******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/oc.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:15777978-15778098 1.0000 120 chr3R:4867055-4867175 1.0000 120 chrX:18996810-18996930 1.0000 120 chr3L:14343712-14343832 1.0000 120 chr3R:25012155-25012275 1.0000 120 chr2R:22248795-22248915 1.0000 120 chr3L:22403779-22403899 1.0000 120 chr2R:18198539-18198659 1.0000 120 chr3L:22437250-22437370 1.0000 120 chr3L:22193045-22193165 1.0000 120 chr3R:19510477-19510597 1.0000 120 chr3R:8885091-8885211 1.0000 120 chr3R:19052614-19052734 1.0000 120 chr2L:4295792-4295912 1.0000 120 chr2L:7259639-7259759 1.0000 120 chr2L:19296904-19297024 1.0000 120 chr2L:14441448-14441568 1.0000 120 chr3L:13083571-13083691 1.0000 120 chr2L:680011-680131 1.0000 120 chr3R:31339957-31340077 1.0000 120 chr2R:15914958-15915078 1.0000 120 chrX:17236626-17236746 1.0000 120 chrX:8667209-8667329 1.0000 120 chr3L:11540075-11540195 1.0000 120 chrX:17269446-17269566 1.0000 120 chr3R:23432600-23432720 1.0000 120 chr2R:14924639-14924759 1.0000 120 chr2R:17443350-17443470 1.0000 120 chr3L:20918221-20918341 1.0000 120 chr3L:20565835-20565955 1.0000 120 chrX:8662398-8662518 1.0000 120 chr2R:21859969-21860089 1.0000 120 chr2L:10149423-10149543 1.0000 120 chr3L:14168031-14168151 1.0000 120 chr2L:1465231-1465351 1.0000 120 chr2R:21366139-21366259 1.0000 120 chrX:6752083-6752203 1.0000 120 chr2R:20079423-20079543 1.0000 120 chr2L:6549037-6549157 1.0000 120 chr3R:17705266-17705386 1.0000 120 chr2R:24750736-24750856 1.0000 120 chr3R:22146700-22146820 1.0000 120 chr2R:22135469-22135589 1.0000 120 chr2R:18310502-18310622 1.0000 120 chr2R:20179862-20179982 1.0000 120 chrX:1213241-1213361 1.0000 120 chr2R:20029897-20030017 1.0000 120 chr2R:17612306-17612426 1.0000 120 chr2R:11731063-11731183 1.0000 120 chr3R:15125900-15126020 1.0000 120 chr3L:2430267-2430387 1.0000 120 chr3R:13308211-13308331 1.0000 120 chr2L:18515758-18515878 1.0000 120 chr2R:18260616-18260736 1.0000 120 chrX:12458002-12458122 1.0000 120 chr4:821020-821140 1.0000 120 chr2R:7431298-7431418 1.0000 120 chr2R:11728225-11728345 1.0000 120 chr2R:18218216-18218336 1.0000 120 chr3R:19105413-19105533 1.0000 120 chr2R:20077154-20077274 1.0000 120 chr3L:13137803-13137923 1.0000 120 chrX:8616908-8617028 1.0000 120 chr3L:20953935-20954055 1.0000 120 chr3L:8155490-8155610 1.0000 120 chr2R:6510049-6510169 1.0000 120 chr2R:24589179-24589299 1.0000 120 chr3R:8254512-8254632 1.0000 120 chr2R:9035022-9035142 1.0000 120 chr3R:22757290-22757410 1.0000 120 chr2R:20058768-20058888 1.0000 120 chr3L:12711576-12711696 1.0000 120 chr3L:7553169-7553289 1.0000 120 chr3L:13064485-13064605 1.0000 120 chr2R:20080129-20080249 1.0000 120 chr3R:8884463-8884583 1.0000 120 chr3L:715198-715318 1.0000 120 chr2R:20631752-20631872 1.0000 120 chr2R:15837589-15837709 1.0000 120 chrX:17353046-17353166 1.0000 120 chr2R:21849645-21849765 1.0000 120 chr2L:6535217-6535337 1.0000 120 chr3L:13099276-13099396 1.0000 120 chrX:8663934-8664054 1.0000 120 chr2R:22276709-22276829 1.0000 120 chr3L:9569744-9569864 1.0000 120 chr3R:10505666-10505786 1.0000 120 chr2L:19867457-19867577 1.0000 120 chr2R:12548872-12548992 1.0000 120 chr2L:18624531-18624651 1.0000 120 chr3L:15702394-15702514 1.0000 120 chr3L:3353410-3353530 1.0000 120 chr3R:23396647-23396767 1.0000 120 chr3L:21765288-21765408 1.0000 120 chrX:9733308-9733428 1.0000 120 chr2R:18787326-18787446 1.0000 120 chr2R:11536922-11537042 1.0000 120 chr2L:5260406-5260526 1.0000 120 chr2R:12700963-12701083 1.0000 120 chr3R:14001325-14001445 1.0000 120 chrX:2965406-2965526 1.0000 120 chr3R:29576160-29576280 1.0000 120 chr3L:15030785-15030905 1.0000 120 chr3R:16846196-16846316 1.0000 120 chr2L:7562635-7562755 1.0000 120 chr3R:10687421-10687541 1.0000 120 chr3L:12685613-12685733 1.0000 120 chr3L:2436864-2436984 1.0000 120 chr3R:5074812-5074932 1.0000 120 chr2R:20920152-20920272 1.0000 120 chr2L:18767954-18768074 1.0000 120 chr2L:14181956-14182076 1.0000 120 chr3R:26890629-26890749 1.0000 120 chr3R:17016362-17016482 1.0000 120 chr3L:9550949-9551069 1.0000 120 chr3R:29818438-29818558 1.0000 120 chr2R:7191679-7191799 1.0000 120 chr3L:21260412-21260532 1.0000 120 chr3R:20597708-20597828 1.0000 120 chr2L:10758444-10758564 1.0000 120 chr3L:4398777-4398897 1.0000 120 chr2R:19894205-19894325 1.0000 120 chrX:16643715-16643835 1.0000 120 chr2R:22246732-22246852 1.0000 120 chr3R:31482982-31483102 1.0000 120 chr3R:14672632-14672752 1.0000 120 chr3L:5871091-5871211 1.0000 120 chr3R:24621216-24621336 1.0000 120 chrX:5040272-5040392 1.0000 120 chr3R:8878289-8878409 1.0000 120 chr2L:6711106-6711226 1.0000 120 chr2R:14348212-14348332 1.0000 120 chr2L:11392226-11392346 1.0000 120 chr3R:24206486-24206606 1.0000 120 chr3R:19805049-19805169 1.0000 120 chrX:3834718-3834838 1.0000 120 chrX:6620025-6620145 1.0000 120 chr2L:19232128-19232248 1.0000 120 chr3R:13550517-13550637 1.0000 120 chr3L:14142666-14142786 1.0000 120 chr3L:6554512-6554632 1.0000 120 chr3R:8198476-8198596 1.0000 120 chr3R:6252374-6252494 1.0000 120 chr2L:14404197-14404317 1.0000 120 chr3R:10569953-10570073 1.0000 120 chr2R:14347531-14347651 1.0000 120 chr2L:8546299-8546419 1.0000 120 chrX:1279438-1279558 1.0000 120 chr2R:13465084-13465204 1.0000 120 chr3R:4246708-4246828 1.0000 120 chr3R:17113486-17113606 1.0000 120 chr3L:15683797-15683917 1.0000 120 chr3L:21647454-21647574 1.0000 120 chr2R:14974470-14974590 1.0000 120 chr2L:8294188-8294308 1.0000 120 chrX:17724343-17724463 1.0000 120 chrX:11534030-11534150 1.0000 120 chrX:18973334-18973454 1.0000 120 chr2R:14788772-14788892 1.0000 120 chr3R:24025436-24025556 1.0000 120 chr2L:8832172-8832292 1.0000 120 chr2L:19829390-19829510 1.0000 120 chr3L:3669923-3670043 1.0000 120 chrX:8643530-8643650 1.0000 120 chr2R:16219047-16219167 1.0000 120 chr2L:7705103-7705223 1.0000 120 chr3L:20977429-20977549 1.0000 120 chr3R:22265583-22265703 1.0000 120 chr2L:14578359-14578479 1.0000 120 chr3R:22055856-22055976 1.0000 120 chr3L:7956835-7956955 1.0000 120 chrX:10246831-10246951 1.0000 120 chr3R:22143591-22143711 1.0000 120 chr3R:13927664-13927784 1.0000 120 chr3L:4395335-4395455 1.0000 120 chr3R:29198400-29198520 1.0000 120 chrX:8639598-8639718 1.0000 120 chr3L:20952937-20953057 1.0000 120 chr2L:387614-387734 1.0000 120 chr3L:20982865-20982985 1.0000 120 chr2R:15888410-15888530 1.0000 120 chr3R:16334840-16334960 1.0000 120 chrX:17678620-17678740 1.0000 120 