******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/nom.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:8896340-8896460 1.0000 120 chr3L:14486726-14486846 1.0000 120 chr3R:23785041-23785161 1.0000 120 chr3L:7341350-7341470 1.0000 120 chrX:6282221-6282341 1.0000 120 chrX:15024860-15024980 1.0000 120 chrX:7100864-7100984 1.0000 120 chrX:15068620-15068740 1.0000 120 chr3R:19318547-19318667 1.0000 120 chr2R:11214028-11214148 1.0000 120 chr4:60745-60865 1.0000 120 chr3R:24935905-24936025 1.0000 120 chr2L:12524315-12524435 1.0000 120 chr3L:16752830-16752950 1.0000 120 chr2R:13955925-13956045 1.0000 120 chr2R:5708301-5708421 1.0000 120 chrX:3100030-3100150 1.0000 120 chr3R:5308254-5308374 1.0000 120 chr3L:2837283-2837403 1.0000 120 chr2L:3618283-3618403 1.0000 120 chr2R:24980669-24980789 1.0000 120 chrX:15070926-15071046 1.0000 120 chr3R:8007702-8007822 1.0000 120 chr2R:16706736-16706856 1.0000 120 chr2L:4374169-4374289 1.0000 120 chrX:11785162-11785282 1.0000 120 chrX:7980908-7981028 1.0000 120 chr3L:9863825-9863945 1.0000 120 chr2R:24553609-24553729 1.0000 120 chrX:13209546-13209666 1.0000 120 chr3L:11213796-11213916 1.0000 120 chr2R:23730962-23731082 1.0000 120 chrX:17352149-17352269 1.0000 120 chr3R:14651165-14651285 1.0000 120 chr3R:27925803-27925923 1.0000 120 chr3L:4545261-4545381 1.0000 120 chr2R:7472416-7472536 1.0000 120 chr2L:8418252-8418372 1.0000 120 chr2R:7764301-7764421 1.0000 120 chr3R:25596806-25596926 1.0000 120 chr3R:14705398-14705518 1.0000 120 chr2L:14665343-14665463 1.0000 120 chrX:8823021-8823141 1.0000 120 chr3L:2567334-2567454 1.0000 120 chr3R:8164989-8165109 1.0000 120 chr2L:19868077-19868197 1.0000 120 chr2R:19445675-19445795 1.0000 120 chr3L:22420947-22421067 1.0000 120 chrX:9577398-9577518 1.0000 120 chr2L:16590477-16590597 1.0000 120 chr3R:21152413-21152533 1.0000 120 chr3L:3664418-3664538 1.0000 120 chr2R:21618982-21619102 1.0000 120 chrX:15080068-15080188 1.0000 120 chr3L:16807661-16807781 1.0000 120 chrX:9344272-9344392 1.0000 120 chr2L:4885994-4886114 1.0000 120 chr2L:18943424-18943544 1.0000 120 chr3R:9381090-9381210 1.0000 120 chr3L:16803415-16803535 1.0000 120 chrX:4664244-4664364 1.0000 120 chr2R:9190874-9190994 1.0000 120 chrX:9077708-9077828 1.0000 120 chr2R:16077967-16078087 1.0000 120 chr2L:9945229-9945349 1.0000 120 chr2R:20938905-20939025 1.0000 120 chr3L:7184866-7184986 1.0000 120 chr2L:16488030-16488150 1.0000 120 chr2R:14515128-14515248 1.0000 120 chr4:519552-519672 1.0000 120 chrX:13116567-13116687 1.0000 120 chrX:15608888-15609008 1.0000 120 chr2R:21061452-21061572 1.0000 120 chr2R:24785644-24785764 1.0000 120 chr2R:18760650-18760770 1.0000 120 chr3R:21268365-21268485 1.0000 120 chr2L:7207800-7207920 1.0000 120 chrX:5892638-5892758 1.0000 120 chr3L:2568343-2568463 1.0000 120 chr3R:18146804-18146924 1.0000 120 chr3L:16209816-16209936 1.0000 120 chr2R:21136173-21136293 1.0000 120 chr3L:14059730-14059850 1.0000 120 chr3R:24004090-24004210 1.0000 120 chr2R:8952749-8952869 1.0000 120 chr2L:8155955-8156075 1.0000 120 chrX:3158758-3158878 1.0000 120 chrX:2592395-2592515 1.0000 120 chr3L:10386745-10386865 1.0000 120 chr3R:19317465-19317585 1.0000 120 chr3R:21948194-21948314 1.0000 120 chrX:17806468-17806588 1.0000 120 chr3L:18073741-18073861 1.0000 120 chrX:3151305-3151425 1.0000 120 chr3R:21319164-21319284 1.0000 120 chr3L:10534041-10534161 1.0000 120 chr3L:18889383-18889503 1.0000 120 chrX:9989362-9989482 1.0000 120 chr3L:12014434-12014554 1.0000 120 chr3R:24117059-24117179 1.0000 120 chr3L:1728447-1728567 1.0000 120 chr2R:22596926-22597046 1.0000 120 chr3R:10115114-10115234 1.0000 120 chr3R:22526782-22526902 1.0000 120 chr3R:15568055-15568175 1.0000 120 chrX:18866426-18866546 1.0000 120 chr3R:11865272-11865392 1.0000 120 chr2L:9707212-9707332 1.0000 120 chr2L:14177707-14177827 1.0000 120 chr3R:13524830-13524950 1.0000 120 chrX:17726114-17726234 1.0000 120 chrX:16906172-16906292 1.0000 120 chr2R:17682168-17682288 1.0000 120 chr2R:7427455-7427575 1.0000 120 chr2L:5284992-5285112 1.0000 120 chr2R:13962560-13962680 1.0000 120 chrX:17149772-17149892 1.0000 120 chr2R:16154076-16154196 1.0000 120 chrX:17694317-17694437 1.0000 120 chr3L:18001687-18001807 1.0000 120 chr3R:30289502-30289622 1.0000 120 chr3R:15825684-15825804 1.0000 120 chr3R:21653559-21653679 1.0000 120 chr3R:5622182-5622302 1.0000 120 chrX:11881820-11881940 1.0000 120 chr2R:12526925-12527045 1.0000 120 chr2L:8202668-8202788 1.0000 120 chrX:10773717-10773837 1.0000 120 chrX:7973433-7973553 1.0000 120 chr3R:8922696-8922816 1.0000 120 chrX:5724405-5724525 1.0000 120 chr3L:83129-83249 1.0000 120 chr3L:1381065-1381185 1.0000 120 chrX:19485198-19485318 1.0000 120 chr2R:18432725-18432845 1.0000 120 chr3R:14062640-14062760 1.0000 120 chr2R:16576611-16576731 1.0000 120 chr2L:7028590-7028710 1.0000 120 chr3R:11619543-11619663 1.0000 120 chr2L:20812608-20812728 1.0000 120 chr3R:23319026-23319146 1.0000 120 chr2R:23817896-23818016 1.0000 120 chr2R:16131909-16132029 1.0000 120 chr2L:16255655-16255775 1.0000 120 chr2R:24957394-24957514 1.0000 120 chr2R:11592418-11592538 1.0000 120 chr2L:8002337-8002457 1.0000 120 chr3R:18294591-18294711 1.0000 120 chr2R:24584558-24584678 1.0000 120 chr3R:18312908-18313028 1.0000 120 chr3R:26543570-26543690 1.0000 120 chr3R:4469012-4469132 1.0000 120 chr2L:13122709-13122829 1.0000 120 chrX:8159114-8159234 1.0000 120 chrX:4200765-4200885 1.0000 120 chrX:5768977-5769097 1.0000 120 chr3L:6447856-6447976 1.0000 120 chr3R:16334416-16334536 1.0000 120 chrX:3866265-3866385 1.0000 120 chr3R:11859270-11859390 1.0000 120 chr2R:10807322-10807442 1.0000 120 chr3L:5943649-5943769 1.0000 120 chr2L:19144290-19144410 1.0000 120 chrX:3162064-3162184 1.0000 120 chr2R:7370403-7370523 1.0000 120 chr3R:24595803-24595923 1.0000 120 chr3R:21938669-21938789 1.0000 120 chr3L:14481525-14481645 1.0000 120 chrX:10021924-10022044 1.0000 120 chrX:13406414-13406534 1.0000 120 chrX:17522727-17522847 1.0000 120 chr3R:27199033-27199153 1.0000 120 chr3R:19581977-19582097 1.0000 120 chr3L:4336711-4336831 1.0000 120 chr3L:20387941-20388061 1.0000 120 chr2R:15237752-15237872 1.0000 120 chr3L:8154684-8154804 1.0000 120 chr3R:12717060-12717180 1.0000 120 chr3L:3757669-3757789 1.0000 120 chr3R:20564168-20564288 1.0000 120 chr2R:19157637-19157757 1.0000 120 chr2L:135844-135964 1.0000 120 chr2L:168431-168551 1.0000 120 chrX:13114941-13115061 1.0000 120 chrX:12675369-12675489 1.0000 120 chr2R:9856724-9856844 1.0000 120 chr3L:16854372-16854492 1.0000 120 chrX:1613374-1613494 1.0000 120 chr2L:4375245-4375365 1.0000 120 chr2R:22078791-22078911 1.0000 120 chr3R:8980372-8980492 1.0000 120 chr3L:9462906-9463026 1.0000 120 chr3R:10592960-10593080 1.0000 120 chr3R:30005453-30005573 1.0000 120 chr2R:12926109-12926229 1.0000 120 chr3R:13716236-13716356 1.0000 120 chr2L:20878173-20878293 1.0000 120 chr2R:15530068-15530188 1.0000 120 chr2R:17266171-17266291 1.0000 120 chr3R:29460676-29460796 1.0000 120 chr3R:21824534-21824654 1.0000 120 chrX:17678383-17678503 1.0000 120 chr3R:26464532-26464652 1.0000 120 chr2R:24987639-24987759 1.0000 120 chr3R:21634816-21634936 1.0000 120 chr2L:16525292-16525412 1.0000 120 chr3L:1866525-1866645 1.0000 120 chr2R:11180836-11180956 1.0000 120 chr2L:10794156-10794276 1.0000 120 chr2L:16278237-16278357 1.0000 120 chr3L:11323658-11323778 1.0000 120 chr3R:21841884-21842004 1.0000 120 chr3R:13845695-13845815 1.0000 120 chrX:13879565-13879685 1.0000 120 chr2R:21496665-21496785 1.0000 120 chr3L:16927444-16927564 1.0000 120 chr2L:16511458-16511578 1.0000 120 chr2L:13035820-13035940 1.0000 120 chr2L:131479-131599 1.0000 120 chr2R:21065121-21065241 1.0000 120 chr3L:14450679-14450799 1.0000 120 chr2R:6159946-6160066 1.0000 120 chrX:21369719-21369839 1.0000 120 chr2L:5236560-5236680 1.0000 120 chrX:17488524-17488644 1.0000 120 chr3R:26004518-26004638 1.0000 120 chr3L:10814047-10814167 1.0000 120 chr2R:15350675-15350795 1.0000 120 chrX:13644765-13644885 1.0000 120 chr3L:22401684-22401804 1.0000 120 chr2L:5490204-5490324 1.0000 120 chr3L:270773-270893 1.0000 120 chr3L:19869938-19870058 1.0000 120 chrX:19359245-19359365 1.0000 120 chr3L:2490879-2490999 1.0000 120 chr3R:25529436-25529556 1.0000 120 chrX:13948904-13949024 1.0000 120 chr2L:2802673-2802793 1.0000 120 chr3L:5141415-5141535 1.0000 120 chr2L:5494247-5494367 1.0000 120 chr3L:2837488-2837608 1.0000 120 chr3L:2817988-2818108 1.0000 120 chr3L:3197316-3197436 1.0000 120 chrX:3140070-3140190 1.0000 120 chr2L:8420404-8420524 1.0000 120 chr2R:10603826-10603946 1.0000 120 chrX:13111835-13111955 1.0000 120 chr2R:13023887-13024007 1.0000 120 chr3R:25493954-25494074 1.0000 120 chr2R:6148133-6148253 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_nom/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/nom.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.217 G 0.221 T 0.282 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.217 G 0.221 T 0.282 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-1 width = 8 sites = 95 llr = 765 E-value = 3.4e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa9798aa pos.-specific C ::13:1:: probability G ::::11:: matrix T :::::::: bits 2.2 2.0 1.8 ** 1.5 *** ** Relative 1.3 *** * ** Entropy 1.1 *** * ** (11.