------------------------------------------------------------- CG[GC]CGCGA -------------------------------------------------------------------------------- Time 32.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3607010-3607130 5.91e-03 60_[+3(1.66e-05)]_10_[+3(4.58e-05)]_\ 4_[+3(1.66e-05)]_13_[+3(1.66e-05)]_1 chr2L:3539423-3539543 5.95e-03 73_[+4(6.90e-06)]_12_[+4(3.57e-05)]_\ 19 chrX:9132689-9132809 3.79e-02 65_[+1(1.18e-05)]_47 chr2L:3611891-3612011 5.37e-04 39_[+5(5.01e-06)]_73 chr2R:11796293-11796413 7.82e-01 120 chr2L:14432678-14432798 3.13e-01 120 chr3R:26222400-26222520 5.00e-01 120 chr2R:8985719-8985839 5.57e-03 56_[+3(1.66e-05)]_56 chr2L:3608926-3609046 3.09e-03 41_[+4(1.18e-05)]_71 chr3L:19169078-19169198 1.95e-03 31_[+3(2.89e-05)]_1_[+1(4.26e-05)]_\ 72 chr3R:21163424-21163544 5.18e-01 120 chr2L:7525392-7525512 8.40e-01 120 chr2L:7571979-7572099 6.10e-01 120 chr2L:5113583-5113703 7.27e-01 120 chr2L:16847022-16847142 5.75e-01 120 chr2R:19276446-19276566 5.04e-05 47_[+3(7.54e-05)]_42_[+5(5.01e-06)]_\ 15 chr3L:17971490-17971610 1.36e-02 [+3(1.66e-05)]_112 chr3R:23284422-23284542 4.00e-01 120 chr3R:17713109-17713229 2.04e-02 34_[+3(1.66e-05)]_78 chr3R:29585916-29586036 2.56e-01 120 chr2L:12498674-12498794 1.57e-04 13_[+3(2.89e-05)]_16_[+3(1.66e-05)]_\ 75 chr3R:20548398-20548518 2.90e-01 120 chrX:19261903-19262023 9.27e-03 25_[+1(4.26e-05)]_87 chr3L:12714751-12714871 2.91e-02 74_[+1(4.26e-05)]_38 chr2R:12119159-12119279 1.37e-01 66_[+3(4.58e-05)]_1_[+3(4.58e-05)]_\ 37 chr3R:19873294-19873414 1.31e-01 120 chr3L:14958773-14958893 7.85e-01 120 chr3R:10567023-10567143 1.79e-03 74_[+1(4.87e-06)]_38 chrX:6638285-6638405 5.43e-01 120 chr2R:19138072-19138192 8.64e-02 120 chr3L:17008794-17008914 6.25e-01 120 chr2L:10397103-10397223 1.25e-01 120 chr3R:19997551-19997671 2.10e-01 120 chr3L:22458878-22458998 3.81e-01 120 chr3R:24093561-24093681 8.70e-01 120 chr3R:26030737-26030857 6.62e-03 70_[+5(5.01e-06)]_42 chr2L:3570636-3570756 4.79e-01 120 chr2R:11525805-11525925 1.60e-03 87_[+2(5.95e-05)]_25 chr3L:11384432-11384552 4.94e-01 120 chr3R:11688321-11688441 6.27e-01 120 chr3L:6341717-6341837 1.13e-01 120 chr3L:8932011-8932131 6.69e-01 120 chr3L:17625137-17625257 6.09e-01 120 chr2L:5044904-5045024 9.29e-01 120 chr3R:8712838-8712958 2.32e-03 85_[+3(2.89e-05)]_27 chr3R:5320791-5320911 4.05e-01 120 chr3R:25491298-25491418 2.14e-01 120 chr2L:7528250-7528370 8.27e-01 120 chr2L:14524387-14524507 8.88e-03 76_[+4(1.89e-05)]_36 chr3R:15582943-15583063 2.47e-01 120 chrX:5664337-5664457 7.76e-06 [+1(1.18e-05)]_31_[+4(1.18e-05)]_73 chr3R:5287088-5287208 5.26e-02 120 chrX:17695008-17695128 9.58e-01 120 chr3R:26035239-26035359 4.54e-02 120 chr2R:16271917-16272037 1.20e-01 32_[+3(7.54e-05)]_80 chr3L:12079105-12079225 7.51e-01 120 chr2L:3580879-3580999 1.27e-02 19_[+4(1.18e-05)]_93 chr3R:11666018-11666138 3.35e-03 88_[+3(7.00e-06)]_24 chr2L:14616075-14616195 1.84e-05 17_[+2(5.95e-05)]_27_[+1(1.68e-05)]_\ 60 chr3R:29066439-29066559 1.30e-01 120 chrX:14905775-14905895 2.84e-01 120 chr2R:7953031-7953151 2.11e-01 120 chr3L:20954217-20954337 4.24e-02 120 chr3L:3789081-3789201 2.61e-01 120 chr2L:20390165-20390285 7.54e-01 120 chr3R:19326162-19326282 9.94e-04 90_[+5(1.02e-05)]_22 chr3R:23803826-23803946 1.77e-03 83_[+2(5.95e-05)]_29 chr2R:18605500-18605620 4.41e-02 37_[+2(1.31e-05)]_75 chr3L:5947233-5947353 4.83e-01 120 chr3R:5653984-5654104 4.47e-01 120 chr3L:4355363-4355483 9.92e-01 120 chr2R:9060154-9060274 3.96e-02 91_[+1(7.98e-05)]_21 chr3R:5746774-5746894 5.37e-01 120 chr2R:23611387-23611507 6.37e-02 43_[+2(7.29e-05)]_69 chr3R:13441865-13441985 3.46e-02 120 chr3L:16494925-16495045 6.58e-01 120 chr4:1199332-1199452 5.73e-01 120 chrX:20433684-20433804 9.58e-01 120 chr2R:13470272-13470392 6.65e-01 120 chr3R:19613060-19613180 9.37e-01 120 chr2L:19019305-19019425 7.10e-01 120 chr3L:960734-960854 7.19e-02 54_[+2(3.16e-05)]_58 chr2L:2864719-2864839 1.50e-03 74_[+4(1.89e-05)]_38 chr3L:10893619-10893739 9.98e-01 120 chr2R:22390381-22390501 4.14e-01 120 chr2L:6789584-6789704 2.39e-01 120 chr3R:19166096-19166216 1.20e-01 102_[+2(3.16e-05)]_10 chr3R:16764196-16764316 2.32e-01 120 chr2R:9610501-9610621 2.04e-01 120 chr2R:22542624-22542744 5.53e-03 38_[+3(7.00e-06)]_74 chr3R:19571377-19571497 4.14e-02 120 chr2L:3773025-3773145 1.36e-01 120 chr2R:11426862-11426982 9.89e-01 120 chr2R:16610078-16610198 7.10e-01 120 chr2R:15735242-15735362 8.30e-02 36_[+1(5.59e-05)]_7_[+1(1.18e-05)]_\ 61 chr3L:6140303-6140423 7.30e-02 55_[+2(1.31e-05)]_57 chr3R:21081279-21081399 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********************************************************************************