chrX:7975674-7975794 1.0000 120 chr3R:21501225-21501345 1.0000 120 chr2L:3828414-3828534 1.0000 120 chr2R:11549196-11549316 1.0000 120 chr3L:19221249-19221369 1.0000 120 chr2L:6504548-6504668 1.0000 120 chrX:17408191-17408311 1.0000 120 chr3R:13445575-13445695 1.0000 120 chr2R:16796567-16796687 1.0000 120 chr2L:20804881-20805001 1.0000 120 chr3R:9903517-9903637 1.0000 120 chr2R:20045020-20045140 1.0000 120 chr3L:5986053-5986173 1.0000 120 chr3L:21863515-21863635 1.0000 120 chr3L:5578846-5578966 1.0000 120 chr3L:9871673-9871793 1.0000 120 chr2L:5432902-5433022 1.0000 120 chrX:3050393-3050513 1.0000 120 chr2R:15902749-15902869 1.0000 120 chr3R:25549868-25549988 1.0000 120 chr2L:7382444-7382564 1.0000 120 chr2R:7189610-7189730 1.0000 120 chr3R:31438947-31439067 1.0000 120 chr2L:10607948-10608068 1.0000 120 chr3L:16868268-16868388 1.0000 120 chr2R:18263674-18263794 1.0000 120 chr3L:3651619-3651739 1.0000 120 chr3L:15349116-15349236 1.0000 120 chr2L:14302066-14302186 1.0000 120 chr3L:8363422-8363542 1.0000 120 chr2L:14311438-14311558 1.0000 120 chr2L:9417773-9417893 1.0000 120 chr2R:10546188-10546308 1.0000 120 chr2R:15922831-15922951 1.0000 120 chrX:8660456-8660576 1.0000 120 chr2L:18766850-18766970 1.0000 120 chr3L:14168845-14168965 1.0000 120 chrX:8672038-8672158 1.0000 120 chr2L:18620289-18620409 1.0000 120 chr2R:22194148-22194268 1.0000 120 chr2L:392683-392803 1.0000 120 chr3L:8835558-8835678 1.0000 120 chr3L:11377346-11377466 1.0000 120 chr3L:15254533-15254653 1.0000 120 chr3R:28829035-28829155 1.0000 120 chr3R:5031145-5031265 1.0000 120 chr3R:27186980-27187100 1.0000 120 chr3L:10438800-10438920 1.0000 120 chr3L:17935273-17935393 1.0000 120 chr2R:15355283-15355403 1.0000 120 chr3L:4206035-4206155 1.0000 120 chr3L:4382713-4382833 1.0000 120 chr3R:31542141-31542261 1.0000 120 chr3L:6365637-6365757 1.0000 120 chr2R:18586435-18586555 1.0000 120 chr3L:5970324-5970444 1.0000 120 chr2L:19895002-19895122 1.0000 120 chr2R:10687447-10687567 1.0000 120 chr2R:11514348-11514468 1.0000 120 chr2R:7288638-7288758 1.0000 120 chr3L:8075030-8075150 1.0000 120 chr2R:11482596-11482716 1.0000 120 chr2L:17541270-17541390 1.0000 120 chr2L:15001482-15001602 1.0000 120 chr3R:22438565-22438685 1.0000 120 chr2R:9036698-9036818 1.0000 120 chr2L:10749712-10749832 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_oc/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/oc.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.229 G 0.218 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.229 G 0.218 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAKCCGMT MEME-1 width = 8 sites = 69 llr = 584 E-value = 7.1e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa::1:5: pos.-specific C :::86:5: probability G ::623a:: matrix T ::4::::a bits 2.2 * 2.0 ** * 1.8 ** * * 1.5 ** * * * Relative 1.3 ** * * * Entropy 1.1 **** *** (12.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGCCGCT consensus T G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27186980-27187100 80 1.19e-05 AATTAACCGA AAGCCGCT TAGGAGCTGC chr2L:7382444-7382564 29 1.19e-05 CAAACCACTT AAGCCGCT TAGTGGTGTC chr3R:22265583-22265703 43 1.19e-05 ATTTTTTCAT AAGCCGCT TTCAAGCGTC chr3R:17113486-17113606 88 1.19e-05 CAGAGTTTTT AAGCCGCT CAAAAAGCAC chr3R:29576160-29576280 66 1.19e-05 CAACAATCCT AAGCCGCT TACCGCTTGT chr2R:21366139-21366259 78 1.19e-05 TAACTCTGGC AAGCCGCT TAGATCTAGA chr2L:1465231-1465351 10 1.19e-05 TCCCGGAAT AAGCCGCT TACGGGGAAA chr3L:20918221-20918341 92 1.19e-05 GCAAGCATTT AAGCCGCT AGCGATGGAG chr3R:25012155-25012275 13 1.19e-05 CAGTTGTCGT AAGCCGCT AATCGCTGCC chr2L:387614-387734 34 2.61e-05 AATGATCCAT AAGCCGAT ACCTAATGGA chr3L:3669923-3670043 65 2.61e-05 AATCAACTGA AAGCCGAT TTCCAGAGAA chr3R:10569953-10570073 90 2.61e-05 CTGTGCCACT AAGCCGAT TATAAAGCGT chr3R:13550517-13550637 74 2.61e-05 GAAGGCGTTT AAGCCGAT TACCCAGTTA chr3R:19805049-19805169 47 2.61e-05 CCTAAAACTA AAGCCGAT TAGGTAAAAG chr3R:29818438-29818558 70 2.61e-05 GATTTGGCCT AAGCCGAT TAGGCTAGAA chr2L:6535217-6535337 16 2.61e-05 GCCAAAAGTT AAGCCGAT TAATGCGTTG chr3R:19105413-19105533 30 2.61e-05 ACAACGACAT AAGCCGAT TTGGGTGTTT chr4:821020-821140 51 2.61e-05 GCGTGATTCC AAGCCGAT TAGCTTAGCT chr2L:10149423-10149543 3 2.61e-05 GT AAGCCGAT CAATCTGACC chr3R:19510477-19510597 107 2.61e-05 GGAAAGGCGA AAGCCGAT TATTTA chr3L:7956835-7956955 40 4.14e-05 ATTAAATTGT AATCCGCT TAAATGTGTT chr2L:8546299-8546419 101 4.14e-05 CATCTACGTT AATCCGCT GAGATTAGCC chr2R:22276709-22276829 90 4.14e-05 CATTAATTAT AATCCGCT TAAAAGTTTC chr2R:20077154-20077274 28 4.14e-05 TGTAATAAAA AATCCGCT TATCGCTCTA chr2R:24750736-24750856 62 4.14e-05 TTATTAAGAA AATCCGCT TAGTGTCCGG chr3R:31339957-31340077 11 4.14e-05 CCCTTTAACT AATCCGCT TAAGTGACTT chrX:3834718-3834838 50 5.27e-05 ATAAGTCCCT AAGCGGCT TTTGGCCAGC chr2R:18787326-18787446 79 5.27e-05 GAGCAGATCT AAGCGGCT TAACTCTAAA chr3R:17705266-17705386 17 5.27e-05 GGCGAATTTA AAGCGGCT TACAAAATGC chr2L:4295792-4295912 37 5.27e-05 GGCGCACAAT AAGCGGCT TACGTGCGCC chr3L:22403779-22403899 56 5.27e-05 ATTAGCCGAT AAGCGGCT TAGCTGCCAG chr3L:15777978-15778098 24 5.27e-05 TACCGGAGAT AAGCGGCT TAGCTGGCTT chr3L:4206035-4206155 90 7.10e-05 AATCGGTGAT AATCCGAT GGCTATTTAT chr3R:20597708-20597828 51 7.10e-05 CACAGGACAT AATCCGAT CACAAAAAGC chr3R:5074812-5074932 88 7.10e-05 AGATGATGCT AATCCGAT AGCAATCGGA chr3L:12685613-12685733 51 7.10e-05 CACCGCAGTT AATCCGAT TATGAAACGC chr3R:10687421-10687541 55 7.10e-05 GCCGAATACG AATCCGAT GTATATATCA chrX:2965406-2965526 69 7.10e-05 CGTCTAACTA AATCCGAT TATAACTAAT chr3L:20953935-20954055 21 7.10e-05 AATTACATTT AATCCGAT TAAAGTTCAG chr2R:7431298-7431418 31 7.10e-05 AGTTAAACAT AATCCGAT CATGCATTAT chr2R:20179862-20179982 23 7.10e-05 CTCTAAAAAA AATCCGAT GATCCCATGA chr3L:15030785-15030905 50 8.45e-05 AGCCATGAAT AAGCGGAT TATTACACAA chr2L:14441448-14441568 52 8.45e-05 GTTTGAGGTT AAGCGGAT TTTGTAATTA chr2L:19296904-19297024 40 8.45e-05 TGCGACTGCT AAGCGGAT TAATTTAGTG chr3R:31482982-31483102 107 9.91e-05 AGCCCCAGGA AATCGGCT TATGGG chr2R:15837589-15837709 55 9.91e-05 GGGGCGGGAC AATCGGCT TAACTTCTTC chr2R:6510049-6510169 68 9.91e-05 AGACCATCAT AATCGGCT TAAAAAGTGT chr3L:14343712-14343832 75 9.91e-05 CCACTTTTTA AATCGGCT TAAATTATGA chr2R:15355283-15355403 37 1.10e-04 ATTACGCATA AAGGCGCT TAAGCCGAAC chr2L:8832172-8832292 52 1.28e-04 TACATAAACA AATCGGAT TAGTTGACAA chr3L:14142666-14142786 42 1.28e-04 AAAGCCCCCA AATCGGAT TGCGGCCCAG chr3L:4382713-4382833 10 1.55e-04 