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13023887-13024007 58 3.67e-05 AGCCaaaaat aaaaaaaa ataataaaaa chr3R:25529436-25529556 45 3.67e-05 GAAGAAACAA AAAAAAAA ATGATAAAAA chrX:19359245-19359365 89 3.67e-05 aagaaaaata aaaaaaaa aaaCTGAGGG chr3L:10814047-10814167 92 3.67e-05 aaaaaagtat aaaaaaaa agcaagagag chr3R:26004518-26004638 36 3.67e-05 AAGCCTGAAC AAAAAAAA ACTAAAAAAG chrX:17488524-17488644 20 3.67e-05 acgaaaagcg aaaaaaaa taaatgaaca chr2L:13035820-13035940 72 3.67e-05 ACAAACAACA AAAAAAAA CTTTtctctt chr2L:10794156-10794276 51 3.67e-05 acaaaaaaca aaaaaaaa agcaagacaa chr2R:17266171-17266291 61 3.67e-05 TTAAAAACAA AAAAAAAA GAGATCGTTG chrX:12675369-12675489 24 3.67e-05 agaaaaaaag aaaaaaaa aatatatata chr3L:3757669-3757789 110 3.67e-05 TGCGAAATTA AAAAAAAA AGA chr2R:15237752-15237872 42 3.67e-05 aaaaaatgga aaaaaaaa ggaaaataaC chr3R:27199033-27199153 25 3.67e-05 GATCCCTaaa aaaaaaaa aaataaaaca chrX:17522727-17522847 37 3.67e-05 aaaaaaaatt aaaaaaaa aaCATAACTC chr3R:24595803-24595923 68 3.67e-05 TGACCaaaaa aaaaaaaa agaaaaCAGT chr2R:7370403-7370523 113 3.67e-05 TTAaagagca aaaaaaaa chrX:3162064-3162184 32 3.67e-05 AAAATATAAA AAAAAAAA ATACCACTGC chrX:4200765-4200885 69 3.67e-05 aaaaaaaaag aaaaaaaa aaacaaGGAG chr2L:13122709-13122829 91 3.67e-05 TATATGAAAT AAAAAAAA AGAAAAAGAA chr2R:24584558-24584678 43 3.67e-05 GGCTGAAAGA AAAAAAAA CCATAAAAAC chr2L:8002337-8002457 61 3.67e-05 CCAAAGTGCG AAAAAAAA GAAAACGCTG chr2R:11592418-11592538 30 3.67e-05 AAACAAAACT AAAAAAAA CTACACGCCA chr3R:23319026-23319146 99 3.67e-05 TGAAAAAATA AAAAAAAA ATGGGGGGGG chr2R:16576611-16576731 104 3.67e-05 CTTTGCCACC aaaaaaaa aaaaaataa chr3R:8922696-8922816 20 3.67e-05 aataaaggaa aaaaaaaa caagaaacaa chr2R:12526925-12527045 61 3.67e-05 AAGCGCCACA AAAAAAAA ATATGGTACA chrX:17694317-17694437 97 3.67e-05 ataaatacaa aaaaaaaa aaaatacaaa chr2R:16154076-16154196 30 3.67e-05 GTCTGGCATG aaaaaaaa agtaataaac chr3R:13524830-13524950 32 3.67e-05 AAAAAAAACA AAAAAAAA GTGAAAGGAA chr2L:14177707-14177827 26 3.67e-05 GCCCGCAAAA AAAAAAAA GAAATTACAA chr2L:9707212-9707332 63 3.67e-05 TAAGCAAAAA AAAAAAAA AACAGCACTA chrX:17806468-17806588 95 3.67e-05 cgaaagcgca aaaaaaaa tacaacagaa chrX:15608888-15609008 15 3.67e-05 atatatacga aaaaaaaa aaatcaagga chrX:9077708-9077828 73 3.67e-05 GTGGTCCAAA AAAAAAAA CAAAAAACCG chrX:9344272-9344392 17 3.67e-05 ACCCAGCGAG aaaaaaaa atatataaaa chr3L:3664418-3664538 90 3.67e-05 gactgggacA AAAAAAAA AGTGGAAGCC chr3R:8164989-8165109 60 3.67e-05 aatacaaaaa aaaaaaaa aaaaCATACT chr2L:14665343-14665463 82 3.67e-05 taaaacagaa aaaaaaaa aCAGAGAGCC chr3R:25596806-25596926 30 3.67e-05 gaaccaaaaa aaaaaaaa agagtacaca chr2R:7764301-7764421 56 3.67e-05 CAGCAAATCG aaaaaaaa gcggcaaaca chrX:11785162-11785282 34 3.67e-05 aaaaaaaatg aaaaaaaa aTGCGAGTGT chr3L:2837283-2837403 20 3.67e-05 CGGGTAGCTA AAAAAAAA GGTGGACTTC chrX:3100030-3100150 22 3.67e-05 aaaaaaaaaa aaaaaaaa tacgcaacac chr3L:16752830-16752950 8 3.67e-05 CAACAAA AAAAAAAA CATACAAAAT chr3L:14486726-14486846 66 3.67e-05 acaaaacatc aaaaaaaa aaaaagaaaa chrX:3140070-3140190 112 6.53e-05 TGGTACAACA AAACAAAA A chr2L:5236560-5236680 95 6.53e-05 AACGAAAGCA AAACAAAA GCACCAGGAG chr2R:11180836-11180956 35 6.53e-05 gaaaaaaata aaacaaaa acaaaaacca chr2L:16525292-16525412 41 6.53e-05 AGCCAAGTAA AAACAAAA GCTTCCAGCG chr3R:21824534-21824654 3 6.53e-05 aa aaacaaaa acaccaaaaG chr3L:16854372-16854492 52 6.53e-05 ATaaaaaagg aaacaaaa aaataacaag chr2R:19157637-19157757 93 6.53e-05 AGGCTAGCaa aaacaaaa aaaggggcag chr3R:20564168-20564288 54 6.53e-05 GGAAGCCCaa aaacaaaa agaaaaaaag chr3R:11859270-11859390 38 6.53e-05 AAGCATCGGC aaacaaaa aaagaaacag chr3R:21948194-21948314 25 6.53e-05 aacaatacga aaacaaaa aagctcaaaa chr3L:10386745-10386865 43 6.53e-05 aaactaaata aaacaaaa caaaacaGAC chr2R:9190874-9190994 29 6.53e-05 AGCATTGCGC AAACAAAA CGCGAGCGGC chr3L:4545261-4545381 103 6.53e-05 GTGAAAAGGT AAACAAAA GGCGCTTAAT chr3R:14651165-14651285 66 6.53e-05 TTTAGCGTGC AAACAAAA AGAAAGAGAG chrX:13209546-13209666 64 6.53e-05 GAAAAAATAA AAACAAAA GGTGCAGATA chr2L:12524315-12524435 101 6.53e-05 aaacaacaac aaacaaaa caataaaacc chr2L:8420404-8420524 112 9.44e-05 CTGAGCCATg aaaaagaa g chr2L:16590477-16590597 63 9.44e-05 CAATGAAGGT AAAAAGAA TGAAGACTGA chr3L:6447856-6447976 17 1.23e-04 AAAAGTTGTA AAAAACAA ACACTCGTTG chrX:5724405-5724525 76 1.23e-04 GCAACGCAAC AAAAACAA GACGGAAACA chrX:9989362-9989482 21 1.23e-04 AACAAATACA AAAAACAA ACAGCAGGAG chr3L:9863825-9863945 97 1.23e-04 AGCCTGACAG AAAAACAA TGGCCAGTTG chrX:13879565-13879685 35 1.52e-04 AGCAAAAAGT AAAAGAAA GCAAAAGTTG chr2R:9856724-9856844 96 1.75e-04 TTATTCCACT AAACAGAA CAATCGGTCT chr3L:1728447-1728567 15 1.75e-04 CGCTTTATAT AAACAGAA TTATTCTACA chr2L:18943424-18943544 54 1.75e-04 GTTGGAAAGA AAACAGAA AAAGACCGAA chr3L:11213796-11213916 78 1.75e-04 ATTTAATGGC AAACAGAA Ttatatttat chrX:13948904-13949024 54 2.25e-04 AGAAGTCGAG AACAAAAA GAGGCGCGAG chrX:21369719-21369839 13 2.48e-04 AGTAGGTGGA AAACGAAA GCTAAGAACA chr3L:2490879-2490999 3 2.85e-04 AT AAATAAAA ACTCCAAGTA chr2L:16255655-16255775 11 2.85e-04 TATCACGGAT AAATAAAA AGAGAGAATG chr2R:20938905-20939025 54 2.85e-04 ATTACAAATG AAATAAAA CTGTGATGCA chr3L:14481525-14481645 113 3.14e-04 GCTaaataca caaaaaaa chr3L:270773-270893 19 3.36e-04 AAGTGGTTTT AACCAAAA TGCATACATT chr2R:21496665-21496785 94 3.81e-04 CGATCTTTAG CAACAAAA GCAAGAGCAA chr3L:9462906-9463026 3 3.81e-04 CG AAAAGGAA GTGAAAATAG chr3R:11619543-11619663 4 3.81e-04 AAA AAAAGGAA GAAGCAAAGA chrX:13644765-13644885 87 4.32e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chrX:15080068-15080188 5 4.55e-04 AAGG AACAAGAA TGCCGGGCAC chr2R:8952749-8952869 66 4.77e-04 cctGCCGCGA AACAACAA TCTCATTTGC chr2L:16511458-16511578 1 4.95e-04 . AAACGGAA CGAGTACGCG chr2L:8202668-8202788 21 5.93e-04 GCTGGAACCC AGAAAAAA GTCGCAACAA chr2R:22596926-22597046 12 5.93e-04 ATGGATCGTA AAACGCAA TCGAGACTAT chr2R:15530068-15530188 58 6.45e-04 ACAGGCACAT AAATACAA GCATGCAGCA chr2L:131479-131599 72 7.07e-04 GGCGTGTATT CAAAACAA TCAGCCAAAG chrX:5892638-5892758 79 7.07e-04 GTTTCATATG CAAAACAA CGCCAGCCAA chrX:3158758-3158878 95 8.17e-04 gttttGTGGT AACCGAAA AACCGGTCGA chr3L:16807661-16807781 101 8.17e-04 ACTATCCCCA AACCGAAA CCGAAGAGAG chr3R:30289502-30289622 111 9.03e-04 AAATTGTAGT ACAAAGAA AC chr3R:15568055-15568175 36 9.03e-04 GAATGCAGAT ACAAAGAA CACGCTTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13023887-13024007 3.7e-05 57_[+1]_55 chr3R:25529436-25529556 3.7e-05 44_[+1]_68 chrX:19359245-19359365 3.7e-05 88_[+1]_24 chr3L:10814047-10814167 3.7e-05 91_[+1]_21 chr3R:26004518-26004638 3.7e-05 35_[+1]_77 chrX:17488524-17488644 3.7e-05 19_[+1]_93 chr2L:13035820-13035940 3.7e-05 71_[+1]_41 chr2L:10794156-10794276 3.7e-05 50_[+1]_62 chr2R:17266171-17266291 3.7e-05 60_[+1]_52 chrX:12675369-12675489 3.7e-05 23_[+1]_89 chr3L:3757669-3757789 3.7e-05 109_[+1]_3 chr2R:15237752-15237872 3.7e-05 41_[+1]_71 chr3R:27199033-27199153 3.7e-05 24_[+1]_88 chrX:17522727-17522847 3.7e-05 36_[+1]_76 chr3R:24595803-24595923 3.7e-05 67_[+1]_45 chr2R:7370403-7370523 3.7e-05 112_[+1] chrX:3162064-3162184 3.7e-05 31_[+1]_81 chrX:4200765-4200885 3.7e-05 68_[+1]_44 chr2L:13122709-13122829 3.7e-05 90_[+1]_22 chr2R:24584558-24584678 3.7e-05 42_[+1]_70 chr2L:8002337-8002457 3.7e-05 60_[+1]_52 chr2R:11592418-11592538 3.7e-05 29_[+1]_83 chr3R:23319026-23319146 3.7e-05 98_[+1]_14 chr2R:16576611-16576731 3.7e-05 103_[+1]_9 chr3R:8922696-8922816 3.7e-05 19_[+1]_93 chr2R:12526925-12527045 3.7e-05 60_[+1]_52 chrX:17694317-17694437 3.7e-05 96_[+1]_16 chr2R:16154076-16154196 3.7e-05 29_[+1]_83 chr3R:13524830-13524950 3.7e-05 31_[+1]_81 chr2L:14177707-14177827 3.7e-05 25_[+1]_87 chr2L:9707212-9707332 3.7e-05 62_[+1]_50 chrX:17806468-17806588 3.7e-05 94_[+1]_18 chrX:15608888-15609008 3.7e-05 14_[+1]_98 chrX:9077708-9077828 3.7e-05 72_[+1]_40 chrX:9344272-9344392 3.7e-05 16_[+1]_96 chr3L:3664418-3664538 3.7e-05 89_[+1]_23 chr3R:8164989-8165109 3.7e-05 59_[+1]_53 chr2L:14665343-14665463 3.7e-05 81_[+1]_31 chr3R:25596806-25596926 3.7e-05 29_[+1]_83 chr2R:7764301-7764421 3.7e-05 55_[+1]_57 chrX:11785162-11785282 3.7e-05 33_[+1]_79 chr3L:2837283-2837403 3.7e-05 19_[+1]_93 chrX:3100030-3100150 3.7e-05 21_[+1]_91 chr3L:16752830-16752950 3.7e-05 7_[+1]_105 chr3L:14486726-14486846 3.7e-05 65_[+1]_47 chrX:3140070-3140190 6.5e-05 111_[+1]_1 chr2L:5236560-5236680 6.5e-05 94_[+1]_18 chr2R:11180836-11180956 6.5e-05 34_[+1]_78 chr2L:16525292-16525412 6.5e-05 40_[+1]_72 chr3R:21824534-21824654 6.5e-05 2_[+1]_110 chr3L:16854372-16854492 6.5e-05 51_[+1]_61 chr2R:19157637-19157757 6.5e-05 92_[+1]_20 chr3R:20564168-20564288 6.5e-05 53_[+1]_59 chr3R:11859270-11859390 6.5e-05 37_[+1]_75 chr3R:21948194-21948314 6.5e-05 24_[+1]_88 chr3L:10386745-10386865 6.5e-05 42_[+1]_70 chr2R:9190874-9190994 6.5e-05 28_[+1]_84 chr3L:4545261-4545381 6.5e-05 102_[+1]_10 chr3R:14651165-14651285 6.5e-05 65_[+1]_47 chrX:13209546-13209666 6.5e-05 63_[+1]_49 chr2L:12524315-12524435 6.5e-05 100_[+1]_12 chr2L:8420404-8420524 9.4e-05 111_[+1]_1 chr2L:16590477-16590597 9.4e-05 62_[+1]_50 chr3L:6447856-6447976 0.00012 16_[+1]_96 chrX:5724405-5724525 0.00012 75_[+1]_37 chrX:9989362-9989482 0.00012 20_[+1]_92 chr3L:9863825-9863945 0.00012 96_[+1]_16 chrX:13879565-13879685 0.00015 34_[+1]_78 chr2R:9856724-9856844 0.00017 95_[+1]_17 chr3L:1728447-1728567 0.00017 14_[+1]_98 chr2L:18943424-18943544 0.00017 53_[+1]_59 chr3L:11213796-11213916 0.00017 77_[+1]_35 chrX:13948904-13949024 0.00023 53_[+1]_59 chrX:21369719-21369839 0.00025 12_[+1]_100 chr3L:2490879-2490999 0.00029 2_[+1]_110 chr2L:16255655-16255775 0.00029 10_[+1]_102 chr2R:20938905-20939025 0.00029 53_[+1]_59 chr3L:14481525-14481645 0.00031 112_[+1] chr3L:270773-270893 0.00034 18_[+1]_94 chr2R:21496665-21496785 0.00038 93_[+1]_19 chr3L:9462906-9463026 0.00038 2_[+1]_110 chr3R:11619543-11619663 0.00038 3_[+1]_109 chrX:13644765-13644885 0.00043 86_[+1]_26 chrX:15080068-15080188 0.00045 4_[+1]_108 chr2R:8952749-8952869 0.00048 65_[+1]_47 chr2L:16511458-16511578 0.0005 [+1]_112 chr2L:8202668-8202788 0.00059 20_[+1]_92 chr2R:22596926-22597046 0.00059 11_[+1]_101 chr2R:15530068-15530188 0.00064 57_[+1]_55 chr2L:131479-131599 0.00071 71_[+1]_41 chrX:5892638-5892758 0.00071 78_[+1]_34 chrX:3158758-3158878 0.00082 94_[+1]_18 chr3L:16807661-16807781 0.00082 100_[+1]_12 chr3R:30289502-30289622 0.0009 110_[+1]_2 chr3R:15568055-15568175 0.0009 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=95 chr2R:13023887-13024007 ( 58) AAAAAAAA 1 chr3R:25529436-25529556 ( 45) AAAAAAAA 1 chrX:19359245-19359365 ( 89) AAAAAAAA 1 chr3L:10814047-10814167 ( 92) AAAAAAAA 1 chr3R:26004518-26004638 ( 36) AAAAAAAA 1 chrX:17488524-17488644 ( 20) AAAAAAAA 1 chr2L:13035820-13035940 ( 72) AAAAAAAA 1 chr2L:10794156-10794276 ( 51) AAAAAAAA 1 chr2R:17266171-17266291 ( 61) AAAAAAAA 1 chrX:12675369-12675489 ( 24) AAAAAAAA 1 chr3L:3757669-3757789 ( 110) AAAAAAAA 1 chr2R:15237752-15237872 ( 42) AAAAAAAA 1 chr3R:27199033-27199153 ( 25) AAAAAAAA 1 chrX:17522727-17522847 ( 37) AAAAAAAA 1 chr3R:24595803-24595923 ( 68) AAAAAAAA 1 chr2R:7370403-7370523 ( 113) AAAAAAAA 1 chrX:3162064-3162184 ( 32) AAAAAAAA 1 chrX:4200765-4200885 ( 69) AAAAAAAA 1 chr2L:13122709-13122829 ( 91) AAAAAAAA 1 chr2R:24584558-24584678 ( 43) AAAAAAAA 1 chr2L:8002337-8002457 ( 61) AAAAAAAA 1 chr2R:11592418-11592538 ( 30) AAAAAAAA 1 chr3R:23319026-23319146 ( 99) AAAAAAAA 1 chr2R:16576611-16576731 ( 104) AAAAAAAA 1 chr3R:8922696-8922816 ( 20) AAAAAAAA 1 chr2R:12526925-12527045 ( 61) AAAAAAAA 1 chrX:17694317-17694437 ( 97) AAAAAAAA 1 chr2R:16154076-16154196 ( 30) AAAAAAAA 1 chr3R:13524830-13524950 ( 32) AAAAAAAA 1 chr2L:14177707-14177827 ( 26) AAAAAAAA 1 chr2L:9707212-9707332 ( 63) AAAAAAAA 1 chrX:17806468-17806588 ( 95) AAAAAAAA 1 chrX:15608888-15609008 ( 15) AAAAAAAA 1 chrX:9077708-9077828 ( 73) AAAAAAAA 1 chrX:9344272-9344392 ( 17) AAAAAAAA 1 chr3L:3664418-3664538 ( 90) AAAAAAAA 1 chr3R:8164989-8165109 ( 60) AAAAAAAA 1 chr2L:14665343-14665463 ( 82) AAAAAAAA 1 chr3R:25596806-25596926 ( 30) AAAAAAAA 1 chr2R:7764301-7764421 ( 56) AAAAAAAA 1 chrX:11785162-11785282 ( 34) AAAAAAAA 1 chr3L:2837283-2837403 ( 20) AAAAAAAA 1 chrX:3100030-3100150 ( 22) AAAAAAAA 1 chr3L:16752830-16752950 ( 8) AAAAAAAA 1 chr3L:14486726-14486846 ( 66) AAAAAAAA 1 chrX:3140070-3140190 ( 112) AAACAAAA 1 chr2L:5236560-5236680 ( 95) AAACAAAA 1 chr2R:11180836-11180956 ( 35) AAACAAAA 1 chr2L:16525292-16525412 ( 41) AAACAAAA 1 chr3R:21824534-21824654 ( 3) AAACAAAA 1 chr3L:16854372-16854492 ( 52) AAACAAAA 1 chr2R:19157637-19157757 ( 93) AAACAAAA 1 chr3R:20564168-20564288 ( 54) AAACAAAA 1 chr3R:11859270-11859390 ( 38) AAACAAAA 1 chr3R:21948194-21948314 ( 25) AAACAAAA 1 chr3L:10386745-10386865 ( 43) AAACAAAA 1 chr2R:9190874-9190994 ( 29) AAACAAAA 1 chr3L:4545261-4545381 ( 103) AAACAAAA 1 chr3R:14651165-14651285 ( 66) AAACAAAA 1 chrX:13209546-13209666 ( 64) AAACAAAA 1 chr2L:12524315-12524435 ( 101) AAACAAAA 1 chr2L:8420404-8420524 ( 112) AAAAAGAA 1 chr2L:16590477-16590597 ( 63) AAAAAGAA 1 chr3L:6447856-6447976 ( 17) AAAAACAA 1 chrX:5724405-5724525 ( 76) AAAAACAA 1 chrX:9989362-9989482 ( 21) AAAAACAA 1 chr3L:9863825-9863945 ( 97) AAAAACAA 1 chrX:13879565-13879685 ( 35) AAAAGAAA 1 chr2R:9856724-9856844 ( 96) AAACAGAA 1 chr3L:1728447-1728567 ( 15) AAACAGAA 1 chr2L:18943424-18943544 ( 54) AAACAGAA 1 chr3L:11213796-11213916 ( 78) AAACAGAA 1 chrX:13948904-13949024 ( 54) AACAAAAA 1 chrX:21369719-21369839 ( 13) AAACGAAA 1 chr3L:2490879-2490999 ( 3) AAATAAAA 1 chr2L:16255655-16255775 ( 11) AAATAAAA 1 chr2R:20938905-20939025 ( 54) AAATAAAA 1 chr3L:14481525-14481645 ( 113) CAAAAAAA 1 chr3L:270773-270893 ( 19) AACCAAAA 1 chr2R:21496665-21496785 ( 94) CAACAAAA 1 chr3L:9462906-9463026 ( 3) AAAAGGAA 1 chr3R:11619543-11619663 ( 4) AAAAGGAA 1 chrX:13644765-13644885 ( 87) AAAAGCAA 1 chrX:15080068-15080188 ( 5) AACAAGAA 1 chr2R:8952749-8952869 ( 66) AACAACAA 1 chr2L:16511458-16511578 ( 1) AAACGGAA 1 chr2L:8202668-8202788 ( 21) AGAAAAAA 1 chr2R:22596926-22597046 ( 12) AAACGCAA 1 chr2R:15530068-15530188 ( 58) AAATACAA 1 chr2L:131479-131599 ( 72) CAAAACAA 1 chrX:5892638-5892758 ( 79) CAAAACAA 1 chrX:3158758-3158878 ( 95) AACCGAAA 1 chr3L:16807661-16807781 ( 101) AACCGAAA 1 chr3R:30289502-30289622 ( 111) ACAAAGAA 1 chr3R:15568055-15568175 ( 36) ACAAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.64897 E= 3.4e-045 178 -237 -1321 -1321 179 -337 -439 -1321 175 -178 -1321 -1321 127 39 -1321 -274 170 -1321 -122 -1321 146 -105 -81 -1321 184 -1321 -1321 -1321 184 -1321 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 3.4e-045 0.957895 0.042105 0.000000 0.000000 0.968421 0.021053 0.010526 0.000000 0.936842 0.063158 0.000000 0.000000 0.673684 0.284211 0.000000 0.042105 0.905263 0.000000 0.094737 0.000000 0.768421 0.105263 0.126316 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-1 regular expression -------------------------------------------------------------------------------- AAA[AC]AAAA -------------------------------------------------------------------------------- Time 7.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-2 width = 8 sites = 84 llr = 698 E-value = 1.2e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :1:::::: probability G :::31::: matrix T a9a79aaa bits 2.2 2.0 1.8 * *** 1.5 * * *** Relative 1.3 *** **** Entropy 1.1 *** **** (12.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10603826-10603946 94 4.00e-05 CAACttttac tttttttt ttcgtttttt chrX:3140070-3140190 15 4.00e-05 tagttttttt tttttttt ccttctgttt chr2L:5490204-5490324 80 4.00e-05 TAGttttact tttttttt ttgtttgccc chr2R:6159946-6160066 55 4.00e-05 TCTGCCAAGC TTTTTTTT ATTTTTTTCG chr3R:21841884-21842004 78 4.00e-05 tttatgttta tttttttt cctgtttttt chr3R:21634816-21634936 105 4.00e-05 CTATGCTTGA TTTTTTTT CAACCATT chrX:17678383-17678503 104 4.00e-05 TTTTTTACTT TTTTTTTT GTCTTATTT chr3R:30005453-30005573 83 4.00e-05 ctttttcatt tttttttt CGTTGCATTT chr3R:10592960-10593080 33 4.00e-05 TTTGCATCTT TTTTTTTT GCATTTTTAC chrX:13114941-13115061 57 4.00e-05 TGGTTTTAAT TTTTTTTT GTTATTTTCA chr3L:8154684-8154804 55 4.00e-05 TTGCAGCTTT TTTTTTTT GCTTTTATTT chr3R:19581977-19582097 53 4.00e-05 ggttttcctt tttttttt tAAATTTTGT chrX:10021924-10022044 41 4.00e-05 GTTTTCATGT TTTTTTTT TCACGAGTTT chr3R:21938669-21938789 88 4.00e-05 TTTTTAATTC TTTTTTTT TCGAACTTTT chr2L:19144290-19144410 86 4.00e-05 tttatttatt tttttttt ttggttttGC chr3L:5943649-5943769 90 4.00e-05 attttcttca tttttttt ttcttttttt chr3L:6447856-6447976 51 4.00e-05 ACTTGTTTTG TTTTTTTT TCGCCGCAAA chrX:5768977-5769097 58 4.00e-05 ttcatttcgg ttTTTTTT ATGGATGCGT chr3R:26543570-26543690 110 4.00e-05 GCAAGTTACG TTTTTTTT GTA chr2L:20812608-20812728 112 4.00e-05 tatttattta tttttttT G chrX:7973433-7973553 40 4.00e-05 TTTATTGGTT TTTTTTTT ACTTTTTGCT chr3R:30289502-30289622 43 4.00e-05 TTGTCTCGTT TTTTTTTT ACTTGCACTT chr2R:17682168-17682288 56 4.00e-05 TGTGTATATA TTTTTTTT AATGAATAAT chrX:16906172-16906292 53 4.00e-05 AGAGtttttt tttttttt ttgttttttt chr3R:11865272-11865392 41 4.00e-05 TTGTTTACAC TTTTTTTT TTGCGCAGAC chrX:18866426-18866546 96 4.00e-05 TGGGGTATTG TTTTTTTT TTTTGTTTCG chr3L:10534041-10534161 51 4.00e-05 TGTGTGTGCT TTTTTTTT AGCGCTTTTA chrX:3151305-3151425 63 4.00e-05 TTTGCTCCCt tttttttt tttttttttt chrX:3158758-3158878 75 4.00e-05 ttgttttttt tttttttt ttgttttGTG chr3R:24004090-24004210 55 4.00e-05 ttttttaggt tttttttt tGTGCTACGG chr3L:16209816-16209936 45 4.00e-05 attattattt tttttttt tgttgtattt chr3R:18146804-18146924 37 4.00e-05 tttttcccat tttttttt cttCGCCCAG chrX:13116567-13116687 67 4.00e-05 tttttttctg tttttttt ctgttttttt chr3L:7184866-7184986 59 4.00e-05 TTTATTTCTA TTTTTTTT TGCTTTTCTG chrX:4664244-4664364 7 4.00e-05 TTTTTT TTTTTTTT GGGTTCCGTT chr3R:9381090-9381210 64 4.00e-05 TTTAGTTTAT TTTTTTTT TGTATATTTG chr3L:22420947-22421067 52 4.00e-05 cctttttttg tttttttt cttttttGTC chrX:8823021-8823141 31 4.00e-05 gttcgttTTC TTTTTTTT TTTAGATTTT chr2L:14665343-14665463 41 4.00e-05 GCTGTTTTGT TTTTTTTT TCTTACTTTT chrX:7980908-7981028 61 4.00e-05 CCCCTGAGTA tttttttt atatttattt chr2R:5708301-5708421 107 4.00e-05 GCCTTGTAGT TTTTTTTT TATTTT chr3L:270773-270893 76 7.13e-05 GCGTCCGCTC TTTGTTTT TTTAACCAAA chrX:13879565-13879685 72 7.13e-05 TGCGTTGATt tttgtttt tgttttgctt chr2L:16525292-16525412 2 7.13e-05 T TTTGTTTT GATAAGTCTG chr2R:17266171-17266291 91 7.13e-05 TTTTTTTCCT TTTGTTTT CTCTCTTTTT chr3R:13716236-13716356 28 7.13e-05 tttccctcgc tttgtttt ctttcgtttc chr2L:4375245-4375365 37 7.13e-05 TTGGCCATGT TTTGTTTT CATTTTTTtc chr2L:168431-168551 66 7.13e-05 TTGTTCGCTC TTTGTTTT GCAAATTCTG chrX:13406414-13406534 11 7.13e-05 Cttttttgtt tttgtttt ttcttttctt chr3L:14481525-14481645 65 7.13e-05 TTTTTTTATT TTTGTTTT TTAGCCCACG chr3R:24595803-24595923 32 7.13e-05 CTGTTTCTTT TTTGTTTT ACTTCCAGCT chrX:3866265-3866385 26 7.13e-05 ttgggtttgt tttgtttt gcttggctat chr3R:14062640-14062760 47 7.13e-05 CTGCCTTTGT TTTGTTTT ATTATTTTTT chrX:19485198-19485318 12 7.13e-05 GCTCGGCGCT TTTGTTTT GGTTTTGgtt chrX:17726114-17726234 38 7.13e-05 actattttgt tttgtttt tgcttgccct chr3R:22526782-22526902 77 7.13e-05 GTCGCTGCTC TTTGTTTT TATCATTTTG chrX:5892638-5892758 3 7.13e-05 AT TTTGTTTT CTTCTCGCCT chrX:6282221-6282341 43 7.13e-05 GGTGGGTTAA TTTGTTTT CGCTCTCTAC chr3R:20564168-20564288 6 1.03e-04 GAGCT TTTTGTTT ACTATCTAAA chr2L:16255655-16255775 54 1.03e-04 CTTTTCTTTC TTTTGTTT GTATTGCCGT chrX:9577398-9577518 24 1.03e-04 CAGTTATCAA TTTTGTTT CTGCTTTTGC chr2L:8420404-8420524 42 1.33e-04 GCGCTCTGGT TCTTTTTT CGTTGCTGCT chr3L:2817988-2818108 40 1.33e-04 GAGTGTATGG TCTTTTTT ACTGTTTTTT chr2L:13035820-13035940 86 1.33e-04 AAAACTTTtc tctttttt gcgctctttt chr3L:83129-83249 7 1.33e-04 AGATGC TCTTTTTT TAATATTTTG chr3L:2837488-2837608 89 1.73e-04 TGTGCCCCTT TTTATTTT TATTATTTTC chr2L:5236560-5236680 32 1.73e-04 CGTTGCCACG TTTATTTT TTCCGGGCTA chr2R:7370403-7370523 23 1.73e-04 CAGGTGTGTT TTTATTTT ACCTTTTTCG chr3R:16334416-16334536 107 1.73e-04 TGTTGTTGGC TTTATTTT GCACAT chrX:17352149-17352269 97 