ATTATGACG AAGGCGAT GGGCAACCCA chr3L:20952937-20953057 33 1.55e-04 GACTGACGCT AAGCAGCT CCGAGATTAA chr2R:7191679-7191799 96 1.55e-04 ACTAAGCTAA AAGCAGCT TAATGCACTC chrX:17353046-17353166 59 1.55e-04 CTAATCCCCT AAGCAGCT TAAAGATCGC chr3R:8884463-8884583 10 1.55e-04 CAAAGAGCT AAGGCGAT TCAAATAGAC chr2R:20080129-20080249 45 1.55e-04 gacgatgtgt aaggcgat gatgattgcg chr3R:13308211-13308331 69 1.55e-04 GTTTGTTTAT AAGCAGCT CGGAGATTAT chr2R:18310502-18310622 42 1.55e-04 ATTGAATTGT AAGCAGCT TATATAATTA chrX:17236626-17236746 105 1.55e-04 TGCCACACAT AAGGCGAT TAGCCCGA chr2L:19232128-19232248 8 1.72e-04 GCCACTT AAGCAGAT TTAGTTAATT chr2L:18766850-18766970 50 1.87e-04 ATGCTGTCAT AATGCGCT ACGAATTCAT chr3R:24025436-24025556 89 1.87e-04 GATCGCGGTT AATGCGCT TAGAGGAGAA chr2L:8294188-8294308 90 2.33e-04 AATTCTACGA AATCAGCT TTAAGCCATT chrX:6620025-6620145 73 2.33e-04 TTGAGACGAT AATGCGAT CATCTTGTAT chrX:18996810-18996930 2 2.33e-04 T AATCAGCT TAGCGGAATT chr3R:21501225-21501345 97 2.46e-04 CCAGCGACAA AAGGGGAT AACAAGATGC chr3R:8254512-8254632 69 2.46e-04 TTAACCGGCA AAGGGGAT TAGCAAGCCG chr2R:17443350-17443470 88 2.46e-04 GAACGGGTGC AAGGGGAT GAGCTGAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27186980-27187100 1.2e-05 79_[+1]_33 chr2L:7382444-7382564 1.2e-05 28_[+1]_84 chr3R:22265583-22265703 1.2e-05 42_[+1]_70 chr3R:17113486-17113606 1.2e-05 87_[+1]_25 chr3R:29576160-29576280 1.2e-05 65_[+1]_47 chr2R:21366139-21366259 1.2e-05 77_[+1]_35 chr2L:1465231-1465351 1.2e-05 9_[+1]_103 chr3L:20918221-20918341 1.2e-05 91_[+1]_21 chr3R:25012155-25012275 1.2e-05 12_[+1]_100 chr2L:387614-387734 2.6e-05 33_[+1]_79 chr3L:3669923-3670043 2.6e-05 64_[+1]_48 chr3R:10569953-10570073 2.6e-05 89_[+1]_23 chr3R:13550517-13550637 2.6e-05 73_[+1]_39 chr3R:19805049-19805169 2.6e-05 46_[+1]_66 chr3R:29818438-29818558 2.6e-05 69_[+1]_43 chr2L:6535217-6535337 2.6e-05 15_[+1]_97 chr3R:19105413-19105533 2.6e-05 29_[+1]_83 chr4:821020-821140 2.6e-05 50_[+1]_62 chr2L:10149423-10149543 2.6e-05 2_[+1]_110 chr3R:19510477-19510597 2.6e-05 106_[+1]_6 chr3L:7956835-7956955 4.1e-05 39_[+1]_73 chr2L:8546299-8546419 4.1e-05 100_[+1]_12 chr2R:22276709-22276829 4.1e-05 89_[+1]_23 chr2R:20077154-20077274 4.1e-05 27_[+1]_85 chr2R:24750736-24750856 4.1e-05 61_[+1]_51 chr3R:31339957-31340077 4.1e-05 10_[+1]_102 chrX:3834718-3834838 5.3e-05 49_[+1]_63 chr2R:18787326-18787446 5.3e-05 78_[+1]_34 chr3R:17705266-17705386 5.3e-05 16_[+1]_96 chr2L:4295792-4295912 5.3e-05 36_[+1]_76 chr3L:22403779-22403899 5.3e-05 55_[+1]_57 chr3L:15777978-15778098 5.3e-05 23_[+1]_89 chr3L:4206035-4206155 7.1e-05 89_[+1]_23 chr3R:20597708-20597828 7.1e-05 50_[+1]_62 chr3R:5074812-5074932 7.1e-05 87_[+1]_25 chr3L:12685613-12685733 7.1e-05 50_[+1]_62 chr3R:10687421-10687541 7.1e-05 54_[+1]_58 chrX:2965406-2965526 7.1e-05 68_[+1]_44 chr3L:20953935-20954055 7.1e-05 20_[+1]_92 chr2R:7431298-7431418 7.1e-05 30_[+1]_82 chr2R:20179862-20179982 7.1e-05 22_[+1]_90 chr3L:15030785-15030905 8.4e-05 49_[+1]_63 chr2L:14441448-14441568 8.4e-05 51_[+1]_61 chr2L:19296904-19297024 8.4e-05 39_[+1]_73 chr3R:31482982-31483102 9.9e-05 106_[+1]_6 chr2R:15837589-15837709 9.9e-05 54_[+1]_58 chr2R:6510049-6510169 9.9e-05 67_[+1]_45 chr3L:14343712-14343832 9.9e-05 74_[+1]_38 chr2R:15355283-15355403 0.00011 36_[+1]_76 chr2L:8832172-8832292 0.00013 51_[+1]_61 chr3L:14142666-14142786 0.00013 41_[+1]_71 chr3L:4382713-4382833 0.00016 9_[+1]_103 chr3L:20952937-20953057 0.00016 32_[+1]_80 chr2R:7191679-7191799 0.00016 95_[+1]_17 chrX:17353046-17353166 0.00016 58_[+1]_54 chr3R:8884463-8884583 0.00016 9_[+1]_103 chr2R:20080129-20080249 0.00016 44_[+1]_68 chr3R:13308211-13308331 0.00016 68_[+1]_44 chr2R:18310502-18310622 0.00016 41_[+1]_71 chrX:17236626-17236746 0.00016 104_[+1]_8 chr2L:19232128-19232248 0.00017 7_[+1]_105 chr2L:18766850-18766970 0.00019 49_[+1]_63 chr3R:24025436-24025556 0.00019 88_[+1]_24 chr2L:8294188-8294308 0.00023 89_[+1]_23 chrX:6620025-6620145 0.00023 72_[+1]_40 chrX:18996810-18996930 0.00023 1_[+1]_111 chr3R:21501225-21501345 0.00025 96_[+1]_16 chr3R:8254512-8254632 0.00025 68_[+1]_44 chr2R:17443350-17443470 0.00025 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAKCCGMT width=8 seqs=69 chr3R:27186980-27187100 ( 80) AAGCCGCT 1 chr2L:7382444-7382564 ( 29) AAGCCGCT 1 chr3R:22265583-22265703 ( 43) AAGCCGCT 1 chr3R:17113486-17113606 ( 88) AAGCCGCT 1 chr3R:29576160-29576280 ( 66) AAGCCGCT 1 chr2R:21366139-21366259 ( 78) AAGCCGCT 1 chr2L:1465231-1465351 ( 10) AAGCCGCT 1 chr3L:20918221-20918341 ( 92) AAGCCGCT 1 chr3R:25012155-25012275 ( 13) AAGCCGCT 1 chr2L:387614-387734 ( 34) AAGCCGAT 1 chr3L:3669923-3670043 ( 65) AAGCCGAT 1 chr3R:10569953-10570073 ( 90) AAGCCGAT 1 chr3R:13550517-13550637 ( 74) AAGCCGAT 1 chr3R:19805049-19805169 ( 47) AAGCCGAT 1 chr3R:29818438-29818558 ( 70) AAGCCGAT 1 chr2L:6535217-6535337 ( 16) AAGCCGAT 1 chr3R:19105413-19105533 ( 30) AAGCCGAT 1 chr4:821020-821140 ( 51) AAGCCGAT 1 chr2L:10149423-10149543 ( 3) AAGCCGAT 1 chr3R:19510477-19510597 ( 107) AAGCCGAT 1 chr3L:7956835-7956955 ( 40) AATCCGCT 1 chr2L:8546299-8546419 ( 101) AATCCGCT 1 chr2R:22276709-22276829 ( 90) AATCCGCT 1 chr2R:20077154-20077274 ( 28) AATCCGCT 1 chr2R:24750736-24750856 ( 62) AATCCGCT 1 chr3R:31339957-31340077 ( 11) AATCCGCT 1 chrX:3834718-3834838 ( 50) AAGCGGCT 1 chr2R:18787326-18787446 ( 79) AAGCGGCT 1 chr3R:17705266-17705386 ( 17) AAGCGGCT 1 chr2L:4295792-4295912 ( 37) AAGCGGCT 1 chr3L:22403779-22403899 ( 56) AAGCGGCT 1 chr3L:15777978-15778098 ( 24) AAGCGGCT 1 chr3L:4206035-4206155 ( 90) AATCCGAT 1 chr3R:20597708-20597828 ( 51) AATCCGAT 1 chr3R:5074812-5074932 ( 88) AATCCGAT 1 chr3L:12685613-12685733 ( 51) AATCCGAT 1 chr3R:10687421-10687541 ( 55) AATCCGAT 1 chrX:2965406-2965526 ( 69) AATCCGAT 1 chr3L:20953935-20954055 ( 21) AATCCGAT 1 chr2R:7431298-7431418 ( 31) AATCCGAT 1 chr2R:20179862-20179982 ( 23) AATCCGAT 1 chr3L:15030785-15030905 ( 50) AAGCGGAT 1 chr2L:14441448-14441568 ( 52) AAGCGGAT 1 chr2L:19296904-19297024 ( 40) AAGCGGAT 1 chr3R:31482982-31483102 ( 107) AATCGGCT 1 chr2R:15837589-15837709 ( 55) AATCGGCT 1 chr2R:6510049-6510169 ( 68) AATCGGCT 1 chr3L:14343712-14343832 ( 75) AATCGGCT 1 chr2R:15355283-15355403 ( 37) AAGGCGCT 1 chr2L:8832172-8832292 ( 52) AATCGGAT 1 chr3L:14142666-14142786 ( 42) AATCGGAT 1 chr3L:4382713-4382833 ( 10) AAGGCGAT 1 chr3L:20952937-20953057 ( 33) AAGCAGCT 1 chr2R:7191679-7191799 ( 96) AAGCAGCT 1 chrX:17353046-17353166 ( 