1.98e-04 CCCATTTCGC TTTGGTTT TTCGTCCTTT chrX:17149772-17149892 46 2.22e-04 ACTGATTGCT TCTGTTTT CCCAACAGCA chr2L:5494247-5494367 28 2.93e-04 GATTATTTAA TTATTTTT TCGCCAGTGC chr3R:11619543-11619663 108 2.93e-04 CACGCGTAGA TTATTTTT CAAAT chr3L:2837283-2837403 59 2.93e-04 CATATATTTC TTATTTTT CGCTCTCATT chr2L:16278237-16278357 20 3.23e-04 GTATGCGCCT TTTTCTTT CGCCAGGAGA chr2L:14177707-14177827 89 3.23e-04 ttattattat ttttcttt ttGTGGTGGA chr2R:21065121-21065241 20 3.48e-04 TTAACTCACC TGTGTTTT CATTAATATG chr2L:7028590-7028710 21 3.48e-04 CGGCGGGCAT TGTGTTTT GGACTTTGGC chr2L:18943424-18943544 79 4.59e-04 GAAAAGCTTG TTGTTTTT GCTGTTGCTG chrX:12675369-12675489 113 4.90e-04 TTTTTTTCCT TTTAGTTT chr2R:22596926-22597046 92 5.29e-04 GTTGGACATT TTTTTATT GGGGTCGGCC chr2L:8002337-8002457 23 5.78e-04 TGCATTTATT TCTGGTTT GGTCTATGAA chr3L:16807661-16807781 11 5.78e-04 TAGAATATTT TCTGGTTT TCCGCGTGTT chr2R:21061452-21061572 39 6.28e-04 CAGCGGCCCA TGTTGTTT GCGATGCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10603826-10603946 4e-05 93_[+2]_19 chrX:3140070-3140190 4e-05 14_[+2]_98 chr2L:5490204-5490324 4e-05 79_[+2]_33 chr2R:6159946-6160066 4e-05 54_[+2]_58 chr3R:21841884-21842004 4e-05 77_[+2]_35 chr3R:21634816-21634936 4e-05 104_[+2]_8 chrX:17678383-17678503 4e-05 103_[+2]_9 chr3R:30005453-30005573 4e-05 82_[+2]_30 chr3R:10592960-10593080 4e-05 32_[+2]_80 chrX:13114941-13115061 4e-05 56_[+2]_56 chr3L:8154684-8154804 4e-05 54_[+2]_58 chr3R:19581977-19582097 4e-05 52_[+2]_60 chrX:10021924-10022044 4e-05 40_[+2]_72 chr3R:21938669-21938789 4e-05 87_[+2]_25 chr2L:19144290-19144410 4e-05 85_[+2]_27 chr3L:5943649-5943769 4e-05 89_[+2]_23 chr3L:6447856-6447976 4e-05 50_[+2]_62 chrX:5768977-5769097 4e-05 57_[+2]_55 chr3R:26543570-26543690 4e-05 109_[+2]_3 chr2L:20812608-20812728 4e-05 111_[+2]_1 chrX:7973433-7973553 4e-05 39_[+2]_73 chr3R:30289502-30289622 4e-05 42_[+2]_70 chr2R:17682168-17682288 4e-05 55_[+2]_57 chrX:16906172-16906292 4e-05 52_[+2]_60 chr3R:11865272-11865392 4e-05 40_[+2]_72 chrX:18866426-18866546 4e-05 95_[+2]_17 chr3L:10534041-10534161 4e-05 50_[+2]_62 chrX:3151305-3151425 4e-05 62_[+2]_50 chrX:3158758-3158878 4e-05 74_[+2]_38 chr3R:24004090-24004210 4e-05 54_[+2]_58 chr3L:16209816-16209936 4e-05 44_[+2]_68 chr3R:18146804-18146924 4e-05 36_[+2]_76 chrX:13116567-13116687 4e-05 66_[+2]_46 chr3L:7184866-7184986 4e-05 58_[+2]_54 chrX:4664244-4664364 4e-05 6_[+2]_106 chr3R:9381090-9381210 4e-05 63_[+2]_49 chr3L:22420947-22421067 4e-05 51_[+2]_61 chrX:8823021-8823141 4e-05 30_[+2]_82 chr2L:14665343-14665463 4e-05 40_[+2]_72 chrX:7980908-7981028 4e-05 60_[+2]_52 chr2R:5708301-5708421 4e-05 106_[+2]_6 chr3L:270773-270893 7.1e-05 75_[+2]_37 chrX:13879565-13879685 7.1e-05 71_[+2]_41 chr2L:16525292-16525412 7.1e-05 1_[+2]_111 chr2R:17266171-17266291 7.1e-05 90_[+2]_22 chr3R:13716236-13716356 7.1e-05 27_[+2]_85 chr2L:4375245-4375365 7.1e-05 36_[+2]_76 chr2L:168431-168551 7.1e-05 65_[+2]_47 chrX:13406414-13406534 7.1e-05 10_[+2]_102 chr3L:14481525-14481645 7.1e-05 64_[+2]_48 chr3R:24595803-24595923 7.1e-05 31_[+2]_81 chrX:3866265-3866385 7.1e-05 25_[+2]_87 chr3R:14062640-14062760 7.1e-05 46_[+2]_66 chrX:19485198-19485318 7.1e-05 11_[+2]_101 chrX:17726114-17726234 7.1e-05 37_[+2]_75 chr3R:22526782-22526902 7.1e-05 76_[+2]_36 chrX:5892638-5892758 7.1e-05 2_[+2]_110 chrX:6282221-6282341 7.1e-05 42_[+2]_70 chr3R:20564168-20564288 0.0001 5_[+2]_107 chr2L:16255655-16255775 0.0001 53_[+2]_59 chrX:9577398-9577518 0.0001 23_[+2]_89 chr2L:8420404-8420524 0.00013 41_[+2]_71 chr3L:2817988-2818108 0.00013 39_[+2]_73 chr2L:13035820-13035940 0.00013 85_[+2]_27 chr3L:83129-83249 0.00013 6_[+2]_106 chr3L:2837488-2837608 0.00017 88_[+2]_24 chr2L:5236560-5236680 0.00017 31_[+2]_81 chr2R:7370403-7370523 0.00017 22_[+2]_90 chr3R:16334416-16334536 0.00017 106_[+2]_6 chrX:17352149-17352269 0.0002 96_[+2]_16 chrX:17149772-17149892 0.00022 45_[+2]_67 chr2L:5494247-5494367 0.00029 27_[+2]_85 chr3R:11619543-11619663 0.00029 107_[+2]_5 chr3L:2837283-2837403 0.00029 58_[+2]_54 chr2L:16278237-16278357 0.00032 19_[+2]_93 chr2L:14177707-14177827 0.00032 88_[+2]_24 chr2R:21065121-21065241 0.00035 19_[+2]_93 chr2L:7028590-7028710 0.00035 20_[+2]_92 chr2L:18943424-18943544 0.00046 78_[+2]_34 chrX:12675369-12675489 0.00049 112_[+2] chr2R:22596926-22597046 0.00053 91_[+2]_21 chr2L:8002337-8002457 0.00058 22_[+2]_90 chr3L:16807661-16807781 0.00058 10_[+2]_102 chr2R:21061452-21061572 0.00063 38_[+2]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=84 chr2R:10603826-10603946 ( 94) TTTTTTTT 1 chrX:3140070-3140190 ( 15) TTTTTTTT 1 chr2L:5490204-5490324 ( 80) TTTTTTTT 1 chr2R:6159946-6160066 ( 55) TTTTTTTT 1 chr3R:21841884-21842004 ( 78) TTTTTTTT 1 chr3R:21634816-21634936 ( 105) TTTTTTTT 1 chrX:17678383-17678503 ( 104) TTTTTTTT 1 chr3R:30005453-30005573 ( 83) TTTTTTTT 1 chr3R:10592960-10593080 ( 33) TTTTTTTT 1 chrX:13114941-13115061 ( 57) TTTTTTTT 1 chr3L:8154684-8154804 ( 55) TTTTTTTT 1 chr3R:19581977-19582097 ( 53) TTTTTTTT 1 chrX:10021924-10022044 ( 41) TTTTTTTT 1 chr3R:21938669-21938789 ( 88) TTTTTTTT 1 chr2L:19144290-19144410 ( 86) TTTTTTTT 1 chr3L:5943649-5943769 ( 90) TTTTTTTT 1 chr3L:6447856-6447976 ( 51) TTTTTTTT 1 chrX:5768977-5769097 ( 58) TTTTTTTT 1 chr3R:26543570-26543690 ( 110) TTTTTTTT 1 chr2L:20812608-20812728 ( 112) TTTTTTTT 1 chrX:7973433-7973553 ( 40) TTTTTTTT 1 chr3R:30289502-30289622 ( 43) TTTTTTTT 1 chr2R:17682168-17682288 ( 56) TTTTTTTT 1 chrX:16906172-16906292 ( 53) TTTTTTTT 1 chr3R:11865272-11865392 ( 41) TTTTTTTT 1 chrX:18866426-18866546 ( 96) TTTTTTTT 1 chr3L:10534041-10534161 ( 51) TTTTTTTT 1 chrX:3151305-3151425 ( 63) TTTTTTTT 1 chrX:3158758-3158878 ( 75) TTTTTTTT 1 chr3R:24004090-24004210 ( 55) TTTTTTTT 1 chr3L:16209816-16209936 ( 45) TTTTTTTT 1 chr3R:18146804-18146924 ( 37) TTTTTTTT 1 chrX:13116567-13116687 ( 67) TTTTTTTT 1 chr3L:7184866-7184986 ( 59) TTTTTTTT 1 chrX:4664244-4664364 ( 7) TTTTTTTT 1 chr3R:9381090-9381210 ( 64) TTTTTTTT 1 chr3L:22420947-22421067 ( 52) TTTTTTTT 1 chrX:8823021-8823141 ( 31) TTTTTTTT 1 chr2L:14665343-14665463 ( 41) TTTTTTTT 1 chrX:7980908-7981028 ( 61) TTTTTTTT 1 chr2R:5708301-5708421 ( 107) TTTTTTTT 1 chr3L:270773-270893 ( 76) TTTGTTTT 1 chrX:13879565-13879685 ( 72) TTTGTTTT 1 chr2L:16525292-16525412 ( 2) TTTGTTTT 1 chr2R:17266171-17266291 ( 91) TTTGTTTT 1 chr3R:13716236-13716356 ( 28) TTTGTTTT 1 chr2L:4375245-4375365 ( 37) TTTGTTTT 1 chr2L:168431-168551 ( 66) TTTGTTTT 1 chrX:13406414-13406534 ( 11) TTTGTTTT 1 chr3L:14481525-14481645 ( 65) TTTGTTTT 1 chr3R:24595803-24595923 ( 32) TTTGTTTT 1 chrX:3866265-3866385 ( 26) TTTGTTTT 1 chr3R:14062640-14062760 ( 47) TTTGTTTT 1 chrX:19485198-19485318 ( 12) TTTGTTTT 1 chrX:17726114-17726234 ( 38) TTTGTTTT 1 chr3R:22526782-22526902 ( 77) TTTGTTTT 1 chrX:5892638-5892758 ( 3) TTTGTTTT 1 chrX:6282221-6282341 ( 43) TTTGTTTT 1 chr3R:20564168-20564288 ( 6) TTTTGTTT 1 chr2L:16255655-16255775 ( 54) TTTTGTTT 1 chrX:9577398-9577518 ( 24) TTTTGTTT 1 chr2L:8420404-8420524 ( 42) TCTTTTTT 1 chr3L:2817988-2818108 ( 40) TCTTTTTT 1 chr2L:13035820-13035940 ( 86) TCTTTTTT 1 chr3L:83129-83249 ( 7) TCTTTTTT 1 chr3L:2837488-2837608 ( 89) TTTATTTT 1 chr2L:5236560-5236680 ( 32) TTTATTTT 1 chr2R:7370403-7370523 ( 23) TTTATTTT 1 chr3R:16334416-16334536 ( 107) TTTATTTT 1 chrX:17352149-17352269 ( 97) TTTGGTTT 1 chrX:17149772-17149892 ( 46) TCTGTTTT 1 chr2L:5494247-5494367 ( 28) TTATTTTT 1 chr3R:11619543-11619663 ( 108) TTATTTTT 1 chr3L:2837283-2837403 ( 59) TTATTTTT 1 chr2L:16278237-16278357 ( 20) TTTTCTTT 1 chr2L:14177707-14177827 ( 89) TTTTCTTT 1 chr2R:21065121-21065241 ( 20) TGTGTTTT 1 chr2L:7028590-7028710 ( 21) TGTGTTTT 1 chr2L:18943424-18943544 ( 79) TTGTTTTT 1 chrX:12675369-12675489 ( 113) TTTAGTTT 1 chr2R:22596926-22597046 ( 92) TTTTTATT 1 chr2L:8002337-8002457 ( 23) TCTGGTTT 1 chr3L:16807661-16807781 ( 11) TCTGGTTT 1 chr2R:21061452-21061572 ( 39) TGTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3778 E= 1.2e-042 -1304 -1304 -1304 182 -1304 -138 -263 164 -297 -1304 -421 175 -223 -1304 31 124 -1304 -319 -122 164 -455 -1304 -1304 181 -1304 -1304 -1304 182 -1304 -1304 -1304 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.2e-042 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.035714 0.880952 0.035714 0.000000 0.011905 0.952381 0.059524 0.000000 0.273810 0.666667 0.000000 0.023810 0.095238 0.880952 0.011905 0.000000 0.000000 0.988095 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGACTTTG MEME-3 width = 8 sites = 56 llr = 494 E-value = 2.5e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2a::::1 pos.-specific C 12:a1::: probability G 96:::::9 matrix T :1::9a9: bits 2.2 * 2.0 * 1.8 * * * 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 * ****** (12.7 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGACTTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25493954-25494074 46 1.47e-05 AAGACTAAGT GGACTTTG GAACTGGTTA chrX:13644765-13644885 38 1.47e-05 CTTGTCGCTT GGACTTTG AACCGCGCCG chr2R:12926109-12926229 44 1.47e-05 ggcGGTACAT GGACTTTG GAAGTCTATC chrX:13406414-13406534 69 1.47e-05 GCTGGCACTT GGACTTTG CACTCCGGTG chr2R:24957394-24957514 65 1.47e-05 TCGAGTTTTT GGACTTTG TACCAGAGGC chr2L:7028590-7028710 29 1.47e-05 ATTGTGTTTT GGACTTTG GCCGTGCCGT chr2R:22596926-22597046 36 1.47e-05 CTATCGCTAT GGACTTTG GACATGGCGA chr3R:24117059-24117179 74 1.47e-05 GGTCCCAGCC GGACTTTG GCCTGGTGTT chr3L:12014434-12014554 52 1.47e-05 GACGAGCTTT GGACTTTG GAGCCAGCCA chrX:2592395-2592515 65 1.47e-05 GCACGCCGCT GGACTTTG ACATTGACTG chr2R:24785644-24785764 72 1.47e-05 TGACATTTAT GGACTTTG GAATCAGCGT chr2L:16488030-16488150 27 1.47e-05 TAATACTTCT GGACTTTG AAGCGACAGT chr2L:4885994-4886114 80 1.47e-05 TTGCGAAACT GGACTTTG CAAAATATTG chrX:15080068-15080188 48 1.47e-05 CTGACGGTTT GGACTTTG GACGGTTTAC chr2R:19445675-19445795 63 1.47e-05 TGTAATCCGT GGACTTTG CTCTACGTAC chr2L:19868077-19868197 64 1.47e-05 AACGGCCTGT GGACTTTG GCCCGCGGGC chr3L:4545261-4545381 81 1.47e-05 CTCCGAAACC GGACTTTG CCCTGTGAAA chr3R:5308254-5308374 63 1.47e-05 CTCCCTCGGC GGACTTTG TGCACACACG chr2R:11214028-11214148 68 1.47e-05 ATGTAGATAT GGACTTTG ACCAGCAGTC chrX:21369719-21369839 104 2.90e-05 CAATTAAATT GCACTTTG CCTAcaaca chr3R:29460676-29460796 53 2.90e-05 CCAGTAATTT GCACTTTG TTCAGTGCAA chr2L:20878173-20878293 26 2.90e-05 TCGGTGGAGT GCACTTTG ACCAGCATCA chr3R:4469012-4469132 9 2.90e-05 CAAAGACT GCACTTTG TACCGGCCGA chrX:17694317-17694437 26 2.90e-05 GTCACACTTT GCACTTTG CCTTCGCCAT chr2R:24553609-24553729 65 2.90e-05 GCAAGCTGTT GCACTTTG CACTGAAACG chr2R:24980669-24980789 54 2.90e-05 GCTAAACTTT GCACTTTG AGTTCGCTCT chrX:15068620-15068740 50 2.90e-05 GCGATCAGCC GCACTTTG ATCTCGCTCT chr3L:5141415-5141535 50 4.75e-05 ATCGAAACTT GAACTTTG ACCACTTCCA chr2L:131479-131599 49 4.75e-05 TGTATATAGT GAACTTTG TACCAGGCGT chr3R:21634816-21634936 23 4.75e-05 AAGAGAGGAA GAACTTTG gcccctgcgc chr2R:24987639-24987759 71 4.75e-05 ACATACGGTT GAACTTTG AATTCAGCAC chr3R:12717060-12717180 92 4.75e-05 GTCTGTGTCT GAACTTTG AATACGGACT chr3L:1381065-1381185 93 4.75e-05 GAATGGAAAT GAACTTTG AAGCCTGCGT chr3R:21653559-21653679 24 4.75e-05 ATTTGACTTT GAACTTTG CGACTTTTGC chr2R:21618982-21619102 73 4.75e-05 CTGAAACACT GAACTTTG TTCGTCGAAA chr3R:27925803-27925923 95 4.75e-05 CGACCGTCCT GAACTTTG CCCAGCGCGT chr3L:16209816-16209936 85 6.19e-05 CAGCTGAGTT CGACTTTG ACTTGTGTCT chr2R:14515128-14515248 62 6.19e-05 TCGCTGCAAG CGACTTTG GACTGTGGAT chrX:9077708-9077828 3 6.19e-05 aa CGACTTTG AAATAAATAA chrX:9344272-9344392 111 6.19e-05 GCCGTCGCCT CGACTTTG CT chr2R:15530068-15530188 32 9.19e-05 GGATCCAAGT GGACCTTG CCCCACGCAC chr2L:168431-168551 44 9.19e-05 AGCGGTCTTC GGACCTTG AGCTTTGTTC chr2R:10807322-10807442 41 9.19e-05 AACGAACTTA GGACCTTG CCAGGATACC chrX:8159114-8159234 12 9.19e-05 GTGGAATGTC GTACTTTG CACTGGGCAC chr3L:1728447-1728567 56 9.19e-05 CACTTGAGCT GTACTTTG GATAGCGAAA chr3L:9863825-9863945 33 9.19e-05 TGCTGAATGT GTACTTTG AACTGGGCCA chr3R:21268365-21268485 43 1.10e-04 ATATATGTGT GGACTTTA TACATATGCA chr2R:23730962-23731082 39 1.10e-04 TGGGCGGCCT GGACTTTA TACCCGCCAA chr3L:7341350-7341470 27 1.10e-04 ACGGTTACGA GGACTTTA GTCGCGATGC chr3R:23785041-23785161 54 1.10e-04 ACTCATCCCC GGACTTTA CCCTCACACA chr3L:2837283-2837403 31 1.33e-04 AAAAAAAGGT GGACTTCG GTTTTATATG chr2R:8896340-8896460 75 1.33e-04 GCGACTGGTT GGACTTCG TCAACAGATG chr3L:14059730-14059850 85 1.59e-04 AACGGACAAT GGACTTGG GAGTGGAATC chr3L:22420947-22421067 86 2.39e-04 TCAGTTTGTT GGACTTTT CTGGGCAGCT chr3R:21841884-21842004 53 2.85e-04 CCGTTGGTCG GCCCTTTG TCCCCAGttt chr3R:5622182-5622302 110 2.85e-04 ATTGTCGCCG GCCCTTTG TTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25493954-25494074 1.5e-05 45_[+3]_67 chrX:13644765-13644885 1.5e-05 37_[+3]_75 chr2R:12926109-12926229 1.5e-05 43_[+3]_69 chrX:13406414-13406534 1.5e-05 68_[+3]_44 chr2R:24957394-24957514 1.5e-05 64_[+3]_48 chr2L:7028590-7028710 1.5e-05 28_[+3]_84 chr2R:22596926-22597046 1.5e-05 35_[+3]_77 chr3R:24117059-24117179 1.5e-05 73_[+3]_39 chr3L:12014434-12014554 1.5e-05 51_[+3]_61 chrX:2592395-2592515 1.5e-05 64_[+3]_48 chr2R:24785644-24785764 1.5e-05 71_[+3]_41 chr2L:16488030-16488150 1.5e-05 26_[+3]_86 chr2L:4885994-4886114 1.5e-05 79_[+3]_33 chrX:15080068-15080188 1.5e-05 47_[+3]_65 chr2R:19445675-19445795 1.5e-05 62_[+3]_50 chr2L:19868077-19868197 1.5e-05 63_[+3]_49 chr3L:4545261-4545381 1.5e-05 80_[+3]_32 chr3R:5308254-5308374 1.5e-05 62_[+3]_50 chr2R:11214028-11214148 1.5e-05 67_[+3]_45 chrX:21369719-21369839 2.9e-05 103_[+3]_9 chr3R:29460676-29460796 2.9e-05 52_[+3]_60 chr2L:20878173-20878293 2.9e-05 25_[+3]_87 chr3R:4469012-4469132 2.9e-05 8_[+3]_104 chrX:17694317-17694437 2.9e-05 25_[+3]_87 chr2R:24553609-24553729 2.9e-05 64_[+3]_48 chr2R:24980669-24980789 2.9e-05 53_[+3]_59 chrX:15068620-15068740 2.9e-05 49_[+3]_63 chr3L:5141415-5141535 4.8e-05 49_[+3]_63 chr2L:131479-131599 4.8e-05 48_[+3]_64 chr3R:21634816-21634936 4.8e-05 22_[+3]_90 chr2R:24987639-24987759 4.8e-05 70_[+3]_42 chr3R:12717060-12717180 4.8e-05 91_[+3]_21 chr3L:1381065-1381185 4.8e-05 92_[+3]_20 chr3R:21653559-21653679 4.8e-05 23_[+3]_89 chr2R:21618982-21619102 4.8e-05 72_[+3]_40 chr3R:27925803-27925923 4.8e-05 94_[+3]_18 chr3L:16209816-16209936 6.2e-05 84_[+3]_28 chr2R:14515128-14515248 6.2e-05 61_[+3]_51 chrX:9077708-9077828 6.2e-05 2_[+3]_110 chrX:9344272-9344392 6.2e-05 110_[+3]_2 chr2R:15530068-15530188 9.2e-05 31_[+3]_81 chr2L:168431-168551 9.2e-05 43_[+3]_69 chr2R:10807322-10807442 9.2e-05 40_[+3]_72 chrX:8159114-8159234 9.2e-05 11_[+3]_101 chr3L:1728447-1728567 9.2e-05 55_[+3]_57 chr3L:9863825-9863945 9.2e-05 32_[+3]_80 chr3R:21268365-21268485 0.00011 42_[+3]_70 chr2R:23730962-23731082 0.00011 38_[+3]_74 chr3L:7341350-7341470 0.00011 26_[+3]_86 chr3R:23785041-23785161 0.00011 53_[+3]_59 chr3L:2837283-2837403 0.00013 30_[+3]_82 chr2R:8896340-8896460 0.00013 74_[+3]_38 chr3L:14059730-14059850 0.00016 84_[+3]_28 chr3L:22420947-22421067 0.00024 85_[+3]_27 chr3R:21841884-21842004 0.00028 52_[+3]_60 chr3R:5622182-5622302 0.00028 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGACTTTG width=8 seqs=56 chr3R:25493954-25494074 ( 46) GGACTTTG 1 chrX:13644765-13644885 ( 38) GGACTTTG 1 chr2R:12926109-12926229 ( 44) GGACTTTG 1 chrX:13406414-13406534 ( 69) GGACTTTG 1 chr2R:24957394-24957514 ( 65) GGACTTTG 1 chr2L:7028590-7028710 ( 29) GGACTTTG 1 chr2R:22596926-22597046 ( 36) GGACTTTG 1 chr3R:24117059-24117179 ( 74) GGACTTTG 1 chr3L:12014434-12014554 ( 52) GGACTTTG 1 chrX:2592395-2592515 ( 65) GGACTTTG 1 chr2R:24785644-24785764 ( 72) GGACTTTG 1 chr2L:16488030-16488150 ( 27) GGACTTTG 1 chr2L:4885994-4886114 ( 80) GGACTTTG 1 chrX:15080068-15080188 ( 48) GGACTTTG 1 chr2R:19445675-19445795 ( 63) GGACTTTG 1 chr2L:19868077-19868197 ( 64) GGACTTTG 1 chr3L:4545261-4545381 ( 81) GGACTTTG 1 chr3R:5308254-5308374 ( 63) GGACTTTG 1 chr2R:11214028-11214148 ( 68) GGACTTTG 1 chrX:21369719-21369839 ( 104) GCACTTTG 1 chr3R:29460676-29460796 ( 53) GCACTTTG 1 chr2L:20878173-20878293 ( 26) GCACTTTG 1 chr3R:4469012-4469132 ( 9) GCACTTTG 1 chrX:17694317-17694437 ( 26) GCACTTTG 1 chr2R:24553609-24553729 ( 65) GCACTTTG 1 chr2R:24980669-24980789 ( 54) GCACTTTG 1 chrX:15068620-15068740 ( 50) GCACTTTG 1 chr3L:5141415-5141535 ( 50) GAACTTTG 1 chr2L:131479-131599 ( 49) GAACTTTG 1 chr3R:21634816-21634936 ( 23) GAACTTTG 1 chr2R:24987639-24987759 ( 71) GAACTTTG 1 chr3R:12717060-12717180 ( 92) GAACTTTG 1 chr3L:1381065-1381185 ( 93) GAACTTTG 1 chr3R:21653559-21653679 ( 24) GAACTTTG 1 chr2R:21618982-21619102 ( 73) GAACTTTG 1 chr3R:27925803-27925923 ( 95) GAACTTTG 1 chr3L:16209816-16209936 ( 85) CGACTTTG 1 chr2R:14515128-14515248 ( 62) CGACTTTG 1 chrX:9077708-9077828 ( 3) CGACTTTG 1 chrX:9344272-9344392 ( 111) CGACTTTG 1 chr2R:15530068-15530188 ( 32) GGACCTTG 1 chr2L:168431-168551 ( 44) GGACCTTG 1 chr2R:10807322-10807442 ( 41) GGACCTTG 1 chrX:8159114-8159234 ( 12) GTACTTTG 1 chr3L:1728447-1728567 ( 56) GTACTTTG 1 chr3L:9863825-9863945 ( 33) GTACTTTG 1 chr3R:21268365-21268485 ( 43) GGACTTTA 1 chr2R:23730962-23731082 ( 39) GGACTTTA 1 chr3L:7341350-7341470 ( 27) GGACTTTA 1 chr3R:23785041-23785161 ( 54) GGACTTTA 1 chr3L:2837283-2837403 ( 31) GGACTTCG 1 chr2R:8896340-8896460 ( 75) GGACTTCG 1 chr3L:14059730-14059850 ( 85) GGACTTGG 1 chr3L:22420947-22421067 ( 86) GGACTTTT 1 chr3R:21841884-21842004 ( 53) GCCCTTTG 1 chr3R:5622182-5622302 ( 110) GCCCTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.8193 E= 2.5e-025 -1245 -161 207 -1245 -80 -28 146 -240 179 -260 -1245 -1245 -1245 220 -1245 -1245 -1245 -202 -1245 175 -1245 -1245 -1245 182 -1245 -260 -363 175 -197 -1245 204 -398 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 2.5e-025 0.000000 0.071429 0.928571 0.000000 0.160714 0.178571 0.607143 0.053571 0.964286 0.035714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.053571 0.000000 0.946429 0.000000 0.000000 0.000000 1.000000 0.000000 0.035714 0.017857 0.946429 0.071429 0.000000 0.910714 0.017857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACTTTG MEME-3 regular expression -------------------------------------------------------------------------------- GGACTTTG -------------------------------------------------------------------------------- Time 19.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-4 width = 8 sites = 30 llr = 305 E-value = 2.4e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :aaa::1: pos.