59) AAGCAGCT 1 chr3R:8884463-8884583 ( 10) AAGGCGAT 1 chr2R:20080129-20080249 ( 45) AAGGCGAT 1 chr3R:13308211-13308331 ( 69) AAGCAGCT 1 chr2R:18310502-18310622 ( 42) AAGCAGCT 1 chrX:17236626-17236746 ( 105) AAGGCGAT 1 chr2L:19232128-19232248 ( 8) AAGCAGAT 1 chr2L:18766850-18766970 ( 50) AATGCGCT 1 chr3R:24025436-24025556 ( 89) AATGCGCT 1 chr2L:8294188-8294308 ( 90) AATCAGCT 1 chrX:6620025-6620145 ( 73) AATGCGAT 1 chrX:18996810-18996930 ( 2) AATCAGCT 1 chr3R:21501225-21501345 ( 97) AAGGGGAT 1 chr3R:8254512-8254632 ( 69) AAGGGGAT 1 chr2R:17443350-17443470 ( 88) AAGGGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 7.1e-031 187 -1275 -1275 -1275 187 -1275 -1275 -1275 -1275 -1275 151 43 -1275 188 -45 -1275 -124 145 26 -1275 -1275 -1275 220 -1275 85 115 -1275 -1275 -1275 -1275 -1275 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 7.1e-031 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.623188 0.376812 0.000000 0.840580 0.159420 0.000000 0.115942 0.623188 0.260870 0.000000 0.000000 0.000000 1.000000 0.000000 0.492754 0.507246 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAKCCGMT MEME-1 regular expression -------------------------------------------------------------------------------- AA[GT]C[CG]G[CA]T -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCRG MEME-2 width = 8 sites = 14 llr = 140 E-value = 9.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::3::4: pos.-specific C ::a::91: probability G aa:7a15a matrix T :::::::: bits 2.2 *** * * 2.0 *** * * 1.8 *** * * 1.5 *** ** * Relative 1.3 ****** * Entropy 1.1 ****** * (14.5 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7975674-7975794 55 5.63e-06 CGAAGTGGTG GGCGGCGG AGGGAGGCGA chr3R:22055856-22055976 94 5.63e-06 TTGTTGCCCG GGCGGCGG TGAGCATGTG chr3R:31438947-31439067 107 1.27e-05 AGACGCCGCC GGCGGCAG CTGTTG chr3R:24621216-24621336 105 1.27e-05 tgttattgtt gGCGGCAG TTTATTCA chr3L:20953935-20954055 112 1.27e-05 TCGATCGTAT GGCGGCAG A chr3R:17705266-17705386 70 1.27e-05 ACAATGGACG GGCGGCAG GGACTTCCCC chr3R:23432600-23432720 72 1.27e-05 CAGGACGGTT GGCGGCAG CATAAAGAGT chr3R:5031145-5031265 78 1.97e-05 TGATTGATGT GGCAGCGG CTGCTGGCTG chr3L:13137803-13137923 63 1.97e-05 TTGTAAGCCC GGCAGCGG AATCCACCAC chr3R:13308211-13308331 109 1.97e-05 AACTGATGAT GGCAGCGG AGAC chrX:3050393-3050513 41 2.86e-05 AAGAAAAAAG GGCAGCAG ACAAGACCCG chrX:3834718-3834838 22 3.39e-05 AGAGGGTTTC GGCGGGGG GGGCTGGAGA chr3R:4867055-4867175 90 3.39e-05 TTTATTTGCG GGCGGGGG TGAGCGGGGC chr3R:20597708-20597828 105 3.98e-05 GGTGCAGTCG GGCGGCCG TGGCAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7975674-7975794 5.6e-06 54_[+2]_58 chr3R:22055856-22055976 5.6e-06 93_[+2]_19 chr3R:31438947-31439067 1.3e-05 106_[+2]_6 chr3R:24621216-24621336 1.3e-05 104_[+2]_8 chr3L:20953935-20954055 1.3e-05 111_[+2]_1 chr3R:17705266-17705386 1.3e-05 69_[+2]_43 chr3R:23432600-23432720 1.3e-05 71_[+2]_41 chr3R:5031145-5031265 2e-05 77_[+2]_35 chr3L:13137803-13137923 2e-05 62_[+2]_50 chr3R:13308211-13308331 2e-05 108_[+2]_4 chrX:3050393-3050513 2.9e-05 40_[+2]_72 chrX:3834718-3834838 3.4e-05 21_[+2]_91 chr3R:4867055-4867175 3.4e-05 89_[+2]_23 chr3R:20597708-20597828 4e-05 104_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCRG width=8 seqs=14 chrX:7975674-7975794 ( 55) GGCGGCGG 1 chr3R:22055856-22055976 ( 94) GGCGGCGG 1 chr3R:31438947-31439067 ( 107) GGCGGCAG 1 chr3R:24621216-24621336 ( 105) GGCGGCAG 1 chr3L:20953935-20954055 ( 112) GGCGGCAG 1 chr3R:17705266-17705386 ( 70) GGCGGCAG 1 chr3R:23432600-23432720 ( 72) GGCGGCAG 1 chr3R:5031145-5031265 ( 78) GGCAGCGG 1 chr3L:13137803-13137923 ( 63) GGCAGCGG 1 chr3R:13308211-13308331 ( 109) GGCAGCGG 1 chrX:3050393-3050513 ( 41) GGCAGCAG 1 chrX:3834718-3834838 ( 22) GGCGGGGG 1 chr3R:4867055-4867175 ( 90) GGCGGGGG 1 chr3R:20597708-20597828 ( 105) GGCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 9.5e+002 -1045 -1045 220 -1045 -1045 -1045 220 -1045 -1045 213 -1045 -1045 6 -1045 171 -1045 -1045 -1045 220 -1045 -1045 191 -61 -1045 65 -168 120 -1045 -1045 -1045 220 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.428571 0.071429 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRG MEME-2 regular expression -------------------------------------------------------------------------------- GGC[GA]GC[GA]G -------------------------------------------------------------------------------- Time 13.83 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTAAGCC MEME-3 width = 8 sites = 24 llr = 226 E-value = 8.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:aa::: pos.-specific C 5:::::aa probability G :2:::a:: matrix T 56a::::: bits 2.2 *** 2.0 ***** 1.8 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 * ****** (13.6 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTAAGCC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16796567-16796687 44 1.53e-05 GCTCGCAAAG CTTAAGCC GGCTTACCAC chr2R:11549196-11549316 87 1.53e-05 GCCACGACTT CTTAAGCC TTTTATGGCC chr2L:19829390-19829510 31 1.53e-05 TTTCGCATAT CTTAAGCC GGTAATCATT chr3R:24206486-24206606 34 1.53e-05 ATCAAGCCGA CTTAAGCC AATTAAACGA chr2L:6711106-6711226 87 1.53e-05 ACGTGGAGGG CTTAAGCC ATAAAACTAG chr2L:18767954-18768074 65 1.53e-05 TTGGAGACGC CTTAAGCC CGCTGCTTAA chr3R:21501225-21501345 47 3.40e-05 TGCGTTGATG TTTAAGCC CCATTGTCCG chrX:17678620-17678740 96 3.40e-05 TTTTTTTTTT TTTAAGCC CGATTGGACG chr3R:22143591-22143711 100 3.40e-05 TGAAGGCGAC TTTAAGCC CCTTTCGACT chr3R:22265583-22265703 85 3.40e-05 CAAAACAACA TTTAAGCC TTTTCGTGAT chr2L:11392226-11392346 47 3.40e-05 TTGGGCCGGC TTTAAGCC GTTTCGCTCG chr2R:11728225-11728345 27 3.40e-05 GAAGAAACAT TTTAAGCC ATGGCTTAAG chr3L:20918221-20918341 36 3.40e-05 CTCTGTCCGT TTTAAGCC GCTTAAAACA chr2R:14924639-14924759 32 3.40e-05 TCCCAACCAC TTTAAGCC TATTAGGAGG chr3R:27186980-27187100 46 4.89e-05 GTTTGGCAGT CATAAGCC CGCATTATGC chr2R:18263674-18263794 95 4.89e-05 AAACTTTACA CATAAGCC GCATGACAAT chr3R:29818438-29818558 33 4.89e-05 AAACACCGAA CATAAGCC CACACAAATC chr3R:13308211-13308331 48 4.89e-05 AAGCCGGGTC CATAAGCC CGGGTTTGTT chr2R:17612306-17612426 43 4.89e-05 ACAGAACTAT CATAAGCC GGGTCTTCAG chr2R:15922831-15922951 110 6.08e-05 AGGCGCGATC CGTAAGCC TAA chr2R:11536922-11537042 87 6.08e-05 AAGTGCTGTT CGTAAGCC CAATAAAATT chr3R:24621216-24621336 37 7.91e-05 TAGCTTGAGT TATAAGCC TCTTACTAAT chr3L:15030785-15030905 36 9.36e-05 TTTGCATCAC TGTAAGCC ATGAATAAGC chr3L:13137803-13137923 54 9.36e-05 ATTAATCCTT TGTAAGCC CGGCAGCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16796567-16796687 1.5e-05 43_[+3]_69 chr2R:11549196-11549316 1.5e-05 86_[+3]_26 chr2L:19829390-19829510 1.5e-05 30_[+3]_82 chr3R:24206486-24206606 1.5e-05 33_[+3]_79 chr2L:6711106-6711226 1.5e-05 86_[+3]_26 chr2L:18767954-18768074 1.5e-05 64_[+3]_48 chr3R:21501225-21501345 3.4e-05 46_[+3]_66 chrX:17678620-17678740 3.4e-05 95_[+3]_17 chr3R:22143591-22143711 3.4e-05 99_[+3]_13 chr3R:22265583-22265703 3.4e-05 84_[+3]_28 chr2L:11392226-11392346 3.4e-05 46_[+3]_66 chr2R:11728225-11728345 3.4e-05 26_[+3]_86 chr3L:20918221-20918341 3.4e-05 35_[+3]_77 chr2R:14924639-14924759 3.4e-05 31_[+3]_81 chr3R:27186980-27187100 4.9e-05 45_[+3]_67 chr2R:18263674-18263794 4.9e-05 94_[+3]_18 chr3R:29818438-29818558 4.9e-05 32_[+3]_80 chr3R:13308211-13308331 4.9e-05 47_[+3]_65 chr2R:17612306-17612426 4.9e-05 42_[+3]_70 chr2R:15922831-15922951 6.1e-05 109_[+3]_3 chr2R:11536922-11537042 6.1e-05 86_[+3]_26 chr3R:24621216-24621336 7.9e-05 36_[+3]_76 chr3L:15030785-15030905 9.4e-05 35_[+3]_77 chr3L:13137803-13137923 9.4e-05 53_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTAAGCC width=8 seqs=24 chr2R:16796567-16796687 ( 44) CTTAAGCC 1 chr2R:11549196-11549316 ( 87) CTTAAGCC 1 chr2L:19829390-19829510 ( 31) CTTAAGCC 1 chr3R:24206486-24206606 ( 34) CTTAAGCC 1 chr2L:6711106-6711226 ( 87) CTTAAGCC 1 chr2L:18767954-18768074 ( 65) CTTAAGCC 1 chr3R:21501225-21501345 ( 47) TTTAAGCC 1 chrX:17678620-17678740 ( 96) TTTAAGCC 1 chr3R:22143591-22143711 ( 100) TTTAAGCC 1 chr3R:22265583-22265703 ( 85) TTTAAGCC 1 chr2L:11392226-11392346 ( 47) TTTAAGCC 1 chr2R:11728225-11728345 ( 27) TTTAAGCC 1 chr3L:20918221-20918341 ( 36) TTTAAGCC 1 chr2R:14924639-14924759 ( 32) TTTAAGCC 1 chr3R:27186980-27187100 ( 46) CATAAGCC 1 chr2R:18263674-18263794 ( 95) CATAAGCC 1 chr3R:29818438-29818558 ( 33) CATAAGCC 1 chr3R:13308211-13308331 ( 48) CATAAGCC 1 chr2R:17612306-17612426 ( 43) CATAAGCC 1 chr2R:15922831-15922951 ( 110) CGTAAGCC 1 chr2R:11536922-11537042 ( 87) CGTAAGCC 1 chr3R:24621216-24621336 ( 37) TATAAGCC 1 chr3L:15030785-15030905 ( 36) TGTAAGCC 1 chr3L:13137803-13137923 ( 54) TGTAAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 8.4e-001 -1123 124 -1123 71 -13 -1123 -39 106 -1123 -1123 -1123 184 187 -1123 -1123 -1123 187 -1123 -1123 -1123 -1123 -1123 220 -1123 -1123 213 -1123 -1123 -1123 213 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.4e-001 0.000000 0.541667 0.000000 0.458333 0.250000 0.000000 0.166667 0.583333 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTAAGCC MEME-3 regular expression -------------------------------------------------------------------------------- [CT][TA]TAAGCC -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATGCAA MEME-4 width = 8 sites = 15 llr = 153 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::2aa pos.-specific C :::::8:: probability G ::::a::: matrix T aa:a:::: bits 2.2 * 2.0 * * ** 1.8 ***** ** 1.5 ***** ** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTATGCAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10749712-10749832 89 2.23e-05 CAGCGTTTGT TTATGCAA ATGCTTTATG chr3L:5970324-5970444 87 2.23e-05 GAGTTTTAAT TTATGCAA GGCAAGTCCG chr3L:8363422-8363542 52 2.23e-05 ACTTTACTGC TTATGCAA ATTTATGCTA chr3L:5578846-5578966 104 2.23e-05 TTGTTAATGT TTATGCAA CATGAAAGA chr3L:6554512-6554632 52 2.23e-05 AAGGCGGTAC TTATGCAA ATGGAATTCA chr2R:14348212-14348332 56 2.23e-05 AGACTGTGGC TTATGCAA ATGCTAACTG chr3R:17016362-17016482 29 2.23e-05 TTTAAGCTCG TTATGCAA ACGCAGCCAA chr3R:16846196-16846316 27 2.23e-05 GATTAAATCA TTATGCAA TTAGGTTTTG chr3L:9569744-9569864 76 2.23e-05 CAAAGCCGGC TTATGCAA ATGCAGACCC chr2L:18515758-18515878 36 2.23e-05 TAATGTGAGA TTATGCAA ATCAAAATGC chr2L:680011-680131 104 2.23e-05 TAATAGCAGA TTATGCAA ATCAGTTGG chrX:18996810-18996930 74 2.23e-05 TTTACCTGGC TTATGCAA CACACTCGTC chr2L:17541270-17541390 2 4.89e-05 A TTATGAAA TGCAAAACTA chr2L:10607948-10608068 92 4.89e-05 GAATGTGGAA TTATGAAA AACACACATA chr2R:21859969-21860089 4 4.89e-05 TTG TTATGAAA ATGCTTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10749712-10749832 2.2e-05 88_[+4]_24 chr3L:5970324-5970444 2.2e-05 86_[+4]_26 chr3L:8363422-8363542 2.2e-05 51_[+4]_61 chr3L:5578846-5578966 2.2e-05 103_[+4]_9 chr3L:6554512-6554632 2.2e-05 51_[+4]_61 chr2R:14348212-14348332 2.2e-05 55_[+4]_57 chr3R:17016362-17016482 2.2e-05 28_[+4]_84 chr3R:16846196-16846316 2.2e-05 26_[+4]_86 chr3L:9569744-9569864 2.2e-05 75_[+4]_37 chr2L:18515758-18515878 2.2e-05 35_[+4]_77 chr2L:680011-680131 2.2e-05 103_[+4]_9 chrX:18996810-18996930 2.2e-05 73_[+4]_39 chr2L:17541270-17541390 4.9e-05 1_[+4]_111 chr2L:10607948-10608068 4.9e-05 91_[+4]_21 chr2R:21859969-21860089 4.9e-05 3_[+4]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATGCAA width=8 seqs=15 chr2L:10749712-10749832 ( 89) TTATGCAA 1 chr3L:5970324-5970444 ( 87) TTATGCAA 1 chr3L:8363422-8363542 ( 52) TTATGCAA 1 chr3L:5578846-5578966 ( 104) TTATGCAA 1 chr3L:6554512-6554632 ( 52) TTATGCAA 1 chr2R:14348212-14348332 ( 56) TTATGCAA 1 chr3R:17016362-17016482 ( 29) TTATGCAA 1 chr3R:16846196-16846316 ( 27) TTATGCAA 1 chr3L:9569744-9569864 ( 76) TTATGCAA 1 chr2L:18515758-18515878 ( 36) TTATGCAA 1 chr2L:680011-680131 ( 104) TTATGCAA 1 chrX:18996810-18996930 ( 74) TTATGCAA 1 chr2L:17541270-17541390 ( 2) TTATGAAA 1 chr2L:10607948-10608068 ( 92) TTATGAAA 1 chr2R:21859969-21860089 ( 4) TTATGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 1.2e+001 -1055 -1055 -1055 184 -1055 -1055 -1055 184 187 -1055 -1055 -1055 -1055 -1055 -1055 184 -1055 -1055 220 -1055 -45 181 -1055 -1055 187 -1055 -1055 -1055 187 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.2e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATGCAA MEME-4 regular expression -------------------------------------------------------------------------------- TTATG[CA]AA -------------------------------------------------------------------------------- Time 26.25 secs. ******************************************************************************** ******************************************************************************** MOTIF BSRGMTTA MEME-5 width = 8 sites = 53 llr = 422 E-value = 3.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4:5::a pos.