-specific C 9:::::9a probability G ::::a:1: matrix T 1::::a:: bits 2.2 * 2.0 * * 1.8 ****** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6148133-6148253 24 1.38e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chr2L:5494247-5494367 64 1.38e-05 CGCGCAGTAG CAAAGTCC ACAGCCCCTT chr3R:26464532-26464652 57 1.38e-05 ACCGGCTGGC CAAAGTCC ACGCGGCGAA chr2R:9856724-9856844 59 1.38e-05 ATCTTCTGAC CAAAGTCC ACCGCTTGGT chr3L:20387941-20388061 74 1.38e-05 CGTGCACTTC CAAAGTCC AATTCGGTGC chr2L:8002337-8002457 83 1.38e-05 ACGCTGGGTG CAAAGTCC ACTATGCGGA chr3L:83129-83249 46 1.38e-05 CGCCAGAGTC CAAAGTCC ATAAAGCATT chr2L:8202668-8202788 50 1.38e-05 TGGGCGAGTG CAAAGTCC AAGAAATTCC chrX:11881820-11881940 40 1.38e-05 TAAGCCAGCA CAAAGTCC ACGCTCCGTT chrX:17149772-17149892 19 1.38e-05 CACTCCAGAG CAAAGTCC ACAATAACAA chr2L:9707212-9707332 36 1.38e-05 TCCCACATTA CAAAGTCC GCTGCGAGAT chr3R:10115114-10115234 65 1.38e-05 ATTGCGAATC CAAAGTCC ATTAAGTCGA chr2L:8155955-8156075 42 1.38e-05 AACGAGTGGA CAAAGTCC AAGTTTGTAT chr2R:21136173-21136293 43 1.38e-05 GTACTGCGGT CAAAGTCC AGGCCACTCA chr2L:7207800-7207920 50 1.38e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chr2R:20938905-20939025 86 1.38e-05 AAGTGCAAGA CAAAGTCC AAGCGAATTG chr2R:16077967-16078087 40 1.38e-05 gtccacagtc caaagtcc atagtccata chr3L:2567334-2567454 87 1.38e-05 GCGGAGACAC CAAAGTCC ACCAGCTTCA chr2L:8418252-8418372 36 1.38e-05 ATATGAAGCT CAAAGTCC GAAGCTCAAT chr2R:5708301-5708421 52 1.38e-05 GAGCCTCGGC CAAAGTCC ACGTACTCAG chr4:60745-60865 68 1.38e-05 TCAGCTTTAT CAAAGTCC TGCAATAACA chrX:7100864-7100984 65 1.38e-05 GAACATGGCT CAAAGTCC GATTCGGATG chr3L:1866525-1866645 105 3.18e-05 ATAAGGGTCT TAAAGTCC ACATTCAA chr2L:135844-135964 45 3.18e-05 TTCACTCGGT TAAAGTCC AAGCAAACTG chr3R:8007702-8007822 1 3.18e-05 . TAAAGTCC CCCAGCACCA chr2R:15350675-15350795 105 4.59e-05 TAGGAGGAGG CAAAGTGC CAGCCAGC chr3L:2568343-2568463 110 4.59e-05 CAGGCGTCCA CAAAGTGC GAC chr3L:18001687-18001807 92 6.37e-05 ACAGCTGGAT CAAAGTAC TACGATAAAG chr2L:4374169-4374289 53 6.37e-05 TGCGTCGGTG CAAAGTAC AAACATCCTT chr3R:14705398-14705518 2 8.11e-05 G CAAAATCC AACCGAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6148133-6148253 1.4e-05 23_[+4]_89 chr2L:5494247-5494367 1.4e-05 63_[+4]_49 chr3R:26464532-26464652 1.4e-05 56_[+4]_56 chr2R:9856724-9856844 1.4e-05 58_[+4]_54 chr3L:20387941-20388061 1.4e-05 73_[+4]_39 chr2L:8002337-8002457 1.4e-05 82_[+4]_30 chr3L:83129-83249 1.4e-05 45_[+4]_67 chr2L:8202668-8202788 1.4e-05 49_[+4]_63 chrX:11881820-11881940 1.4e-05 39_[+4]_73 chrX:17149772-17149892 1.4e-05 18_[+4]_94 chr2L:9707212-9707332 1.4e-05 35_[+4]_77 chr3R:10115114-10115234 1.4e-05 64_[+4]_48 chr2L:8155955-8156075 1.4e-05 41_[+4]_71 chr2R:21136173-21136293 1.4e-05 42_[+4]_70 chr2L:7207800-7207920 1.4e-05 49_[+4]_63 chr2R:20938905-20939025 1.4e-05 85_[+4]_27 chr2R:16077967-16078087 1.4e-05 39_[+4]_73 chr3L:2567334-2567454 1.4e-05 86_[+4]_26 chr2L:8418252-8418372 1.4e-05 35_[+4]_77 chr2R:5708301-5708421 1.4e-05 51_[+4]_61 chr4:60745-60865 1.4e-05 67_[+4]_45 chrX:7100864-7100984 1.4e-05 64_[+4]_48 chr3L:1866525-1866645 3.2e-05 104_[+4]_8 chr2L:135844-135964 3.2e-05 44_[+4]_68 chr3R:8007702-8007822 3.2e-05 [+4]_112 chr2R:15350675-15350795 4.6e-05 104_[+4]_8 chr3L:2568343-2568463 4.6e-05 109_[+4]_3 chr3L:18001687-18001807 6.4e-05 91_[+4]_21 chr2L:4374169-4374289 6.4e-05 52_[+4]_60 chr3R:14705398-14705518 8.1e-05 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=30 chr2R:6148133-6148253 ( 24) CAAAGTCC 1 chr2L:5494247-5494367 ( 64) CAAAGTCC 1 chr3R:26464532-26464652 ( 57) CAAAGTCC 1 chr2R:9856724-9856844 ( 59) CAAAGTCC 1 chr3L:20387941-20388061 ( 74) CAAAGTCC 1 chr2L:8002337-8002457 ( 83) CAAAGTCC 1 chr3L:83129-83249 ( 46) CAAAGTCC 1 chr2L:8202668-8202788 ( 50) CAAAGTCC 1 chrX:11881820-11881940 ( 40) CAAAGTCC 1 chrX:17149772-17149892 ( 19) CAAAGTCC 1 chr2L:9707212-9707332 ( 36) CAAAGTCC 1 chr3R:10115114-10115234 ( 65) CAAAGTCC 1 chr2L:8155955-8156075 ( 42) CAAAGTCC 1 chr2R:21136173-21136293 ( 43) CAAAGTCC 1 chr2L:7207800-7207920 ( 50) CAAAGTCC 1 chr2R:20938905-20939025 ( 86) CAAAGTCC 1 chr2R:16077967-16078087 ( 40) CAAAGTCC 1 chr3L:2567334-2567454 ( 87) CAAAGTCC 1 chr2L:8418252-8418372 ( 36) CAAAGTCC 1 chr2R:5708301-5708421 ( 52) CAAAGTCC 1 chr4:60745-60865 ( 68) CAAAGTCC 1 chrX:7100864-7100984 ( 65) CAAAGTCC 1 chr3L:1866525-1866645 ( 105) TAAAGTCC 1 chr2L:135844-135964 ( 45) TAAAGTCC 1 chr3R:8007702-8007822 ( 1) TAAAGTCC 1 chr2R:15350675-15350795 ( 105) CAAAGTGC 1 chr3L:2568343-2568463 ( 110) CAAAGTGC 1 chr3L:18001687-18001807 ( 92) CAAAGTAC 1 chr2L:4374169-4374289 ( 53) CAAAGTAC 1 chr3R:14705398-14705518 ( 2) CAAAATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 2.4e-018 -1155 205 -1155 -150 184 -1155 -1155 -1155 184 -1155 -1155 -1155 184 -1155 -1155 -1155 -306 -1155 213 -1155 -1155 -1155 -1155 182 -206 199 -173 -1155 -1155 220 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.4e-018 0.000000 0.900000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.966667 0.000000 0.000000 0.000000 0.000000 1.000000 0.066667 0.866667 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 25.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTKTT MEME-5 width = 8 sites = 65 llr = 497 E-value = 7.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C ::22:::1 probability G ::2::4:: matrix T aa68a5a9 bits 2.2 2.0 1.8 ** * * 1.5 ** * * Relative 1.3 ** * ** Entropy 1.1 ** ** ** (11.0 bits) 0.9 ** ** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus C G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10603826-10603946 107 3.13e-05 tttttttcgt tttttgtt ctcttt chr3L:270773-270893 41 3.13e-05 TACATTTCGT TTTTTGTT TTTCGTTTTC chrX:13114941-13115061 75 3.13e-05 GTTATTTTCA TTTTTGTT TGCTGGCTGC chr3L:8154684-8154804 70 3.13e-05 TTTGCTTTTA TTTTTGTT TTGTATTTTC chrX:13406414-13406534 3 3.13e-05 Ct tttttgtt tttgtttttt chrX:10021924-10022044 11 3.13e-05 ACGATTATGT TTTTTGTT TTGTTTTCTC chr3R:16334416-16334536 93 3.13e-05 TGTTTGTGGT TTTTTGTT GTTGGCTTTA chr3R:14062640-14062760 86 3.13e-05 TTTCTTCGGT TTTTTGTT TTTCTCACTT chrX:7973433-7973553 24 3.13e-05 TCCTTACTCC TTTTTGTT TATTGGTTTT chr3R:30289502-30289622 63 3.13e-05 TTGCACTTCT TTTTTGTT TTAACCCGCA chrX:17726114-17726234 12 3.13e-05 TTGTGCTTCT Tttttgtt ttgtttcgac chrX:18866426-18866546 31 3.13e-05 CCTTTTTACC TTTTTGTT GCGTCCCTTT chr3R:24004090-24004210 26 3.13e-05 CATCGGtttc tttttgtt tgtttgtttt chrX:13116567-13116687 11 3.13e-05 CTTCTTTTTA TTTTTGTT GTCTTTAGCC chr3L:7184866-7184986 2 3.13e-05 G TTTTTGTT GGTTTTGTTT chr3R:21841884-21842004 104 7.13e-05 ttattttcat tttttttt tCTGAGCCT chr3R:19581977-19582097 23 7.13e-05 tttctttttt tttttttt ggttttttgt chr3R:21938669-21938789 103 7.13e-05 TTTTCGAACT TTTTTTTT GTGTATTTTT chr3L:5943649-5943769 104 7.13e-05 ttttttcttt tttttttt GGTTGCATC chrX:5768977-5769097 25 7.13e-05 tttcgtttcg tttttttt cttgtagttt chrX:16906172-16906292 64 7.13e-05 tttttttttg tttttttt GGGCACGAGA chr3L:10534041-10534161 89 7.13e-05 TTTTTCTTCT TTTTTTTT TGTATATTTC chrX:3151305-3151425 71 7.13e-05 Cttttttttt tttttttt ttGTATATGT chrX:3158758-3158878 46 7.13e-05 ACTGGAGttt tttttttt ataatatatc chrX:8823021-8823141 45 7.13e-05 TTTTTTTAGA TTTTTTTT CGCTTATTTT chrX:7980908-7981028 106 7.13e-05 atagttttct tttttttt tcctttt chr2R:21065121-21065241 40 9.55e-05 TTAATATGGT TTCTTGTT AACAAGGCTT chrX:19485198-19485318 88 9.55e-05 tttcttgctg ttcttGTT CTGAGCGAGA chr3L:83129-83249 110 9.55e-05 GGCATTAATT TTCTTGTT TTG chr2R:6159946-6160066 93 1.51e-04 ATTTTGGTTT TTCTTTTT TCAGGGCGTT chr2L:13035820-13035940 42 1.51e-04 CAGAAAGATT TTCTTTTT TTCAAAAGAA chr3R:30005453-30005573 71 1.51e-04 TCttcttttt ttcttttt catttttttt chr3R:10592960-10593080 11 1.51e-04 GTTGGCTCCA TTGTTGTT ACTTTTTGCA chr3L:14481525-14481645 37 1.51e-04 CTTGTCCCTC TTGTTGTT TCTGTTGCCG chr2L:19144290-19144410 65 1.51e-04 CCTCACCACC ttcttttt atatttattt chr3L:22420947-22421067 13 1.51e-04 ATATGAACTC TTGTTGTT GCGGTTCTCG chrX:17678383-17678503 82 1.82e-04 CCTGAACCTG TTGTTTTT TTAGTTTTTT chr3R:11619543-11619663 35 1.82e-04 GCACTCGGTG TTGTTTTT GCAAATCTGC chr3R:9381090-9381210 1 1.82e-04 . TTGTTTTT GATTTTCTCG chrX:3866265-3866385 49 2.06e-04 gctatttagt tttctgtt gtGAATTGCC chr2L:5490204-5490324 113 2.77e-04 cttcctttcc tttctttt chr3R:13716236-13716356 13 2.77e-04 TTCGGGCCgt tttctttt ccctcgcttt chr3R:26543570-26543690 8 2.77e-04 GCATTCA TTTTTATT GTCGTCATGC chr2L:20812608-20812728 27 2.77e-04 TCGAATCGAG TTTCTTTT CCCTGCCTCT chr2R:17682168-17682288 93 2.77e-04 TGAAGTCTGT TTTCTTTT GTTAAACCGC chr3R:11865272-11865392 23 2.77e-04 GCCTCCGCGT TTTTTATT TTGTTTACAC chrX:13111835-13111955 68 3.19e-04 CTgttcccaa ttcctgtt cctgttcccg chr3R:21319164-21319284 54 3.19e-04 tgcttctgcc ttcctgtt tccggttccg chr3L:2817988-2818108 6 4.23e-04 GTTTT TTCTTATT TATTTTTTTG chr3L:5141415-5141535 29 4.23e-04 GCTGTAATTG TTGCTGTT TTGATCGAAA chrX:13644765-13644885 9 4.23e-04 ATGCGATC TTCTTATT TTCTGCCTGC chr2R:17266171-17266291 81 4.23e-04 GATCGTTGTG TTTTTTTC CTTTTGTTTT chr2L:4375245-4375365 47 4.23e-04 TTTGTTTTCA TTTTTTtc tctctctctc chrX:12675369-12675489 103 4.23e-04 TGTTTATGTA TTTTTTTC CTTTTAGTTT chr2L:14177707-14177827 55 4.23e-04 GAAATGCGGC ttcttatt atgatttttg chr3L:16209816-16209936 19 4.23e-04 TTGTGCCGCC tttttttc gtgtttttat chrX:5892638-5892758 64 4.23e-04 TCTACTCATT TTGCTGTT TCATATGCAA chr3L:2837283-2837403 103 4.23e-04 TTACGCCCGC TTCCTTTT GGGGCCACGA chrX:13879565-13879685 84 4.78e-04 tgtttttgtt ttgctttt gcttttgcct chr3L:14059730-14059850 18 4.78e-04 atttattgtt ttgttatt ATGAAAAGCG chr2L:7207800-7207920 4 4.78e-04 ATC TTGTTATT ATTGTGATAT chrX:9077708-9077828 92 4.78e-04 AAAAAACCGG TTGTTATT CTGCCacaaa chr2L:168431-168551 2 5.09e-04 T TTTCTATT TTATGTTACT chr2L:16255655-16255775 42 5.70e-04 CCGAAAGAGA TTCTTTTC TTTCTTTTGT chr3R:10115114-10115234 7 5.94e-04 ATCCAC TTGTTTTC CAACAGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10603826-10603946 3.1e-05 106_[+5]_6 chr3L:270773-270893 3.1e-05 40_[+5]_72 chrX:13114941-13115061 3.1e-05 74_[+5]_38 chr3L:8154684-8154804 3.1e-05 69_[+5]_43 chrX:13406414-13406534 3.1e-05 2_[+5]_110 chrX:10021924-10022044 3.1e-05 10_[+5]_102 chr3R:16334416-16334536 3.1e-05 92_[+5]_20 chr3R:14062640-14062760 3.1e-05 85_[+5]_27 chrX:7973433-7973553 3.1e-05 23_[+5]_89 chr3R:30289502-30289622 3.1e-05 62_[+5]_50 chrX:17726114-17726234 3.1e-05 11_[+5]_101 chrX:18866426-18866546 3.1e-05 30_[+5]_82 chr3R:24004090-24004210 3.1e-05 25_[+5]_87 chrX:13116567-13116687 3.1e-05 10_[+5]_102 chr3L:7184866-7184986 3.1e-05 1_[+5]_111 chr3R:21841884-21842004 7.1e-05 103_[+5]_9 chr3R:19581977-19582097 7.1e-05 22_[+5]_90 chr3R:21938669-21938789 7.1e-05 102_[+5]_10 chr3L:5943649-5943769 7.1e-05 103_[+5]_9 chrX:5768977-5769097 7.1e-05 24_[+5]_88 chrX:16906172-16906292 7.1e-05 63_[+5]_49 chr3L:10534041-10534161 7.1e-05 88_[+5]_24 chrX:3151305-3151425 7.1e-05 70_[+5]_42 