-specific C 35::5::: probability G 356a:::: matrix T 4::::aa: bits 2.2 * 2.0 * * 1.8 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ******* (11.5 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGGCTTA consensus GGA A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20804881-20805001 26 1.16e-05 TCATCGCCTG GCGGCTTA TATAAATTAT chrX:11534030-11534150 2 1.16e-05 A GCGGCTTa aaaaaaacaa chr3R:19052614-19052734 91 1.16e-05 CTGCCCATTA GCGGCTTA CATTAAGAGG chrX:18996810-18996930 100 1.16e-05 TCGTTTGATT GCGGCTTA GTAGCCGTTG chr3L:5970324-5970444 13 2.66e-05 GTACCTTTTA TCGGCTTA AATCAAACAC chr2L:7382444-7382564 110 2.66e-05 ATGCAACCAA TCGGCTTA TAG chr2R:14347531-14347651 28 2.66e-05 AACGCCCCGC TCGGCTTA ATAATGCCAA chr2R:11731063-11731183 113 2.66e-05 TTGGGTCGAG TCGGCTTA chr2R:17612306-17612426 21 2.66e-05 AACCCAAAAG TCGGCTTA AGTGACAGAA chr3L:17935273-17935393 93 4.98e-05 TGGCCGTTGA GGGGCTTA CGGTTGTCTT chr2R:20045020-20045140 59 7.79e-05 CCAAAATGTC TGGGCTTA AATCATAAAA chr3R:20597708-20597828 67 7.79e-05 ATCACAAAAA GCGGATTA TAACGCACAG chr3L:20565835-20565955 21 7.79e-05 GTTTGGCTTT TGGGCTTA GGCCATCATT chr3L:21863515-21863635 15 1.07e-04 CTGGGTGACA CGGGCTTA GCCTTATTAA chr3L:5986053-5986173 55 1.07e-04 CAGCTGCTCT CGGGCTTA ACTTGGCTGT chr3R:22143591-22143711 16 1.07e-04 TAATCCCGAG CGGGCTTA ATGTCATTAT chrX:8643530-8643650 12 1.07e-04 AAGTCGCATT CGGGCTTA TCTTGCGGTT chr2L:19867457-19867577 62 1.07e-04 TTTGTTAGCG CGGGCTTA TTAAATTTCG chr3R:22438565-22438685 77 1.35e-04 CTTGTCAGTT CCGGATTA GACAAAATTG chr3L:11377346-11377466 48 1.35e-04 TTACCAGGGC GGGGATTA CGGATTACAG chr2R:10546188-10546308 108 1.35e-04 GATAAACATA GGGGATTA GCTTG chrX:17724343-17724463 20 1.35e-04 ATAATCGTAT CCGGATTA GCCGTCTTTT chr3L:13099276-13099396 86 1.35e-04 CTGGTTAATG GGGGATTA GTGGGGCCTA chr3L:22403779-22403899 42 1.35e-04 GGTTGATTTT GGGGATTA GCCGATAAGC chr2L:392683-392803 61 1.67e-04 TGCTAATCGC TGGGATTA TAATTAATTA chr2R:16219047-16219167 55 1.67e-04 AGTTGCAGCT GCAGCTTA TGATGGAAGT chr3L:15683797-15683917 32 1.67e-04 GCGTATAAGA TGGGATTA CTGGTGTGGA chr3L:3353410-3353530 34 1.67e-04 CTTTCCTCGC TGGGATTA TCGTGCGCGT chr3R:22146700-22146820 59 1.67e-04 ACAATTGACA TGGGATTA GTTTCGGGTT chrX:17269446-17269566 62 1.67e-04 CCACATTTGA TGGGATTA TAGTCGGCTG chr3L:22193045-22193165 67 1.67e-04 GGCTGACGTA GCAGCTTA GCATGAAAAA chr3L:8075030-8075150 82 1.99e-04 GTGTCGCGAT CGGGATTA GCCGCCATAA chr3R:6252374-6252494 66 1.99e-04 AGCGATTGTC CGGGATTA TGCCTGCTTT chr2L:14181956-14182076 33 1.99e-04 CAAGCGCCAG TCAGCTTA TCAGGTTTGG chr3R:16846196-16846316 14 1.99e-04 AGCCATTGGC CGGGATTA AATCATTATG chr3L:715198-715318 82 1.99e-04 TTTCTGCATG TCAGCTTA GCTGTCAAAA chr3L:12711576-12711696 81 1.99e-04 ATTTTGGTTG TCAGCTTA AATCAATCGT chr2R:24750736-24750856 29 1.99e-04 CGGAACCCTT TCAGCTTA GCGCCACGCC chr3R:17705266-17705386 48 2.28e-04 TCGAAATCGA CCAGCTTA AATAACAATG chr2R:14924639-14924759 90 2.28e-04 ATCTGCAGAG CCAGCTTA TAAAAGATAC chrX:8667209-8667329 48 2.28e-04 CTAATTTGAC CCAGCTTA TCCAAGGCGT chr3R:8885091-8885211 21 2.28e-04 ATTTTTATAC CCAGCTTA ACATAAAATT chr2R:11514348-11514468 34 2.64e-04 ATCATTGTCC GCAGATTA ATTTCCACTG chrX:18973334-18973454 96 2.64e-04 CCACTGAGTA GCAGATTA GTAGCGCTTA chr2L:14404197-14404317 62 2.64e-04 TTAATTTTCA GCAGATTA CCAGAGCATT chr3L:21260412-21260532 75 2.64e-04 GAAAAGAGTT TGAGCTTA GGCCAGCAGC chr3R:14001325-14001445 80 2.64e-04 acacacacac gcaGATTA GTTCGGGTTT chr2R:7288638-7288758 64 3.00e-04 GATTAAATTT TCAGATTA GCTGGTTCCA chr2L:14302066-14302186 38 3.00e-04 GTAATAACCG TCAGATTA GTTTTAATAA chr2L:1465231-1465351 63 3.00e-04 TGTTTAACGT TCAGATTA ACATGGTCTC chr3R:13308211-13308331 78 3.35e-04 TAAGCAGCTC GGAGATTA TTAAAACAGA chr2R:7189610-7189730 85 3.56e-04 AAGCCAGGCG TGAGATTA TTATCCGACC chr3L:20952937-20953057 42 3.74e-04 TAAGCAGCTC CGAGATTA ATGGTTCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20804881-20805001 1.2e-05 25_[+5]_87 chrX:11534030-11534150 1.2e-05 1_[+5]_111 chr3R:19052614-19052734 1.2e-05 90_[+5]_22 chrX:18996810-18996930 1.2e-05 99_[+5]_13 chr3L:5970324-5970444 2.7e-05 12_[+5]_100 chr2L:7382444-7382564 2.7e-05 109_[+5]_3 chr2R:14347531-14347651 2.7e-05 27_[+5]_85 chr2R:11731063-11731183 2.7e-05 112_[+5] chr2R:17612306-17612426 2.7e-05 20_[+5]_92 chr3L:17935273-17935393 5e-05 92_[+5]_20 chr2R:20045020-20045140 7.8e-05 58_[+5]_54 chr3R:20597708-20597828 7.8e-05 66_[+5]_46 chr3L:20565835-20565955 7.8e-05 20_[+5]_92 chr3L:21863515-21863635 0.00011 14_[+5]_98 chr3L:5986053-5986173 0.00011 54_[+5]_58 chr3R:22143591-22143711 0.00011 15_[+5]_97 chrX:8643530-8643650 0.00011 11_[+5]_101 chr2L:19867457-19867577 0.00011 61_[+5]_51 chr3R:22438565-22438685 0.00014 76_[+5]_36 chr3L:11377346-11377466 0.00014 47_[+5]_65 chr2R:10546188-10546308 0.00014 107_[+5]_5 chrX:17724343-17724463 0.00014 19_[+5]_93 chr3L:13099276-13099396 0.00014 85_[+5]_27 chr3L:22403779-22403899 0.00014 41_[+5]_71 chr2L:392683-392803 0.00017 60_[+5]_52 chr2R:16219047-16219167 0.00017 54_[+5]_58 chr3L:15683797-15683917 0.00017 31_[+5]_81 chr3L:3353410-3353530 0.00017 33_[+5]_79 chr3R:22146700-22146820 0.00017 58_[+5]_54 chrX:17269446-17269566 0.00017 61_[+5]_51 chr3L:22193045-22193165 0.00017 66_[+5]_46 chr3L:8075030-8075150 0.0002 81_[+5]_31 chr3R:6252374-6252494 0.0002 65_[+5]_47 chr2L:14181956-14182076 0.0002 32_[+5]_80 chr3R:16846196-16846316 0.0002 13_[+5]_99 chr3L:715198-715318 0.0002 81_[+5]_31 chr3L:12711576-12711696 0.0002 80_[+5]_32 chr2R:24750736-24750856 0.0002 28_[+5]_84 chr3R:17705266-17705386 0.00023 47_[+5]_65 chr2R:14924639-14924759 0.00023 89_[+5]_23 chrX:8667209-8667329 0.00023 47_[+5]_65 chr3R:8885091-8885211 0.00023 20_[+5]_92 chr2R:11514348-11514468 0.00026 33_[+5]_79 chrX:18973334-18973454 0.00026 95_[+5]_17 chr2L:14404197-14404317 0.00026 61_[+5]_51 chr3L:21260412-21260532 0.00026 74_[+5]_38 chr3R:14001325-14001445 0.00026 79_[+5]_33 chr2R:7288638-7288758 0.0003 63_[+5]_49 chr2L:14302066-14302186 0.0003 37_[+5]_75 chr2L:1465231-1465351 0.0003 62_[+5]_50 chr3R:13308211-13308331 0.00034 77_[+5]_35 chr2R:7189610-7189730 0.00036 84_[+5]_28 chr3L:20952937-20953057 0.00037 41_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSRGMTTA width=8 seqs=53 chr2L:20804881-20805001 ( 26) GCGGCTTA 1 chrX:11534030-11534150 ( 2) GCGGCTTA 1 chr3R:19052614-19052734 ( 91) GCGGCTTA 1 chrX:18996810-18996930 ( 100) GCGGCTTA 1 chr3L:5970324-5970444 ( 13) TCGGCTTA 1 chr2L:7382444-7382564 ( 110) TCGGCTTA 1 chr2R:14347531-14347651 ( 28) TCGGCTTA 1 chr2R:11731063-11731183 ( 113) TCGGCTTA 1 chr2R:17612306-17612426 ( 21) TCGGCTTA 1 chr3L:17935273-17935393 ( 93) GGGGCTTA 1 chr2R:20045020-20045140 ( 59) TGGGCTTA 1 