chrX:3158758-3158878 7.1e-05 45_[+5]_67 chrX:8823021-8823141 7.1e-05 44_[+5]_68 chrX:7980908-7981028 7.1e-05 105_[+5]_7 chr2R:21065121-21065241 9.5e-05 39_[+5]_73 chrX:19485198-19485318 9.5e-05 87_[+5]_25 chr3L:83129-83249 9.5e-05 109_[+5]_3 chr2R:6159946-6160066 0.00015 92_[+5]_20 chr2L:13035820-13035940 0.00015 41_[+5]_71 chr3R:30005453-30005573 0.00015 70_[+5]_42 chr3R:10592960-10593080 0.00015 10_[+5]_102 chr3L:14481525-14481645 0.00015 36_[+5]_76 chr2L:19144290-19144410 0.00015 64_[+5]_48 chr3L:22420947-22421067 0.00015 12_[+5]_100 chrX:17678383-17678503 0.00018 81_[+5]_31 chr3R:11619543-11619663 0.00018 34_[+5]_78 chr3R:9381090-9381210 0.00018 [+5]_112 chrX:3866265-3866385 0.00021 48_[+5]_64 chr2L:5490204-5490324 0.00028 112_[+5] chr3R:13716236-13716356 0.00028 12_[+5]_100 chr3R:26543570-26543690 0.00028 7_[+5]_105 chr2L:20812608-20812728 0.00028 26_[+5]_86 chr2R:17682168-17682288 0.00028 92_[+5]_20 chr3R:11865272-11865392 0.00028 22_[+5]_90 chrX:13111835-13111955 0.00032 67_[+5]_45 chr3R:21319164-21319284 0.00032 53_[+5]_59 chr3L:2817988-2818108 0.00042 5_[+5]_107 chr3L:5141415-5141535 0.00042 28_[+5]_84 chrX:13644765-13644885 0.00042 8_[+5]_104 chr2R:17266171-17266291 0.00042 80_[+5]_32 chr2L:4375245-4375365 0.00042 46_[+5]_66 chrX:12675369-12675489 0.00042 102_[+5]_10 chr2L:14177707-14177827 0.00042 54_[+5]_58 chr3L:16209816-16209936 0.00042 18_[+5]_94 chrX:5892638-5892758 0.00042 63_[+5]_49 chr3L:2837283-2837403 0.00042 102_[+5]_10 chrX:13879565-13879685 0.00048 83_[+5]_29 chr3L:14059730-14059850 0.00048 17_[+5]_95 chr2L:7207800-7207920 0.00048 3_[+5]_109 chrX:9077708-9077828 0.00048 91_[+5]_21 chr2L:168431-168551 0.00051 1_[+5]_111 chr2L:16255655-16255775 0.00057 41_[+5]_71 chr3R:10115114-10115234 0.00059 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTKTT width=8 seqs=65 chr2R:10603826-10603946 ( 107) TTTTTGTT 1 chr3L:270773-270893 ( 41) TTTTTGTT 1 chrX:13114941-13115061 ( 75) TTTTTGTT 1 chr3L:8154684-8154804 ( 70) TTTTTGTT 1 chrX:13406414-13406534 ( 3) TTTTTGTT 1 chrX:10021924-10022044 ( 11) TTTTTGTT 1 chr3R:16334416-16334536 ( 93) TTTTTGTT 1 chr3R:14062640-14062760 ( 86) TTTTTGTT 1 chrX:7973433-7973553 ( 24) TTTTTGTT 1 chr3R:30289502-30289622 ( 63) TTTTTGTT 1 chrX:17726114-17726234 ( 12) TTTTTGTT 1 chrX:18866426-18866546 ( 31) TTTTTGTT 1 chr3R:24004090-24004210 ( 26) TTTTTGTT 1 chrX:13116567-13116687 ( 11) TTTTTGTT 1 chr3L:7184866-7184986 ( 2) TTTTTGTT 1 chr3R:21841884-21842004 ( 104) TTTTTTTT 1 chr3R:19581977-19582097 ( 23) TTTTTTTT 1 chr3R:21938669-21938789 ( 103) TTTTTTTT 1 chr3L:5943649-5943769 ( 104) TTTTTTTT 1 chrX:5768977-5769097 ( 25) TTTTTTTT 1 chrX:16906172-16906292 ( 64) TTTTTTTT 1 chr3L:10534041-10534161 ( 89) TTTTTTTT 1 chrX:3151305-3151425 ( 71) TTTTTTTT 1 chrX:3158758-3158878 ( 46) TTTTTTTT 1 chrX:8823021-8823141 ( 45) TTTTTTTT 1 chrX:7980908-7981028 ( 106) TTTTTTTT 1 chr2R:21065121-21065241 ( 40) TTCTTGTT 1 chrX:19485198-19485318 ( 88) TTCTTGTT 1 chr3L:83129-83249 ( 110) TTCTTGTT 1 chr2R:6159946-6160066 ( 93) TTCTTTTT 1 chr2L:13035820-13035940 ( 42) TTCTTTTT 1 chr3R:30005453-30005573 ( 71) TTCTTTTT 1 chr3R:10592960-10593080 ( 11) TTGTTGTT 1 chr3L:14481525-14481645 ( 37) TTGTTGTT 1 chr2L:19144290-19144410 ( 65) TTCTTTTT 1 chr3L:22420947-22421067 ( 13) TTGTTGTT 1 chrX:17678383-17678503 ( 82) TTGTTTTT 1 chr3R:11619543-11619663 ( 35) TTGTTTTT 1 chr3R:9381090-9381210 ( 1) TTGTTTTT 1 chrX:3866265-3866385 ( 49) TTTCTGTT 1 chr2L:5490204-5490324 ( 113) TTTCTTTT 1 chr3R:13716236-13716356 ( 13) TTTCTTTT 1 chr3R:26543570-26543690 ( 8) TTTTTATT 1 chr2L:20812608-20812728 ( 27) TTTCTTTT 1 chr2R:17682168-17682288 ( 93) TTTCTTTT 1 chr3R:11865272-11865392 ( 23) TTTTTATT 1 chrX:13111835-13111955 ( 68) TTCCTGTT 1 chr3R:21319164-21319284 ( 54) TTCCTGTT 1 chr3L:2817988-2818108 ( 6) TTCTTATT 1 chr3L:5141415-5141535 ( 29) TTGCTGTT 1 chrX:13644765-13644885 ( 9) TTCTTATT 1 chr2R:17266171-17266291 ( 81) TTTTTTTC 1 chr2L:4375245-4375365 ( 47) TTTTTTTC 1 chrX:12675369-12675489 ( 103) TTTTTTTC 1 chr2L:14177707-14177827 ( 55) TTCTTATT 1 chr3L:16209816-16209936 ( 19) TTTTTTTC 1 chrX:5892638-5892758 ( 64) TTGCTGTT 1 chr3L:2837283-2837403 ( 103) TTCCTTTT 1 chrX:13879565-13879685 ( 84) TTGCTTTT 1 chr3L:14059730-14059850 ( 18) TTGTTATT 1 chr2L:7207800-7207920 ( 4) TTGTTATT 1 chrX:9077708-9077828 ( 92) TTGTTATT 1 chr2L:168431-168551 ( 2) TTTCTATT 1 chr2L:16255655-16255775 ( 42) TTCTTTTC 1 chr3R:10115114-10115234 ( 7) TTGTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0953 E= 7.5e-002 -1267 -1267 -1267 182 -1267 -1267 -1267 182 -1267 -1 -15 105 -1267 -24 -1267 153 -1267 -1267 -1267 182 -101 -1267 85 71 -1267 -1267 -1267 182 -1267 -124 -1267 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 7.5e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.215385 0.200000 0.584615 0.000000 0.184615 0.000000 0.815385 0.000000 0.000000 0.000000 1.000000 0.138462 0.000000 0.400000 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 0.092308 0.000000 0.907692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTKTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TCG]TT[TG]TT -------------------------------------------------------------------------------- Time 31.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8896340-8896460 3.39e-01 120 chr3L:14486726-14486846 1.78e-01 53_[+1(6.53e-05)]_4_[+1(3.67e-05)]_\ [+1(9.44e-05)]_12_[+1(3.67e-05)]_19 chr3R:23785041-23785161 3.48e-01 120 chr3L:7341350-7341470 5.29e-01 120 chrX:6282221-6282341 2.53e-02 42_[+2(7.13e-05)]_70 chrX:15024860-15024980 3.60e-01 120 chrX:7100864-7100984 1.47e-01 64_[+4(1.38e-05)]_48 chrX:15068620-15068740 2.26e-01 49_[+3(2.90e-05)]_63 chr3R:19318547-19318667 9.77e-01 120 chr2R:11214028-11214148 1.35e-01 67_[+3(1.47e-05)]_45 chr4:60745-60865 4.33e-03 67_[+4(1.38e-05)]_45 chr3R:24935905-24936025 5.36e-02 120 chr2L:12524315-12524435 2.10e-01 100_[+1(6.53e-05)]_12 chr3L:16752830-16752950 1.50e-02 4_[+1(3.67e-05)]_108 chr2R:13955925-13956045 5.75e-01 120 chr2R:5708301-5708421 1.33e-04 51_[+4(1.38e-05)]_46_[+2(4.00e-05)]_\ 7 chrX:3100030-3100150 1.54e-01 10_[+1(3.67e-05)]_[+1(3.67e-05)]_17_\ [+1(3.67e-05)]_69 chr3R:5308254-5308374 4.27e-02 62_[+3(1.47e-05)]_50 chr3L:2837283-2837403 2.73e-04 18_[+1(3.67e-05)]_94 chr2L:3618283-3618403 9.93e-02 9_[+4(8.11e-05)]_27_[+4(4.59e-05)]_\ 68 chr2R:24980669-24980789 4.53e-02 53_[+3(2.90e-05)]_59 chrX:15070926-15071046 8.33e-01 120 chr3R:8007702-8007822 4.12e-02 [+4(3.18e-05)]_112 chr2R:16706736-16706856 9.08e-01 120 chr2L:4374169-4374289 2.46e-01 52_[+4(6.37e-05)]_60 chrX:11785162-11785282 2.04e-01 15_[+1(3.67e-05)]_[+1(3.67e-05)]_2_\ [+1(3.67e-05)]_66_[+1(6.53e-05)]_5 chrX:7980908-7981028 1.28e-02 60_[+2(4.00e-05)]_36_[+2(4.00e-05)]_\ 8 chr3L:9863825-9863945 7.93e-03 32_[+3(9.19e-05)]_80 chr2R:24553609-24553729 1.47e-01 64_[+3(2.90e-05)]_48 chrX:13209546-13209666 8.14e-02 63_[+1(6.53e-05)]_49 chr3L:11213796-11213916 1.56e-01 120 chr2R:23730962-23731082 4.58e-02 120 chrX:17352149-17352269 3.37e-02 120 chr3R:14651165-14651285 2.69e-02 65_[+1(6.53e-05)]_47 chr3R:27925803-27925923 1.53e-01 94_[+3(4.75e-05)]_18 chr3L:4545261-4545381 3.72e-04 80_[+3(1.47e-05)]_14_[+1(6.53e-05)]_\ 10 chr2R:7472416-7472536 3.77e-01 120 chr2L:8418252-8418372 1.69e-01 35_[+4(1.38e-05)]_77 chr2R:7764301-7764421 2.34e-01 55_[+1(3.67e-05)]_57 chr3R:25596806-25596926 5.88e-02 24_[+1(3.67e-05)]_28_[+1(6.53e-05)]_\ 52 chr3R:14705398-14705518 2.90e-01 1_[+4(8.11e-05)]_111 chr2L:14665343-14665463 2.02e-04 39_[+2(4.00e-05)]_32_[+1(3.67e-05)]_\ 33 chrX:8823021-8823141 1.68e-02 30_[+2(4.00e-05)]_6_[+2(4.00e-05)]_\ 43_[+2(7.13e-05)]_4_[+2(4.00e-05)]_5 chr3L:2567334-2567454 1.13e-01 86_[+4(1.38e-05)]_26 chr3R:8164989-8165109 1.40e-01 54_[+1(3.67e-05)]_[+1(3.67e-05)]_50 chr2L:19868077-19868197 4.27e-02 63_[+3(1.47e-05)]_49 chr2R:19445675-19445795 1.30e-01 62_[+3(1.47e-05)]_50 chr3L:22420947-22421067 1.09e-03 45_[+5(3.13e-05)]_67 chrX:9577398-9577518 5.32e-02 120 chr2L:16590477-16590597 2.13e-01 62_[+1(9.44e-05)]_50 chr3R:21152413-21152533 8.92e-01 120 chr3L:3664418-3664538 2.55e-02 88_[+1(3.67e-05)]_24 chr2R:21618982-21619102 1.87e-01 72_[+3(4.75e-05)]_40 chrX:15080068-15080188 2.39e-02 47_[+3(1.47e-05)]_65 chr3L:16807661-16807781 1.17e-01 120 chrX:9344272-9344392 5.44e-03 16_[+1(3.67e-05)]_33_[+1(3.67e-05)]_\ 45_[+3(6.19e-05)]_2 chr2L:4885994-4886114 3.92e-02 79_[+3(1.47e-05)]_33 chr2L:18943424-18943544 7.45e-03 120 chr3R:9381090-9381210 8.23e-03 62_[+2(4.00e-05)]_50 chr3L:16803415-16803535 4.67e-01 120 chrX:4664244-4664364 3.94e-03 [+2(4.00e-05)]_112 chr2R:9190874-9190994 2.26e-02 28_[+1(6.53e-05)]_13_[+4(9.94e-05)]_\ 63 chrX:9077708-9077828 4.13e-05 2_[+3(6.19e-05)]_59_[+1(3.67e-05)]_\ [+1(6.53e-05)]_35 chr2R:16077967-16078087 1.11e-01 39_[+4(1.38e-05)]_73 chr2L:9945229-9945349 5.60e-01 120 chr2R:20938905-20939025 7.69e-03 6_[+4(4.59e-05)]_71_[+4(1.38e-05)]_\ 27 chr3L:7184866-7184986 5.67e-03 1_[+5(3.13e-05)]_3_[+2(7.13e-05)]_\ 38_[+2(4.00e-05)]_37_[+5(3.13e-05)]_9 chr2L:16488030-16488150 3.55e-02 26_[+3(1.47e-05)]_86 chr2R:14515128-14515248 1.49e-01 61_[+3(6.19e-05)]_51 chr4:519552-519672 6.82e-01 120 chrX:13116567-13116687 2.96e-03 10_[+5(3.13e-05)]_48_[+2(4.00e-05)]_\ 46 chrX:15608888-15609008 2.45e-02 13_[+1(3.67e-05)]_99 chr2R:21061452-21061572 2.03e-01 120 chr2R:24785644-24785764 8.97e-03 71_[+3(1.47e-05)]_41 chr2R:18760650-18760770 2.26e-01 93_[+4(9.94e-05)]_19 chr3R:21268365-21268485 2.43e-01 120 chr2L:7207800-7207920 1.59e-03 49_[+4(1.38e-05)]_7_[+4(9.94e-05)]_\ 48 chrX:5892638-5892758 8.77e-03 2_[+2(7.13e-05)]_110 chr3L:2568343-2568463 1.84e-01 109_[+4(4.59e-05)]_3 chr3R:18146804-18146924 1.75e-02 35_[+2(4.00e-05)]_77 chr3L:16209816-16209936 3.56e-04 48_[+5(3.13e-05)]_28_[+3(6.19e-05)]_\ 