chr3R:20597708-20597828 ( 67) GCGGATTA 1 chr3L:20565835-20565955 ( 21) TGGGCTTA 1 chr3L:21863515-21863635 ( 15) CGGGCTTA 1 chr3L:5986053-5986173 ( 55) CGGGCTTA 1 chr3R:22143591-22143711 ( 16) CGGGCTTA 1 chrX:8643530-8643650 ( 12) CGGGCTTA 1 chr2L:19867457-19867577 ( 62) CGGGCTTA 1 chr3R:22438565-22438685 ( 77) CCGGATTA 1 chr3L:11377346-11377466 ( 48) GGGGATTA 1 chr2R:10546188-10546308 ( 108) GGGGATTA 1 chrX:17724343-17724463 ( 20) CCGGATTA 1 chr3L:13099276-13099396 ( 86) GGGGATTA 1 chr3L:22403779-22403899 ( 42) GGGGATTA 1 chr2L:392683-392803 ( 61) TGGGATTA 1 chr2R:16219047-16219167 ( 55) GCAGCTTA 1 chr3L:15683797-15683917 ( 32) TGGGATTA 1 chr3L:3353410-3353530 ( 34) TGGGATTA 1 chr3R:22146700-22146820 ( 59) TGGGATTA 1 chrX:17269446-17269566 ( 62) TGGGATTA 1 chr3L:22193045-22193165 ( 67) GCAGCTTA 1 chr3L:8075030-8075150 ( 82) CGGGATTA 1 chr3R:6252374-6252494 ( 66) CGGGATTA 1 chr2L:14181956-14182076 ( 33) TCAGCTTA 1 chr3R:16846196-16846316 ( 14) CGGGATTA 1 chr3L:715198-715318 ( 82) TCAGCTTA 1 chr3L:12711576-12711696 ( 81) TCAGCTTA 1 chr2R:24750736-24750856 ( 29) TCAGCTTA 1 chr3R:17705266-17705386 ( 48) CCAGCTTA 1 chr2R:14924639-14924759 ( 90) CCAGCTTA 1 chrX:8667209-8667329 ( 48) CCAGCTTA 1 chr3R:8885091-8885211 ( 21) CCAGCTTA 1 chr2R:11514348-11514468 ( 34) GCAGATTA 1 chrX:18973334-18973454 ( 96) GCAGATTA 1 chr2L:14404197-14404317 ( 62) GCAGATTA 1 chr3L:21260412-21260532 ( 75) TGAGCTTA 1 chr3R:14001325-14001445 ( 80) GCAGATTA 1 chr2R:7288638-7288758 ( 64) TCAGATTA 1 chr2L:14302066-14302186 ( 38) TCAGATTA 1 chr2L:1465231-1465351 ( 63) TCAGATTA 1 chr3R:13308211-13308331 ( 78) GGAGATTA 1 chr2R:7189610-7189730 ( 85) TGAGATTA 1 chr3L:20952937-20953057 ( 42) CGAGATTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2363 E= 3.7e-001 -1237 31 56 50 -1237 126 105 -1237 54 -1237 147 -1237 -1237 -1237 220 -1237 79 121 -1237 -1237 -1237 -1237 -1237 184 -1237 -1237 -1237 184 187 -1237 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 3.7e-001 0.000000 0.283019 0.320755 0.396226 0.000000 0.547170 0.452830 0.000000 0.396226 0.000000 0.603774 0.000000 0.000000 0.000000 1.000000 0.000000 0.471698 0.528302 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSRGMTTA MEME-5 regular expression -------------------------------------------------------------------------------- [TGC][CG][GA]G[CA]TTA -------------------------------------------------------------------------------- Time 32.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:15777978-15778098 2.20e-03 25_[+5(1.16e-05)]_87 chr3R:4867055-4867175 1.88e-03 89_[+2(3.39e-05)]_23 chrX:18996810-18996930 1.26e-04 73_[+4(2.23e-05)]_18_[+5(1.16e-05)]_\ 13 chr3L:14343712-14343832 4.04e-04 76_[+5(2.66e-05)]_36 chr3R:25012155-25012275 2.76e-03 12_[+1(1.19e-05)]_100 chr2R:22248795-22248915 7.71e-02 120 chr3L:22403779-22403899 2.86e-04 57_[+5(1.16e-05)]_25_[+1(5.27e-05)]_\ 22 chr2R:18198539-18198659 6.08e-01 120 chr3L:22437250-22437370 3.15e-01 120 chr3L:22193045-22193165 4.32e-02 120 chr3R:19510477-19510597 1.25e-02 106_[+1(2.61e-05)]_6 chr3R:8885091-8885211 8.26e-02 120 chr3R:19052614-19052734 1.60e-02 90_[+5(1.16e-05)]_22 chr2L:4295792-4295912 4.39e-04 38_[+5(1.16e-05)]_74 chr2L:7259639-7259759 1.13e-01 120 chr2L:19296904-19297024 1.34e-02 41_[+5(7.79e-05)]_71 chr2L:14441448-14441568 4.15e-03 51_[+1(8.45e-05)]_61 chr3L:13083571-13083691 8.93e-01 120 chr2L:680011-680131 7.95e-03 103_[+4(2.23e-05)]_9 chr3R:31339957-31340077 6.40e-03 10_[+1(4.14e-05)]_102 chr2R:15914958-15915078 5.79e-01 120 chrX:17236626-17236746 4.45e-02 120 chrX:8667209-8667329 6.23e-02 120 chr3L:11540075-11540195 6.32e-01 120 chrX:17269446-17269566 8.87e-02 120 chr3R:23432600-23432720 1.38e-02 71_[+2(1.27e-05)]_41 chr2R:14924639-14924759 8.23e-04 31_[+3(3.40e-05)]_81 chr2R:17443350-17443470 1.12e-01 120 chr3L:20918221-20918341 1.65e-04 38_[+1(1.19e-05)]_45_[+1(1.19e-05)]_\ 21 chr3L:20565835-20565955 1.79e-03 20_[+5(7.79e-05)]_70_[+4(4.89e-05)]_\ 14 chrX:8662398-8662518 9.54e-01 120 chr2R:21859969-21860089 2.20e-01 3_[+4(4.89e-05)]_109 chr2L:10149423-10149543 1.77e-01 2_[+1(2.61e-05)]_110 chr3L:14168031-14168151 2.66e-01 120 chr2L:1465231-1465351 4.13e-03 9_[+1(1.19e-05)]_103 chr2R:21366139-21366259 3.63e-03 77_[+1(1.19e-05)]_35 chrX:6752083-6752203 3.82e-01 120 chr2R:20079423-20079543 6.85e-01 120 chr2L:6549037-6549157 5.32e-02 120 chr3R:17705266-17705386 1.60e-05 18_[+5(1.16e-05)]_43_[+2(1.27e-05)]_\ 43 chr2R:24750736-24750856 4.89e-03 61_[+1(4.14e-05)]_51 chr3R:22146700-22146820 1.54e-02 120 chr2R:22135469-22135589 6.66e-01 120 chr2R:18310502-18310622 1.26e-02 120 chr2R:20179862-20179982 1.43e-01 22_[+1(7.10e-05)]_90 chrX:1213241-1213361 3.03e-01 120 chr2R:20029897-20030017 9.73e-01 120 chr2R:17612306-17612426 3.49e-03 20_[+5(2.66e-05)]_14_[+3(4.89e-05)]_\ 70 chr2R:11731063-11731183 8.37e-02 112_[+5(2.66e-05)] chr3R:15125900-15126020 1.50e-01 120 chr3L:2430267-2430387 1.38e-01 120 chr3R:13308211-13308331 8.48e-06 47_[+3(4.89e-05)]_53_[+2(1.97e-05)]_\ 4 chr2L:18515758-18515878 7.22e-03 35_[+4(2.23e-05)]_77 chr2R:18260616-18260736 1.75e-01 120 chrX:12458002-12458122 5.14e-01 120 chr4:821020-821140 2.29e-02 50_[+1(2.61e-05)]_62 chr2R:7431298-7431418 1.04e-02 30_[+1(7.10e-05)]_82 chr2R:11728225-11728345 7.88e-02 26_[+3(3.40e-05)]_86 chr2R:18218216-18218336 7.01e-01 120 chr3R:19105413-19105533 5.11e-04 29_[+1(2.61e-05)]_83 chr2R:20077154-20077274 2.09e-02 27_[+1(4.14e-05)]_85 chr3L:13137803-13137923 4.44e-03 53_[+3(9.36e-05)]_1_[+2(1.97e-05)]_\ 50 chrX:8616908-8617028 9.74e-01 120 chr3L:20953935-20954055 2.27e-04 20_[+1(7.10e-05)]_83_[+2(1.27e-05)]_\ 1 chr3L:8155490-8155610 7.92e-01 120 chr2R:6510049-6510169 5.72e-03 69_[+5(2.66e-05)]_43 chr2R:24589179-24589299 1.65e-01 120 chr3R:8254512-8254632 3.83e-02 120 chr2R:9035022-9035142 2.08e-01 120 chr3R:22757290-22757410 4.26e-01 120 chr2R:20058768-20058888 4.41e-01 120 chr3L:12711576-12711696 2.66e-01 120 chr3L:7553169-7553289 1.10e-01 120 chr3L:13064485-13064605 2.97e-01 120 chr2R:20080129-20080249 9.63e-02 120 chr3R:8884463-8884583 1.76e-01 120 chr3L:715198-715318 6.54e-02 120 chr2R:20631752-20631872 2.15e-01 120 chr2R:15837589-15837709 1.13e-04 3_[+2(8.90e-05)]_45_[+5(2.66e-05)]_\ 56 chrX:17353046-17353166 1.08e-02 120 chr2R:21849645-21849765 1.00e+00 120 chr2L:6535217-6535337 4.11e-03 15_[+1(2.61e-05)]_97 chr3L:13099276-13099396 4.88e-02 120 chrX:8663934-8664054 6.55e-01 120 chr2R:22276709-22276829 2.43e-02 