28 chr2R:21136173-21136293 4.61e-02 42_[+4(1.38e-05)]_70 chr3L:14059730-14059850 5.52e-02 120 chr3R:24004090-24004210 9.97e-04 25_[+5(3.13e-05)]_2_[+2(7.13e-05)]_\ 10_[+2(4.00e-05)]_59 chr2R:8952749-8952869 4.62e-01 120 chr2L:8155955-8156075 4.43e-03 41_[+4(1.38e-05)]_71 chrX:3158758-3158878 9.58e-04 42_[+2(4.00e-05)]_17_[+2(4.00e-05)]_\ 4_[+5(3.13e-05)]_33 chrX:2592395-2592515 5.21e-02 64_[+3(1.47e-05)]_48 chr3L:10386745-10386865 1.55e-01 42_[+1(6.53e-05)]_70 chr3R:19317465-19317585 5.00e-01 120 chr3R:21948194-21948314 1.75e-01 24_[+1(6.53e-05)]_88 chrX:17806468-17806588 4.85e-02 62_[+1(3.67e-05)]_23_[+1(3.67e-05)]_\ 19 chr3L:18073741-18073861 1.61e-01 120 chrX:3151305-3151425 9.96e-03 61_[+2(4.00e-05)]_[+2(4.00e-05)]_43 chr3R:21319164-21319284 3.73e-01 120 chr3L:10534041-10534161 2.93e-03 49_[+2(4.00e-05)]_30_[+2(4.00e-05)]_\ 25 chr3L:18889383-18889503 5.55e-01 120 chrX:9989362-9989482 3.46e-01 120 chr3L:12014434-12014554 1.15e-01 51_[+3(1.47e-05)]_61 chr3R:24117059-24117179 1.11e-01 73_[+3(1.47e-05)]_39 chr3L:1728447-1728567 3.72e-03 55_[+3(9.19e-05)]_57 chr2R:22596926-22597046 2.61e-04 35_[+3(1.47e-05)]_77 chr3R:10115114-10115234 1.12e-02 64_[+4(1.38e-05)]_48 chr3R:22526782-22526902 2.30e-02 76_[+2(7.13e-05)]_36 chr3R:15568055-15568175 4.93e-01 120 chrX:18866426-18866546 7.21e-03 30_[+5(3.13e-05)]_64_[+5(3.13e-05)]_\ 10 chr3R:11865272-11865392 1.32e-02 40_[+2(4.00e-05)]_72 chr2L:9707212-9707332 2.88e-03 35_[+4(1.38e-05)]_14_[+1(3.67e-05)]_\ 55 chr2L:14177707-14177827 1.60e-03 21_[+1(3.67e-05)]_91 chr3R:13524830-13524950 1.23e-01 [+1(3.67e-05)]_11_[+1(3.67e-05)]_3_\ [+1(3.67e-05)]_82 chrX:17726114-17726234 9.51e-03 11_[+5(3.13e-05)]_13_[+2(7.13e-05)]_\ 80 chrX:16906172-16906292 5.15e-03 46_[+2(4.00e-05)]_[+2(4.00e-05)]_1_\ [+2(4.00e-05)]_49 chr2R:17682168-17682288 6.31e-03 55_[+2(4.00e-05)]_57 chr2R:7427455-7427575 7.16e-01 120 chr2L:5284992-5285112 2.74e-01 120 chr2R:13962560-13962680 9.03e-01 120 chrX:17149772-17149892 2.94e-03 18_[+4(1.38e-05)]_94 chr2R:16154076-16154196 6.71e-02 29_[+1(3.67e-05)]_11_[+1(6.53e-05)]_\ 5_[+1(3.67e-05)]_51 chrX:17694317-17694437 3.33e-03 25_[+3(2.90e-05)]_25_[+1(3.67e-05)]_\ 28_[+1(3.67e-05)]_18 chr3L:18001687-18001807 4.98e-02 91_[+4(6.37e-05)]_21 chr3R:30289502-30289622 5.24e-04 40_[+2(4.00e-05)]_14_[+5(3.13e-05)]_\ 50 chr3R:15825684-15825804 9.55e-01 120 chr3R:21653559-21653679 1.54e-01 23_[+3(4.75e-05)]_89 chr3R:5622182-5622302 6.07e-01 120 chrX:11881820-11881940 1.49e-01 39_[+4(1.38e-05)]_73 chr2R:12526925-12527045 4.34e-02 59_[+1(3.67e-05)]_53 chr2L:8202668-8202788 1.84e-02 49_[+4(1.38e-05)]_63 chrX:10773717-10773837 5.87e-01 120 chrX:7973433-7973553 4.33e-03 23_[+5(3.13e-05)]_6_[+2(4.00e-05)]_\ 75 chr3R:8922696-8922816 2.60e-01 17_[+1(3.67e-05)]_95 chrX:5724405-5724525 1.83e-01 120 chr3L:83129-83249 6.69e-05 45_[+4(1.38e-05)]_56_[+5(9.55e-05)]_\ 3 chr3L:1381065-1381185 1.30e-01 92_[+3(4.75e-05)]_20 chrX:19485198-19485318 1.82e-02 11_[+2(7.13e-05)]_26_[+5(9.55e-05)]_\ 34_[+5(9.55e-05)]_25 chr2R:18432725-18432845 6.02e-01 120 chr3R:14062640-14062760 5.22e-03 41_[+2(7.13e-05)]_36_[+5(3.13e-05)]_\ 27 chr2R:16576611-16576731 8.16e-02 103_[+1(3.67e-05)]_9 chr2L:7028590-7028710 6.39e-03 28_[+3(1.47e-05)]_84 chr3R:11619543-11619663 3.52e-03 120 chr2L:20812608-20812728 1.85e-02 111_[+2(4.00e-05)]_1 chr3R:23319026-23319146 1.54e-01 97_[+1(3.67e-05)]_15 chr2R:23817896-23818016 2.85e-01 120 chr2R:16131909-16132029 2.35e-01 120 chr2L:16255655-16255775 3.12e-03 120 chr2R:24957394-24957514 8.47e-02 64_[+3(1.47e-05)]_48 chr2R:11592418-11592538 8.73e-02 19_[+1(6.53e-05)]_2_[+1(3.67e-05)]_\ 83 chr2L:8002337-8002457 2.08e-04 51_[+4(4.59e-05)]_1_[+1(3.67e-05)]_\ 14_[+4(1.38e-05)]_30 chr3R:18294591-18294711 2.73e-01 120 chr2R:24584558-24584678 1.09e-01 41_[+1(3.67e-05)]_71 chr3R:18312908-18313028 4.32e-01 120 chr3R:26543570-26543690 7.51e-03 109_[+2(4.00e-05)]_3 chr3R:4469012-4469132 1.63e-01 8_[+3(2.90e-05)]_104 chr2L:13122709-13122829 9.24e-02 42_[+1(6.53e-05)]_40_[+1(3.67e-05)]_\ 2_[+1(9.44e-05)]_12 chrX:8159114-8159234 3.93e-01 11_[+3(9.19e-05)]_101 chrX:4200765-4200885 1.34e-01 56_[+1(3.67e-05)]_4_[+1(3.67e-05)]_\ 44 chrX:5768977-5769097 1.15e-02 24_[+2(4.00e-05)]_7_[+5(3.13e-05)]_\ 10_[+2(4.00e-05)]_55 chr3L:6447856-6447976 2.82e-04 50_[+2(4.00e-05)]_62 chr3R:16334416-16334536 1.69e-02 92_[+5(3.13e-05)]_20 chrX:3866265-3866385 9.48e-03 20_[+2(7.13e-05)]_92 chr3R:11859270-11859390 2.43e-01 37_[+1(6.53e-05)]_75 chr2R:10807322-10807442 1.80e-01 40_[+3(9.19e-05)]_72 chr3L:5943649-5943769 6.78e-03 64_[+5(9.55e-05)]_17_[+2(4.00e-05)]_\ 3_[+2(4.00e-05)]_12 chr2L:19144290-19144410 1.68e-02 83_[+2(4.00e-05)]_29 chrX:3162064-3162184 4.31e-02 28_[+1(3.67e-05)]_84 chr2R:7370403-7370523 1.09e-04 111_[+1(3.67e-05)]_1 chr3R:24595803-24595923 3.41e-05 29_[+5(3.13e-05)]_25_[+1(3.67e-05)]_\ 1_[+1(9.44e-05)]_41 chr3R:21938669-21938789 3.31e-03 87_[+2(4.00e-05)]_6_[+2(4.00e-05)]_\ 11 chr3L:14481525-14481645 1.58e-04 62_[+5(3.13e-05)]_50 chrX:10021924-10022044 1.27e-02 10_[+5(3.13e-05)]_21_[+2(4.00e-05)]_\ 73 chrX:13406414-13406534 1.18e-04 2_[+5(3.13e-05)]_58_[+3(1.47e-05)]_\ 44 chrX:17522727-17522847 2.46e-02 18_[+1(3.67e-05)]_[+1(3.67e-05)]_2_\ [+1(3.67e-05)]_76 chr3R:27199033-27199153 1.12e-01 21_[+1(3.67e-05)]_21_[+1(6.53e-05)]_\ 62 chr3R:19581977-19582097 1.56e-03 16_[+2(4.00e-05)]_26_[+2(4.00e-05)]_\ 62 chr3L:4336711-4336831 2.68e-01 120 chr3L:20387941-20388061 1.05e-01 73_[+4(1.38e-05)]_39 chr2R:15237752-15237872 1.39e-01 26_[+1(3.67e-05)]_6_[+1(3.67e-05)]_\ 72 chr3L:8154684-8154804 7.97e-04 51_[+2(4.00e-05)]_10_[+5(3.13e-05)]_\ 43 chr3R:12717060-12717180 1.63e-01 91_[+3(4.75e-05)]_21 chr3L:3757669-3757789 2.59e-02 29_[+4(8.11e-05)]_71_[+1(3.67e-05)]_\ 4 chr3R:20564168-20564288 2.18e-04 4_[+5(3.13e-05)]_41_[+1(6.53e-05)]_\ 4_[+1(9.44e-05)]_47 chr2R:19157637-19157757 1.48e-01 92_[+1(6.53e-05)]_20 chr2L:135844-135964 1.26e-01 44_[+4(3.18e-05)]_68 chr2L:168431-168551 2.00e-03 43_[+3(9.19e-05)]_14_[+2(7.13e-05)]_\ 47 chrX:13114941-13115061 1.25e-02 59_[+5(3.13e-05)]_7_[+5(3.13e-05)]_\ 38 chrX:12675369-12675489 9.00e-03 9_[+1(9.44e-05)]_6_[+1(3.67e-05)]_\ 89 chr2R:9856724-9856844 1.96e-03 58_[+4(1.38e-05)]_54 chr3L:16854372-16854492 2.97e-01 51_[+1(6.53e-05)]_61 chrX:1613374-1613494 9.50e-01 120 chr2L:4375245-4375365 6.14e-02 36_[+2(7.13e-05)]_76 chr2R:22078791-22078911 7.78e-01 120 chr3R:8980372-8980492 7.59e-01 120 chr3L:9462906-9463026 5.28e-01 120 chr3R:10592960-10593080 1.36e-02 30_[+2(4.00e-05)]_82 chr3R:30005453-30005573 1.37e-02 80_[+2(4.00e-05)]_32 chr2R:12926109-12926229 3.97e-02 43_[+3(1.47e-05)]_69 chr3R:13716236-13716356 6.91e-02 27_[+2(7.13e-05)]_85 chr2L:20878173-20878293 8.41e-02 25_[+3(2.90e-05)]_87 chr2R:15530068-15530188 7.13e-02 31_[+3(9.19e-05)]_81 chr2R:17266171-17266291 6.67e-04 58_[+1(3.67e-05)]_24_[+2(7.13e-05)]_\ 22 chr3R:29460676-29460796 2.09e-01 52_[+3(2.90e-05)]_60 chr3R:21824534-21824654 2.63e-01 2_[+1(6.53e-05)]_45_[+1(6.53e-05)]_\ 57 chrX:17678383-17678503 2.39e-03 101_[+2(4.00e-05)]_11 chr3R:26464532-26464652 9.45e-02 56_[+4(1.38e-05)]_56 chr2R:24987639-24987759 9.50e-02 70_[+3(4.75e-05)]_42 chr3R:21634816-21634936 2.68e-04 22_[+3(4.75e-05)]_74_[+2(4.00e-05)]_\ 8 chr2L:16525292-16525412 4.42e-03 1_[+2(7.13e-05)]_31_[+1(6.53e-05)]_\ 72 chr3L:1866525-1866645 4.35e-02 104_[+4(3.18e-05)]_8 chr2R:11180836-11180956 2.20e-02 19_[+1(9.44e-05)]_7_[+1(6.53e-05)]_\ 78 chr2L:10794156-10794276 3.04e-02 38_[+1(6.53e-05)]_3_[+1(3.67e-05)]_\ 13_[+1(6.53e-05)]_42 chr2L:16278237-16278357 7.63e-02 120 chr3L:11323658-11323778 8.00e-01 120 chr3R:21841884-21842004 2.24e-03 77_[+2(4.00e-05)]_17_[+2(4.00e-05)]_\ 10 chr3R:13845695-13845815 7.30e-01 120 chrX:13879565-13879685 5.20e-04 69_[+5(3.13e-05)]_43 chr2R:21496665-21496785 2.94e-01 120 chr3L:16927444-16927564 2.46e-01 120 chr2L:16511458-16511578 4.75e-01 120 chr2L:13035820-13035940 1.17e-03 70_[+1(3.67e-05)]_42 chr2L:131479-131599 1.11e-02 48_[+3(4.75e-05)]_64 chr2R:21065121-21065241 3.13e-02 39_[+5(9.55e-05)]_73 chr3L:14450679-14450799 9.32e-01 120 chr2R:6159946-6160066 2.41e-02 54_[+2(4.00e-05)]_58 chrX:21369719-21369839 1.62e-02 103_[+3(2.90e-05)]_9 chr2L:5236560-5236680 3.85e-03 94_[+1(6.53e-05)]_18 chrX:17488524-17488644 2.23e-01 19_[+1(3.67e-05)]_9_[+1(9.44e-05)]_\ 76 chr3R:26004518-26004638 1.51e-01 35_[+1(3.67e-05)]_21_[+1(3.67e-05)]_\ 48 chr3L:10814047-10814167 2.07e-01 79_[+1(3.67e-05)]_4_[+1(3.67e-05)]_\ 21 chr2R:15350675-15350795 1.56e-01 80_[+4(4.59e-05)]_16_[+4(4.59e-05)]_\ 8 chrX:13644765-13644885 2.33e-03 37_[+3(1.47e-05)]_75 chr3L:22401684-22401804 5.83e-01 120 chr2L:5490204-5490324 7.41e-03 84_[+5(3.13e-05)]_28 chr3L:270773-270893 3.57e-05 40_[+5(3.13e-05)]_27_[+2(7.13e-05)]_\ 37 chr3L:19869938-19870058 8.68e-01 120 chrX:19359245-19359365 1.28e-01 72_[+1(3.67e-05)]_7_[+1(3.67e-05)]_\ 12_[+1(9.44e-05)]_5 chr3L:2490879-2490999 4.85e-01 120 chr3R:25529436-25529556 1.51e-02 42_[+1(3.67e-05)]_7_[+1(3.67e-05)]_\ 55 chrX:13948904-13949024 1.92e-01 120 chr2L:2802673-2802793 9.99e-01 120 chr3L:5141415-5141535 3.10e-02 49_[+3(4.75e-05)]_63 chr2L:5494247-5494367 2.48e-03 63_[+4(1.38e-05)]_49 chr3L:2837488-2837608 5.42e-02 120 chr3L:2817988-2818108 6.19e-02 120 chr3L:3197316-3197436 9.68e-01 120 chrX:3140070-3140190 1.51e-04 7_[+2(4.00e-05)]_96_[+1(6.53e-05)]_\ 1 chr2L:8420404-8420524 2.10e-03 111_[+1(9.44e-05)]_1 chr2R:10603826-10603946 2.44e-03 93_[+2(4.00e-05)]_5_[+5(3.13e-05)]_\ 6 chrX:13111835-13111955 1.96e-01 120 chr2R:13023887-13024007 1.38e-01 57_[+1(3.67e-05)]_55 chr3R:25493954-25494074 2.25e-02 45_[+3(1.47e-05)]_67 chr2R:6148133-6148253 7.76e-02 23_[+4(1.38e-05)]_89 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************