89_[+1(4.14e-05)]_23 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chr3L:2436864-2436984 6.50e-02 120 chr3R:5074812-5074932 8.42e-02 87_[+1(7.10e-05)]_25 chr2R:20920152-20920272 1.90e-01 120 chr2L:18767954-18768074 1.70e-02 64_[+3(1.53e-05)]_48 chr2L:14181956-14182076 1.42e-01 120 chr3R:26890629-26890749 9.93e-01 120 chr3R:17016362-17016482 3.33e-02 28_[+4(2.23e-05)]_84 chr3L:9550949-9551069 1.89e-01 120 chr3R:29818438-29818558 1.38e-03 32_[+3(4.89e-05)]_29_[+1(2.61e-05)]_\ 43 chr2R:7191679-7191799 2.17e-02 120 chr3L:21260412-21260532 1.35e-02 120 chr3R:20597708-20597828 1.69e-04 50_[+1(7.10e-05)]_8_[+5(7.79e-05)]_\ 30_[+2(3.98e-05)]_8 chr2L:10758444-10758564 1.44e-02 120 chr3L:4398777-4398897 7.33e-01 120 chr2R:19894205-19894325 5.14e-01 120 chrX:16643715-16643835 5.90e-02 120 chr2R:22246732-22246852 2.66e-01 120 chr3R:31482982-31483102 5.65e-04 108_[+5(2.66e-05)]_4 chr3R:14672632-14672752 5.53e-02 120 chr3L:5871091-5871211 8.48e-02 120 chr3R:24621216-24621336 5.27e-04 36_[+3(7.91e-05)]_60_[+2(1.27e-05)]_\ 8 chrX:5040272-5040392 4.89e-01 120 chr3R:8878289-8878409 8.63e-01 120 chr2L:6711106-6711226 1.84e-02 86_[+3(1.53e-05)]_26 chr2R:14348212-14348332 7.22e-04 55_[+4(2.23e-05)]_57 chr2L:11392226-11392346 1.08e-02 46_[+3(3.40e-05)]_66 chr3R:24206486-24206606 4.01e-04 12_[+2(6.91e-05)]_13_[+3(1.53e-05)]_\ 79 chr3R:19805049-19805169 4.30e-03 46_[+1(2.61e-05)]_66 chrX:3834718-3834838 1.01e-03 21_[+2(3.39e-05)]_20_[+1(5.27e-05)]_\ 63 chrX:6620025-6620145 3.59e-01 120 chr2L:19232128-19232248 4.29e-02 120 chr3R:13550517-13550637 1.53e-03 73_[+1(2.61e-05)]_39 chr3L:14142666-14142786 7.75e-02 120 chr3L:6554512-6554632 2.19e-02 51_[+4(2.23e-05)]_61 chr3R:8198476-8198596 1.27e-01 120 chr3R:6252374-6252494 5.93e-02 120 chr2L:14404197-14404317 9.91e-02 120 chr3R:10569953-10570073 1.43e-02 89_[+1(2.61e-05)]_23 chr2R:14347531-14347651 8.10e-02 27_[+5(2.66e-05)]_85 chr2L:8546299-8546419 2.24e-02 100_[+1(4.14e-05)]_12 chrX:1279438-1279558 4.64e-01 120 chr2R:13465084-13465204 4.80e-01 120 chr3R:4246708-4246828 5.61e-01 120 chr3R:17113486-17113606 3.20e-03 87_[+1(1.19e-05)]_25 chr3L:15683797-15683917 3.00e-01 120 chr3L:21647454-21647574 3.72e-01 120 chr2R:14974470-14974590 2.15e-01 120 chr2L:8294188-8294308 2.14e-03 96_[+3(3.40e-05)]_16 chrX:17724343-17724463 4.27e-02 120 chrX:11534030-11534150 6.56e-02 1_[+5(1.16e-05)]_111 chrX:18973334-18973454 2.63e-02 120 chr2R:14788772-14788892 7.70e-01 120 chr3R:24025436-24025556 1.71e-01 120 chr2L:8832172-8832292 1.37e-02 120 chr2L:19829390-19829510 1.08e-02 30_[+3(1.53e-05)]_82 chr3L:3669923-3670043 5.15e-02 64_[+1(2.61e-05)]_48 chrX:8643530-8643650 1.35e-01 120 chr2R:16219047-16219167 5.03e-02 120 chr2L:7705103-7705223 5.10e-01 120 chr3L:20977429-20977549 4.53e-02 120 chr3R:22265583-22265703 3.31e-03 42_[+1(1.19e-05)]_34_[+3(3.40e-05)]_\ 28 chr2L:14578359-14578479 1.89e-02 120 chr3R:22055856-22055976 2.06e-02 93_[+2(5.63e-06)]_19 chr3L:7956835-7956955 1.47e-02 39_[+1(4.14e-05)]_73 chrX:10246831-10246951 1.18e-01 120 chr3R:22143591-22143711 4.45e-03 99_[+3(3.40e-05)]_13 chr3R:13927664-13927784 2.30e-01 120 chr3L:4395335-4395455 8.01e-02 120 chr3R:29198400-29198520 1.43e-01 120 chrX:8639598-8639718 9.53e-01 120 chr3L:20952937-20953057 1.03e-01 120 chr2L:387614-387734 1.12e-02 33_[+1(2.61e-05)]_79 chr3L:20982865-20982985 2.42e-01 120 chr2R:15888410-15888530 8.65e-01 120 chr3R:16334840-16334960 2.05e-01 120 chrX:17678620-17678740 1.82e-01 95_[+3(3.40e-05)]_17 chrX:7975674-7975794 6.29e-02 54_[+2(5.63e-06)]_58 chr3R:21501225-21501345 2.08e-02 46_[+3(3.40e-05)]_66 chr2L:3828414-3828534 9.88e-01 120 chr2R:11549196-11549316 1.65e-02 86_[+3(1.53e-05)]_26 chr3L:19221249-19221369 3.03e-01 120 chr2L:6504548-6504668 4.78e-01 120 chrX:17408191-17408311 8.41e-02 120 chr3R:13445575-13445695 5.25e-01 120 chr2R:16796567-16796687 5.58e-03 43_[+3(1.53e-05)]_69 chr2L:20804881-20805001 2.94e-02 25_[+5(1.16e-05)]_87 chr3R:9903517-9903637 2.08e-01 120 chr2R:20045020-20045140 1.94e-01 58_[+5(7.79e-05)]_54 chr3L:5986053-5986173 3.23e-02 120 chr3L:21863515-21863635 1.12e-01 120 chr3L:5578846-5578966 2.73e-03 103_[+4(2.23e-05)]_9 chr3L:9871673-9871793 4.37e-01 120 chr2L:5432902-5433022 5.31e-01 120 chrX:3050393-3050513 4.38e-02 40_[+2(2.86e-05)]_72 chr2R:15902749-15902869 6.55e-01 120 chr3R:25549868-25549988 4.93e-01 120 chr2L:7382444-7382564 9.50e-07 28_[+1(1.19e-05)]_73_[+5(2.66e-05)]_\ 3 chr2R:7189610-7189730 3.83e-02 120 chr3R:31438947-31439067 2.35e-02 106_[+2(1.27e-05)]_6 chr2L:10607948-10608068 1.01e-02 91_[+4(4.89e-05)]_21 chr3L:16868268-16868388 1.66e-01 120 chr2R:18263674-18263794 6.24e-02 94_[+3(4.89e-05)]_18 chr3L:3651619-3651739 2.91e-01 120 chr3L:15349116-15349236 9.35e-01 120 chr2L:14302066-14302186 1.79e-02 120 chr3L:8363422-8363542 6.74e-02 51_[+4(2.23e-05)]_61 chr2L:14311438-14311558 5.69e-01 120 chr2L:9417773-9417893 6.87e-01 120 chr2R:10546188-10546308 6.39e-02 120 chr2R:15922831-15922951 8.48e-02 109_[+3(6.08e-05)]_3 chrX:8660456-8660576 7.79e-01 120 chr2L:18766850-18766970 2.16e-02 120 chr3L:14168845-14168965 3.84e-01 120 chrX:8672038-8672158 4.69e-01 120 chr2L:18620289-18620409 2.68e-01 120 chr2R:22194148-22194268 2.85e-01 120 chr2L:392683-392803 4.02e-02 120 chr3L:8835558-8835678 1.16e-01 120 chr3L:11377346-11377466 1.13e-02 120 chr3L:15254533-15254653 2.19e-02 120 chr3R:28829035-28829155 8.27e-01 120 chr3R:5031145-5031265 5.21e-03 77_[+2(1.97e-05)]_35 chr3R:27186980-27187100 4.92e-04 45_[+3(4.89e-05)]_26_[+1(1.19e-05)]_\ 33 chr3L:10438800-10438920 7.59e-02 120 chr3L:17935273-17935393 8.36e-02 92_[+5(4.98e-05)]_20 chr2R:15355283-15355403 1.67e-03 42_[+3(1.53e-05)]_70 chr3L:4206035-4206155 2.29e-01 89_[+1(7.10e-05)]_23 chr3L:4382713-4382833 5.07e-02 120 chr3R:31542141-31542261 7.43e-01 120 chr3L:6365637-6365757 1.05e-01 120 chr2R:18586435-18586555 7.35e-01 120 chr3L:5970324-5970444 1.56e-03 12_[+5(2.66e-05)]_66_[+4(2.23e-05)]_\ 26 chr2L:19895002-19895122 4.58e-01 120 chr2R:10687447-10687567 3.30e-02 120 chr2R:11514348-11514468 2.42e-01 120 chr2R:7288638-7288758 1.50e-01 120 chr3L:8075030-8075150 1.09e-01 120 chr2R:11482596-11482716 1.14e-01 120 chr2L:17541270-17541390 3.74e-02 1_[+4(4.89e-05)]_111 chr2L:15001482-15001602 6.84e-02 120 chr3R:22438565-22438685 2.96e-01 120 chr2R:9036698-9036818 5.55e-01 120 chr2L:10749712-10749832 1.66e-02 88_[+4(2.23e-05)]_24 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************